Citrus Sinensis ID: 030193
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 181 | 2.2.26 [Sep-21-2011] | |||||||
| O48920 | 181 | ADP-ribosylation factor O | N/A | no | 1.0 | 1.0 | 0.983 | 1e-103 | |
| Q06396 | 181 | ADP-ribosylation factor 1 | yes | no | 1.0 | 1.0 | 0.977 | 1e-102 | |
| P36397 | 181 | ADP-ribosylation factor 1 | yes | no | 1.0 | 1.0 | 0.983 | 1e-102 | |
| P51822 | 181 | ADP-ribosylation factor 1 | N/A | no | 1.0 | 1.0 | 0.977 | 1e-102 | |
| P0DH91 | 181 | ADP-ribosylation factor 2 | yes | no | 1.0 | 1.0 | 0.983 | 1e-102 | |
| Q9LQC8 | 181 | ADP-ribosylation factor 2 | yes | no | 1.0 | 1.0 | 0.983 | 1e-102 | |
| P51823 | 181 | ADP-ribosylation factor 2 | yes | no | 1.0 | 1.0 | 0.977 | 1e-102 | |
| P49076 | 181 | ADP-ribosylation factor O | N/A | no | 1.0 | 1.0 | 0.966 | 1e-101 | |
| O23778 | 181 | ADP-ribosylation factor 1 | N/A | no | 1.0 | 1.0 | 0.966 | 1e-100 | |
| O48649 | 181 | ADP-ribosylation factor 1 | N/A | no | 1.0 | 1.0 | 0.961 | 1e-100 |
| >sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Vigna unguiculata (taxid: 3917) |
| >sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/181 (97%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes. Arabidopsis thaliana (taxid: 3702) |
| >sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/181 (97%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Daucus carota (taxid: 4039) |
| >sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/181 (97%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/181 (96%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIATK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATK 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Zea mays (taxid: 4577) |
| >sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/181 (96%), Positives = 178/181 (98%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQY 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Catharanthus roseus (taxid: 4058) |
| >sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/181 (96%), Positives = 178/181 (98%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKL +LF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Salix bakko (taxid: 72444) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 181 | ||||||
| 357495837 | 248 | ADP-ribosylation factor [Medicago trunca | 1.0 | 0.729 | 0.983 | 1e-102 | |
| 296089819 | 591 | unnamed protein product [Vitis vinifera] | 1.0 | 0.306 | 0.988 | 1e-102 | |
| 297736783 | 211 | unnamed protein product [Vitis vinifera] | 1.0 | 0.857 | 0.988 | 1e-101 | |
| 224122864 | 181 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.988 | 1e-101 | |
| 357485863 | 454 | ADP-ribosylation factor [Medicago trunca | 1.0 | 0.398 | 0.983 | 1e-101 | |
| 47026845 | 199 | ADP-ribosylation factor [Hyacinthus orie | 1.0 | 0.909 | 0.983 | 1e-101 | |
| 357511441 | 206 | ADP-ribosylation factor-like protein [Me | 1.0 | 0.878 | 0.983 | 1e-101 | |
| 217072662 | 181 | unknown [Medicago truncatula] gi|3884949 | 1.0 | 1.0 | 0.983 | 1e-101 | |
| 125546170 | 354 | hypothetical protein OsI_14032 [Oryza sa | 1.0 | 0.511 | 0.966 | 1e-101 | |
| 224068638 | 181 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.988 | 1e-101 |
| >gi|357495837|ref|XP_003618207.1| ADP-ribosylation factor [Medicago truncatula] gi|355493222|gb|AES74425.1| ADP-ribosylation factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 68 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 127
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 128 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 187
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 188 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 247
Query: 181 A 181
A
Sbjct: 248 A 248
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089819|emb|CBI39638.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 411 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 470
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 471 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 530
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 531 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 590
Query: 181 A 181
A
Sbjct: 591 A 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736783|emb|CBI25984.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 31 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 90
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 91 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 150
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 151 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 210
Query: 181 A 181
A
Sbjct: 211 A 211
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122864|ref|XP_002318935.1| predicted protein [Populus trichocarpa] gi|224124598|ref|XP_002330063.1| predicted protein [Populus trichocarpa] gi|356571535|ref|XP_003553932.1| PREDICTED: ADP-ribosylation factor isoform 1 [Glycine max] gi|356571537|ref|XP_003553933.1| PREDICTED: ADP-ribosylation factor isoform 2 [Glycine max] gi|356571539|ref|XP_003553934.1| PREDICTED: ADP-ribosylation factor isoform 3 [Glycine max] gi|118482509|gb|ABK93177.1| unknown [Populus trichocarpa] gi|118483518|gb|ABK93657.1| unknown [Populus trichocarpa] gi|118487697|gb|ABK95673.1| unknown [Populus trichocarpa] gi|222857311|gb|EEE94858.1| predicted protein [Populus trichocarpa] gi|222871488|gb|EEF08619.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485863|ref|XP_003613219.1| ADP-ribosylation factor [Medicago truncatula] gi|355514554|gb|AES96177.1| ADP-ribosylation factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 274 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 333
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 334 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 393
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 394 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 453
Query: 181 A 181
A
Sbjct: 454 A 454
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47026845|gb|AAT08648.1| ADP-ribosylation factor [Hyacinthus orientalis] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 19 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 78
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 79 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 138
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 139 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 198
Query: 181 A 181
Sbjct: 199 G 199
|
Source: Hyacinthus orientalis Species: Hyacinthus orientalis Genus: Hyacinthus Family: Hyacinthaceae Order: Asparagales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511441|ref|XP_003626009.1| ADP-ribosylation factor-like protein [Medicago truncatula] gi|355501024|gb|AES82227.1| ADP-ribosylation factor-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
Sbjct: 181 V 181
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072662|gb|ACJ84691.1| unknown [Medicago truncatula] gi|388494928|gb|AFK35530.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125546170|gb|EAY92309.1| hypothetical protein OsI_14032 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/181 (96%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASK 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068638|ref|XP_002302788.1| predicted protein [Populus trichocarpa] gi|224124602|ref|XP_002330064.1| predicted protein [Populus trichocarpa] gi|224128225|ref|XP_002320274.1| predicted protein [Populus trichocarpa] gi|225432130|ref|XP_002264654.1| PREDICTED: ADP-ribosylation factor 2-like [Vitis vinifera] gi|225437665|ref|XP_002279216.1| PREDICTED: ADP-ribosylation factor 2-like isoform 1 [Vitis vinifera] gi|225450510|ref|XP_002281047.1| PREDICTED: ADP-ribosylation factor 2-like [Vitis vinifera] gi|255548341|ref|XP_002515227.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|255548347|ref|XP_002515230.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|356499703|ref|XP_003518676.1| PREDICTED: ADP-ribosylation factor 2-like [Glycine max] gi|356534669|ref|XP_003535875.1| PREDICTED: ADP-ribosylation factor 2-like [Glycine max] gi|356575319|ref|XP_003555789.1| PREDICTED: ADP-ribosylation factor 2-like isoform 1 [Glycine max] gi|356575321|ref|XP_003555790.1| PREDICTED: ADP-ribosylation factor 2-like isoform 2 [Glycine max] gi|357442149|ref|XP_003591352.1| ADP ribosylation factor [Medicago truncatula] gi|359480198|ref|XP_003632415.1| PREDICTED: ADP-ribosylation factor 2-like isoform 2 [Vitis vinifera] gi|449436393|ref|XP_004135977.1| PREDICTED: ADP-ribosylation factor 2-like [Cucumis sativus] gi|449524537|ref|XP_004169278.1| PREDICTED: ADP-ribosylation factor 2-like [Cucumis sativus] gi|77812440|gb|ABB03801.1| ADP ribosylation factor 002 [Daucus carota] gi|118482447|gb|ABK93146.1| unknown [Populus trichocarpa] gi|118482485|gb|ABK93165.1| unknown [Populus trichocarpa] gi|217072062|gb|ACJ84391.1| unknown [Medicago truncatula] gi|222844514|gb|EEE82061.1| predicted protein [Populus trichocarpa] gi|222861047|gb|EEE98589.1| predicted protein [Populus trichocarpa] gi|222871489|gb|EEF08620.1| predicted protein [Populus trichocarpa] gi|223545707|gb|EEF47211.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|223545710|gb|EEF47214.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|327505557|gb|AEA92306.1| Arf2 [Hevea brasiliensis] gi|355480400|gb|AES61603.1| ADP ribosylation factor [Medicago truncatula] gi|388492408|gb|AFK34270.1| unknown [Medicago truncatula] gi|406657702|gb|AFS50009.1| hypothetical protein [Dendrobium officinale] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 181 | ||||||
| TAIR|locus:2222677 | 188 | ARFA1B "ADP-ribosylation facto | 0.994 | 0.957 | 0.988 | 3.4e-93 | |
| TAIR|locus:2019948 | 181 | ARFA1F "ADP-ribosylation facto | 1.0 | 1.0 | 0.983 | 5.5e-93 | |
| TAIR|locus:2098063 | 181 | ARFA1E "ADP-ribosylation facto | 1.0 | 1.0 | 0.988 | 5.5e-93 | |
| TAIR|locus:2065114 | 181 | ARF1A1C [Arabidopsis thaliana | 1.0 | 1.0 | 0.983 | 9e-93 | |
| UNIPROTKB|P51823 | 181 | ARF "ADP-ribosylation factor 2 | 1.0 | 1.0 | 0.977 | 1.1e-92 | |
| TAIR|locus:2028926 | 181 | ARF1 "ADP-ribosylation factor | 1.0 | 1.0 | 0.983 | 1.1e-92 | |
| TAIR|locus:2026780 | 181 | ARFA1D [Arabidopsis thaliana ( | 1.0 | 1.0 | 0.983 | 1.1e-92 | |
| UNIPROTKB|J9NWP6 | 181 | LOC480487 "Uncharacterized pro | 0.994 | 0.994 | 0.894 | 2.4e-83 | |
| CGD|CAL0003401 | 181 | ARF2 [Candida albicans (taxid: | 0.977 | 0.977 | 0.875 | 8.2e-83 | |
| UNIPROTKB|P84081 | 181 | ARF2 "ADP-ribosylation factor | 0.977 | 0.977 | 0.903 | 8.2e-83 |
| TAIR|locus:2222677 ARFA1B "ADP-ribosylation factor A1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 178/180 (98%), Positives = 180/180 (100%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
|
|
| TAIR|locus:2019948 ARFA1F "ADP-ribosylation factor A1F" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 178/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2098063 ARFA1E "ADP-ribosylation factor A1E" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 179/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2065114 ARF1A1C [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 178/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| UNIPROTKB|P51823 ARF "ADP-ribosylation factor 2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 177/181 (97%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2028926 ARF1 "ADP-ribosylation factor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 178/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
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| TAIR|locus:2026780 ARFA1D [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 178/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
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| UNIPROTKB|J9NWP6 LOC480487 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 161/180 (89%), Positives = 168/180 (93%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG F KLF LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + T+
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180
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| CGD|CAL0003401 ARF2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 155/177 (87%), Positives = 170/177 (96%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF+KLF+ LF KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFSKLFANLFGNKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDR+ EAR+EL +MLNEDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRIAEAREELQQMLNEDELRDAL 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
LLVFANKQDLPNAMNAAEIT+KLGLHS+RQR WYIQ+TCAT+G+GLYEGL+WLS N+
Sbjct: 121 LLVFANKQDLPNAMNAAEITEKLGLHSIRQRPWYIQATCATTGDGLYEGLEWLSTNL 177
|
|
| UNIPROTKB|P84081 ARF2 "ADP-ribosylation factor 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 160/177 (90%), Positives = 166/177 (93%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG F KLF LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQL 177
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48920 | ARF_VIGUN | No assigned EC number | 0.9834 | 1.0 | 1.0 | N/A | no |
| P51644 | ARF4_XENLA | No assigned EC number | 0.8111 | 0.9944 | 1.0 | N/A | no |
| O00909 | ARF1_DICDI | No assigned EC number | 0.8453 | 1.0 | 0.9945 | yes | no |
| P51643 | ARF1_XENLA | No assigned EC number | 0.8983 | 0.9779 | 0.9779 | N/A | no |
| P91924 | ARF_DUGJA | No assigned EC number | 0.8674 | 1.0 | 0.9890 | N/A | no |
| P36397 | ARF1_ARATH | No assigned EC number | 0.9834 | 1.0 | 1.0 | yes | no |
| Q61LA8 | ARF12_CAEBR | No assigned EC number | 0.8674 | 1.0 | 1.0 | N/A | no |
| Q7RVM2 | ARF_NEUCR | No assigned EC number | 0.8757 | 0.9779 | 0.9567 | N/A | no |
| Q3SZF2 | ARF4_BOVIN | No assigned EC number | 0.8111 | 0.9944 | 1.0 | no | no |
| P61210 | ARF1_LOCMI | No assigned EC number | 0.8870 | 0.9779 | 0.9725 | N/A | no |
| P84082 | ARF2_RAT | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | yes | no |
| P84083 | ARF5_RAT | No assigned EC number | 0.8 | 0.9944 | 1.0 | no | no |
| P84080 | ARF1_BOVIN | No assigned EC number | 0.8983 | 0.9779 | 0.9779 | yes | no |
| P84081 | ARF2_BOVIN | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | yes | no |
| Q5R5P7 | ARF3_PONAB | No assigned EC number | 0.8722 | 0.9944 | 0.9944 | yes | no |
| Q10943 | ARF12_CAEEL | No assigned EC number | 0.8618 | 1.0 | 1.0 | yes | no |
| P84084 | ARF5_MOUSE | No assigned EC number | 0.8 | 0.9944 | 1.0 | no | no |
| P22274 | ARF_CANAL | No assigned EC number | 0.8202 | 0.9834 | 0.9944 | N/A | no |
| P51822 | ARF1_DAUCA | No assigned EC number | 0.9779 | 1.0 | 1.0 | N/A | no |
| P51823 | ARF2_ORYSJ | No assigned EC number | 0.9779 | 1.0 | 1.0 | yes | no |
| P51821 | ARF1_CHLRE | No assigned EC number | 0.9555 | 0.9944 | 0.9944 | N/A | no |
| P51824 | ARF1_SOLTU | No assigned EC number | 0.9491 | 0.9779 | 0.8984 | N/A | no |
| P84077 | ARF1_HUMAN | No assigned EC number | 0.8983 | 0.9779 | 0.9779 | yes | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.8611 | 0.9944 | 1.0 | yes | no |
| P84085 | ARF5_HUMAN | No assigned EC number | 0.8 | 0.9944 | 1.0 | no | no |
| P61209 | ARF1_DROME | No assigned EC number | 0.8870 | 0.9779 | 0.9725 | yes | no |
| P84079 | ARF1_RAT | No assigned EC number | 0.8983 | 0.9779 | 0.9779 | yes | no |
| P84078 | ARF1_MOUSE | No assigned EC number | 0.8983 | 0.9779 | 0.9779 | yes | no |
| P18085 | ARF4_HUMAN | No assigned EC number | 0.8 | 0.9944 | 1.0 | no | no |
| P0CM17 | ARF_CRYNB | No assigned EC number | 0.8674 | 1.0 | 0.9945 | N/A | no |
| P0CM16 | ARF_CRYNJ | No assigned EC number | 0.8674 | 1.0 | 0.9945 | yes | no |
| Q06396 | ARF1_ORYSJ | No assigned EC number | 0.9779 | 1.0 | 1.0 | yes | no |
| P40945 | ARF2_DROME | No assigned EC number | 0.8333 | 0.9944 | 1.0 | no | no |
| P61205 | ARF3_MOUSE | No assigned EC number | 0.8722 | 0.9944 | 0.9944 | no | no |
| P61204 | ARF3_HUMAN | No assigned EC number | 0.8722 | 0.9944 | 0.9944 | yes | no |
| P61207 | ARF3_TAKRU | No assigned EC number | 0.8722 | 0.9944 | 0.9944 | N/A | no |
| P61206 | ARF3_RAT | No assigned EC number | 0.8722 | 0.9944 | 0.9944 | no | no |
| O48649 | ARF1_SALBA | No assigned EC number | 0.9613 | 1.0 | 1.0 | N/A | no |
| Q8BSL7 | ARF2_MOUSE | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | yes | no |
| Q5RCF1 | ARF4_PONAB | No assigned EC number | 0.8 | 0.9944 | 1.0 | no | no |
| Q9LQC8 | ARF2A_ARATH | No assigned EC number | 0.9834 | 1.0 | 1.0 | yes | no |
| P49076 | ARF_MAIZE | No assigned EC number | 0.9668 | 1.0 | 1.0 | N/A | no |
| Q4R5P2 | ARF1_MACFA | No assigned EC number | 0.8983 | 0.9779 | 0.9779 | N/A | no |
| P34727 | ARF_AJECA | No assigned EC number | 0.8474 | 0.9779 | 0.9672 | N/A | no |
| Q5E9I6 | ARF3_BOVIN | No assigned EC number | 0.8722 | 0.9944 | 0.9944 | no | no |
| P49702 | ARF5_CHICK | No assigned EC number | 0.7888 | 0.9944 | 1.0 | no | no |
| P0DH91 | ARF2B_ARATH | No assigned EC number | 0.9834 | 1.0 | 1.0 | yes | no |
| Q75A26 | ARF_ASHGO | No assigned EC number | 0.8287 | 1.0 | 1.0 | yes | no |
| P61751 | ARF4_RAT | No assigned EC number | 0.8 | 0.9944 | 1.0 | no | no |
| O23778 | ARF1_CATRO | No assigned EC number | 0.9668 | 1.0 | 1.0 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_1310224 | SubName- Full=Putative uncharacterized protein; (181 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 181 | |||
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-136 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-128 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 1e-127 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 1e-122 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 1e-114 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 1e-109 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-105 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 2e-93 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 5e-87 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 1e-70 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 1e-69 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-68 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 6e-68 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 8e-61 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 1e-57 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 1e-46 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 2e-42 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-39 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 2e-37 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 2e-33 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-30 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 4e-30 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 3e-19 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-17 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 2e-15 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 2e-14 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 5e-13 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 2e-12 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 3e-11 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 3e-10 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 8e-10 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 2e-09 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 7e-09 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 2e-08 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-08 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-07 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 3e-07 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 4e-07 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 5e-07 | |
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 6e-07 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 1e-06 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 2e-06 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 3e-06 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 3e-06 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 4e-06 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 5e-06 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 8e-06 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 9e-06 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 1e-05 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 1e-05 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 1e-05 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 1e-05 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 1e-05 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 2e-05 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-05 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 5e-05 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 5e-05 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 7e-05 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-04 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 2e-04 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 3e-04 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 5e-04 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 5e-04 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 5e-04 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 6e-04 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 6e-04 | |
| COG0536 | 369 | COG0536, Obg, Predicted GTPase [General function p | 8e-04 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 0.001 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 0.001 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 0.003 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 0.003 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-136
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Length = 181 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 357 bits (917), Expect = e-128
Identities = 148/159 (93%), Positives = 156/159 (98%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RMLNEDELRDAVLLVFANKQDLPNAM+AA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
E+TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSNN
Sbjct: 121 EVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 353 bits (908), Expect = e-127
Identities = 141/181 (77%), Positives = 160/181 (88%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL + F LF KKE+RILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN
Sbjct: 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ FT+WDVGGQDK+RPLWRHY+QNT GLIFVVDSNDR+R+ +AR+EL RML+EDELRDAV
Sbjct: 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQDLPNAM+ E+T+KLGLHS+RQR+WYIQ CAT+ +GLYEGLDWLS NI
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180
Query: 181 A 181
Sbjct: 181 M 181
|
Length = 182 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = e-122
Identities = 151/173 (87%), Positives = 161/173 (93%)
Query: 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
KLFSKLF KEMRILMVGLDAAGKTTILYKLKLGE VTTIPTIGFNVETV YKNISFT
Sbjct: 1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFT 60
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
VWDVGGQDKIRPLWRHY+ NTQGLIFVVDSNDRDR+ EAR+ELHRMLNEDELRDAV+LVF
Sbjct: 61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
ANKQDLP+AM AAEIT+KLGLHS+R R+WYIQ TCATSG+GLYEGL WLSNN+
Sbjct: 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 321 bits (824), Expect = e-114
Identities = 122/174 (70%), Positives = 141/174 (81%), Gaps = 1/174 (0%)
Query: 5 FTKLFSKLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
F + +KLF KEMRIL++GLD AGKTTILYKLKLGEIVTTIPTIGFNVETV YKN+ F
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
TVWDVGGQ+ +RPLWR+YF NT +IFVVDS DRDR+ EA++ELH +LNE+EL DA LL+
Sbjct: 61 TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120
Query: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
ANKQDLP AM+ AEI + LGLH L+ R W IQ A +GEGL EGLDWLSN I
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = e-109
Identities = 127/168 (75%), Positives = 146/168 (86%)
Query: 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
SKLF KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDV
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 60
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
GGQDKIRPLWRHY+ TQGLIFVVDS DRDR+ EAR ELHR++N+ E+RDA+LLVFANKQ
Sbjct: 61 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
DLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WLS+N
Sbjct: 121 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 298 bits (766), Expect = e-105
Identities = 110/158 (69%), Positives = 135/158 (85%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
RILM+GLD AGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN+ FTVWDVGGQDKIRPLW
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+HY++NT GLIFVVDS+DR+R+ EA++ELH++LNE+EL+ A LL+ ANKQDLP A+ +E
Sbjct: 61 KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ + LGL S++ R W+IQ A +G+GL EGLDWL
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 2e-93
Identities = 103/157 (65%), Positives = 126/157 (80%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ IRP W
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
R Y+ NT +I+VVDS DRDR+ ++ ELH ML E+EL+DAVLLVFANKQD+P A++ AE
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
+ +KLGL L+ R W I T AT GEGL EG+DWL N
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVN 157
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 252 bits (646), Expect = 5e-87
Identities = 93/172 (54%), Positives = 126/172 (73%)
Query: 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
F+ L+S F +KE ++++VGLD AGKTTILY+ LGE+V T PTIG NVE + YKNI F
Sbjct: 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFL 62
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+WD+GGQ+ +R W Y+ NT +I V+DS DR+R+ ++EL++ML ++LR AVLLV
Sbjct: 63 MWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVL 122
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
ANKQDL AM AEI++ LGL S+R W+IQ CA +GEGL EGLDW+++
Sbjct: 123 ANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 211 bits (537), Expect = 1e-70
Identities = 99/160 (61%), Positives = 124/160 (77%), Gaps = 1/160 (0%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+HY+ NTQ ++FV+DS+ RDRV EA EL ++L E ELRDA+LL+FANKQD+ A++ E
Sbjct: 61 KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120
Query: 139 ITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+T+ L LH L R WYIQ A SG GLYEGLDWLS +
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 1e-69
Identities = 83/162 (51%), Positives = 115/162 (70%), Gaps = 2/162 (1%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EMRILM+GLD AGKTTIL K GE ++TI PT+GFN++T+EY +WDVGGQ +
Sbjct: 13 REMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSL 71
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R WR+YF++T LI+VVDS+DR R+ + + EL ++L E+ L A LL+FANKQDLP A+
Sbjct: 72 RSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGAL 131
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ EI + L L S++ HW I A +GE L +G+DWL ++
Sbjct: 132 SPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVDD 173
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 1e-68
Identities = 83/166 (50%), Positives = 112/166 (67%)
Query: 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70
K +++E+RIL++GLD AGKTTIL +L +I PT GFN++ V+ VWD+GG
Sbjct: 9 KPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGG 68
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q KIRP WR+YF+NT LI+V+DS DR R EA EL +L E++L +LVFANKQDL
Sbjct: 69 QRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
A A E+ + L LH +R R W+IQ+ A +GEGL EG++W+ N
Sbjct: 129 LTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCKN 174
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 6e-68
Identities = 76/154 (49%), Positives = 111/154 (72%), Gaps = 2/154 (1%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL 77
++L++GLD+AGK+T+LYKLK E+VTTIPT+GFNVE ++ K++S TVWDVGGQ+K+R +
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
W+ Y +NT GL++VVDS+D R+ E++ EL +L + ++ +++ ANKQDLP A+ A
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 138 EITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGL 170
EIT + L R WY+Q A +GEGL E
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 8e-61
Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 6/166 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72
+ I+M+GLD+AGKTT+LY+LK E V T+PT GFN E ++ K ++F WDVGGQ+
Sbjct: 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++ E + +LV ANKQDLPN
Sbjct: 64 KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123
Query: 133 AMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
A+ +E+ L LH L W++Q CA GEGL EGL+ L I
Sbjct: 124 ALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI 169
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 1e-57
Identities = 76/160 (47%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
IL++GLD +GKTTI+ +LK + PT+GFNVE+ + N+SFT +D+ GQ K R L
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMN 135
W HY++N QG+IFV+DS+DR R+V A+DEL +LN ++ R +L +ANK DLP+A+
Sbjct: 62 WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
A +IT L L +++ + W+I ++ A +GEGL EG+DWL
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-46
Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 13/186 (6%)
Query: 5 FTKLFSKL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
F + S L KKE +I+ +GLD AGKTT+L+ LK + +PT+ E + N+ F
Sbjct: 6 FYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKF 65
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
T +D+GG ++ R +W+ YF G++F+VD+ D +R E+++EL +LN++EL + +L+
Sbjct: 66 TTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILI 125
Query: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLD 171
NK D P A++ E+ + LGL+ R + +G EG
Sbjct: 126 LGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFR 185
Query: 172 WLSNNI 177
WLS +
Sbjct: 186 WLSQYL 191
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 2e-42
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 16/168 (9%)
Query: 20 ILMVGLDAAGKTTILYKLK-----------LGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
+L++GLD AGKTT L + K +I PT+G N+ T+E WD+
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKIT---PTVGLNIGTIEVGKARLMFWDL 58
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
GGQ+++R LW Y+ + G+I+V+DS DR+R E++ +++N + L LLV ANKQ
Sbjct: 59 GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQ 118
Query: 129 DLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
DLP+A++ AEI + + + +R +Q A GEG+ EG++WL
Sbjct: 119 DLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-39
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
I +VGL +GKTT++ + G+ TIPT+GFN+ V N++ VWD+GGQ + R +W
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
Y + +++VVD+ DR+++ A++ELH +L + L LLV NK DLP A++ E
Sbjct: 62 ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ +++ L S+ R S A + LDWL +
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-37
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 6/146 (4%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
IL++GLD AGKT++L+ L E + +PT GFN + ++ + ++GG +R
Sbjct: 2 ILVLGLDGAGKTSLLHSLS-SERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
W+ Y +QGLIFVVDS D +R+ AR ELH++L D L+V ANKQDLP A +
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQ 118
Query: 138 EITDKLGLHSL-RQRHWYIQSTCATS 162
EI +L L + R R W +Q T
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDD 144
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-33
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79
+L VGLD AGKTT++ L+ PT+GF + ++D+GG R +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61
Query: 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139
+Y+ GL+FVVDS+D DRV E ++ L +L + +LV ANKQD NA+ A++
Sbjct: 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121
Query: 140 TDKLGLHSLRQR---HWYIQSTCATSGEG------LYEGLDWL 173
+ L L L +I+ A G G + EGL WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-30
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
K +IL +GLD AGKTT+L+ LK + PT E + NI FT +D+GG +
Sbjct: 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQA 74
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R LW+ YF G++++VD+ D++R E++ EL +L+++EL L+ NK D P A
Sbjct: 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134
Query: 135 NAAEITDKLGLHSL---------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ E+ LGL + R ++ S G G EG WLS I
Sbjct: 135 SEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYG--EGFKWLSQYI 184
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-30
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----KNISFTVWD 67
KE +I+++G GKTT+L +L E PTIG +NI +WD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
GQ++ R L Y++ G++ V DS R+ E +E L E D +L+ NK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 128 QDLPNAMNAAEI 139
DL + +++E
Sbjct: 121 IDLFDEQSSSEE 132
|
Length = 219 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-19
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVET--VEYKNISFTV--WDVGG 70
E++I++VG GK+T+L +L + I P N T +E ++ D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-DAVLLVFANKQD 129
Q+ + R Y++ + + V D VE E +++ NK D
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120
Query: 130 LPNA 133
L +A
Sbjct: 121 LRDA 124
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-17
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 16/162 (9%)
Query: 23 VGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEY--KNISFTVWDVGGQDKIRP 76
VG GK+++L L GE+ T +V E + + D G D+
Sbjct: 3 VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGG 62
Query: 77 LW-----RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
L R + ++ VVDS DR+ +A+ + R L ++ + +++ NK DL
Sbjct: 63 LGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKIDLL 119
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
E+ + + A +GEG+ E + L
Sbjct: 120 EEREVEEL--LRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-15
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV---EYKNISFTVWDVGGQDKIRP 76
+L++G +GKT + KL G++ +T+ +I NV + K T+ DV G +K+R
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62
Query: 77 -LWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAV--LLVFANKQDLPN 132
L + + + ++FVVDS + + + + L+ +L + E +L+ NKQDL
Sbjct: 63 KLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFT 122
Query: 133 AMNAAEITDKL 143
A A +I + L
Sbjct: 123 AKPAKKIKELL 133
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-14
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 25/181 (13%)
Query: 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-------------TIGFNVETV 56
S E +I+++G AGKTT + L +V T T+ + ++
Sbjct: 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI 62
Query: 57 EYKNISFTVWDVG--GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
E V G GQ++ + +W + G I +VDS+ R A +++
Sbjct: 63 ELDE-DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSS-RPITFHAE----EIIDFL 116
Query: 115 ELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
R+ + ++V NKQDL +A+ +I + L L L + AT GEG + LD L
Sbjct: 117 TSRNPIPVVVAINKQDLFDALPPEKIREALKLELL---SVPVIEIDATEGEGARDQLDVL 173
Query: 174 S 174
Sbjct: 174 L 174
|
Length = 187 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 5e-13
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 18 MRILMVGLDAA-GKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 71
+I+++G D+ GKT++L + + TIG F +T+E K + +WD GQ
Sbjct: 1 FKIVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ R + Y++ G I V D +R+ + + +EL + +++ NK
Sbjct: 60 ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP----NIPIILVGNKS 115
Query: 129 DLPN 132
DL +
Sbjct: 116 DLED 119
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-12
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNISFTVWDVGGQDK 73
+IL++G GK+++L + + TIG F V+ TV+ K + +WD GQ++
Sbjct: 2 KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----RDAVLLVFANKQD 129
R L Y++ QG+I V D RD D L LNE + DAV ++ NK D
Sbjct: 62 FRTLTSSYYRGAQGVILVYDVTRRDTF----DNLDTWLNELDTYSTNPDAVKMLVGNKID 117
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N E+T + G R+ + T A + G+ + + L I
Sbjct: 118 KEN----REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 3e-11
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 74
+IL++G GK+++L + PTIG + + TV K + T+WD GQ++
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----RDAVLLVFANKQD 129
R L Y++N QG+I V D R+ D + E EL +D V ++ NK D
Sbjct: 76 RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGK---EVELYSTNQDCVKMLVGNKVD 131
|
Length = 211 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-10
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++++VG GK+++L + + IPTIG F +T+E K + +WD GQ++
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ QG + V D RD + +E+ R +E + +++ NK DL
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE----NVPIVLVGNKCDL 116
Query: 131 PN 132
+
Sbjct: 117 ED 118
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 8e-10
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GK+++L + G+ TIG F +T+E K + +WD GQ+
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D +R + + EL + + V+++ NK D
Sbjct: 61 RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIMLVGNKSD 116
Query: 130 LPN 132
L
Sbjct: 117 LEE 119
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-09
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI--GFNVETVEYKNISFTVWDVGGQD 72
+ +++ GL +GKT++ L G + T+ + + + +K SFT+ D G
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHV 60
Query: 73 KIRP--LWRH-YFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNEDEL-RDAV-LLVFAN 126
K+R L + +G++FVVDS V + + L+ +L+ EL ++ + +L+ N
Sbjct: 61 KLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACN 120
Query: 127 KQDLPNAMNAAEITDKL 143
KQ+ A +I L
Sbjct: 121 KQESFTARPPKKIKQAL 137
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-09
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ T G ++K + F ++DVGGQ R W H F++ +IFVV ++ D+V+ D
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 106 ELHRM----------LNEDELRDAVLLVFANKQDL 130
+R+ N ++ +++F NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-08
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDL 130
+ R + Y++ G+I V D D + + M N DE D ++ NK D+
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIK---NWMRNIDEHASEDVERMLVGNKCDM 120
Query: 131 PN 132
Sbjct: 121 EE 122
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-08
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++L++G GK+ +L + + I TIG F + T+E K + +WD GQ++
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G+I V D D++ V + E+ R +E+ + LLV NK DL
Sbjct: 64 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV-GNKCDL 119
Query: 131 PNA-----MNAAEITDKLGL 145
+ A E D+LG+
Sbjct: 120 TDKKVVDYTEAKEFADELGI 139
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+++++G GKT+++ + TT + + K I +WD GQ+
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ L Y+++ G I V D D D +V + EL +M + L++ NK D
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKID 116
Query: 130 LPN 132
L
Sbjct: 117 LER 119
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-07
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+PT G K + F ++DVGGQ R W H F N +IF V ++ D+V+E +
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228
Query: 106 ELHRM----------LNEDELRDAVLLVFANKQDL 130
+RM N + +++F NK DL
Sbjct: 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-07
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 48 TIG--FNVETVEYKNISFTV--WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
TIG F +E E + F++ WD GQ++ + + Y++ Q +I V D D +
Sbjct: 32 TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91
Query: 104 RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
R L L E++ +L + K+DL + + ++ + R+ + A +G
Sbjct: 92 RQWLEDALKENDPSSVLLFLVGTKKDLSSP-AQYALMEQDAIKLAREMKAEYWAVSALTG 150
Query: 164 EGLYE 168
E + +
Sbjct: 151 ENVRD 155
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-07
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 28/183 (15%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN------------IS 62
+++L +G GKTT LY+ + I T+G F + V Y + +
Sbjct: 5 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD GQ++ R L +F++ G + + D + R+ + ++ + ++
Sbjct: 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ NK DLP + A E+ DK G+ Y + T A +G+ + + ++ L + I
Sbjct: 125 LIGNKADLPDQREVSERQARELADKYGIP-------YFE-TSAATGQNVEKAVETLLDLI 176
Query: 178 ATK 180
+
Sbjct: 177 MKR 179
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ T G KN+ F ++DVGGQ R W H F++ +IFVV ++ D+V+ +
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205
Query: 106 ELHRML-----------NEDELRDAVLLVFANKQDL 130
++RM + +++L F NK+DL
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIIL-FLNKKDL 240
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-06
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ++
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFANKQ 128
R + Y++ G + V D R + D + R L ELRD V+++ NK
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKR----QTFDNVQRWLR--ELRDHADSNIVIMMAGNKS 127
Query: 129 DLPNAMNAAE 138
DL + + AE
Sbjct: 128 DLNHLRSVAE 137
|
Length = 216 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I+++G GKT + Y+ G T TIG F TVE + I +WD GQ++
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63
Query: 74 IR-PLWRHYFQNTQGLIFVVD 93
R + +HY++N ++FV D
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYD 84
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-06
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNISFTVWDVGGQD 72
++++VG GKT +L + K G + + I T+G V TV+ + +WD GQ+
Sbjct: 2 KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R + Y+++ L+ + D ++ R L +L E D V+++ NK D+
Sbjct: 62 RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEIL-EYAQSDVVIMLLGNKADM 118
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNIS--FTVWDVGGQDK 73
R+L++G GKT +L + E ++ I TIG F ++T+E I +WD GQ++
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVD 93
+ + + Y++ QG+ V D
Sbjct: 62 YQTITKQYYRRAQGIFLVYD 81
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-06
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I+++G GKT ++ + K G TIG F ++T+E K + +WD GQ++
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQDL 130
R + + Y+++ G I D R + + + + E E A VLL+ NK DL
Sbjct: 65 FRTITQSYYRSANGAIIAYDITRR----SSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-06
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 19 RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+++L + G +TTI + F + TVE + + +WD GQ+
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-GVDFKIRTVEINGERVKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ R + Y++ T G+I V D + + V + L + + VL+ NK D P
Sbjct: 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLV--GNKNDDP 123
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-06
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
++++VG GKTT + + GE + T+G V +++ I F VWD GQ+K
Sbjct: 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
L Y+ Q I + D R
Sbjct: 62 FGGLRDGYYIQGQCAIIMFDVTSR 85
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 9e-06
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 49 IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE 106
+ F ++TVE K I +WD GQ++ + Y+++ +G+I V D + E D+
Sbjct: 35 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----ETFDD 90
Query: 107 L---HRMLNEDELRDAVLLVFANKQD 129
L +M+++ DA LL+ NK D
Sbjct: 91 LPKWMKMIDKYASEDAELLLVGNKLD 116
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFTV--WDVGGQDK 73
+++ +G GK+ I+ + G V+ +PTIG + V+ V +N V +D+ G +
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDR-------VVEARDELHRMLNEDELRDAVLLVFAN 126
+ ++++TQG++ V D DR + E + E N + + V++V AN
Sbjct: 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGN---MENIVVVVCAN 118
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQ-STCATSGEGLYEGLDWLSNNI 177
K DL +E +L + + T A +GEG+ E L ++I
Sbjct: 119 KIDLTKHRAVSEDEGRL----WAESKGFKYFETSACTGEGVNEMFQTLFSSI 166
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-----VETVEYKNISFTVWDVGGQD 72
R++++G GK+++L + G + PT+G + +E I +WD GQ+
Sbjct: 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR-------DRVVEARDEL--HRMLNEDELRDAVLLV 123
+ R + R Y++N+ G++ V D +R D + EAR + HR V ++
Sbjct: 64 RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP---------VFIL 114
Query: 124 FANKQDLPN 132
+K DL +
Sbjct: 115 VGHKCDLES 123
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 33/169 (19%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET-----VEYKNISFTVWDVG 69
E ++++VG GKT++ +L +GE T G NV+ E K I VWD G
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQL-IGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFG 59
Query: 70 GQDKIRPLWRHYFQNTQGLIFVV----DSNDRDRV------VEARDELHRMLNEDELRDA 119
GQ+ + F ++ L +V ++ RV ++A
Sbjct: 60 GQEIYHATHQF-FLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGG----------VSP 108
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
V+LV D +I K I +G+G+ E
Sbjct: 109 VILV-GTHID---ESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+++++G + GK++I+ + E TIG F +TV + F +WD GQ++
Sbjct: 3 KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ I V D + +A+ EL + V+ + NK DL
Sbjct: 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118
Query: 131 PN 132
+
Sbjct: 119 ES 120
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-05
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 19 RILMVGLDAAGKTT----ILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L++GL +GK++ I + + TI V + N++ +WD GQD
Sbjct: 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD 60
Query: 74 IRPLWRHY-----FQNTQGLIFVVDSNDRD 98
+ F N LI+V D R+
Sbjct: 61 FMENYLTRQKEHIFSNVGVLIYVFDVESRE 90
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 71
++++VG A GKT++LY LGE PT+ N T V+ K + +WD GQ
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 72 DKIRPLWRHYFQNTQGLI-FVVDSND 96
+++RPL Y + LI F +D+ D
Sbjct: 63 ERLRPL--SYSKAHVILIGFAIDTPD 86
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-05
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 19 RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETV--EYKNISFTVWDVGGQD 72
++L++G + GKT+ L++ V+T+ I F V+TV K I +WD GQ+
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G I + D + + +D ++ V+LV NK D+ +
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV-GNKCDMED 120
Query: 133 -----AMNAAEITDKLGL 145
A ++ D+LG
Sbjct: 121 ERVVSAERGRQLADQLGF 138
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
L Y+ + Q I + D R
Sbjct: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
|
Length = 219 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-05
Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEYKNISFTVWDVGGQDK 73
+++++G +GK+++L +L GE T+ + V+ +WD GG+++
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + + ++ V D DR+ V L + +++ NK
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL--RKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 69
+I+++G GKT ++ + G P TIG F ++TVE K I +WD
Sbjct: 9 KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVD 93
GQ++ R + + Y+++ LI D
Sbjct: 65 GQERFRSITQSYYRSANALILTYD 88
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFN----VETVEYKNISFTVWDVGGQDK 73
+ L++G GK+ +L++ + TIG V V K++ +WD GQ++
Sbjct: 2 KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQDLP 131
R + R Y++ G + V D R+ + L R L D V+++ NK+DL
Sbjct: 62 FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP---DIVIILVGNKKDLE 118
Query: 132 NA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
+ + A+ + GL L T A +GE + E
Sbjct: 119 DDREVTFLEASRFAQENGLLFLE--------TSALTGENVEE 152
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET-VEYKNISFTV--WDVGGQ---D 72
I++VG A GKT +L + T +PT+ N V + WD GQ D
Sbjct: 3 IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYD 62
Query: 73 KIRPL 77
++RPL
Sbjct: 63 RLRPL 67
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L+ G +GK++I + + + TI + + N + +WD GQD
Sbjct: 1 KLLLXGRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGNXTLNLWDCPGQDV 60
Query: 74 IRPL---WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR----DAVLLVFAN 126
H FQ LI+V+D +D ++A L + L + DA + V +
Sbjct: 61 FFEPTKDKEHIFQXVGALIYVIDV--QDEYLKAITILAKAL--KQAYKVNPDANIEVLIH 116
Query: 127 KQDL 130
K D
Sbjct: 117 KVDG 120
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (89), Expect = 5e-04
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ +WD GQ++ R L Y +++ I V D +R + +LNE +D +
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
+ + NK DL + ++T + G+ ++ + T A +G +
Sbjct: 88 IALVGNKTDLGDLR---KVTYEEGMQKAQEYNTMFHETSAKAGHNI 130
|
Length = 176 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
E ++++VG GKTT + + GE IPT+G V +++ I F VWD GQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD 98
+K L Y+ Q I + D R
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRI 95
|
Length = 215 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 5e-04
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 28/166 (16%)
Query: 22 MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNI-SFTVWDVGG--- 70
+VGL AGK+T+L + K+ T +P +G V + SF + D+ G
Sbjct: 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG----VVRVDDGRSFVIADIPGLIE 60
Query: 71 ---QDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN--EDELRDAVLL 122
+ K R L RH + T+ L+ V+D + D VE + + L L + +
Sbjct: 61 GASEGKGLGHRFL-RH-IERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPGLAEKPRI 118
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
V NK DL +A E +L L L+ + + S A +GEGL E
Sbjct: 119 VVLNKIDLLDAEERFEKLKEL-LKELKGKKVFPIS--ALTGEGLDE 161
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 6e-04
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEY--KNISFTVWDVGGQDKIR 75
+++G GK+ +L++ + + P TIG F +E + I +WD GQ++ R
Sbjct: 6 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65
Query: 76 PLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R Y++ G + V D R + + + + N + V+ + NK DL
Sbjct: 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKADL 119
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 6e-04
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETV--EYKNISFTVWDVGGQD 72
++ L+VG GK IL L+ G + I + T+ + + + +WD GQ
Sbjct: 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR------DRVVEARDE 106
+ ++R Y + QG+I V D +R DR ++ DE
Sbjct: 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE 106
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 8e-04
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 29/139 (20%)
Query: 22 MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNISFTVWDVGG---- 70
+VGL AGK+T+L + K+ T +P +G V + SF V D+ G
Sbjct: 164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV-VRVDGGE--SFVVADIPGLIEG 220
Query: 71 --QDK---IRPLWRHYFQNTQGLIFVVD--SNDRDRVVEA----RDELHRMLNEDELRDA 119
+ +R L RH + T+ L+ V+D D +E R+EL + +L +
Sbjct: 221 ASEGVGLGLRFL-RH-IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEK 276
Query: 120 VLLVFANKQDLPNAMNAAE 138
+V NK DLP E
Sbjct: 277 PRIVVLNKIDLPLDEEELE 295
|
Length = 369 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.001
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQDKIR 75
++++++G GKT++L++ T+ T+G F ++ NIS +WD G+++
Sbjct: 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNIS--IWDTAGREQFH 58
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
L Y + +I D ++ + E D + + D + V NK DL
Sbjct: 59 GLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLT-DTANEDCLFAVVGNKLDL 112
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.001
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 23 VGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIRPL 77
VG GKTT + + GE + T+G V + + I F VWD GQ+K L
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 78 WRHYFQNTQGLIFVVDSNDR 97
Y+ Q I + D R
Sbjct: 61 RDGYYIQGQCAIIMFDVTAR 80
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.003
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN---VETVEYKNISFTVWDVGGQ--- 71
+++++G A GKT++L G PT+ N V+ + ++WD GQ
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61
Query: 72 DKIRPLWRHYFQNTQ--GLIFVVDSNDRDRVVEAR 104
D++R L + +T L F VD+ D VE++
Sbjct: 62 DRLRSL---SYADTHVIMLCFSVDNPDSLENVESK 93
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.003
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 18 MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEY---KNISF 63
++I+++G A+GKT+++ YK +G + F + N++
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIG--------LDFFSRRITLPGSLNVTL 52
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVL 121
VWD+GGQ + Y Q + V D + D + + +NE+ +
Sbjct: 53 QVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112
Query: 122 LVFANKQDLP 131
++ NK DL
Sbjct: 113 VLVGNKTDLE 122
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 181 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.98 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.98 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.98 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.98 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.98 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.98 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.98 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.98 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.98 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.98 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.98 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.98 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.97 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.97 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.97 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.97 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.97 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.97 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.97 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.97 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.97 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.97 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.97 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.97 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.97 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.97 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.97 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.97 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.97 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.97 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.97 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.97 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.96 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.96 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.96 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.96 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.96 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.96 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.96 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.96 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.96 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.96 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.96 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.96 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.96 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.96 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.96 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.95 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.95 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.95 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.95 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.95 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.95 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.95 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.95 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.94 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.94 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.94 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.94 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.94 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.94 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.93 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.93 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.93 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.93 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.93 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.93 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.92 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.92 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.92 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.92 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.92 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.92 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.91 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.91 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.91 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.91 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.91 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.91 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.91 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.91 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.91 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.91 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.91 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.91 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.91 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.9 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.9 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.9 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.9 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.89 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.89 | |
| PTZ00099 | 176 | rab6; Provisional | 99.89 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.89 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.89 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.89 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.88 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.88 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.88 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.88 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.88 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.88 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.88 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.88 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.88 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.87 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.87 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.87 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.87 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.86 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.86 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.86 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.86 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.86 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.85 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.85 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.85 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.85 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.85 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.84 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.84 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.84 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.84 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.83 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.83 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.83 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.83 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.83 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.83 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.82 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.82 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.82 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.81 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.81 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.81 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.81 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.8 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.79 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.79 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.79 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.78 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.78 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.78 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.78 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.78 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.78 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.78 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.77 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.77 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.77 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.77 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.77 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.77 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.77 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.76 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.76 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.76 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.75 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.75 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.75 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.74 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.74 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.74 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.74 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.74 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.74 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.74 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.74 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.74 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.73 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.73 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.73 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.72 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.72 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.71 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.7 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.7 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.69 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.69 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.68 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.68 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.68 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.67 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.66 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.66 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.66 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.65 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.65 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.64 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.61 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.58 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.57 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.56 | |
| PRK13768 | 253 | GTPase; Provisional | 99.56 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.56 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.55 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.54 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.54 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.52 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.51 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.5 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.49 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.48 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.48 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.48 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.47 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.47 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.46 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.45 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.45 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.44 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.44 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.43 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.42 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.42 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.41 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.4 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.36 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.35 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.35 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.34 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.34 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.33 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.33 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.32 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.32 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.32 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.3 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.29 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.29 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.28 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.27 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 99.26 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.25 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.25 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.23 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.22 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.19 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.18 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.17 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.16 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.13 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.09 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.09 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.07 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.05 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.03 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.02 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.0 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.97 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.97 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.96 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.95 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.95 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.93 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.92 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.9 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.89 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.88 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.87 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.86 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.86 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.85 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.84 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.83 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.82 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.8 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.8 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.78 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.78 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.72 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.71 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.7 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.7 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.7 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.7 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.69 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.69 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.69 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.69 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.68 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.67 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 98.62 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.61 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.61 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.58 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.58 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.57 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.52 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.5 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.5 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.49 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.47 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.39 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.39 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.37 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.37 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.34 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.33 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.32 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.32 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.29 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.27 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.26 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.24 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.18 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.17 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.13 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.13 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.07 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.07 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.05 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.04 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.04 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.04 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 98.03 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.02 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.97 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.96 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.94 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.94 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.92 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.91 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.88 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.86 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.86 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.79 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.78 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.73 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.71 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.67 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.64 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.63 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.59 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.57 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.56 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.55 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.55 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.54 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.53 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.53 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.52 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.51 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.51 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.5 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.49 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.49 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.48 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.47 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.46 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.46 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.45 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.44 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.4 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.4 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.38 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.37 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.37 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.37 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.37 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.34 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.34 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.34 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.3 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.29 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.29 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.28 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.27 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.26 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.26 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.25 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.25 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.25 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.24 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.23 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.22 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.21 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.2 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.2 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.19 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.18 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.17 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.17 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.17 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.16 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 97.16 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.16 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.16 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.16 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.15 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.15 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.14 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.12 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.12 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 97.12 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.11 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.11 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.11 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.11 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.1 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 97.1 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.08 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 97.08 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.07 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.06 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.05 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.05 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.03 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.03 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.03 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.03 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.02 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 97.01 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.01 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.01 | |
| PRK06696 | 223 | uridine kinase; Validated | 97.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 96.99 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 96.98 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 96.98 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=226.30 Aligned_cols=181 Identities=99% Similarity=1.463 Sum_probs=162.0
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||+.++++.++.++.+.+||+++|++|||||||++++..+.+....||.+.+...++.+++.+++||+||+++++..|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 89888888777777788999999999999999999999888877788989888888888999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++++|++|+|+|+++++++.....++...+......++|+++|+||+|+.+....+++...++......+.+.+++|||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999888888776544467999999999999888778888888877666666778889999
Q ss_pred CCCCCHHHHHHHHHHHhhhcC
Q 030193 161 TSGEGLYEGLDWLSNNIATKA 181 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~~ 181 (181)
++|+|++++|++|.+.+.+||
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~~ 181 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANKA 181 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999999886
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=219.80 Aligned_cols=180 Identities=78% Similarity=1.280 Sum_probs=159.3
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||+.+...+++.+.+..+||+++|++|||||||++++..+.+....||.+..+..++..++.+++||+||+++++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 89888888888888888999999999999999999998888777778888888788888999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++++|++|+|+|+++++++.....++.+.+......++|+++|+||.|+.+....+++...+....++...++++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888876544457899999999999776666777777777666667788999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
++|.|++++|++|.+.+.++
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988764
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=210.42 Aligned_cols=166 Identities=87% Similarity=1.375 Sum_probs=145.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+...+||+++|++|+|||||++++..+.+....||.+..+..+..+.+.+++||+||+++++..+..+++++|++|+|+
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 44567999999999999999999998877777778888888778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|++++.+++...+++...+......++|+++|+||+|+.+....+++...+....+....+.++++||++|.|++++|++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999988877654467999999999999876666777777776666667788999999999999999999
Q ss_pred HHHHhh
Q 030193 173 LSNNIA 178 (181)
Q Consensus 173 i~~~l~ 178 (181)
|.+.+.
T Consensus 169 l~~~~~ 174 (175)
T smart00177 169 LSNNLK 174 (175)
T ss_pred HHHHhc
Confidence 988754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=208.30 Aligned_cols=164 Identities=76% Similarity=1.285 Sum_probs=142.4
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++...++|+++|++|+|||||++++....+....||.+.....+...++.+++||++|+++++..+..+++++|++++|
T Consensus 4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 34456799999999999999999999988877777888888777778889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+|++++.++.....++.+.+......++|+++|+||+|+.+....+++.............+++++|||++|.|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999999998887764445789999999999987666677777666555555667899999999999999999
Q ss_pred HHHH
Q 030193 172 WLSN 175 (181)
Q Consensus 172 ~i~~ 175 (181)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9865
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=206.34 Aligned_cols=161 Identities=20% Similarity=0.380 Sum_probs=133.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE----EEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||.|+.||..+.|. ++..|+++++.. ++.+.++++||||+||++|++...+||+++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 67899999999999999999999999987 678888877643 3446689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCCcceE-EEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWY-IQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~ 167 (181)
+|||+++.+||.++..|+.++-+ ....++|.++|+||+|+.+..... +....+ +...+++ ++|+||+++.|++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~f----a~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEF----ADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhh-hccCCCCeEEEeeccccHhheecCHHHHHHH----HHhcCCcceeecccCCccCHH
Confidence 99999999999999998887644 444689999999999997643211 111112 2223445 8999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
+.|..+...+..+
T Consensus 162 ~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 162 DAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877643
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=202.10 Aligned_cols=158 Identities=93% Similarity=1.436 Sum_probs=138.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|++|||||||++++..+.+....||.+.....+....+.+++||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999888877778888888777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.++....+++.+.+......++|+++++||+|+.+....+++...+....+..+.+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998888876544456899999999999766556666666666666667788999999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=201.34 Aligned_cols=173 Identities=55% Similarity=1.001 Sum_probs=158.6
Q ss_pred HHHHHHhhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccc
Q 030193 5 FTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 83 (181)
|++++++... .+..+|+++|+.||||||+++++.........||.+++...+...++.+++||.+|+..++..|+.|++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 3456666665 889999999999999999999999988878899999999999999999999999999999999999999
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC-CcceEEEEcccCC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~ 162 (181)
++|++|||+|.++.+.+....+.+.+.+......++|+++++||+|+.+....+++...+.+..+. .+.+.++.||+.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999887766789999999999999888888998888877776 7789999999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
|+|+.+.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=202.74 Aligned_cols=163 Identities=20% Similarity=0.374 Sum_probs=139.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.-+.+|++++|+.++||||||+++..+.|. ++-+|+++++. ++.+. .+++++|||+|||+|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 356799999999999999999999999998 56788887763 34444 58999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|||+++..+|++..+|+.....+....++.+++|+||.||.++. ++....+...++..+..|+++||+.|.|+++
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr---qvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR---QVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh---hhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 9999999999999999999999888776678999999999998863 3333333344555566899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|..|..++..
T Consensus 176 lFrrIaa~l~~ 186 (221)
T KOG0094|consen 176 LFRRIAAALPG 186 (221)
T ss_pred HHHHHHHhccC
Confidence 99999887754
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=197.08 Aligned_cols=180 Identities=83% Similarity=1.311 Sum_probs=173.6
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||..++++++..+.....+|+++|--++||||++.+|...++.+..||.++++..+.+++.++++||.+|++.++..|.+
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|+++.+++|||+|.++.+.+....+.+.+++......+.|+++++||.|+....+..++...+.+..+.++.|.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999887788999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
.+|+|+.+.++|+.+.+..+
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999988765
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=198.85 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=134.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccceEEE--EEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~~--~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|+.++|||||+-|+..+.|.+. .||++..+.. +... .+++.||||+|+++|..+.++|+++++.+|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4689999999999999999999999999865 7899877654 3333 489999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||+++.+||.....|+.+.-.+.. +++-+.+||||+|+.+. ...++.. ..++.++..+||+||+++.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~-----~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQ-----AYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHH-----HHHHhcCCEEEEEecccccCHH
Confidence 99999999999999999888766544 77888899999999873 2333322 2234466789999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|..|.+.+..
T Consensus 157 ~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 157 EIFQAIAEKLPC 168 (200)
T ss_pred HHHHHHHHhccC
Confidence 999999998764
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=189.47 Aligned_cols=179 Identities=45% Similarity=0.831 Sum_probs=162.7
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
|| +++-+.+.-.+++.++|+++|..||||||++++|.+.......||.++++....++++++++||.+|+...+..|+.
T Consensus 1 mg-~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 1 MG-LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred Cc-HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHH
Confidence 66 44444444446789999999999999999999999999888899999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (181)
|+.+.|++|||+|.+++.+++.....+...+......+.|+++++||.|+..+...+++...+.+..+ +...|+++.||
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 99999999999999999999999998888888777788999999999999988888999988887777 77899999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
+.+|+++.+.++|+++.+.++
T Consensus 160 ~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 999999999999999988753
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=199.31 Aligned_cols=166 Identities=49% Similarity=0.891 Sum_probs=141.0
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+++..++|+++|++|||||||++++.+..+....||.++....+...++.+++||+||++.++..+..+++.+|+++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 33445678999999999999999999999987767778888777777788899999999999999989999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+|++++.++.....++...+......++|+++|+||+|+......+++...+.....+...++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 99999999999988888888776544468999999999999776566666666655444556789999999999999999
Q ss_pred HHHHHH
Q 030193 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
|+++.+
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=197.32 Aligned_cols=170 Identities=54% Similarity=0.975 Sum_probs=144.4
Q ss_pred HHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccc
Q 030193 6 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 85 (181)
.++.+.......++|+++|++|+|||||++++..+.+....||.+..+..+...+..+.+||+||++++...+..+++.+
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence 34444443455789999999999999999999988887778888888888888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
|++++|+|+++++++.....++..++......++|+++++||+|+......+++.+.+.....+..++++++|||++|.|
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 99999999999989988888888887654446799999999999976556667777666555555678899999999999
Q ss_pred HHHHHHHHHH
Q 030193 166 LYEGLDWLSN 175 (181)
Q Consensus 166 i~~~~~~i~~ 175 (181)
+++++++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=196.39 Aligned_cols=161 Identities=62% Similarity=1.075 Sum_probs=137.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++|||||||++++.+..+..+.||.+..+..++..++.+++||+||+++++..+..+++.+|++++|+|++++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988777788888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
++.....|+...+......+.|+++|+||+|+.+....+++......... .++.+.+++|||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999988887654456899999999999766566666555443322 23356788999999999999999999876
Q ss_pred hh
Q 030193 178 AT 179 (181)
Q Consensus 178 ~~ 179 (181)
.+
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 54
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=191.94 Aligned_cols=157 Identities=66% Similarity=1.132 Sum_probs=134.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++++|||||++++....+....||.+.....+++.+..+++||+||++++...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888777778888887788888899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++.....++...+......++|+++|+||+|+.+.....++...+........+++++++||++|.|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88877787877766544457999999999999766555666665654444455678999999999999999999865
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=194.04 Aligned_cols=171 Identities=34% Similarity=0.607 Sum_probs=144.9
Q ss_pred HHHHHHhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccccc
Q 030193 5 FTKLFSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82 (181)
Q Consensus 5 ~~~~~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 82 (181)
|.++++ ... .+.++|+++|++|||||||++++.+..+....||.+.....+...++++++||+||+..++..+..++
T Consensus 4 ~~~~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 82 (184)
T smart00178 4 FYDILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF 82 (184)
T ss_pred HHHHHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 445555 442 77899999999999999999999998876666777777777778889999999999999999999999
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC-------CcceEE
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYI 155 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 155 (181)
.++|++++|+|++++.++.....++.+++......++|+++|+||+|+......+++...+.+.... .+.+.+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999999999999998888888887765444679999999999998777788888877655432 246779
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 030193 156 QSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 156 ~~~S~~~~~~i~~~~~~i~~~ 176 (181)
++|||+++.|++++++||.++
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999875
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=198.25 Aligned_cols=164 Identities=23% Similarity=0.402 Sum_probs=135.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..+..+||+++|+++||||+++.+|..+.|. +...|.++++ ..+... .+.+++|||+|+++|+....+|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 4477899999999999999999999999987 4556777665 445444 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+++|||+++..+|+++.. |.+.+.++....+|.++||||+|+..+ .++....+...+...+++++||||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 999999999999999999 555566666678999999999998763 2233333334444556789999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
++|-.+.+.+..+
T Consensus 164 eaF~~La~~i~~k 176 (207)
T KOG0078|consen 164 EAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=188.73 Aligned_cols=157 Identities=50% Similarity=0.858 Sum_probs=130.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc--ccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
+|+++|++|||||||++++.+..+ ....||.+.....+...++.+++||+||++++...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 345788887777777888999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
+.++.....++..++.... ..++|+++|+||+|+.+....+++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9888888777776655322 24799999999999987655566665555443344467899999999999999999986
Q ss_pred H
Q 030193 175 N 175 (181)
Q Consensus 175 ~ 175 (181)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=198.60 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=124.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
..+||+++|++|+|||||+.++..+.+. .+.||.+..+. .++...+.+++|||+|+++|+..++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999999885 55677765443 2333457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCccCCcc-eEEEEcccC
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDK--------LGLHSLRQRH-WYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~S~~ 161 (181)
||++++.+|+.+...|...+.... .++|+++|+||+|+.+... .+.+... .....++..+ +++++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 999999999999765554444322 5799999999999965422 1111110 0111112233 589999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|++++|+++.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987654
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=197.22 Aligned_cols=156 Identities=20% Similarity=0.376 Sum_probs=122.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.|+++|+.|||||||++++..+.|.. +.+|.+..+ ..+...+ +.+++||++|+++|+..+..+++++|++|+|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999999998864 456665443 3455544 889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCC-cceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++++++|+.+..|+.. +.+....+.|+++|+||+|+.+..... +....+ ++. .++.+++|||++|.|++++|+
T Consensus 82 vtd~~Sf~~l~~w~~~-i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----a~~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 82 ITKKETFDDLPKWMKM-IDKYASEDAELLLVGNKLDCETDREISRQQGEKF----AQQITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred CcCHHHHHHHHHHHHH-HHHhCCCCCcEEEEEECcccccccccCHHHHHHH----HHhcCCCEEEEecCCCCCCHHHHHH
Confidence 9999999999877654 444444679999999999996432211 111111 111 245799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987754
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=188.72 Aligned_cols=157 Identities=36% Similarity=0.615 Sum_probs=135.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+|+++|++|||||||++++.+.....+.||.+.....+...+..+++||+||++.++..+..+++++|++++|+|++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999874446678888887888889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC---CcceEEEEcccCCC------CCHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR---QRHWYIQSTCATSG------EGLYEG 169 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~------~~i~~~ 169 (181)
+++....++..+.......++|+++|+||+|+.+.....++...+....+. ...+++++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999998888888765444679999999999998877777777766655442 24578999999998 899999
Q ss_pred HHHHHH
Q 030193 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
|+||.+
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=198.67 Aligned_cols=160 Identities=18% Similarity=0.309 Sum_probs=128.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|.+|+|||||+++|.++.+....||.+..+.......+.+.+||++|+++|...+..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888877666666778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------------------CCHhH---HHhhhCCC------c
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------------------MNAAE---ITDKLGLH------S 147 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---------------------~~~~~---~~~~~~~~------~ 147 (181)
++|..+..||..+... ...++|+++|+||+|+.+. ...++ +.+..... .
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999998887653 2357899999999998651 11111 11111100 0
Q ss_pred cCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.....++|+||||++|.|++++|..+.+.+.
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0011257999999999999999999998765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=194.37 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=124.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++.+..+. ...||.+..+. .+.. ..+.+++||++|++++...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 579999999999999999999998886 45667664443 3333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.+|.....|+..+.......++|+++|+||+|+.+... .++.. ...+..++++++|||++|.|++++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-----~~a~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-----NLAREFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-----HHHHHhCCEEEEEecCCCCCHHHHH
Confidence 9999999999987654443322335799999999999865322 22211 1122345689999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987654
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=187.81 Aligned_cols=154 Identities=40% Similarity=0.684 Sum_probs=132.7
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
|+++|++|||||||+++|.+..+. .+.||.+.....++.++.++++||++|+++++..+..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 789999999999999999988765 5678888877778888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcccCC------CCCHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATS------GEGLYEGLD 171 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~------~~~i~~~~~ 171 (181)
++.....|+..+.... +++|+++|+||+|+......+++...+....+ ++.++++++|||++ ++|++++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9998888888776543 57999999999999877666776666555544 55688999999888 999999999
Q ss_pred HHHH
Q 030193 172 WLSN 175 (181)
Q Consensus 172 ~i~~ 175 (181)
.+..
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=185.67 Aligned_cols=157 Identities=69% Similarity=1.199 Sum_probs=139.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++|||||||++++.+..+....+|.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777788888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++.....++..+.......+.|+++|+||+|+......+++...+.........++++++|+++|.|+++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999998888877655568999999999999877667777776665545556789999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=173.93 Aligned_cols=179 Identities=70% Similarity=1.198 Sum_probs=172.0
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||.-+++++.+.+..+..+|+.+|-.++||||++..|.-.......||.++++..+.++++.|++||.+|++..+..|.+
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 89999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|+....++|||+|.++...++..++.+.+++........|+++.+||.|++++...+++...+.+..++.+.|.+.++|+
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999887788999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
.+|.|+.+-+.|+.+.+..
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999987654
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=189.47 Aligned_cols=164 Identities=50% Similarity=0.879 Sum_probs=132.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE-----CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|||||||++++....+....||.+........ .++.+++|||||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999998887667777766544333 46899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC-CcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+|++++.++.....++..+.......++|+++|+||+|+......+++.......... ..+++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 99999988888887777766654333579999999999987655555555544433222 23467899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=195.49 Aligned_cols=158 Identities=17% Similarity=0.255 Sum_probs=125.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|+.|+|||||+.+|.++.+.. +.++.+..+ ..+...+ +.+++||++|+++|...+..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 356899999999999999999999987763 334544433 3344444 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||++++.+|+.+..|+..+... . ++.|+++|+||+|+.... ..++.+.. ++..++++++|||++|.|++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~-~-~~~piilVGNK~DL~~~~~v~~~~~~~~-----a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEH-A-PGVPKILVGNRLHLAFKRQVATEQAQAY-----AERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECccchhccCCCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 999999999999998877776443 2 589999999999996532 22222221 12345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=189.51 Aligned_cols=163 Identities=36% Similarity=0.660 Sum_probs=139.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+..+|+++|++|||||||++++.+..+..+.||.+.....+...+..+++||+||+++++..+..+++.++++++|+|+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~ 96 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDA 96 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEEC
Confidence 56899999999999999999999998877777788777778888889999999999999998889999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-----------CCcceEEEEcccCCC
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHWYIQSTCATSG 163 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~S~~~~ 163 (181)
++..++.....++...+......+.|+++++||+|+......+++...+..... ..+.+++++|||++|
T Consensus 97 ~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 176 (190)
T cd00879 97 ADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred CcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCC
Confidence 999899888888888877555567999999999999876677777776654322 124578999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++|++|.+.+
T Consensus 177 ~gv~e~~~~l~~~~ 190 (190)
T cd00879 177 QGYGEAFRWLSQYL 190 (190)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998754
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=184.39 Aligned_cols=162 Identities=24% Similarity=0.398 Sum_probs=133.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCc-ccceE----EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t-~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||+.+|..+.|....|+ ++.++ ..++...+++.||||+|+++|+.+.++|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4579999999999999999999999999876664 66544 345566789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|||++.+++|.+.+.|+.++-.--..+++..++|+||+|... ...+.++.++.+++....-++||||++.+|+...
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999977666543222225677899999999542 3445566667777777778999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+.++.++.+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999998764
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=189.81 Aligned_cols=160 Identities=17% Similarity=0.208 Sum_probs=122.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEE--ECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+.++..+.+. .+.||.+..+. .+. ...+++++|||+|+++|+..+..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999987 46777764432 233 345889999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCccCCcce-EEEEcccCCCC
Q 030193 94 SNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (181)
++++.+|+++. .|+..+ .... .++|+++|+||+|+.+... ...+........++..+. +++||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i-~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPEL-RHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999985 555544 4332 4799999999999965311 001111111112223344 68999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030193 165 GLYEGLDWLSNNIAT 179 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~ 179 (181)
|++++|+.+.+.+..
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987654
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=191.55 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=123.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EE--EECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||++++..+.+. .+.||.+..+. .+ +...+.+++|||+|+++|...++.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999886 45677764442 23 3345789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCccCCcc-eEEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRH-WYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~S~ 160 (181)
|||++++.+|+.+...|...+.... ++.|+++|+||+|+.+... ...+....+...++..+ .+|+||||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 9999999999998544444444333 5799999999999854210 00111111222223344 37999999
Q ss_pred CCCCC-HHHHHHHHHHHhhh
Q 030193 161 TSGEG-LYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~-i~~~~~~i~~~l~~ 179 (181)
++|.| ++++|+.+.+....
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999986544
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=191.50 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=121.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.++.+. .+.||.+..+. .+...+ +++++||++|+++|...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999885 56777765443 344444 789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHh--------hhCCCccCCcc-eEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITD--------KLGLHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~--------~~~~~~~~~~~-~~~~~~S~~~~ 163 (181)
++++++|+.+..+|...+.... +++|+++|+||+|+.+.....+ +.. .......+..+ ++|++|||++|
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999999865555554433 5799999999999865322111 100 00001112233 68999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++|+.++++.
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998753
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=185.26 Aligned_cols=157 Identities=49% Similarity=0.918 Sum_probs=131.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+|+++|++|+|||||++++.+..+....||.+.....+.. ..+.+++||+||++.+...+..+++.+|++++|+|+.++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777888777666654 357999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.++.....++...+......+.|+++|+||+|+......+++...+....+ ...++++++|||++|.|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 889998888888876544457999999999999765556666665544333 235678999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=190.27 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=120.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EE--EECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|+|||||++++.++.+. .+.||.+..+. .+ +...+.+++|||+|+++|...++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999999886 45677654432 23 334578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-H--------hHHHhhhCCCccCCcce-EEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-A--------AEITDKLGLHSLRQRHW-YIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 162 (181)
|++++++|+.+...|...+.+.. ++.|+++|+||+|+.+... . ..+........++..+. +|+||||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999997443444444333 5799999999999854210 0 00111111222233443 799999999
Q ss_pred CCC-HHHHHHHHHHHhh
Q 030193 163 GEG-LYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~-i~~~~~~i~~~l~ 178 (181)
|+| ++++|..+.++..
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998644
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=185.95 Aligned_cols=163 Identities=50% Similarity=0.863 Sum_probs=141.1
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+..+.++|+++|++|+|||||++++.+..+....||.+.....+...+..+.+||++|+..+...+..+++.+|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 34668999999999999999999999988777778888887788888999999999999988888888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|+.+..++.....++...+......++|+++++||+|+.+....+++...+.........++++++||++|+|+++++++
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99998888888888877766544457999999999999877667777777776666666778899999999999999999
Q ss_pred HHH
Q 030193 173 LSN 175 (181)
Q Consensus 173 i~~ 175 (181)
|.+
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=188.48 Aligned_cols=157 Identities=20% Similarity=0.344 Sum_probs=124.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.++.+.. ..+|.+..+. .+.. ..+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999998764 3456554442 2333 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||++++.+|+.+..|+...... ..++.|+++|+||+|+..... .++.... ++..++++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999998888766443 235789999999999975432 2222221 1223568999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=191.77 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=126.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||++++.++.+. ...||.+..+. .++...+.+++|||||++++...+..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999998876 45566655443 233445788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++++|+....|+..+.......++|+++|+||+|+.+.. ..++... + .+..+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-L----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999998888777654444578999999999986432 2212111 1 112245799999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|+++.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=196.67 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=122.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-E--EECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|||||||+++|.++.|. .+.||.+..+.. + +...+.++||||+|+++|...++.+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 35789999999999999999999999887 456777655432 2 3345889999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCccCCcce-EEEEcc
Q 030193 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTC 159 (181)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
|||++++.+|... ..|+..+ .... ++.|+++|+||+|+.+... ...+........++..++ +|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i-~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEI-MDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHH-HHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999986 4555444 3322 4789999999999864210 011111122222333455 689999
Q ss_pred cCCCC-CHHHHHHHHHHHhhh
Q 030193 160 ATSGE-GLYEGLDWLSNNIAT 179 (181)
Q Consensus 160 ~~~~~-~i~~~~~~i~~~l~~ 179 (181)
|++|. |++++|..+...+.+
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHH
Confidence 99997 899999999887643
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-32 Score=185.16 Aligned_cols=162 Identities=22% Similarity=0.360 Sum_probs=132.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE----EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+|+.++|+.|+|||+|+.+|+...|.. ...|.++.+ ..++.+.+++++|||+|++.|++...+||+.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 457899999999999999999999999874 455777655 345667799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|||+++.++|..+..|+.+..+.. ..+..+++++||+|+.... ++.++.+..++++.+..++++||++++|++++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999876653 3689999999999996542 22222233333334456889999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|..+...+..+
T Consensus 160 F~nta~~Iy~~ 170 (216)
T KOG0098|consen 160 FINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHH
Confidence 99888877643
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=183.14 Aligned_cols=161 Identities=14% Similarity=0.278 Sum_probs=131.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE----EEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.-.||.++|++|+|||||+|++.++.|. .+..|++..+. .++.+-+.+++|||+|+++|+++...+++.+|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 55689999999999999999999999988 46678876553 24445578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCC---CCeEEEEEeCCCCCCC---CCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+|||+.++.+|+++..|-.+++.+.... .-|.|++|||+|+... ....+-.+.... .+.++||||+|||+.
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAKEA 163 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEeccccc
Confidence 9999999999999999999988875532 3699999999998652 222222222221 134689999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030193 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~ 178 (181)
.|++++|+.+.+...
T Consensus 164 ~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 164 TNVDEAFEEIARRAL 178 (210)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988654
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=184.77 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=121.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccce-EEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|||||||++++.++.+.. ..||.+.. ...+... .+.+++||+||+++|...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999888763 45555422 2234344 467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++.+|+....|+..+.......+.|+++|+||+|+.+.... .+....+. +..+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999888877765444467999999999998653221 11111111 11235899999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=189.16 Aligned_cols=160 Identities=20% Similarity=0.410 Sum_probs=125.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE------------CCEEEEEEEcCCCCCccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY------------KNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~------------~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
..+||+++|++|||||||++++.+..+. ...+|.+.... .+.. ..+.+++||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4689999999999999999999998876 34566654432 2322 2478999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+.. ..++... + .+..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA-L----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH-H----HHHcCCeEEEE
Confidence 999999999999999999999998888776554444578999999999996532 2222211 1 11123579999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhc
Q 030193 159 CATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
||++|.|++++|+++.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=187.20 Aligned_cols=157 Identities=21% Similarity=0.297 Sum_probs=124.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++..+.+.. ..||.+..+. .+... .+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3689999999999999999999887753 4556553322 33333 567889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.+|+...+|+..+.......+.|+++|+||+|+..... .++. ..+ .+..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNL----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHH----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999998888887654456899999999999975422 1111 111 11223579999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
.++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=186.30 Aligned_cols=161 Identities=20% Similarity=0.375 Sum_probs=133.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE----EEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.-+||.++|++++|||-|+.+|..++|. +..+|+++.+.. ++.+.++.+||||+|+++|++...+|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 67789999999999999999999999997 667788877644 4556689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|||+++..+|+++..|+.+.... ...++++++|+||+||.+.. .+..+.....++.++..++++||.++.|++.+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lr---aV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLR---AVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhcc---ccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 999999999999999888776554 44799999999999997632 11122223333445567899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+.+...+..
T Consensus 168 F~~~l~~I~~ 177 (222)
T KOG0087|consen 168 FERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-31 Score=182.21 Aligned_cols=155 Identities=22% Similarity=0.377 Sum_probs=123.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||+++++.+.+. ...||.+........ ..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999987765 456677665544332 3578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|++++.+++.+..|+..+.... .++|+++|+||+|+.......+..+ + .+...++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-F----HRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-H----HHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999887777665432 2799999999999974432222211 1 1223567999999999999999999
Q ss_pred HHHHhhh
Q 030193 173 LSNNIAT 179 (181)
Q Consensus 173 i~~~l~~ 179 (181)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9987753
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=183.08 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=122.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++.++.+. ...||.+..+ ..+... .+.+++||++|++++...+..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999998875 4455655333 223333 367889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|+++..+|+....|+..+.......+.|+++|+||+|+.+... .++..... +..+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999888887776554446799999999999875332 22222211 12245799999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-31 Score=182.22 Aligned_cols=157 Identities=38% Similarity=0.731 Sum_probs=129.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc-------ccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+|+++|++|+|||||++++.+... ....||.+.....+.+.+..+++||+||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999976432 1345677777778888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--cCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+.+++++.....++...+......++|+++++||+|+......+++...+.... ....+++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99998888888888888877765556899999999999977666566555443321 2334678999999999999999
Q ss_pred HHHHHH
Q 030193 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-31 Score=191.04 Aligned_cols=156 Identities=23% Similarity=0.359 Sum_probs=126.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|||||||+++++.+.+. .+.||.+..+....+ ..+.+++||++|+++|...+..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999988876 457777766544332 4579999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|||++++.+|+.+..|+..+... ..+.|+++|+||+|+..... .+++ . + .+..+++|++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~-~----~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-T-F----HRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-H-H----HHhcCCEEEEcCCCCCCCHHH
Confidence 999999999999998877766543 25799999999999864322 2222 1 1 123456899999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+|++|.+.+.
T Consensus 163 ~f~~l~~~~~ 172 (219)
T PLN03071 163 PFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHH
Confidence 9999998775
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-31 Score=187.97 Aligned_cols=157 Identities=22% Similarity=0.341 Sum_probs=123.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE---CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|||||||+++|.+..+. .+.||.+..+ ..+.. ..+.+++||++|++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999998876 4567776543 23443 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCccCCcc-eEEEEcccCCCCC
Q 030193 92 VDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 165 (181)
||++++.+|+.+..|+..+... ....++|+++|+||+|+.+ ....+++...... .+ .++++|||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE-----NGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH-----cCCceEEEEeCCCCCC
Confidence 9999999999998777655332 1235789999999999973 2333333322211 12 4789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|+++.+.+.+
T Consensus 156 v~e~f~~l~~~l~~ 169 (201)
T cd04107 156 IEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-31 Score=190.94 Aligned_cols=162 Identities=16% Similarity=0.212 Sum_probs=124.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEE--ECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|+|||||+++|.++.+. .+.||....+. .+. ...+.+.+||++|++.|...++.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 479999999999999999999998877 56777765553 233 34578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH--------HHhhhCCCccCCcc-eEEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE--------ITDKLGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (181)
|++++++|+.+..+|...+.... ++.|+++|+||+|+.+... ..+ +....+...++..+ .+|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999999877766555433 6799999999999965311 111 11111222222334 4899999999
Q ss_pred CCC-HHHHHHHHHHHhhh
Q 030193 163 GEG-LYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~-i~~~~~~i~~~l~~ 179 (181)
+.| ++++|+.+..+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 885 99999999886543
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=188.98 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=121.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EE--EECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.||+++|++|+|||||+++|.++.+.. +.||.+..+. .+ +...+.+++||++|+++|...+..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999998864 4566654432 22 2234789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh---------hCCCccCCc-ceEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK---------LGLHSLRQR-HWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~S~~~~ 163 (181)
++++.+|+.....|...+.... .+.|+++|+||+|+.+.....+.... .....+... .+++++|||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 9999999988754444444332 57999999999999764332221111 111111122 267999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030193 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~ 178 (181)
.|++++|+++.+.+.
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998765
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=184.95 Aligned_cols=159 Identities=18% Similarity=0.281 Sum_probs=122.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||+++|.++.+.. +.||.+..+. .+...+ +.+++||++|+++|...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999998874 6788876653 444444 78999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|++++++|..+..|+....... ....| ++|+||+|+...... +.+. .......+..++++++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999988877665432 23567 678999999642111 1111 1111112233468999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987653
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=183.79 Aligned_cols=157 Identities=19% Similarity=0.366 Sum_probs=123.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+. .+.||.+..+ ..+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 68999999999999999999999886 4466665433 23333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++++++.+..|+..+. +.....+|+++|+||+|+.+... .++.... .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~-~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIK-TYSWDNAQVILVGNKCDMEDERVVSSERGRQL-----ADQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHH-HhCCCCCCEEEEEECcccCcccccCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999888776653 33335789999999999965432 2222111 11234579999999999999999
Q ss_pred HHHHHHhhhc
Q 030193 171 DWLSNNIATK 180 (181)
Q Consensus 171 ~~i~~~l~~~ 180 (181)
+++.+.+.+|
T Consensus 156 ~~l~~~~~~~ 165 (165)
T cd01865 156 ERLVDIICDK 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999987654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=182.04 Aligned_cols=156 Identities=26% Similarity=0.416 Sum_probs=122.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||+++++++.+. .+.||.+..+ ..+.. ..+.+++||++|++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999876 4566666543 23433 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
|++++.+++....|+..+..... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999988887776654332 1468999999999987422 222222211 122357899999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
++++++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=183.40 Aligned_cols=157 Identities=17% Similarity=0.283 Sum_probs=121.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccc-ceEEEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|+|||||++++.++.+.. ..+|.+ .....+.. ....+++||+||+++|...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999988764 345543 22223333 3467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++.+|.....|+..+.......++|+++|+||+|+.+..... +....+. +..++++++|||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999998887777654444679999999999986432211 1111111 11235789999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=184.06 Aligned_cols=159 Identities=22% Similarity=0.376 Sum_probs=125.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|+|||||++++.+..+.. +.||.+... ..+... .+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999998764 466665443 334333 3689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++++|+.+.+|+..+.. ....++|+++|+||+|+.+.. ..++..... +..+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEE-HASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHH-hCCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999887766544 333579999999999997532 222222211 22345799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030193 169 GLDWLSNNIATK 180 (181)
Q Consensus 169 ~~~~i~~~l~~~ 180 (181)
+|+++.+.+..+
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999988653
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=182.99 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=118.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|||||||+.++..+.+. .+.||....+ ..+.. ..+++++|||+|++.+...+..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 68999999999999999999998876 4556654322 12233 44789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhC--------CCccCCcc-eEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG--------LHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~--------~~~~~~~~-~~~~~~S~~~~ 163 (181)
++++++|......|...+.... ++.|+++|+||+|+.+.. ..+.+..... ....+..+ .++++|||++|
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 9999999999765555444432 579999999999996432 1111111100 00111223 47899999999
Q ss_pred CCHHHHHHHHHHH
Q 030193 164 EGLYEGLDWLSNN 176 (181)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (181)
.|++++|+.+.+.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=176.61 Aligned_cols=156 Identities=36% Similarity=0.684 Sum_probs=133.6
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
|+++|++|+|||||++++.+..+. ...||.+.....+......+.+||+||+..++..+..+++.+|++++|+|+.++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 789999999999999999999876 5678888887777778899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++.....++..........++|+++|+||+|+.+....+++.............++++++|+++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888776554467899999999998776555555555555544455678999999999999999999865
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=183.11 Aligned_cols=157 Identities=20% Similarity=0.307 Sum_probs=121.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|||||||++++.+..+.. ..+|..... ..+.. ..+.+++||+||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999988763 344443222 22223 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++++++|+....|+..+.......++|+++|+||+|+.+.. ..++..... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998887776655444578999999999987532 222222111 11235899999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987653
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=182.80 Aligned_cols=156 Identities=20% Similarity=0.278 Sum_probs=122.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++.+..+.. ..+|.+..+. .... ....+++||+||++++...+..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887653 3455543322 2233 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.+|+....|+..+.......+.|+++|+||+|+.+... .++... + .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE-L----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH-H----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999988888776644445789999999999865432 222211 1 11224578999999999999999
Q ss_pred HHHHHHh
Q 030193 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~l 177 (181)
+++.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=183.76 Aligned_cols=157 Identities=24% Similarity=0.333 Sum_probs=122.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|||||||++++.++.+. .+.||.+..+. .+... .+.+++||+||+++|...+..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999886 55677765543 33333 4689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+++++++.....|+..+.......++|+++|+||+|+.+.... ++....+ .++.+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999888877655433345789999999998653221 1111111 11223478999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999887653
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=180.36 Aligned_cols=154 Identities=21% Similarity=0.380 Sum_probs=120.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++|+++|++|+|||||++++.++.+. .+.||.+..+. .+...+ +.+++||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999886 45677765443 344443 68899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++++|+.+..|+...... ...+.|+++|+||.|+...... .+....+ .+..+.++++|||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999998877765433 2247999999999998654321 1111211 112234789999999999999999
Q ss_pred HHHHH
Q 030193 172 WLSNN 176 (181)
Q Consensus 172 ~i~~~ 176 (181)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=187.76 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=120.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|++|+|||||+++|.++.+.. ..||.+..+ ..+... .+.+++||++|+++|...+..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888764 455655332 223333 36789999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+++.+|..+..|+..+..... ..+.|+++|+||+|+.+..... +.... ..+..+++++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA----LARRLGCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH----HHHHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999888776644321 2578999999999986532211 11111 1122345799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+..
T Consensus 157 ~l~~~l~~ 164 (190)
T cd04144 157 TLVRALRQ 164 (190)
T ss_pred HHHHHHHH
Confidence 99987653
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=187.41 Aligned_cols=158 Identities=24% Similarity=0.477 Sum_probs=125.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEEE---CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+||+++|++|+|||||+++|.+..+.. ..||.+..+. .+.. ..+.+++||++|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988764 4566665443 2333 24789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++++|..+..|+..+........+|+++|+||+|+.+... .++. ..+ .+..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKL----AKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHH----HHHhCCEEEEEeCCCCCCHHH
Confidence 999999999999998888776544334688999999999875322 2222 111 122346899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|++|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=180.12 Aligned_cols=157 Identities=21% Similarity=0.379 Sum_probs=123.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+. .+.+|.+..+ ..+... .+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999998875 3455555433 334443 46889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||++++++|..+..|+...... ...+.|+++|+||+|+..... .++..... +..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 9999999999999877765432 235789999999999865432 22222211 123468999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+.+.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=187.02 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=122.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC---CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|+|||||+++|.+..+. .+.||.+..+. .+... .+.+++||++|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998876 45677765543 34432 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
||++++++|+.+..|+..+..... ..++|+++|+||+|+.+.. ..++... + .+..+++++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-~----~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-F----AQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEECCCCCCHH
Confidence 999999999999877666544321 2357899999999996432 1121111 1 11223578899999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=168.51 Aligned_cols=168 Identities=34% Similarity=0.657 Sum_probs=157.1
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.+-.....+.++|-.+||||||+|....+.+. +..||.+++...++-..+.+.+||.+|+.+|+..|+.|++.+++++
T Consensus 14 ~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 14 NSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 344467889999999999999999999987766 6689999999999999999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||+|+++++.++.....+...+.+....++|+++.+||.|+..+....++..++++..+..+.+-+|-+|+++..|++.+
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
.+||.+.-.
T Consensus 174 ~~Wli~hsk 182 (186)
T KOG0075|consen 174 LDWLIEHSK 182 (186)
T ss_pred HHHHHHHhh
Confidence 999998643
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=176.21 Aligned_cols=157 Identities=21% Similarity=0.370 Sum_probs=120.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccc--eEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|+|||||++++.++.+.. ..++.+. ....+...+ ..+++||+||++++...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888764 3445443 334455554 688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++.+|+....|+..+... ...++|+++|+||+|+..... .++........ ....++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKN----GMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHc----CCcEEEEEECCCCCCHHH
Confidence 99999999999888777766442 335799999999999875421 22221111100 113689999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+++++.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=180.31 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE---CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||+++|.++.+. .+.||.+..+. .+.. ..+.+++|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999876 44556554432 2333 3468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCccCCcce-EEEEcccCCCCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 165 (181)
|++++.+|+.....|...+... .+++|+++|+||+|+.... ..++... + ....++ ++++|||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES-V----AKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHH-H----HHHcCCcEEEEccCCCCCC
Confidence 9999999999876554444332 2578999999999986532 1111111 1 112223 789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|..+.+.+..
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=180.06 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE---EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+++++++.+. .+.||.+..+.. .....+.+++||++|++++...+..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999998875 445665533322 22345789999999999999988888999999999999
Q ss_pred CCCcccHHHHHHHHHHHhc--CCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 94 SNDRDRVVEARDELHRMLN--EDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~--~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+++++++.....|+..+.. .....++|+++|+||+|+.+... .++... + ....++++++|||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA-C----ATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-H----HHHhCCcEEEeecCCCCCHHHH
Confidence 9999999998887754432 12225789999999999965322 111111 1 1223457899999999999999
Q ss_pred HHHHHHH
Q 030193 170 LDWLSNN 176 (181)
Q Consensus 170 ~~~i~~~ 176 (181)
|++|.+.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999863
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=177.36 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccccc-CcccceEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+||+++|++|+|||||+.++....+.... |+.+.....+...+ +.+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 48999999999999999999988776433 33332223344444 7799999999975 2456889999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCC-cceEEEEcccCCCCCHHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
+++.+|+.+..|+..+.......++|+++|+||+|+.... ..++.........++ .+++|++|||++|.|++++|+.+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999998888777655444678999999999984311 011111111111112 24689999999999999999999
Q ss_pred HHHh
Q 030193 174 SNNI 177 (181)
Q Consensus 174 ~~~l 177 (181)
.+.+
T Consensus 155 ~~~~ 158 (158)
T cd04103 155 AQKI 158 (158)
T ss_pred HhhC
Confidence 8653
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=170.07 Aligned_cols=162 Identities=20% Similarity=0.395 Sum_probs=128.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--E-EEE-CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--T-VEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~-~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+|++++|...+|||||+.++.+..|.. ...|.++.+. . +.. +.+++++|||+|+++|+...-.++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 567899999999999999999999999864 3456665542 2 222 3479999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+++|+++.++|..+..|.-. +......+.|+|+|+||||+.++.. +..+.+...+++.++.+||+||+.+.|++++
T Consensus 99 LmyDitNeeSf~svqdw~tq-Iktysw~naqvilvgnKCDmd~eRv---is~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQ-IKTYSWDNAQVILVGNKCDMDSERV---ISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EEEecCCHHHHHHHHHHHHH-heeeeccCceEEEEecccCCcccee---eeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 99999999999888776544 5666778999999999999976421 1112222333344557899999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|+.++..+.++
T Consensus 175 Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 175 FERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=183.37 Aligned_cols=157 Identities=22% Similarity=0.392 Sum_probs=124.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. .+.||.+..+ ..+... .+.+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35789999999999999999999998876 4566766443 344433 368899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.+|+.+..|+..+.... ...|+++|+||+|+..... .++..... +..+++++++|+++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999988877754432 4689999999999875432 12222111 1234679999999999999
Q ss_pred HHHHHHHHHhh
Q 030193 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~l~ 178 (181)
++|++|.+.+.
T Consensus 157 ~lf~~l~~~~~ 167 (199)
T cd04110 157 EMFNCITELVL 167 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=183.05 Aligned_cols=157 Identities=18% Similarity=0.402 Sum_probs=122.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|||||||++++.++.+. ...+|.+..+.. +.. ..+.++|||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 345666554432 333 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++++|+++..|+..+... ...++|+++|+||+|+.... ..++..... ...+++++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998877665443 33478999999999986432 222222211 223458999999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|+++.+.+...
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=177.85 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=117.0
Q ss_pred EEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
|+++|++|+|||||++++.+..+.. +.++....+. .+.. ..+.+++||+||++++...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988763 4455443322 2333 3467999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHH--------hhhCCCccCCcc-eEEEEcccCCCCC
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEIT--------DKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~--------~~~~~~~~~~~~-~~~~~~S~~~~~~ 165 (181)
++++|+.....|...+.... +++|+++|+||+|+..... .+++. ........+..+ .++++|||++|.|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 99999998764555444332 5799999999999865321 11111 000001112223 3789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|+.+.+.+..
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=181.70 Aligned_cols=157 Identities=23% Similarity=0.375 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||+++|.+..+.. +.+|.+..+ ..+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998864 566665433 23333 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++++|..+..|+...... ...+.|+++|+||+|+.+.... .+....+. +..+++++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999998876665432 2246899999999998753321 11111111 12245799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99998764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=177.92 Aligned_cols=152 Identities=18% Similarity=0.343 Sum_probs=119.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE----CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
+||+++|++|+|||||++++.+..+. ...||.+..+. .+.. ..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998876 34566665542 2333 35789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|++++++++....|+..+.... .++|+++|+||+|+..... .++..... +..+++++++|++++.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999998888776654322 4799999999999865432 22222111 12245799999999999999
Q ss_pred HHHHHHHH
Q 030193 169 GLDWLSNN 176 (181)
Q Consensus 169 ~~~~i~~~ 176 (181)
++++|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=178.37 Aligned_cols=157 Identities=18% Similarity=0.313 Sum_probs=122.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+++||++|++++...+..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988653 344544433 223333 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++.+++.+..|+.+..... .+++|+++|+||.|+.... ..++..... ...+++++++|+++++|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999988777664432 3679999999999987432 222322221 223467999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|.++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=177.61 Aligned_cols=154 Identities=20% Similarity=0.365 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+. ...++.+..+ ..+... .+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998875 3444544333 223333 468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+++++++..+..|+...... ..+++|+++|+||+|+.... ..++...... ..+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998877765332 23689999999999986532 2222222221 223689999999999999999
Q ss_pred HHHHHHh
Q 030193 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~l 177 (181)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=176.76 Aligned_cols=155 Identities=21% Similarity=0.382 Sum_probs=122.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|||||||++++.++.+. ...|+.+..+ ..+...+ +.+++||+||++++...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 579999999999999999999998876 4456665443 3344444 6899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++.+++....|+..+... ...++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 9999999999998877765443 22468999999999986532 222222221 123457999999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
++++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=175.59 Aligned_cols=159 Identities=14% Similarity=0.302 Sum_probs=122.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EE--EECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||++++.++.+.. ..++.+.... .+ +...+.+++||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 456899999999999999999999988764 4566655432 23 334578899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+|||++++++++....|...+.... ...++|+++|+||+|+.... ..++..+..... ..++++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CCCeEEEEECCCCCC
Confidence 9999999999999888776655422 12468999999999986432 333333221111 123789999999999
Q ss_pred HHHHHHHHHHHh
Q 030193 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~~~~~i~~~l 177 (181)
++++|+.+.+.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=173.33 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=121.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
++.+||+++|++|+|||||+++|+++.+. .+.||.+..+ ..+...+ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56789999999999999999999999875 4567766443 2344433 6889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
++|+|++++.+|+....|+...... .++|+++|+||+|+.+.. ..+++.+.++.. +++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 9999999999998887777654222 479999999999986432 223343333321 3578999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|++++|+.+.+.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999987653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=178.13 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=118.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.++.+.. ..|+....+ ..+... .+.+++||++|++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988763 445543222 233333 4668899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCccCCcc-eEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~S~~~~ 163 (181)
+.++.+|+.....|...+... .++.|+++|+||+|+.+............ ....+..+ .++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999876666655543 46899999999999865422111111000 01111222 36899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++|+.+.+.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-30 Score=175.29 Aligned_cols=154 Identities=16% Similarity=0.275 Sum_probs=118.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE----EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..++.+.... .++...+.+++||++|+++|...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988763 3344443322 22334578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|++++.++.....|+..+... .++.|+++|+||+|+.... .++.. .+ ....+++++++||++|.|++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999998888777665432 2478999999999985321 11111 11 1223468899999999999999999
Q ss_pred HHHHhhh
Q 030193 173 LSNNIAT 179 (181)
Q Consensus 173 i~~~l~~ 179 (181)
+.+.+.+
T Consensus 153 l~~~~~~ 159 (161)
T cd04124 153 AIKLAVS 159 (161)
T ss_pred HHHHHHh
Confidence 9987654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=174.38 Aligned_cols=155 Identities=20% Similarity=0.407 Sum_probs=122.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+.. ....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998774 566665432 23333 457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+++++++.....|+..+..... ++.|+++++||+|+.... ..++..... +..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 999999999999888777655433 679999999999987422 222322211 122357999999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99998875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=174.78 Aligned_cols=155 Identities=20% Similarity=0.396 Sum_probs=120.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.||+++|++|||||||++++++..+. ...++.+..+ ..+..++ ..+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998876 4455555443 3344443 67999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++++|+....|+..+..... .+.|+++++||+|+..... ..+....+. +..+++++++|++++.|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999888887655432 3699999999999954321 222111111 12246799999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
++.+.+
T Consensus 156 ~i~~~l 161 (161)
T cd01861 156 KIASAL 161 (161)
T ss_pred HHHHhC
Confidence 998754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=176.65 Aligned_cols=158 Identities=21% Similarity=0.396 Sum_probs=121.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcc-cccccccccccEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~-~~~~~~~~~~d~~i~ 90 (181)
.+||+++|++|+|||||++++.+..+. ...++.+..+ ..+... .+.+++||++|+++++ ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 579999999999999999999988876 3455655433 234433 4789999999999887 468888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCC---CCCH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS---GEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i 166 (181)
|||++++.+|+....|...........++|+++|+||+|+...... .+....+. +..++++++|||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999887766655443457999999999998654321 22222221 12236799999999 8999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=177.09 Aligned_cols=154 Identities=26% Similarity=0.446 Sum_probs=123.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||+++|.+..+. .+.+|.+..... +.. ..+.+++||++|++++...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999877 456676555543 333 44789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++++++|..+..|+..+..... .++|+++++||+|+.+ ....++..... +..+.+|++||++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999977776554432 4699999999999876 22333322211 12235899999999999999999
Q ss_pred HHHHHhh
Q 030193 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~l~ 178 (181)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=171.47 Aligned_cols=157 Identities=20% Similarity=0.351 Sum_probs=127.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
-++.+|+|++|+|||||+-+|..+.|. ++..|++.++ ..+++ ..++++|||++|+++|+.+...|+++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 456689999999999999999999887 5666766554 44544 458999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
||+++.+||.+..+|+.++...- +.+|=++|+||+|.+........ .....+.++++.+||+|+++.+|++..|.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~---dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTE---DARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehH---HHHHHHHhcCchheehhhhhcccchHHHH
Confidence 99999999999999998876543 58999999999998765322211 11222345667899999999999999999
Q ss_pred HHHHHhh
Q 030193 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~l~ 178 (181)
-|.+.+.
T Consensus 163 cit~qvl 169 (198)
T KOG0079|consen 163 CITKQVL 169 (198)
T ss_pred HHHHHHH
Confidence 8887653
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=180.51 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=112.5
Q ss_pred cceEEEEcCCCCChHHHHh-hhhcCCc-----c-cccCcccc-e-EE-----------EEEECCEEEEEEEcCCCCCccc
Q 030193 17 EMRILMVGLDAAGKTTILY-KLKLGEI-----V-TTIPTIGF-N-VE-----------TVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~-~l~~~~~-----~-~~~~t~~~-~-~~-----------~~~~~~~~~~~~d~~g~~~~~~ 76 (181)
.+||+++|++|+|||||+. ++.+..+ . .+.||.+. . +. .++...+.+++|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 5799999999999999995 6655433 2 34567642 1 11 23344689999999999753
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHHH
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------AAEIT 140 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------------~~~~~ 140 (181)
....+++++|++++|||++++.+|+++...|...+.... ++.|+++|+||+|+.+... ...+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 456688999999999999999999999764544444332 4789999999999864210 01122
Q ss_pred hhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
...+...++..+++|+||||++|.|++++|+.+.++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 222223334456689999999999999999999864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=182.85 Aligned_cols=160 Identities=23% Similarity=0.405 Sum_probs=125.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+....|+.+... ..+... .+.+.+||+||++++...+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 567899999999999999999999988766667766544 334333 4688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
|||++++++|......|...+... ...+.|+++|+||+|+...... ++... + ....+++++++||+++.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-L----AKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999988776655432 2246799999999998654221 22211 1 11234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|++|.+.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (211)
T PLN03118 167 QCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=182.45 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc-ceEEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG-FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~-~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+++|+++.+. .+.||.+ .....+... .+.++||||+|++.|...+..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999998886 4456664 222334443 4789999999999999888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcC--------CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNE--------DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--------~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
++++++|+....|+..+... ....++|+++|+||+|+.. ....+++...... ..++.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 99999999998887776542 1235789999999999964 3344444443321 12457999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++|++|.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=179.23 Aligned_cols=155 Identities=17% Similarity=0.314 Sum_probs=119.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc--ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|+|||||+++|+++.+.. +.+|.+..+ ..+... .+.+++||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988753 556665443 234443 36788999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
||++++.+|+....|+..+... . .+.|+++|+||+|+..... .++... + ....+++++++||+++.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-E-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-F----ADEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-C-CCCCEEEEEEcccccccccccCccCHHHHHH-H----HHHcCCeEEEEeCCCCCC
Confidence 9999999998887766655432 2 4789999999999864321 111111 1 122345789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++++++.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=175.91 Aligned_cols=156 Identities=18% Similarity=0.267 Sum_probs=121.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.++.+. ...+|.+..+ ..+.. ..+.+++||+||+++|...+..+++.++++++|+|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 68999999999999999999988875 4456655333 22333 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcc-eEEEEcccCCCCCHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 170 (181)
++++++++....|...+.......++|+++++||.|+..... .++... + .+..+ .+++++||+++.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-L----SQQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-H----HHHcCCceEEEeeCCCCCCHHHHH
Confidence 999999999988777665543345799999999999865332 122111 1 11122 579999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
+++...+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99987653
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=182.54 Aligned_cols=160 Identities=20% Similarity=0.352 Sum_probs=126.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. ...+|.+..+ ..+... .+.+++||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999998876 4566766554 334443 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|||++++.+|+.+..|+..+... ...++|+++|+||+|+...... ++....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988877665443 2357999999999998654322 12222221 12356899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|+++...+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=177.81 Aligned_cols=150 Identities=23% Similarity=0.331 Sum_probs=119.7
Q ss_pred EcCCCCChHHHHhhhhcCCcc-cccCcccceEEEE--E--ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 23 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--E--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 23 ~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~--~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+|++|||||||+++++.+.+. .+.||.+..+... . ...+.+++||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 599999999999999988876 4567877665433 2 2458999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
.+|..+..|+..+... . .++|+++|+||+|+.......+.. ...+..++++++|||++|.|++++|.++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~-~-~~~piilvgNK~Dl~~~~v~~~~~-----~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRV-C-ENIPIVLCGNKVDVKDRKVKAKSI-----TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHh-C-CCCCEEEEEECcccccccCCHHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999998876666543 2 579999999999986432211111 11233467899999999999999999999876
Q ss_pred hh
Q 030193 178 AT 179 (181)
Q Consensus 178 ~~ 179 (181)
..
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 53
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=175.59 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=113.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||+.++.+..+... .||. ... ..+.. ..+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999998887643 4443 222 12333 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---------hHHHhhhCCCccCCcc-eEEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---------AEITDKLGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (181)
|++++.+|+.....|...+... ..+.|+++|+||+|+...... ..+.........+..+ .++++|||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 9999999998865455444432 246899999999998643210 0000000111112223 3799999999
Q ss_pred CCCHHHHHHHHHH
Q 030193 163 GEGLYEGLDWLSN 175 (181)
Q Consensus 163 ~~~i~~~~~~i~~ 175 (181)
|.|++++|+.+.-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=173.49 Aligned_cols=157 Identities=14% Similarity=0.206 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE-E--EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+||+++|++|+|||||++++.++.+....++....+ . .+....+++++||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999988865444332222 1 2333568999999999998888777778999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+++.+++....+|...++... .+.|+++|+||+|+.+.... +++.... ..+. ...++++|||+++.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM--NEFR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHH--HHHh-cccEEEEeccccccCHHHHH
Confidence 999999998776766555433 47999999999999765432 1111100 0000 01268999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
+.+.+.+.
T Consensus 157 ~~~~~~~~ 164 (166)
T cd01893 157 YYAQKAVL 164 (166)
T ss_pred HHHHHHhc
Confidence 99988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=173.94 Aligned_cols=156 Identities=21% Similarity=0.436 Sum_probs=122.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+. ...++.+... ..+...+ +.+++||+||++++...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988875 3345555433 3344444 68999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+.++.+++.+..|+....... ..++|+++|+||+|+.... ..+.... +. +..+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999988887666554432 2579999999999987532 2222222 21 2234679999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+++.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998765
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=175.17 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccc--------ccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPL--------WRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~--------~~~~~~~ 84 (181)
+||+++|++|||||||++++.++.+. .+.||.+... ..+...+ +.+++|||||...+... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998876 3566665333 2333444 78899999997654321 2344688
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEccc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|||++++++|+.+..|+..+.... ...++|+++|+||+|+.... ..++... +.. +..++++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~-~~~---~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSV-LVR---KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHH-HHH---HhcCCcEEEecC
Confidence 999999999999999999888777665432 23579999999999996532 2222211 110 123467999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++|+.+.+.+..
T Consensus 157 k~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 157 KYNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999987653
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=170.61 Aligned_cols=158 Identities=15% Similarity=0.268 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||++++.+..+.. ..++.+... ..+... .+.+++||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988653 344544333 233343 367889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
|++++++++....|...++.... ..++|+++|+||+|+..+ ...++........ ...+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCceEEEEECCCCCCHH
Confidence 99999998888776665544322 237999999999999742 2333332222111 12579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++++++.+.+.+
T Consensus 157 ~l~~~i~~~~~~ 168 (172)
T cd01862 157 QAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999987664
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-29 Score=169.98 Aligned_cols=155 Identities=25% Similarity=0.437 Sum_probs=121.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..|+.+..+ ..+.. ..+.+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988753 555555433 22333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++++++....|+..........+.|+++|+||+|+.... ..++..... +..+++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999888876655544444679999999999997433 222222211 12356799999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998753
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=180.27 Aligned_cols=159 Identities=18% Similarity=0.309 Sum_probs=124.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||++++.+..+. ...+|.+..+. .+.. ..+.+++||++|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999998775 34566655432 2333 3467899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.+|+....|+...... ...+.|+++|+||+|+.+.. ..++..+.. +..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999988877765433 23579999999999986532 222222211 2234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=164.66 Aligned_cols=162 Identities=22% Similarity=0.354 Sum_probs=130.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EE--ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.-+|++++|+.|+|||.|+.+|....+. +..+|.++.+.. ++ .+.++++||||+|+++|++....|++.+-+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 45689999999999999999999999887 456788776532 33 35589999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+|+++.++|.....|+.+...-.. +++-+++++||.|+..+.+..-+ ....+.+...+-+.++|+++|+|+++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~Vtfl---EAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFL---EASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhhHH---HHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999888655433 67889999999999765332222 222333444557889999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|-.....+..|
T Consensus 163 Fl~c~~tIl~k 173 (214)
T KOG0086|consen 163 FLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHH
Confidence 98888776543
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=168.55 Aligned_cols=157 Identities=18% Similarity=0.312 Sum_probs=123.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.+..+.. ..++....+. .++...+.+++||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999988763 3444433222 223345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+.++.+|.....++..+.......++|+++|+||+|+... ...++..... ++.+.+++++|++++.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999998888877654468999999999999762 1222221111 12235799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=171.56 Aligned_cols=160 Identities=18% Similarity=0.297 Sum_probs=118.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+.||+++|++|||||||++++.+..+. .+.||.+..+ ..+.. ..+.+++||++|++++...+..++.++|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 468999999999999999999998876 3456655432 23333 3468899999999999999888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCccCCc-ceEEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLG--------LHSLRQR-HWYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~S~~~ 162 (181)
|++++++|..+...|...+... ..+.|+++|+||+|+.+..... ++..... ....... .+++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999988876555555432 2478999999999986532211 1110000 0000111 24789999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
|.|++++|+++.+..
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=172.39 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=118.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCcccceEEE--EE---ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVET--VE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~--~~~-~~~~t~~~~~~~--~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+||+++|++|||||||++++.+. .+. .+.+|.+..+.. +. .....+++||+||++.+...+..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 444 456676655422 22 23489999999999999998999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|+|++++.++.....|+....... .++|+++|+||+|+.+...... ....+. ...+.+++++|++++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999988877776654432 4699999999999865432221 111111 11235789999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998864
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=173.32 Aligned_cols=155 Identities=16% Similarity=0.236 Sum_probs=113.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE---EEEEECCEEEEEEEcCCCCC-cccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||+++++.+.+. .+.++....+ ..++...+.+++||+||+++ +...+..+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 5899999999999999999988775 3445543222 22333456799999999985 34556778899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCC-CCHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG-EGLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~~i~~~ 169 (181)
++++++|+.+..|+..+..... ..++|+++|+||+|+.... ..++... + .+..+.++++||++++ .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK-L----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH-H----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999988876655443221 3579999999999985432 2222111 1 1122347999999999 599999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
|..+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=166.96 Aligned_cols=162 Identities=22% Similarity=0.425 Sum_probs=129.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEE--EEE---CCEEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
...+++.++|++-+|||||++.++.+.+.. ..||.+++++. ++. ..+++++|||+|+++|++...+|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 457899999999999999999999999874 57888877632 332 347899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
++|+|.++..+|+.+..|+.+.......+. +-..+|++|+|+.... ++..+.....+...+..++|||+++|.|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR---qVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR---QVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc---cccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999887665544444 4457999999997542 111112222223344579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+.|+.+.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=177.75 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=115.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc--ceEEEEEE--CCEEEEEEEcCCCCCcccccccccc-cccEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~-~~d~~i~ 90 (181)
+||+++|++|+|||||+++|.++.+. ...++.+ .....+.. ....+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999887774 3344442 33333433 557899999999982 23344556 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++.+|....+|+..+.......++|+++|+||+|+.+... .++.. .+ ....+++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-AC----AVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-HH----HHHcCCeEEEecCCCCCCHHH
Confidence 999999999999888777665543345799999999999865432 12111 11 122345789999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=165.08 Aligned_cols=157 Identities=21% Similarity=0.348 Sum_probs=127.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--E--EEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
-+||+++|..|+|||.|+++|..+-|+ ....|+++.+. . ++.+++++++|||+|+++|++...+|++.++.+|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 579999999999999999999998876 66778876653 3 445668999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+|++-..+|....+|+.++-. +...++.-|+|+||.|+.+..+ .+++...+ .+.+...+.++||++-.|++.+|
T Consensus 87 ydiscqpsfdclpewlreie~-yan~kvlkilvgnk~d~~drrevp~qigeef----s~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQ-YANNKVLKILVGNKIDLADRREVPQQIGEEF----SEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EecccCcchhhhHHHHHHHHH-HhhcceEEEeeccccchhhhhhhhHHHHHHH----HHhhhhhhhhhcccchhhHHHHH
Confidence 999999999998887766533 3335788899999999987633 33333333 23345578899999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
..+.-.+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 98876654
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=172.02 Aligned_cols=157 Identities=21% Similarity=0.287 Sum_probs=117.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-E--EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+++|.+..+. ...++..... . ......+.+++||+||++++......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999998874 4444443222 1 222345789999999999988888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCccCCcce-EEEEcccCCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (181)
++++.+|......|...+.... .++|+++|+||+|+.+...... +............++ +++++|+++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999888877766655433 4799999999999876543211 111111111122233 79999999999
Q ss_pred CHHHHHHHHHH
Q 030193 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~i~~~~~~i~~ 175 (181)
|++++++++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=160.34 Aligned_cols=180 Identities=56% Similarity=0.945 Sum_probs=166.9
Q ss_pred CcchHHHHHHhhhcc-ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccc
Q 030193 1 MGLSFTKLFSKLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 79 (181)
|+--++.+++.+... +..+|+++|--|+||+++.-++.-.+..++.||.+++...+.+++.++++||..|+...+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 566778888888775 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
-|+.+.+.+|||+|.++.+........+..++.+..+++..+++++||.|........|....+++..++++.|.+|++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999888888899999988888899999999999988777888888899988899999999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|.+|+|+++.++|+.+-+.++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988765
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=172.23 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=121.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc-cCccc-ceEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|++|+|||||++++++..+... .+|.. .....+...+ +.+++||++|+..+...+..+++.+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999887643 34442 3333444545 7899999999999999888999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+++.+++....|+..+.......++|+++|+||+|+..... .++..+... ...+.+++++||++|.|++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999988877776654445799999999999865311 212221111 12234789999999999999999
Q ss_pred HHHHHhh
Q 030193 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~l~ 178 (181)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=167.84 Aligned_cols=154 Identities=21% Similarity=0.355 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++++..+.. ..++..... ..+.. ....+++||++|++.+...++.+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988753 334443322 22333 3467999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++++++....|+..+..... .++|+++|+||+|+..... .+++.... +..+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999888877666544322 3799999999999874322 22222221 1224578999999999999999
Q ss_pred HHHHHHh
Q 030193 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~l 177 (181)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=161.92 Aligned_cols=151 Identities=23% Similarity=0.439 Sum_probs=119.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+... .+|.+..... +.. ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999987753 5666655443 333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-C-CCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-N-AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+.++++++....|+..+.... ..+.|+++++||+|+. . ....++...... ..+.+++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999888988888766655542 2469999999999996 2 223333333222 245689999999999999999
Q ss_pred HHHH
Q 030193 171 DWLS 174 (181)
Q Consensus 171 ~~i~ 174 (181)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=166.91 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccce-EEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.||+++|++|+|||||++++.+..+.. ..|+.... ...+... .+.+++||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999888753 45555432 2334443 4678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+++..+++....++..++......+.|+++|+||+|+.... ..++..... +..+++++++|++++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999998888776555678999999999986432 222221111 12235789999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-28 Score=164.39 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=120.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|++|||||||++++++..+. ...++.+... ..+... .+.+++||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999988765 3445444222 234444 47899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
++++++.....++..+........+|+++|+||+|+.... ..++...... +.+.+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999998888887765544579999999999987522 2222222211 12257899999999999999999
Q ss_pred HHHHh
Q 030193 173 LSNNI 177 (181)
Q Consensus 173 i~~~l 177 (181)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=162.04 Aligned_cols=157 Identities=20% Similarity=0.370 Sum_probs=118.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|+|||||++++.+..+. ...++.+.. ...+...+ ..+++||++|++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999977765 345555433 23344444 678999999999999988899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+|+.++.++.....|+..+ ......++|+++|+||+|+.+.... .+....+. +...+++++||+++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l-~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREI-EQYANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHH-HHhCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 99999988988887765543 3222247999999999998654322 22222221 111257899999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
++.+.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=165.03 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=114.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+.||+++|++|+|||||++++....+. ...+|....+. .+... ...+.+||++|++.+......+++.++++++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 358999999999999999999977765 33444433322 23333 367899999999988887777889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-H------HHhhhCCCccCCcc-eEEEEcccCCCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-E------ITDKLGLHSLRQRH-WYIQSTCATSGE 164 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~S~~~~~ 164 (181)
|++++++|......|...+.... +++|+++|+||+|+.+..... + +.........+..+ .++++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999998765555544332 469999999999985421100 0 00000001111122 378999999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
|++++|+++.+.+.
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999997654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-29 Score=165.82 Aligned_cols=163 Identities=21% Similarity=0.413 Sum_probs=130.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccceE--EEEEE-----------CCEEEEEEEcCCCCCccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY-----------KNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~--~~~~~-----------~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
+.-||.+.+|++|+||||++.++..+.|... ..|.++++ .++-+ ..+.+++|||+|+++|++..-.
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 3456788999999999999999999988754 44555444 23222 2367899999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+=+++++||+++.+||-++..|+...-......++-+++++||+|+.+.....+ ......+.+.++||||+||
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~---~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE---DQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH---HHHHHHHHHhCCCeeeecc
Confidence 9999999999999999999999999999987777778899999999999976532221 1122233456678999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
-+|.|+++..+-+.+.++++
T Consensus 164 ~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHH
Confidence 99999999999998887654
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=165.18 Aligned_cols=160 Identities=23% Similarity=0.355 Sum_probs=126.3
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEE----ECCEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|||||||+++++.+.+. .+.+|.+..+.... .+.+.+++||++|++++...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 3466899999999999999999988877765 56777776665443 245899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+++|+|+++..+|..+..|+..+.... .++|+++++||+|+.+.....+.... .+..++.++++|+++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999998888776665332 47899999999998654322222111 12234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|.+|.+.+..
T Consensus 158 ~~f~~ia~~l~~ 169 (215)
T PTZ00132 158 KPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-28 Score=159.26 Aligned_cols=161 Identities=20% Similarity=0.330 Sum_probs=124.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-cCccc--ceEEEEE--ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~--~~~~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.-++||+++|..=+|||||+-+++.+.|... ..|.. +....++ .....+.||||+|+++|.++-+-|++.+|+++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 4589999999999999999999999988632 22222 2223333 34568999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|||+++.+||+.+..|..++... .+..+-+++|+||+|+..+.. +........++.-+..|+++||+++.|+.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~---Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQ---VTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhh---hhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 999999999999999988776443 336789999999999864321 1111112222333456899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+.+...+.+
T Consensus 167 Fe~Lt~~MiE 176 (218)
T KOG0088|consen 167 FESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=163.40 Aligned_cols=146 Identities=22% Similarity=0.310 Sum_probs=107.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE-------CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~-------~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
+||+++|++|+|||||++++.++.+. .+.||.+..+ ..+.+ ..+.+++||++|+++|...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999876 4566776433 22332 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC------------------CCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCcc
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSL 148 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~~~ 148 (181)
+|+|||++++.+|+++..|+..+.... ...++|+++|+||+|+.++...... ...-....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999998887775421 1246899999999999654211111 111111123
Q ss_pred CCcceEEEEcccCCC
Q 030193 149 RQRHWYIQSTCATSG 163 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~ 163 (181)
++.+.+.++.++++.
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 344556666776653
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=148.86 Aligned_cols=165 Identities=47% Similarity=0.799 Sum_probs=153.8
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECC-EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.++.++|+++|-.++|||||+..|.+..+....||.+++...+...+ ..+++||.+|+...+..|..|+.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 38899999999999999999999999999888999999999998876 89999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|.++...|+.+.+.+.+.+...+...+|+.+..||.|+..+...+++...+.+..++.+-|.+-+||+.+++|+.+-.+|
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999999999999999998888889999999999999999899999998999989999999999999999999999988
Q ss_pred HHHHhh
Q 030193 173 LSNNIA 178 (181)
Q Consensus 173 i~~~l~ 178 (181)
+.....
T Consensus 174 v~sn~~ 179 (185)
T KOG0074|consen 174 VQSNPE 179 (185)
T ss_pred hhcCCC
Confidence 876543
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=156.07 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-c--cCcccceEEEEEECCEEEEEEEcCCCCCccc---------ccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---------~~~~~~~~~ 85 (181)
.+|+++|++|+|||||+++|.+..+.. . ..|.+.....+..++..+++|||||+..... ........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 479999999999999999999987642 1 2355555556666779999999999743110 000111236
Q ss_pred cEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 86 QGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|+|++++.++ .....++... .... .+.|+++|+||+|+.......+... + .+...+++++|||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l-~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEI-KPLF-KNKPVIVVLNKIDLLTFEDLSEIEE-E----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHH-Hhhc-CcCCeEEEEEccccCchhhHHHHHH-h----hhhccCceEEEEeccc
Confidence 899999999876654 4444444433 3221 4799999999999976543333111 1 1223567999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-27 Score=161.36 Aligned_cols=163 Identities=17% Similarity=0.256 Sum_probs=128.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE---EEEE-ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~---~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+|+.++|+..+|||+++-.+..+.|+ .+.||.--++ ..++ .+.+++.+|||+|+++|...++..+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999988887 5677765333 2343 55689999999999999999988999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhh--------hCCCccCCcc-eEEEEcc
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDK--------LGLHSLRQRH-WYIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~S 159 (181)
+||++.++.+|+++...|...+.++. +++|+++|++|.|+.+.... +++.+. .+...++..+ ..|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999999988888887776 89999999999999853211 111111 0011111122 5799999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++..|++++|+.......
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999999888654
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=163.71 Aligned_cols=159 Identities=22% Similarity=0.292 Sum_probs=131.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE---EEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+..||.++|.+|+|||+|+.++....|. .+.||++-.+ ..++.+.+.+.|+||+|++.|..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4679999999999999999999999987 5678776433 23444567899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+++++.||+.+...+..+...+....+|+++|+||+|+.+. ...++-.. .+..++++++|+||+.+.+++++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~-----la~~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKA-----LARSWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHH-----HHHhcCCcEEEeeccCCcCHHHH
Confidence 999999999999999999866555567899999999999863 23333222 14455667999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|..+.+.+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-26 Score=156.42 Aligned_cols=156 Identities=26% Similarity=0.250 Sum_probs=108.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECCE-EEEEEEcCCCCC----cccccccc---cccccE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDK----IRPLWRHY---FQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~~~d~~g~~~----~~~~~~~~---~~~~d~ 87 (181)
+|+++|++|||||||++++.+.... .. ..|.......+...+. .+.+|||||... ++.....+ +..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999976642 11 2244444444555665 999999999632 22222333 346999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++ .+++....|...+.... ...+.|+++|+||+|+.+.....+....+.... .+.+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---WGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---CCCCEEEEecCCCCC
Confidence 9999999988 67777766655443321 124689999999999976554443333221110 245789999999999
Q ss_pred HHHHHHHHHHHh
Q 030193 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~~~~~i~~~l 177 (181)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-27 Score=155.65 Aligned_cols=179 Identities=38% Similarity=0.710 Sum_probs=154.8
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCC--------cccccCcccceEEEEEECCEEEEEEEcCCCC
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE--------IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 72 (181)
|=.++.-+++..+....+.|+|+|..++|||||+.+..... +..-.||.+.+...+......+.+||..|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 33456667777888899999999999999999999885433 1234678999999999999999999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CccCCc
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQR 151 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~ 151 (181)
..+++|..||..+|++||+||+++++.|+.....+..........++|+++.+||.|+.+..+.+++...+.. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999998888888877777789999999999999999888888887773 333445
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..++.++||.+|+|+++..+|+...+.+
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhh
Confidence 6789999999999999999999998765
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-28 Score=156.08 Aligned_cols=150 Identities=19% Similarity=0.403 Sum_probs=121.2
Q ss_pred EEEcCCCCChHHHHhhhhcCCccc--ccCcccceEE----EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 21 LMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 21 ~v~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+++|++++|||.|+-++..+.|.. -..|.++++. .++..++++++|||+|+++|++....|++.+|.+++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999999888777652 2456666553 3455678999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
.+..||++...|+.++-. .....+.+++++||+|+.++ .+.+.+...+ ++|++++|+++|.|++..
T Consensus 81 ankasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y--------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY--------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHHH--------CCCceeccccccccHhHH
Confidence 999999999998877543 33346889999999999653 2344444444 457889999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|-.|.+.+.+
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9999887764
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=156.28 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=107.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC-------cc-cccCc------ccce----EEEE-----EECCEEEEEEEcCCCCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE-------IV-TTIPT------IGFN----VETV-----EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~-------~~-~~~~t------~~~~----~~~~-----~~~~~~~~~~d~~g~~~~~ 75 (181)
+|+++|++++|||||+++|++.. +. ...++ .+.. ...+ +.+++.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998742 11 11111 1111 1122 3356889999999999999
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCCcc
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRH 152 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~ 152 (181)
..+..+++.+|++++|+|+++..+++....++ .... .++|+++|+||+|+.+... .+++.+.+... .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999998766555544333 2222 3689999999999864321 12333333221 1
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..++++||++|.|++++++++.+.+..
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 358999999999999999999987643
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=147.93 Aligned_cols=159 Identities=19% Similarity=0.322 Sum_probs=128.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE----EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+|..++|+-|+|||.|+..|....|. +..+|+++.+ ..+.+.+.++++||++|+++|+....+|++.+-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 45789999999999999999999999987 5556777654 335556789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|+..+..+.....|+.....- ..++.-+++++||.|+.+... .++. + .+++..+..+.++|+++|.|++
T Consensus 89 mvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeea-k----~faeengl~fle~saktg~nve 162 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEA-K----EFAEENGLMFLEASAKTGQNVE 162 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHH-H----HHHhhcCeEEEEecccccCcHH
Confidence 999999998888888888775443 337888999999999865432 2222 2 2234456689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+.|-...+++..
T Consensus 163 dafle~akkiyq 174 (215)
T KOG0097|consen 163 DAFLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999877776653
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=153.84 Aligned_cols=151 Identities=23% Similarity=0.158 Sum_probs=102.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC---cc-cc--cCcccceEEEEEEC-CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE---IV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~---~~-~~--~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.|+++|++|+|||||+++|.+.. +. .. ..|.+..+..+... +..+++|||||++++......+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999999743 22 11 22444444555555 78999999999998877777778899999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+.+... ....+.+. .+... ...|+++++||+|+..... .+++...+.... ..+++++++|++++.|++
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCCcCHH
Confidence 99976211 11111111 11111 1249999999999975421 122222222110 134689999999999999
Q ss_pred HHHHHHHH
Q 030193 168 EGLDWLSN 175 (181)
Q Consensus 168 ~~~~~i~~ 175 (181)
++++.+..
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=157.57 Aligned_cols=153 Identities=21% Similarity=0.234 Sum_probs=108.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCE-EEEEEEcCCCCC---------cccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDK---------IRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~---------~~~~~~~~ 81 (181)
...++|+++|++|||||||++++++..+. . ..+|.+.....+...+. .+.+|||||... +...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 34589999999999999999999998743 2 23455555555555554 899999999732 11111 12
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+..+|++++|+|++++.++..... +.+.+......++|+++|+||+|+....... ..+...+.+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDEELE--------ERLEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChHHHH--------HHhhcCCCceEEEEcC
Confidence 467999999999998877665443 3333433333568999999999987543222 1122234578999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030193 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l 177 (181)
++.|+++++++|.+.|
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=151.87 Aligned_cols=154 Identities=22% Similarity=0.221 Sum_probs=108.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc---cCcccceEEEEEEC---CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.|+++|++|+|||||+++|.+..+... ..|.......+... +..+++|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876542 23444444455543 689999999999999888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---hhCCCcc--CCcceEEEEcccCCCCCHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---KLGLHSL--RQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~S~~~~~~i~ 167 (181)
|+++....+. ...+ ..+.. .++|+++|+||+|+.... .+.+.. .+..... ....++++++|+++|.|++
T Consensus 82 d~~~~~~~~~-~~~~-~~~~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAI-KLAKA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHH-HHHHH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9986432111 1111 12222 468999999999987532 122211 1211111 1235689999999999999
Q ss_pred HHHHHHHHHhh
Q 030193 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~l~ 178 (181)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987543
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=156.11 Aligned_cols=159 Identities=23% Similarity=0.310 Sum_probs=105.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEECCEEEEEEEcCC-----------CCCccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~ 82 (181)
...++|+++|++|+|||||+++|.+..+.. ..|+.......+... .+++||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999887642 344443333344433 689999999 345555555554
Q ss_pred c----cccEEEEEEECCCcccH----H-----HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-
Q 030193 83 Q----NTQGLIFVVDSNDRDRV----V-----EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH- 146 (181)
Q Consensus 83 ~----~~d~~i~v~d~~~~~s~----~-----~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~- 146 (181)
. .++++++|+|......+ . .....+...+.. .++|+++|+||+|+.... ..+++...++..
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 46788999998643221 0 111222233332 478999999999986543 234445544432
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..+..+.+++++||++| |+++++++|.+.+..
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 11222336899999999 999999999998754
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=145.81 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=112.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+. ...++....... +...+ +.+.+||+||+..+...+..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999998854 334454444433 55666 8899999999999988888888899999999
Q ss_pred EECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 92 VDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+|+... .++......+...+......+.|+++++||+|+.......+....+.... ..+++++||+++.|+++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLN----GEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhcc----CCceEEeecCCCCCHHHHH
Confidence 998766 56655553333333322223789999999999976543333333332221 2358999999999999999
Q ss_pred HHHH
Q 030193 171 DWLS 174 (181)
Q Consensus 171 ~~i~ 174 (181)
++|.
T Consensus 157 ~~l~ 160 (161)
T TIGR00231 157 KIVE 160 (161)
T ss_pred HHhh
Confidence 9864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=150.45 Aligned_cols=156 Identities=24% Similarity=0.249 Sum_probs=114.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccccc-------------------CcccceEEEEEECCEEEEEEEcCCCCCcccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 79 (181)
+|+++|.+|+|||||+++|.+....... .+.......+......+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999887654321 122333445566788999999999999888888
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcc-------
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL------- 148 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~------- 148 (181)
.+++.+|++++|+|+.+..+.. ..+.+ ..... .+.|+++|+||+|+..+.... ++...+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~-~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHL-RIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHH-HHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 8899999999999998655432 22222 23332 479999999999998643322 23333332211
Q ss_pred --CCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 149 --RQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 149 --~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.....+++++|+++|.|++++++++.+.+..
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2346789999999999999999999988753
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=142.95 Aligned_cols=143 Identities=21% Similarity=0.202 Sum_probs=106.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------cccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~~~ 85 (181)
++|+++|++|+|||||++++.+.... ...+ +.......+...+.++++|||||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999988743 2223 333334456667889999999997655432 22355789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
|++++|+|+.++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++|++++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998766655443322 257999999999998764332 1223345799999999999
Q ss_pred HHHHHHHHHHHh
Q 030193 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~~~~~i~~~l 177 (181)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-24 Score=160.61 Aligned_cols=156 Identities=15% Similarity=0.225 Sum_probs=109.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccccc----CcccceEEEEEECCEEEEEEEcCCCCC-ccccc-------cccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDK-IRPLW-------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~-------~~~~ 82 (181)
.+..+|+++|.+|||||||+|+|++..+.... .|.+.....+..++.++.+|||||... +.... ..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 45669999999999999999999998865322 233444455677888999999999743 22211 1236
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++...+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999754 455555555555543 24677889999998654 333343333211 1124689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
|.|+++++++|.+.+..
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999987653
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=160.45 Aligned_cols=158 Identities=23% Similarity=0.221 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEE-CCEEEEEEEcCCCCC-------ccccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~~~d~~g~~~-------~~~~~~~~~~~~d 86 (181)
..|+++|.||||||||++++.+.... .. ..|.......+.+ ...++++||+||... ....+...++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 57999999999999999999986533 22 3355666666666 457899999999532 1122333456799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCccCCcceEEEEcccCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++++|+|+++.++++....|..++... ....++|+++|+||+|+.+.....+ ....+ ....+++++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 999999999877777776665544321 1124689999999999975433221 11111 11223578999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030193 165 GLYEGLDWLSNNIAT 179 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~ 179 (181)
|+++++++|.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988754
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=156.36 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=104.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--cccC-cccceEEE-EEECCEEEEEEEcCCCCCccc--------cccccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNVET-VEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~-t~~~~~~~-~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|+|++..+. +..| |+...... ....+.++.+|||||...... ....+++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998764 2222 33333222 334567899999999653211 1334568899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh-CCCccCCcceEEEEcccCCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL-GLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+ ....+ .+++++||++|.|
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~----~~v~~iSA~~g~g 151 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDF----KDIVPISALTGDN 151 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCC----CceEEEecCCCCC
Confidence 999999998766553 334444443 468999999999987433222222111 11111 1689999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++++++.+.+..
T Consensus 152 i~~L~~~l~~~l~~ 165 (270)
T TIGR00436 152 TSFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999987653
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=166.64 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=109.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCC----------Cccccc-cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLW-RH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~-~~ 80 (181)
..++|+++|.+|+|||||+|+|++.... +..+ |.+.....+...+..+.+|||||.. .|.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999998753 3333 3334445566778889999999952 222222 23
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+++..+++... ++..... .+.|+++|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568899999999999877766553 3333222 47899999999999754322222221111111112347889999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|++++|+.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=161.35 Aligned_cols=150 Identities=21% Similarity=0.224 Sum_probs=108.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEE-CCEEEEEEEcCCCC---------Cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQD---------KIRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~d~~g~~---------~~~~~~~~~~ 82 (181)
..++|+++|.+|+|||||+|+|++.... + ..+|.+.....+.. .+..+.+|||+|.. .|+..+. .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HH
Confidence 4589999999999999999999998743 2 24577777777777 46899999999962 2333222 35
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.++|++++|+|++++.++..... |...+......+.|+++|+||+|+.+....... .. ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~---~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPRIERL---EE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHhHHHH---Hh------CCCCEEEEEccC
Confidence 78999999999998876655433 334444333347899999999998753222111 11 112578999999
Q ss_pred CCCHHHHHHHHHHH
Q 030193 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~i~~~~~~i~~~ 176 (181)
|.|+++++++|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=144.42 Aligned_cols=150 Identities=27% Similarity=0.404 Sum_probs=113.2
Q ss_pred EEcCCCCChHHHHhhhhcCCc-cc-ccCcccceEEEEEEC----CEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 22 MVGLDAAGKTTILYKLKLGEI-VT-TIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
++|++|+|||||++++.+... .. ..++. ......... ...+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999887 33 33343 554444443 688999999999888887788889999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
++.++.....++..........++|+++++||+|+......+...... .......++++++|++++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE--QLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH--HHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 988888887774444444444689999999999987654433321000 11122356899999999999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-24 Score=149.71 Aligned_cols=156 Identities=21% Similarity=0.126 Sum_probs=103.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC----Ccc----c--ccCcccceEEEEEEC--------------CEEEEEEEcCCCCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG----EIV----T--TIPTIGFNVETVEYK--------------NISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~----~~~----~--~~~t~~~~~~~~~~~--------------~~~~~~~d~~g~~~ 73 (181)
++|+++|++|+|||||+++|++. .+. + ...|.+.....+.+. +..+++||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1 123444444444333 68999999999976
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC--c
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH--S 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~--~ 147 (181)
+........+.+|++++|+|+.+....+....+. .... .+.|+++|+||+|+...... +++...+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444456789999999998643333222221 1111 25799999999998754322 2222221111 0
Q ss_pred cCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
....+++++++|+++|.|++++++++.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1123568999999999999999999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-24 Score=157.32 Aligned_cols=123 Identities=21% Similarity=0.380 Sum_probs=101.1
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE---------------CCEEEEEEEcCCCC
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---------------KNISFTVWDVGGQD 72 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~---------------~~~~~~~~d~~g~~ 72 (181)
..+....+||+++|+.|||||||+++|.+..+. ...+|.+..+ ..+.+ ..+.++|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 345577899999999999999999999998876 4567777654 22332 24789999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCCC
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~D~~~~ 133 (181)
+|+.++..++++++++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+...
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999888777654321 135899999999999653
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-24 Score=145.33 Aligned_cols=134 Identities=21% Similarity=0.240 Sum_probs=92.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCC-----CcccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||+++|.+..+. ..+|.+. ++.. .+||+||+. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999988752 3334322 2222 789999972 2333333 4689999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
++++.++.. ..|.... ..|+++|+||+|+.+.. ..++......... ..+++++||++|.|+++++++
T Consensus 72 ~~~~~s~~~--~~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFP--PGFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETAG----AEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCC--hhHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcC----CCcEEEEecCCCCCHHHHHHH
Confidence 998887644 2333322 24999999999986532 2222222111111 126899999999999999998
Q ss_pred HH
Q 030193 173 LS 174 (181)
Q Consensus 173 i~ 174 (181)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=166.68 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=108.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC--------ccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~ 82 (181)
...++|+++|.+|||||||+|+|++.... ...| |.+.....+.+.+..+.+|||||.+. +...+..++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 34579999999999999999999987643 2233 33344455667788999999999763 333455677
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++|+|+|+++..++. ...+...+.. .++|+++|+||+|+..... +....... .+. ..+++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~--~~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~-g~~----~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATAT--DEAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL-GLG----EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc-CCC----CeEEEEcCC
Confidence 8999999999998765543 2334444443 4799999999999864321 11111111 111 236899999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
|.|++++++++.+.+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999987753
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=142.96 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=101.9
Q ss_pred EEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCccc--------ccccccccccEE
Q 030193 21 LMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (181)
Q Consensus 21 ~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~d~~ 88 (181)
+++|.+|+|||||++++.+... ....+ |.+.........+..+.+|||||+..+.. .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4789999999999999998763 22222 33444556667789999999999887554 334566889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
++|+|+.+..+... ..+...+.. .+.|+++|+||+|+.......+....+. . .+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~---~----~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLG---F----GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcC---C----CCeEEEecccCCCHHH
Confidence 99999976443322 233344443 3699999999999876433211111111 1 1478999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+++++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998754
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=142.67 Aligned_cols=146 Identities=22% Similarity=0.210 Sum_probs=102.6
Q ss_pred EEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc------cccccc--cccEEEE
Q 030193 22 MVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYFQ--NTQGLIF 90 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~~--~~d~~i~ 90 (181)
++|++|+|||||++++.+..+. ...+ |.+.....+...+..+.+|||||+..+... +..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5799999999999999987633 3333 444555667777789999999998776542 444554 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+|+.++.... .++.... . .++|+++|+||+|+.+..........+ .+..+++++++|++++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~-~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLL-E---LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHH-H---cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 99998754322 2232222 2 368999999999997643222111111 11123578999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988653
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=142.35 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCc------cccccccc--cccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~--~~~d 86 (181)
|+|+++|.||+|||||+|+|++.... .+.| |.+.....+...+..+.++|+||.... +.....++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 68999999999999999999999854 4444 666677788889999999999994222 12233333 5799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
++++|+|+++.+ .......+... .++|+++++||+|..... ..+.+.+.++ +|++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEEEeCC
Confidence 999999997643 33333333333 479999999999986543 3445555554 4799999999
Q ss_pred CCCHHHHHHHH
Q 030193 163 GEGLYEGLDWL 173 (181)
Q Consensus 163 ~~~i~~~~~~i 173 (181)
+.|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=146.96 Aligned_cols=145 Identities=22% Similarity=0.234 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc--CCccccc-----------------CcccceEEEEEECCEEEEEEEcCCCCCccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL--GEIVTTI-----------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~--~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 78 (181)
.+|+++|++++|||||+++|++ ..+.... .+.......+..++..+++||+||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999987 3333211 12223334567788999999999999999999
Q ss_pred ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC-CC-ccCCcce
Q 030193 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG-LH-SLRQRHW 153 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~-~~-~~~~~~~ 153 (181)
..+++.+|++++|+|+.+.. +.....++... .. .++|+++|+||+|+..... .+++...+. .. ...+.++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~-~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKA-LE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999997632 22222333322 22 3689999999999965322 122222221 11 1123467
Q ss_pred EEEEcccCCCCCHH
Q 030193 154 YIQSTCATSGEGLY 167 (181)
Q Consensus 154 ~~~~~S~~~~~~i~ 167 (181)
+++++|+++|.|+.
T Consensus 158 ~iv~~Sa~~g~~~~ 171 (194)
T cd01891 158 PVLYASAKNGWASL 171 (194)
T ss_pred CEEEeehhcccccc
Confidence 89999999997763
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=160.52 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=109.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 82 (181)
+..++|+++|++|+|||||+|+|++... .+..| |.+.....+...+..+++|||||...+... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5789999999999999999999998753 33344 334445567778899999999998655432 23567
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.++... |+... .. .++|+++|+||+|+... ..+++.+ ..+.+++++|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~-~~---~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDL-NK---SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHH-hh---CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec
Confidence 899999999999988776554 44433 22 46899999999998654 2222211 1234678999998
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
.|++++++.+.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6999999998887654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=162.57 Aligned_cols=146 Identities=21% Similarity=0.291 Sum_probs=110.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 82 (181)
+..++|+++|.+|+|||||+|+|++... .+..+ |.+.....+...+..+.+|||||...+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4678999999999999999999998764 33333 455556667778899999999998654432 22356
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.++... ..|.. ..+.|+++|+||+|+.+..... .....+++++|+++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~-~~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDD-EILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHH-HHHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 889999999999988776543 33333 2478999999999997542221 11234688999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=146.76 Aligned_cols=152 Identities=22% Similarity=0.198 Sum_probs=104.4
Q ss_pred EEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEEC-CEEEEEEEcCCCCC----cccc---cccccccccEEEE
Q 030193 22 MVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF 90 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~-~~~~~~~d~~g~~~----~~~~---~~~~~~~~d~~i~ 90 (181)
++|++|||||||++++.+.... .. ..|.+.....+... +..+.+||+||... .+.. +..+++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999998642 11 22444444556667 88999999999632 2222 2334678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEc
Q 030193 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+|+.++ .++.....+......... ..+.|+++|+||+|+.......+... .........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELV---RELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHH---HHHhcCCCCCEEEE
Confidence 9999877 456555555544433221 14689999999999976544333311 01112234568999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030193 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~ 176 (181)
|++++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=150.13 Aligned_cols=162 Identities=29% Similarity=0.388 Sum_probs=120.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEE--C--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||+++|.++.+.. ..+|....+..... . ...+.+||++|+++++..+..|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999884 44555544433222 1 46799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhh----------CCCccC-CcceEEEEcc
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKL----------GLHSLR-QRHWYIQSTC 159 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~----------~~~~~~-~~~~~~~~~S 159 (181)
+|.....++....+.|...+........|+++|+||+|+....... .+...+ ...... .....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 9999866666666666655555443579999999999997653211 111110 000000 1123378999
Q ss_pred cC--CCCCHHHHHHHHHHHhh
Q 030193 160 AT--SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~--~~~~i~~~~~~i~~~l~ 178 (181)
++ .+.++.+++..+...+.
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHH
Confidence 99 99999999999988775
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-23 Score=156.10 Aligned_cols=156 Identities=24% Similarity=0.240 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-EEEEEEEcCCCCCc----ccc---ccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPL---WRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~----~~~---~~~~~~~~d 86 (181)
..|+++|.+|||||||++++.+.... .. ..|.......+...+ .++++||+||.... ... +...+..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 58999999999999999999987632 11 235555555666666 89999999996422 122 223345799
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 87 GLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
++++|+|+++. .+++....+..++... ....+.|+++|+||+|+.+....+++.+.+.. ..+++++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999875 4555655444333221 12246899999999999765444444333321 1235789999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-23 Score=146.57 Aligned_cols=157 Identities=26% Similarity=0.381 Sum_probs=114.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccc-cEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~-d~~i~v~d 93 (181)
+|+++|++|||||||+++|.+..+....+++..+...+.. .+..+++||+||+.+++..+..+++.+ +++|||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876555544444433333 367899999999999999888889998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhh-----------CC--------------
Q 030193 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKL-----------GL-------------- 145 (181)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~-----------~~-------------- 145 (181)
+.+. .++.....++..++... ...++|+++++||+|+......+.++..+ ..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9887 67777777776654422 12579999999999987543222111111 00
Q ss_pred ------C--ccC--CcceEEEEcccCCCC-CHHHHHHHHHH
Q 030193 146 ------H--SLR--QRHWYIQSTCATSGE-GLYEGLDWLSN 175 (181)
Q Consensus 146 ------~--~~~--~~~~~~~~~S~~~~~-~i~~~~~~i~~ 175 (181)
. .+. ...+.++++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 011 235779999998876 69999998865
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=138.56 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=104.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCccc-----------ccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY 81 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~~ 81 (181)
.++|+++|++|+|||||++++++.... ...+ +.......+...+..+.+||+||..+... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999987632 2222 22333344566778899999999754311 01234
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+..+|++++|+|+.++.+.... . +...... .+.|+++++||+|+.+. ...+++........-.....+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-R-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-H-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 5689999999999887665432 2 2222222 36899999999999765 23333333332111111235799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 030193 160 ATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~ 176 (181)
++++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-23 Score=160.43 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=109.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCccccc-----------cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW-----------RH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-----------~~ 80 (181)
..++|+++|.+|+|||||+|+|++.... ...+ |.+.....+...+..+.+|||||..++.... ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987632 2222 3333345566677899999999976544321 23
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+++.+|++++|+|+++..+.+.. .+...... .+.|+++|+||+|+. +....+++...+......-..++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL--RIAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH--HHHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 56889999999999876554332 23333332 468999999999997 3222334433332211111346899999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++|.|++++++++.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=148.54 Aligned_cols=158 Identities=25% Similarity=0.217 Sum_probs=112.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--------------c-------ccCcccceEEEEE--ECCEEEEEEEcCCCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVE--YKNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~-------~~~t~~~~~~~~~--~~~~~~~~~d~~g~~ 72 (181)
+.++|+++|+.++|||||+++|+...-. . ..-|.......+. .....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4679999999999999999999753311 0 1225566667777 788999999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhh-CCCcc
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL-GLHSL 148 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~-~~~~~ 148 (181)
.|.......+..+|++|+|+|+.+.-. ....+.+.. +.. .++|+++|+||+|+.... ..+++...+ .....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~-~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKI-LRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHH-HHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ceeecccceecccccceeeeecccccc-ccccccccc-ccc---cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 999888888899999999999975432 222233333 332 478899999999998321 112222122 11112
Q ss_pred CC-cceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 149 RQ-RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~-~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.. ..++++++|+.+|.|++++++.+.+.+.
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22 3589999999999999999999998875
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-23 Score=145.26 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=102.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc---c---cCcccceEEEEEEC---------------------------C----
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT---T---IPTIGFNVETVEYK---------------------------N---- 60 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~---~~t~~~~~~~~~~~---------------------------~---- 60 (181)
++|+++|+.|+|||||+.++.+..... . ..+....+..+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 589999999999999999997652110 0 11111111111110 2
Q ss_pred --EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030193 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (181)
Q Consensus 61 --~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~- 137 (181)
..+.+||+||++++...+...+..+|++++|+|+.++.........+... ... ...|+++|+||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999998888888888999999999998632111112222222 111 135799999999997533222
Q ss_pred ---HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 138 ---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++...+. ......++++++||++|+|++++++.+.+.+..
T Consensus 158 ~~~~i~~~~~--~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVK--GTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHh--ccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222111 111234678999999999999999999987754
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=154.67 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=105.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCE-EEEEEEcCCCCCc--ccccc------cccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPLWR------HYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~--~~~~~------~~~~~~ 85 (181)
++|+++|.+|+|||||+|+|++.... . ...|.+.....+...+. .+.+|||+|..+. ...+. ..++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987643 2 23466666666766654 8899999997332 11122 235789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceE-EEEcccCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGE 164 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 164 (181)
|++++|+|++++..+..... +..++......++|+++|+||+|+.+... ..+... . .+.+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 99999999998876655532 22233322224789999999999864321 111111 0 1112 4789999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
|++++++++.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998875
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-23 Score=142.40 Aligned_cols=130 Identities=21% Similarity=0.354 Sum_probs=101.4
Q ss_pred cccCcccceEEE--EE--ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC
Q 030193 44 TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
Q Consensus 44 ~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (181)
.+.||.+..+.. +. .+.+.+.||||+|++++...+..+++++|++|+|||++++++|+....|+..+.... ..++
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 456788766643 33 345889999999999999999999999999999999999999999988887776543 2578
Q ss_pred eEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 120 VLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 120 piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|+++|+||+|+.+.. ..++.... .+..++.+++|||++|.|++++|++|.+.+.+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999996432 22222111 12234578999999999999999999988754
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=136.63 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=104.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc--c-Cc-ccceEEEEEECCEEEEEEEcCCCCCccc--------cccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT--I-PT-IGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~-~t-~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~ 84 (181)
..+|+++|++|+|||||++++.+...... . .+ .......+...+..+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999998875321 1 12 2222233455668999999999754432 22344678
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+|++++|+|+.++ +.....++.+.+.. .+.|+++|+||+|+.. .....+....+... ....+++++|++++
T Consensus 83 ~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 9999999999876 22333444444443 3689999999999873 33333333333221 11347899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++++.|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998753
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=156.91 Aligned_cols=158 Identities=27% Similarity=0.293 Sum_probs=109.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCCCCC----ccc---cccccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDK----IRP---LWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----~~~---~~~~~~~~~d 86 (181)
..+|+++|.||||||||+|+|++.... . ...|.......++..+.++++||+||... ... ..-..+..++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 458999999999999999999987643 2 23466667777888889999999999522 111 1223457799
Q ss_pred EEEEEEECCCc----ccHHHHH---HHHHHHhcCC-------CCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCccCCc
Q 030193 87 GLIFVVDSNDR----DRVVEAR---DELHRMLNED-------ELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSLRQR 151 (181)
Q Consensus 87 ~~i~v~d~~~~----~s~~~~~---~~~~~~~~~~-------~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~ 151 (181)
++++|+|+++. +.++... ..+..+.... ...+.|+++|+||+|+.+.....+. ...+ ...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EAR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHc
Confidence 99999999752 2333332 2333332100 2246899999999999754333222 2222 223
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++++++||+++.|+++++++|.+.+..
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999987653
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=157.27 Aligned_cols=148 Identities=22% Similarity=0.285 Sum_probs=107.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCC--------Cccccccccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|+|++.... ...+ |.+.....+.+.+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987642 2333 4555666777888999999999963 33444566778999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++|+|+.+.. ......+.+++++ .++|+++|+||+|+.+..........++.. +++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~--~~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~-------~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGL--TPEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFG-------EPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCC--CHHHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCC-------CeEEEeCCcCCCh
Confidence 999999997532 3333444555544 468999999999987543221111112211 5789999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
+++++++.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-24 Score=143.44 Aligned_cols=154 Identities=18% Similarity=0.347 Sum_probs=130.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE----EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.-||++|+|..++||||+|.+++.+-|. ++..|++..+ ..+.+++++..+||++|+++|......|++++...+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 56789999999999999999999988887 5566777654 235667889999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+||.-++..||+...+|..+...+. .++|.++|.||+|+.+.. +.+-+.+.+..+ ++-+|++...
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R--------lyRtSvked~ 167 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR--------LYRTSVKEDF 167 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh--------hhhhhhhhhh
Confidence 9999999999999999998887654 479999999999998642 334444555444 4569999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
|+..+|.+|.+++.
T Consensus 168 NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLT 181 (246)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=156.64 Aligned_cols=147 Identities=23% Similarity=0.306 Sum_probs=104.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC--------cccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~~~ 85 (181)
++|+++|.+|+|||||+|+|.+.... ...+ |.+.....+.+.+..+.+|||||.+. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987742 2233 44556666778889999999999876 233345567889
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
|++++|+|+.+..+ ....++..++.+ .+.|+++|+||+|+.+.. +........ .+. .++++||++|.|
T Consensus 82 d~il~vvd~~~~~~--~~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~l-g~~----~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLT--PADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSL-GLG----EPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCC--HHHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhc-CCC----CCEEEEeeCCCC
Confidence 99999999976432 222333344443 368999999999975421 111111111 111 367899999999
Q ss_pred HHHHHHHHHHH
Q 030193 166 LYEGLDWLSNN 176 (181)
Q Consensus 166 i~~~~~~i~~~ 176 (181)
++++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=142.51 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=104.8
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCCc-ccccCcccce--EEEEEECCEEEEEEEcCCCC----------Ccc
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKNISFTVWDVGGQD----------KIR 75 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~~~d~~g~~----------~~~ 75 (181)
++..+.+..++|+++|++|+|||||++++++..+ ....++.+.. ...+. .+..+.+|||||.. .+.
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 3444557889999999999999999999999763 2333333221 11122 24789999999953 222
Q ss_pred ccccccccc---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcc
Q 030193 76 PLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 76 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
.....++.. .+++++|+|...+.... ..++...+.. .+.|+++++||+|+.+....+....... ..+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~ 168 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKEL--DLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGD 168 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHH--HHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcC
Confidence 333334443 46888899987653322 2223333332 4689999999999875433222221111 1111114
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+++++|++++.|++++++.|.+.+..
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 578899999999999999999887754
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=157.98 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=110.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-c--CcccceEEEEEECCE-EEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++++|||||+++|.+..+... . .|.......+...+. .+++||||||+.|...+...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4678999999999999999999998776532 2 244444555666544 89999999999999999988899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc--C--CcceEEEEcccCCCCCH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL--R--QRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~~~i 166 (181)
|+|+++... ....+.+.. ... .++|+++++||+|+... ..+++...+....+ . ...++++++||++|.|+
T Consensus 165 VVda~dgv~-~qT~e~i~~-~~~---~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVM-PQTIEAISH-AKA---ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCC-HhHHHHHHH-HHH---cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999975321 122222222 221 47899999999998643 23333332211111 0 12357999999999999
Q ss_pred HHHHHHHHH
Q 030193 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~i~~ 175 (181)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=158.48 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=109.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------ccc-ccC------cccce----EEEEEE-----CCEEEEEEEcCCCCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT-TIP------TIGFN----VETVEY-----KNISFTVWDVGGQDK 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~-------~~~-~~~------t~~~~----~~~~~~-----~~~~~~~~d~~g~~~ 73 (181)
..|++++|+.++|||||+++|+... +.. ... +.+.. ...+.+ ..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111 111 11222 223333 238899999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQ 150 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 150 (181)
|...+..+++.+|++++|+|+++..+.+....|+.. .. .++|+++|+||+|+..... .+++...++..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~-~~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---- 153 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA-LE----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---- 153 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH-HH----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence 999999999999999999999876665555444432 22 3689999999999864321 12333333321
Q ss_pred cceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 151 RHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 151 ~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
...++++||++|.|+++++++|.+.+..
T Consensus 154 -~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 -ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred -cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1247899999999999999999987754
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=137.12 Aligned_cols=141 Identities=22% Similarity=0.227 Sum_probs=93.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccc----cccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL----WRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----~~~~~~~~d~~i~v~d~ 94 (181)
+|+++|.+|+|||||+|++.+..... .++.+. .+... .+||+||....... ....++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-RKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-ccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 79999999999999999988754211 122221 22111 37999997322221 22336889999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
++..++.. .++... . .+.|+++++||+|+.+. ..+.+........ ...|++++|+++|.|++++++++.
T Consensus 75 ~~~~s~~~--~~~~~~-~----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRLP--AGLLDI-G----VSKRQIAVISKTDMPDA-DVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccccC--HHHHhc-c----CCCCeEEEEEccccCcc-cHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHHH
Confidence 87765422 233332 1 36799999999998653 3333333221111 124899999999999999999998
Q ss_pred HHhh
Q 030193 175 NNIA 178 (181)
Q Consensus 175 ~~l~ 178 (181)
+.+.
T Consensus 144 ~~~~ 147 (158)
T PRK15467 144 SLTK 147 (158)
T ss_pred Hhch
Confidence 8764
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=153.33 Aligned_cols=148 Identities=22% Similarity=0.275 Sum_probs=115.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--ccc--CcccceEEEEEECCEEEEEEEcCCCCCc---------cccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~~~ 84 (181)
..|+++|.||+|||||.|+|++.... +.. -|.+..+...++.+..|.++||+|-+.. +......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999998854 333 3788888889999999999999995422 2334556678
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|++|||+|. .++.+..++.+.++++. .++|+++|+||+|.... ++...++....+. .++++||.+|.
T Consensus 84 ADvilfvVD~--~~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~---e~~~~efyslG~g----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDG--REGITPADEEIAKILRR---SKKPVILVVNKIDNLKA---EELAYEFYSLGFG----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeC--CCCCCHHHHHHHHHHHh---cCCCEEEEEEcccCchh---hhhHHHHHhcCCC----CceEeehhhcc
Confidence 9999999999 55567777888888774 46999999999997633 3333333333332 46789999999
Q ss_pred CHHHHHHHHHHHh
Q 030193 165 GLYEGLDWLSNNI 177 (181)
Q Consensus 165 ~i~~~~~~i~~~l 177 (181)
|+.+|++.+.+.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=133.21 Aligned_cols=151 Identities=25% Similarity=0.235 Sum_probs=105.2
Q ss_pred EEcCCCCChHHHHhhhhcCCcccc--cC--cccceEEEEEEC-CEEEEEEEcCCCCCcccc-------cccccccccEEE
Q 030193 22 MVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYK-NISFTVWDVGGQDKIRPL-------WRHYFQNTQGLI 89 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~~~~--~~--t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~-------~~~~~~~~d~~i 89 (181)
++|++|+|||||++++.+...... .+ +........... ...+.+||+||...+... ...+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998765421 11 323333333433 679999999997765433 334678899999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+|+.+........ ++..... .+.|+++|+||+|+.......................+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999876655543 2222222 57999999999999876544443221122222334678999999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=132.21 Aligned_cols=110 Identities=22% Similarity=0.406 Sum_probs=80.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc---ccC--cccc--eEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT---TIP--TIGF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~---~~~--t~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
||+|+|++|||||||+++|.+..+.. ..+ .... ....+......+++||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 111 2222 2222333344699999999999988887778999999999
Q ss_pred EECCCcccHHHHHHH--HHHHhcCCCCCCCeEEEEEeCCC
Q 030193 92 VDSNDRDRVVEARDE--LHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~piivv~nK~D 129 (181)
||++++.+++.+.++ |...+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999887554 22323221 14699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=150.42 Aligned_cols=153 Identities=25% Similarity=0.283 Sum_probs=105.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEEC-CEEEEEEEcCCCCC----cccccc---cccccccE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPLWR---HYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~----~~~~~~---~~~~~~d~ 87 (181)
.|+++|.||||||||++++++..+. . ...|...+...+... +.++++||+||... ...+.. ..+..+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987642 1 233555555566666 68999999999632 112222 23456999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 88 LIFVVDSNDR---DRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+++|+|+++. +.++....+...+.. .....++|+++|+||+|+.... ..+++.+.+. ++++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999754 455555443333222 1112478999999999984321 1122222222 4689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
+.|++++++++.+.+.+
T Consensus 312 geGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 312 GQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=159.90 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=112.7
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccc-c--CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+...|+++|+.++|||||+++|.+..+... . .|.......+.+.+..++|||||||+.|...+..+++.+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35788999999999999999999988776532 1 23444445677778999999999999999999988899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-c-cC--CcceEEEEcccCCCCCH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-S-LR--QRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~S~~~~~~i 166 (181)
|+|+++... ....+.|.. ... .++|+++++||+|+... ..+++...+... . .. ...++++++||++|.|+
T Consensus 367 VVdAddGv~-~qT~e~i~~-a~~---~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVM-PQTIEAINH-AKA---AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCC-HhHHHHHHH-HHh---cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999976321 112222222 222 47999999999999653 223332222111 1 11 12478999999999999
Q ss_pred HHHHHHHHH
Q 030193 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~i~~ 175 (181)
++++++|..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999875
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=146.02 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=105.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc--ccC-cccceEEE-EEECCEEEEEEEcCCCCCcc--------cccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP-TIGFNVET-VEYKNISFTVWDVGGQDKIR--------PLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~-t~~~~~~~-~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~ 83 (181)
+.-.|+++|++|||||||+|+|++..... ..+ |+...... ...++.++.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 34568999999999999999999987642 222 33332222 23355899999999964432 12233567
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+.. .....+....+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999862 33344445555443 4689999999999973 23333332222211 0124689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
+.|++++++++.+.+.
T Consensus 156 ~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 156 GDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999998764
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=142.66 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=112.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC-cccceEE-EEEECCEEEEEEEcCCCCC--------cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNVE-TVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~-t~~~~~~-~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 83 (181)
+.--|+++|.||+|||||+|++.+.... +..| |+.-.+. .+..++.++.++||||--. +.......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3456899999999999999999999975 3333 4444443 3455789999999999322 2223445568
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCC-CccCCcceEEEEcccC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGL-HSLRQRHWYIQSTCAT 161 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~S~~ 161 (181)
.+|+++||+|+.+. +...+++..+.++. .+.|+++++||+|..+... ...+...+.. ..+. .++++||+
T Consensus 85 dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~----~ivpiSA~ 155 (298)
T COG1159 85 DVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFK----EIVPISAL 155 (298)
T ss_pred cCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcc----eEEEeecc
Confidence 89999999999753 34455666666654 4689999999999887655 3333332221 1121 68999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|++.+.+.+..++.+
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999998764
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=152.68 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=108.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc-----------ccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~~ 80 (181)
..++|+++|.+|+|||||+|++++.... +..+ |.+.....+...+..+.+|||||..+.... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 5799999999999999999999987632 3333 222223445567888999999996432211 123
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+.+..+.+.. .+.....+ .+.|+++|+||+|+.+....+++...+..........+++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 56789999999999876554432 23333332 46899999999999854333444333322211223468999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887543
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=160.33 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=110.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCC----------cccc-ccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~-~~~ 80 (181)
..++|+++|.+|+|||||+|+|++... .+..+ |.+.....+...+..+.+|||||..+ |... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 458999999999999999999999874 23333 33444455667788899999999532 1111 123
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+++..+.+... .+..... .++|+++|+||+|+.+....+.+..............+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 467899999999998876665543 3333322 47899999999999764333333332221111112346788999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-22 Score=139.09 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=95.4
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCc-ccccCcccc--eEEEEEECCEEEEEEEcCCCCC----------ccc
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYKNISFTVWDVGGQDK----------IRP 76 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~--~~~~~~~~~~~~~~~d~~g~~~----------~~~ 76 (181)
...++++.++|+++|++|+|||||+|++++..+ ....++.+. ....+... ..+.+||+||... +..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 345668899999999999999999999998863 222232221 11222222 3799999999532 222
Q ss_pred ccccccc---cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccC
Q 030193 77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLR 149 (181)
Q Consensus 77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~ 149 (181)
....+++ .++++++|+|+.++-+.... .+.+.+.. .+.|+++++||+|+.+..+ .++++..+...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 2233444 36899999999764333222 33344433 4689999999999875432 23333333321
Q ss_pred CcceEEEEcccCCCCCHH
Q 030193 150 QRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~i~ 167 (181)
..+++++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 224579999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=160.54 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=106.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC--------cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 83 (181)
...+|+++|.+|+|||||+|+|++.... ...| |.+.......+.+..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 4578999999999999999999987643 2233 33333444566788999999999753 2333455678
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
.+|++++|+|+.+. +......+.+.+.. .++|+++|+||+|+..... .......+ .+. ..+++||++|
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~l-g~~----~~~~iSA~~g 421 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKL-GLG----EPYPISAMHG 421 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHc-CCC----CeEEEECCCC
Confidence 99999999999652 34444455555554 5799999999999864321 11111111 111 2468999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|++++++++.+.+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999987753
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=158.57 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=109.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc---c-cc--cCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEI---V-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~---~-~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.|+++|++++|||||+++|++... . +. ..|.+..+..+..++..+.+||+||+++|...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 4789999999999999999997442 2 11 2245555566777789999999999999998888888999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhH----HHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
+|+++... ....+.+ ..+.. .++| +++|+||+|+.+....+. +........+ ..+++++++|+++|.|+
T Consensus 81 VDa~~G~~-~qT~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 81 VDADEGVM-TQTGEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCc
Confidence 99986321 1111222 12222 3566 999999999986542222 2221111111 12468999999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
+++++.+.+.+.
T Consensus 155 ~eL~~~L~~l~~ 166 (581)
T TIGR00475 155 GELKKELKNLLE 166 (581)
T ss_pred hhHHHHHHHHHH
Confidence 999999877654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=156.62 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=110.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-c--CcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~--~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+.++|+++|++++|||||+++|.+..+... . .|.....+.+.+ .+..+++|||||++.|...+..+++.+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 5778999999999999999999998776532 1 233333333332 35899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-c-C--CcceEEEEcccCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-L-R--QRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~S~~~~ 163 (181)
+++|+|+.+....+. .+.+.. +.. .++|+++++||+|+... ..+++...+.... + . ...++++++||++|
T Consensus 322 aILVVDA~dGv~~QT-~E~I~~-~k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQT-IEAINY-IQA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhh-HHHHHH-HHh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999976322211 122222 222 47899999999998753 2333333221110 0 1 12478999999999
Q ss_pred CCHHHHHHHHHHH
Q 030193 164 EGLYEGLDWLSNN 176 (181)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (181)
.|++++++++...
T Consensus 396 ~GIdeLle~I~~l 408 (742)
T CHL00189 396 TNIDKLLETILLL 408 (742)
T ss_pred CCHHHHHHhhhhh
Confidence 9999999998764
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-21 Score=128.50 Aligned_cols=157 Identities=25% Similarity=0.336 Sum_probs=126.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc---------c-c---CcccceEEEEEECC-EEEEEEEcCCCCCccccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------T-I---PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------~-~---~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~ 78 (181)
......||+|+|+.++||||++..+....... . . .|...++......+ ..+++++||||++|...|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 34678899999999999999999999877421 1 1 23445555555555 899999999999999999
Q ss_pred ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEc
Q 030193 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+.+++.++++++|.+.+..+ ....+.+++...+ .+|+++++||.|+.+....++++..+.... ...++++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999988877 3334445555422 399999999999999999999988887663 34589999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030193 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~ 176 (181)
++.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999988765
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=152.21 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=109.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c---------cccc-------CcccceEEEEEE-----CCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I---------VTTI-------PTIGFNVETVEY-----KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~---------~~~~-------~t~~~~~~~~~~-----~~~~~~~~d~~g~ 71 (181)
++..+++++|+.++|||||+.+|+... + .+.. -|.......+.+ +++.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456699999999999999999997631 1 1111 122222333433 3689999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~ 148 (181)
.+|...+..+++.+|++|+|+|+++....+....+ ..... .++|+++|+||+|+..... .+++...++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~-~~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-- 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-- 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence 99999999999999999999999875544433332 22222 3689999999999864322 12333332221
Q ss_pred CCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
...++++||++|.|+++++++|.+.+..
T Consensus 158 ---~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ---ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ---cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1247899999999999999999987754
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=150.41 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=103.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc---------------------------c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---------------------------T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------------~-------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|+...-. + ..-|.+.....++.++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45789999999999999999999743200 0 1125556666777888
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----- 135 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----- 135 (181)
+.+.+|||||+++|.......+..+|++++|+|+.+..++.....+........ ...|+++++||+|+.+...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999999887766666788999999999986322222222222333221 1357999999999975221
Q ss_pred -HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 136 -AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
.+++...+....+....++++++||++|.|++++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 1223332222223333568999999999999873
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=145.96 Aligned_cols=159 Identities=23% Similarity=0.187 Sum_probs=105.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECC-EEEEEEEcCCCCCcc-------cccccccccccE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-ISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~~~d~~g~~~~~-------~~~~~~~~~~d~ 87 (181)
.|+++|.||||||||+|+|++.... +..| |.......+...+ ..+.++|+||...-. ...-..+..+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999987643 2222 4455555666665 469999999964211 112234678999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+++|+|++ +.+.+.....+...+... ....+.|+++|+||+|+.......+....+... . ....+++++||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEEECCCC
Confidence 99999987 344455444444333221 112368999999999987554333322222111 0 11125789999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|++++++.|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988753
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=143.48 Aligned_cols=151 Identities=20% Similarity=0.278 Sum_probs=112.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 82 (181)
++.++++++|.||+|||||+|.|++.+-. +..| |.+.-...++..++.+++.||+|-...... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 68999999999999999999999998843 5444 777888889999999999999995432222 22334
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|.++||+|++.+.+ ..+..+...+. .+.|+++|.||.|+..+.....+ + .. .+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~--~~d~~~~~~~~----~~~~~i~v~NK~DL~~~~~~~~~-~-~~------~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLD--KEDLALIELLP----KKKPIIVVLNKADLVSKIELESE-K-LA------NGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCc--hhhHHHHHhcc----cCCCEEEEEechhcccccccchh-h-cc------CCCceEEEEecC
Confidence 78999999999987522 22222222222 47899999999999876554433 1 11 122578999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
++|++.+.+.|.+.+..
T Consensus 361 ~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 361 GEGLDALREAIKQLFGK 377 (454)
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 99999999999887643
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=134.34 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=110.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc--------------cccc-------CcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI--------------VTTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~-------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++...- .+.. .+.......+.+++.++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975321 0100 1233445667788999999999999999988
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC----------
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG---------- 144 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~---------- 144 (181)
+..+++.+|++++|+|+.+.... ....+|.. +.. .++|+++++||+|+.... ..++++..+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~-~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRL-LRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHH-HHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999865432 33344433 332 378999999999987421 1111111111
Q ss_pred ----------------------------------------------CCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 145 ----------------------------------------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 145 ----------------------------------------------~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.......-+|++-.||.++.|++.+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0011233478999999999999999999999875
Q ss_pred h
Q 030193 179 T 179 (181)
Q Consensus 179 ~ 179 (181)
+
T Consensus 236 ~ 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
Confidence 4
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-20 Score=132.79 Aligned_cols=149 Identities=21% Similarity=0.180 Sum_probs=101.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECCEEEEEEEcCCCCCcc-------cccccccccccEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d~~ 88 (181)
+|+++|++|+|||||+++|.+.... .. ..|.+.....+.+.+..+++||+||..... .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987642 22 234445555677789999999999974332 1233567899999
Q ss_pred EEEEECCCccc-HHHHHHHHH----------------------------------------HHhcCC-------------
Q 030193 89 IFVVDSNDRDR-VVEARDELH----------------------------------------RMLNED------------- 114 (181)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (181)
++|+|++++.. ...+.+.+. .++.++
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999986542 222222221 111110
Q ss_pred ---------C--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 115 ---------E--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 115 ---------~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
. ..-+|+++|+||+|+.+..+.+. +.. ..+++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 01258999999999875432221 111 12478899999999999999998875
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=149.85 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=114.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC--Ccccc-----------------cCcccceEEEEEECCEEEEEEEcCCCCCccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 78 (181)
.+|+++|+.++|||||+++|+.. .+... ..|.......+.+.++.+++||||||.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999853 22110 113334456688899999999999999999999
Q ss_pred ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc--CCcce
Q 030193 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQRHW 153 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~ 153 (181)
..+++.+|++++|+|+.+. .......+|..... .++|+++|+||+|+.+... .+++...+..... .+..+
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 9999999999999999753 23444555555443 4789999999999865321 2223332221111 22357
Q ss_pred EEEEcccCCCC----------CHHHHHHHHHHHhhh
Q 030193 154 YIQSTCATSGE----------GLYEGLDWLSNNIAT 179 (181)
Q Consensus 154 ~~~~~S~~~~~----------~i~~~~~~i~~~l~~ 179 (181)
+++.+|+++|. |++.+++.+.+.+..
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 89999999996 799999999988764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=148.38 Aligned_cols=152 Identities=18% Similarity=0.113 Sum_probs=102.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cc-------------------------c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV-------------------------T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|+.++|||||+.+|+... .. + ...|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 557899999999999999999997521 10 0 0124445556677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H-
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A- 136 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~- 136 (181)
..+++||+|||++|.......+..+|++++|+|+++.+++... ..+........ ...|+++++||+|+.+... .
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence 9999999999999887777777899999999999876422111 11111122211 2368999999999974221 1
Q ss_pred ---hHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 137 ---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+++...+....+....++++++||++|.|+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 22222222222233457899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=141.01 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=115.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCC----------CCcccc-ccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DKIRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~-~~~ 80 (181)
..++|+++|.||+|||||+|++++.+-. +..+ |.+.-...++..+.++.++||+|- +.|... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4699999999999999999999998854 3333 666666778888999999999993 223222 224
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
.+..+|++++|+|+..+ +...+..+..++.+ .+.++++|+||.|+.+. ...++....+....-.-...+++.+
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 45679999999999654 45556666666655 57999999999999875 3444444433322111123478899
Q ss_pred ccCCCCCHHHHHHHHHHHh
Q 030193 159 CATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l 177 (181)
||+++.+++++++.+.+..
T Consensus 332 SA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 9999999999999988754
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=150.00 Aligned_cols=153 Identities=22% Similarity=0.212 Sum_probs=103.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccccc-----CcccceEEEEEE----------------CCEEEEEEEcCCCCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY----------------KNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~~ 74 (181)
+..-|+++|++++|||||+++|.+..+.... ++.+......+. +...+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4567999999999999999999988765322 222222221111 1124889999999999
Q ss_pred ccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHh
Q 030193 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAA 137 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~ 137 (181)
...+..+++.+|++++|+|+++ +++++... .+.. .++|+++++||+|+.+.. ..+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 9999999999999999999986 33333322 2222 368999999999986421 001
Q ss_pred HHHh-----------hhCCCcc----------CCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 138 EITD-----------KLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 138 ~~~~-----------~~~~~~~----------~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
.+.. .+....+ ....++++++||++|+|++++++++...
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 1110 1111111 1125789999999999999999988653
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=146.72 Aligned_cols=159 Identities=19% Similarity=0.126 Sum_probs=104.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC------cccceEEEE--------------------EE------CCEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP------TIGFNVETV--------------------EY------KNIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------t~~~~~~~~--------------------~~------~~~~ 62 (181)
+..++|+++|++++|||||+++|.+.......+ |.+..+..+ +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999997643221111 111111110 01 1468
Q ss_pred EEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hH
Q 030193 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AE 138 (181)
Q Consensus 63 ~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~ 138 (181)
+++||+|||++|...+......+|++++|+|+.+........+.+. .+... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888888888999999999985321112222222 22211 13579999999999764322 22
Q ss_pred HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+...+. .....+++++++|+++|.|+++++++|...+.
T Consensus 159 i~~~l~--~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVK--GTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhh--hcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 222111 11123578999999999999999999988654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-20 Score=148.61 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=114.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Ccccc-------------cC----cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVTT-------------IP----TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-------------~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.+..+|+++|+.++|||||+++|+.. .+... .. |.......+.++++.+++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 35679999999999999999999862 22211 11 2223334567788999999999999999
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC-Ccc-CC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL-HSL-RQ 150 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~-~~~-~~ 150 (181)
..+..+++.+|++++|+|+.+... .....+|..... .++|.++++||+|...... .+++...+.. ... .+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999975322 233344443333 4688999999999865432 2334333321 111 23
Q ss_pred cceEEEEcccCCCC----------CHHHHHHHHHHHhhh
Q 030193 151 RHWYIQSTCATSGE----------GLYEGLDWLSNNIAT 179 (181)
Q Consensus 151 ~~~~~~~~S~~~~~----------~i~~~~~~i~~~l~~ 179 (181)
..+|++.+|+++|. |+..+++.|.+.+..
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 46889999999998 589999999987764
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-20 Score=130.57 Aligned_cols=145 Identities=18% Similarity=0.116 Sum_probs=97.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc------------ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
.++|+++|+.++|||||+++|++... .+. .-|.+.....++.++..+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 000 11333334455667789999999999888877
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCccCCc
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLRQR 151 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (181)
....+..+|++++|+|+... ...........+.. .++| +++++||+|+....+. + ++...+....+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG--PMPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 77778899999999999753 22222223333333 3565 7899999998643221 1 23333322223334
Q ss_pred ceEEEEcccCCCCCH
Q 030193 152 HWYIQSTCATSGEGL 166 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i 166 (181)
+++++++|+.+|.|.
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 688999999999885
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-20 Score=149.74 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=99.0
Q ss_pred cCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc------ccccc--ccccEEEEEE
Q 030193 24 GLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (181)
Q Consensus 24 G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~d~~i~v~ 92 (181)
|.+|+|||||+|++.+.... .+.| |.+.....++.++.++++||+||+..+... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999988753 4444 333444566778889999999998776543 23333 3689999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+++.+. ...+..+... .++|+++|+||+|+.+.... +++.+.+ +++++++||++|.|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9986432 2222333222 47999999999998653322 2222222 35799999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+++++.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=150.41 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=105.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc----------ccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~~ 82 (181)
+.++|+++|.+|+|||||+|++++.... .+.| |.+.....+...+.+++++|+||+..+... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3578999999999999999999987643 2233 444455567778899999999998766432 11232
Q ss_pred --ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCccCCcceEEE
Q 030193 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 156 (181)
..+|++++|+|+++.++. ..++... .+ .++|+++++||+|+.+.... +++.+.+ +++++
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql-~e---~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L--------G~pVv 146 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQL-LE---LGIPCIVALNMLDIAEKQNIRIDIDALSARL--------GCPVI 146 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHH-HH---cCCCEEEEEEchhhhhccCcHHHHHHHHHHh--------CCCEE
Confidence 478999999999875432 2233333 32 47999999999998654332 2222222 35789
Q ss_pred EcccCCCCCHHHHHHHHHHHh
Q 030193 157 STCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l 177 (181)
++|+++++|++++.+.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999988754
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=131.95 Aligned_cols=146 Identities=18% Similarity=0.119 Sum_probs=93.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c---------------------------------ccCcccceEEEEEECCEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-T---------------------------------TIPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~---------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++|+|||||+++|+...-. . ..-|.+.....+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999753210 0 01133444455667788999
Q ss_pred EEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 030193 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK 142 (181)
Q Consensus 65 ~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~ 142 (181)
+|||||+++|...+...++.+|++++|+|+.+... ........++... ...++++|+||+|+.+... ..++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666667789999999999976421 1111122222221 1246888999999875321 1112111
Q ss_pred hC--CCccCCcceEEEEcccCCCCCHHH
Q 030193 143 LG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 143 ~~--~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+. ...+.-..++++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 11 011111134689999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=134.92 Aligned_cols=146 Identities=20% Similarity=0.192 Sum_probs=97.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC---------------------------cccc-------cCcccceEEEEEECCEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE---------------------------IVTT-------IPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~---------------------------~~~~-------~~t~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++++|||||+.+|+... +.+. .-|.+.....+...+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999995321 0011 1144445566778899999
Q ss_pred EEEcCCCCCcccccccccccccEEEEEEECCCcc------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----C
Q 030193 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M 134 (181)
Q Consensus 65 ~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~ 134 (181)
+||+||+..|...+...++.+|++++|+|+++.. ........+. ..... ...|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 9999999888777777778899999999998631 1111222222 22221 23689999999999732 1
Q ss_pred CHhHHHh----hhCCCccCCcceEEEEcccCCCCCHH
Q 030193 135 NAAEITD----KLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 ~~~~~~~----~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
..+++.. .+........+++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1222222 22222223346889999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=125.04 Aligned_cols=161 Identities=16% Similarity=0.261 Sum_probs=112.3
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCC-cc--cccC--cccceEEEEEECCEEEEEEEcCCC----------CC
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE-IV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DK 73 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~----------~~ 73 (181)
+...|.+...-|+++|.+|+|||||||+++++. .. +..| |...+++.++.+ +.+.|+||. +.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence 345566788999999999999999999999966 33 3333 444555555433 899999994 23
Q ss_pred ccccccccccc---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC
Q 030193 74 IRPLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH 146 (181)
Q Consensus 74 ~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~ 146 (181)
+......|++. ..++++++|+- +.....+..+.+++.. .++|+++++||+|.....+. ..++..+...
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r--~~~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDAR--HPPKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECC--CCCcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 33444555543 56788899984 4455666666666665 57999999999999876444 3344444333
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.... .+ ++..|+.++.|++++...|.+.+..
T Consensus 168 ~~~~-~~-~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDD-QW-VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCcc-ce-EEEEecccccCHHHHHHHHHHHhhc
Confidence 2211 11 6678999999999999999887653
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-20 Score=122.67 Aligned_cols=136 Identities=23% Similarity=0.261 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCC----CCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~----~~~~~~~~~~~~~~d~~i~v~d 93 (181)
-||+++|+.|+|||||+++|.+.+. .+..|..+.+ . =.++||||. ..+.........++|.+++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~-----~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEY-----Y---DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEe-----c---ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 4799999999999999999999775 3333433322 1 134899994 2344444444568999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
++++.+. ....+... .+.|+|-|+||+|+. +....+...+.+.....+ .+|++|+.+|+|+++|.++
T Consensus 73 at~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 73 ATEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 9876432 11122222 358999999999998 444555555555555444 3689999999999999998
Q ss_pred HH
Q 030193 173 LS 174 (181)
Q Consensus 173 i~ 174 (181)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=141.73 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=102.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc------cCcccceEEEEEE--------------C------------CEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVETVEY--------------K------------NIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~t~~~~~~~~~~--------------~------------~~~ 62 (181)
...++|+++|+.++|||||+.+|.+...... .-|....+....+ . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 4578999999999999999999976422111 1122221111000 0 268
Q ss_pred EEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----H
Q 030193 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----E 138 (181)
Q Consensus 63 ~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~ 138 (181)
+++||+||+++|..........+|++++|+|+.++..-......+.. +... ...|+++|+||+|+.+..... +
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA-LDII--GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence 99999999998877666666678999999999854211111222221 2211 124789999999997643322 2
Q ss_pred HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+...+.. ....+++++++||++|.|++++++.|.+.+.
T Consensus 164 i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 164 IKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 2221111 1123568999999999999999999988654
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=147.43 Aligned_cols=153 Identities=20% Similarity=0.119 Sum_probs=103.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc---c---ccCcccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV---T---TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~---~---~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
-|+++|+.++|||||+++|.+.... . ...|.+..+..+.. .+..+++||+|||++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 5889999999999999999974422 1 13355554444443 356789999999999987777778999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHHH----hhhCCCccCCcceEEEEcccCCCCCH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEIT----DKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
+|+.+... ....+. ..++.. .++| +++|+||+|+.++...++.. ..+....+ ...+++++|+++|.|+
T Consensus 82 Vda~eg~~-~qT~eh-l~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~--~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 82 VACDDGVM-AQTREH-LAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGF--AEAKLFVTAATEGRGI 154 (614)
T ss_pred EECCCCCc-HHHHHH-HHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEeCCCCCCC
Confidence 99975211 111222 223322 2344 68999999997643333222 22211111 2357999999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
+++++.|.+...
T Consensus 155 ~~L~~~L~~~~~ 166 (614)
T PRK10512 155 DALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHhhc
Confidence 999999987543
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=143.82 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=102.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC-----cccceEEEEEE------CC-----E-----EEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY------KN-----I-----SFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----t~~~~~~~~~~------~~-----~-----~~~~~d~~g~~~ 73 (181)
.+...|+++|++++|||||++++.+.......+ +.+........ .. . .+++|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 567789999999999999999998766443222 23322221111 00 1 278999999999
Q ss_pred cccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------------~ 136 (181)
|...+...+..+|++++|+|+++ ++++.... .+.. .++|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99998888899999999999986 44443332 2222 4789999999999852100 0
Q ss_pred h-----------HHHhhhCCCccC----------CcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 137 A-----------EITDKLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 137 ~-----------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
. ++...+....+. ...++++++|+++|+|++++++.+..
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 011111111111 13578999999999999999988864
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=129.16 Aligned_cols=152 Identities=24% Similarity=0.249 Sum_probs=100.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccccc-----------------Cc-------ccce-----------------EEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-----------------PT-------IGFN-----------------VETVE 57 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~t-------~~~~-----------------~~~~~ 57 (181)
||+++|+.++|||||+++|..+.+.... .| .++. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999865442100 00 0011 01233
Q ss_pred ECCEEEEEEEcCCCCCcccccccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..+..++++|+||+++|.......+. .+|++++|+|+.... ......+..++.. .++|+++|+||+|+.++..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999988766554443 689999999986532 3333334444443 4689999999999876433
Q ss_pred Hh----HHHhhhCCCcc---------------------CCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 136 AA----EITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 ~~----~~~~~~~~~~~---------------------~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.. ++...+..... .....|+|.+|+.+|+|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 22 23333332111 122458999999999999999987754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-20 Score=122.61 Aligned_cols=163 Identities=33% Similarity=0.581 Sum_probs=135.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+.=|++++|--|+|||||++.|..+......||.......+.+.+.+++-+|.+||..-+..|..|+..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 34668999999999999999999999988778877777777888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------ccCCcceEEEEcccCC
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATS 162 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~S~~~ 162 (181)
.+.+.|......+...+......++|+++.+||+|.+.....++.+..+++. ....+...+|-||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 9999999999888887776656789999999999998876655555544311 1222446678899998
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
+.+.-+.|.|+.+.+
T Consensus 178 ~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQYI 192 (193)
T ss_pred cCccceeeeehhhhc
Confidence 888888888877654
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=119.67 Aligned_cols=161 Identities=16% Similarity=0.256 Sum_probs=123.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--E--EEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
-.+||.++|++..|||||+-.+.++++. +...+.++++. . +...+..+.+||.+|++++....+....++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 4679999999999999999999999986 44557776653 2 33445789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+||+++++.+..+.+|+.+..+... ...-++|+||-|..-.. +.++--.......++-.+.+.|.||+.+..|+..
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNK--TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCC--ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 9999999999999999887665432 33447889999974322 2222222222233334566788999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+|..+..++-
T Consensus 177 IFK~vlAklF 186 (205)
T KOG1673|consen 177 IFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHh
Confidence 9998877654
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=128.06 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=80.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc--c----------------cc-------cCcccceEEEEEECCEEEEEEEcCCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI--V----------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~--~----------------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
..+|+++|++|+|||||+++++...- . +. ..+.......++++++++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 35799999999999999999974210 0 00 01222334567888999999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+|......+++.+|++++|+|+.+... .....+| +.... .++|+++++||+|+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~-~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLF-EVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHH-HHHHh---cCCCEEEEEECCccCC
Confidence 9988777777899999999999976432 2222333 33332 4789999999999753
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-19 Score=120.46 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=94.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccc--eEEEEEECCEEEEEEEcCCCCC----------cccccccccc--
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~-- 83 (181)
.|+++|++|+|||||++.+.+..+. ...++.+. ....+... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999965443 22333222 22223323 3899999999543 2333333333
Q ss_pred -cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcccC
Q 030193 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCAT 161 (181)
Q Consensus 84 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~ 161 (181)
+.+++++++|....... ....+.+.+.. .+.|+++++||+|+.................. .....+++++|++
T Consensus 80 ~~~~~~~~v~d~~~~~~~--~~~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTE--IDLEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCH--hHHHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 46789999999754321 11122233332 35899999999998654332222222110000 1223468899999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030193 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l 177 (181)
++.|+++++++|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=127.09 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=80.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--c------------ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE--I------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~--~------------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++... . .+. .-|.......+.+++.++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996411 0 001 11444455677888999999999999988888
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+++.+|++++|+|+.+... ......|.. ... .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~-~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQ-ADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHH-HHH---cCCCEEEEEECCCCCC
Confidence 8889999999999999975422 122233333 332 4689999999999863
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=135.22 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=105.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------cc-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|+.++|||||+++|++... .+ ..-|.+.....+..++..+.++|+|||++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 5678999999999999999999986311 00 0113333334455567889999999999888
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA-----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~-----~~~~~~~~~~~~ 149 (181)
.........+|++++|+|+.+... ....+.+. .+.. .++| +++++||+|+.+..+.. ++...+....+.
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~-~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHIL-LARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHH-HHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 777777788999999999975321 12223332 2322 3567 68899999987533221 222222222222
Q ss_pred CcceEEEEcccCCCC--------CHHHHHHHHHHHhh
Q 030193 150 QRHWYIQSTCATSGE--------GLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~--------~i~~~~~~i~~~l~ 178 (181)
...++++++|+++|. ++.++++.+.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 334689999999983 57888888877653
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=125.58 Aligned_cols=161 Identities=20% Similarity=0.176 Sum_probs=114.4
Q ss_pred HHhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCCC------CCcccc
Q 030193 9 FSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQ------DKIRPL 77 (181)
Q Consensus 9 ~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~------~~~~~~ 77 (181)
+.++|. .+.+.|+|.|.||||||||++++++..+. . ...|.++.+..++.+..++|++||||- ++..-.
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence 444444 37889999999999999999999998864 2 344888999999999999999999993 111111
Q ss_pred c---ccccccccEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcc
Q 030193 78 W---RHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 78 ~---~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
. .+.-.-.++++|+||++..+.+ +.....|.++... .+.|+++|+||+|..+....+++..........
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~--- 311 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE--- 311 (346)
T ss_pred HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccc---
Confidence 1 1112347899999999977655 4444555555444 358999999999999877777666554333221
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHH
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
....+++..+.+++.+-+.+...
T Consensus 312 -~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 312 -EPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred -cccceeeeehhhHHHHHHHHHHH
Confidence 13357788888888777776654
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=123.32 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=99.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc------------cC----------cccceEEEEE-----ECCEEEEEEEcCCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTT------------IP----------TIGFNVETVE-----YKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~------------~~----------t~~~~~~~~~-----~~~~~~~~~d~~g~ 71 (181)
+|+++|+.|+|||||+++|+....... .. +.......+. ...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986442211 00 1111112222 23478999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-------CCHh---HHHh
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-------MNAA---EITD 141 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-------~~~~---~~~~ 141 (181)
.+|......++..+|++++|+|+.+..++.. ..++..... .+.|+++|+||+|+... ...+ ++.+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888899999999999987655432 233332222 35899999999998621 1111 1111
Q ss_pred ----hhCCCcc------CCcceEEEEcccCCCCCHH--------HHHHHHHHHhhh
Q 030193 142 ----KLGLHSL------RQRHWYIQSTCATSGEGLY--------EGLDWLSNNIAT 179 (181)
Q Consensus 142 ----~~~~~~~------~~~~~~~~~~S~~~~~~i~--------~~~~~i~~~l~~ 179 (181)
......+ -+.+..++++|++.++++. ++++.|.+.+.+
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCC
Confidence 1111111 1122347789999998887 777777766543
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.1e-18 Score=134.10 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=82.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c----------------ccccC-------cccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I----------------VTTIP-------TIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~----------------~~~~~-------t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..+|+++|++++|||||+++|+... . .+..+ +.......+.++++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 567899999999999999999996311 0 00011 1223345577889999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
|+.+|......+++.+|++++|+|+.+... ......|. .... .++|+++++||+|...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLME-VCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECCcccc
Confidence 999998877778899999999999976432 22333443 3332 4799999999999864
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=117.26 Aligned_cols=156 Identities=22% Similarity=0.344 Sum_probs=130.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE---C-CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY---K-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~---~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++++++|+.|.||++++++++.++|. .+.+|.+........ . ..++..|||+|++.+-....-|+-+....+++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 789999999999999999999999998 578899887755432 3 38999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
||+...-.+.+...|..+..+.. .++||++++||.|..+.. .........+..++.+++.|++++.|++.=|-
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccchH
Confidence 99998888899988888877643 369999999999975432 12223444456678899999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
|+.+++..
T Consensus 163 ~LarKl~G 170 (216)
T KOG0096|consen 163 WLARKLTG 170 (216)
T ss_pred HHhhhhcC
Confidence 99987653
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=134.00 Aligned_cols=158 Identities=20% Similarity=0.162 Sum_probs=103.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC-------Cc-----ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EI-----VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~-------~~-----~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|++++|||||+++|++. .+ .+. .-|.+.....+..++..+.++||||+.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 45789999999999999999999862 11 000 113333334455567789999999999887
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNA-A----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+... ....+.+.. +.. .++|.+ +++||+|+.+..+. + ++...+..-.+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~-~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHH-HHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777788999999999975321 222233332 222 357755 68999999753221 1 222222111112
Q ss_pred CcceEEEEcccCCCC----------CHHHHHHHHHHHh
Q 030193 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~----------~i~~~~~~i~~~l 177 (181)
..+++++++|+.+|. ++.++++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 235789999999984 6788888887654
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.5e-18 Score=124.63 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=80.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--------------c-------ccCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++...-. + ...+.......+.+.++.+++|||||+.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999753210 0 011333444567778899999999999888888
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+++.+|++++|+|+.+..... ....|.. +.. .++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~-~~~---~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVG-TEKLWEF-ADE---AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHH-HHH---cCCCEEEEEECCccCC
Confidence 888889999999999998654332 2233332 222 4689999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=110.03 Aligned_cols=161 Identities=22% Similarity=0.316 Sum_probs=116.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccceE-EEEEE---CCEEEEEEEcCCCCCc-cccccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNV-ETVEY---KNISFTVWDVGGQDKI-RPLWRHYFQNTQ 86 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~-~~~~~---~~~~~~~~d~~g~~~~-~~~~~~~~~~~d 86 (181)
-+..||+++|.-++|||+++..++..+.. ...||++-.+ ..++- ....++++||.|-..+ ..+-.+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 35679999999999999999999876643 2345554222 23322 2357999999997777 455568889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++||+..+++||+.+...-..+-+......+||++++||+|..++.+... ......++...+..+++++.++..+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~---d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM---DVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH---HHHHHHHhhhheeEEEEEeccchhh
Confidence 9999999999999988875444443344446799999999999875433221 1111222233456889999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
-+-|-.+...+.
T Consensus 164 ~epf~~l~~rl~ 175 (198)
T KOG3883|consen 164 YEPFTYLASRLH 175 (198)
T ss_pred hhHHHHHHHhcc
Confidence 999998887664
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-19 Score=137.99 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=122.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE---EEEEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+.++|+++|+.|+||||||-+++..++++..|..-..+ ..+.-..+..++.|++..+.-+.....-++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 3678999999999999999999999999987666332111 1122244568999999777666665666799999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCH--hH-HHhhhC-CCccCCcceEEEEcccCCCC
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNA--AE-ITDKLG-LHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~--~~-~~~~~~-~~~~~~~~~~~~~~S~~~~~ 164 (181)
|++.+++.++..+...|...+++..+ .++|+|+|+||+|..+.... +. ....+. ...++ .+++|||++-.
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE----tciecSA~~~~ 161 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE----TCIECSALTLA 161 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH----HHHhhhhhhhh
Confidence 99999999999999999999887553 47999999999999875443 22 111111 11112 58899999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
++.++|....+++.
T Consensus 162 n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 162 NVSELFYYAQKAVI 175 (625)
T ss_pred hhHhhhhhhhheee
Confidence 99999988777654
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=121.84 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=97.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccc-----eEEEEEEC-CEEEEEEEcCCCCCcccccc-----ccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-----NVETVEYK-NISFTVWDVGGQDKIRPLWR-----HYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~-----~~~~~~~~-~~~~~~~d~~g~~~~~~~~~-----~~~~~ 84 (181)
+++|+++|++|+|||||+|++++..... ..++.+. ....+... ...+.+||+||......... ..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865432 2222221 11112111 24789999999754322222 22567
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhC---CCccC---
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLG---LHSLR--- 149 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~---~~~~~--- 149 (181)
+|+++++.+. ++...+..+.+.+.. .+.|+++|+||+|+..... .+++...+. ...+.
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998887432 356666666666665 3689999999999843211 112111111 11111
Q ss_pred CcceEEEEcccC--CCCCHHHHHHHHHHHhhh
Q 030193 150 QRHWYIQSTCAT--SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 150 ~~~~~~~~~S~~--~~~~i~~~~~~i~~~l~~ 179 (181)
....++|.+|+. .+.++..+.+.+...|.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 112368889998 679999999999988764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=134.45 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=111.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCC------ccccccccc--cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK------IRPLWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~------~~~~~~~~~--~~ 84 (181)
+..+|+++|.||+|||||.|++++.... .+-| |.+.....+..++.++++.|+||.-. -+.....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 3567999999999999999999987743 5555 67777788888999999999999422 122233333 35
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.|+++-|+|+++.++-- ....+.+. .+.|++++.|++|...+ ...+++.+.++. |++++||
T Consensus 82 ~D~ivnVvDAtnLeRnL---yltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNL---YLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHH---HHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence 79999999998754322 22223333 47899999999998654 345566666654 6999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
++|.|++++.+.+.+...++
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998765544
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=137.62 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=88.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-------------c-cc-------ccCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------------I-VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------------~-~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++..+|+++|+.|+|||||+++|+... + .+ ...|.......+.+.+..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 567899999999999999999997521 0 00 12245555667888899999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|...+..+++.+|++++|+|+.+....+.. ..|... .. .++|+++|+||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~-~~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQA-DR---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHH-Hh---cCCCEEEEEECCCCCCC
Confidence 998899999999999999999876554432 334332 22 47899999999998753
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=116.83 Aligned_cols=162 Identities=25% Similarity=0.398 Sum_probs=121.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccc---cccEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~---~~d~~i~v 91 (181)
...-.|+++|+.+||||+|.-.|..+.+....+++..+...+.......+++|.|||++.+.....++. .+-+++||
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 445689999999999999999999998777777777888888888888999999999998877666666 78999999
Q ss_pred EECCC-cccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC------------------------
Q 030193 92 VDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG------------------------ 144 (181)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~------------------------ 144 (181)
+|... +.....+.+.+..++... ....+|+++..||.|+..+...+.+++.+.
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~ 195 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD 195 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 99864 233445555565555543 346789999999999976543333322111
Q ss_pred -----------CCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 145 -----------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 145 -----------~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
...+..+.+.+.++|++++ +++++-+|+.+++
T Consensus 196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 1122235678999999998 8999999998764
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-20 Score=124.10 Aligned_cols=161 Identities=17% Similarity=0.248 Sum_probs=126.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE----EEEEC-CEEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~----~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
..-++++|+|+-|+||||++.+++.+.+.. +..|++..+. +.+.+ -+++++||.+|+++|-.+...|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 456799999999999999999999998873 5667765542 22222 26889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCC---CCeEEEEEeCCCCCCCC---CHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|||+++...|+....|..+......++ -+|+++..||||..+.. ....+........+. ..+++|++.
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~----gwtets~Ke 178 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE----GWTETSAKE 178 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc----ceeeecccc
Confidence 99999999999999999988876654443 47899999999975432 123333333333332 478999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
+.|++|+.+.+++++..
T Consensus 179 nkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKILV 195 (229)
T ss_pred ccChhHHHHHHHHHHHh
Confidence 99999999999987653
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=132.18 Aligned_cols=145 Identities=19% Similarity=0.142 Sum_probs=94.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------ccc-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|+.++|||||+++|++.. ..+ ..-|.+.....++.++..+.+||||||++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 567899999999999999999997431 001 1124444444555567889999999999988
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
.........+|++++|+|+.+... ....+.+.. +.. .++| +++++||+|+.+..+. + ++...+....+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPM-PQTREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 776666678999999999975321 122223332 222 2556 4578999998754321 1 222222222222
Q ss_pred CcceEEEEcccCCCC
Q 030193 150 QRHWYIQSTCATSGE 164 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~ 164 (181)
...++++++|+.++.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 234789999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=133.23 Aligned_cols=146 Identities=19% Similarity=0.161 Sum_probs=97.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc------------c-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|++++|||||+++|++..-. + ..-|.+.....+..++.++.++|+|||.+|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 55789999999999999999999864210 0 0113333334455677889999999999887
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+..... ....+.+ ..+.. .++| +++++||+|+.+..+. + ++...+....+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~-~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHI-LLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHH-HHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777789999999999974321 2222333 33332 3567 7899999999763321 1 223322222222
Q ss_pred CcceEEEEcccCCCCC
Q 030193 150 QRHWYIQSTCATSGEG 165 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~ 165 (181)
...++++++|+.+|.|
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 2347899999999874
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=129.18 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=112.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCc-c----------cc-------cCcccceEEEEEECC---EEEEEEEcCCC
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI-V----------TT-------IPTIGFNVETVEYKN---ISFTVWDVGGQ 71 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~----------~~-------~~t~~~~~~~~~~~~---~~~~~~d~~g~ 71 (181)
|.++-.|+.|+.+..+|||||..+|+...- . +. .-|.....+.+-+++ +.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 336677999999999999999999975321 0 00 002222334444444 99999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCc
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (181)
.+|.....+.+..|+++|+|+|++.--.-+.....+..+- .+..+|.|+||+|++.+. .+++...... .|...
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-pe~V~~q~~~-lF~~~ 208 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-PERVENQLFE-LFDIP 208 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC-HHHHHHHHHH-HhcCC
Confidence 9999999999999999999999985332233333444432 478999999999998653 3333332221 11122
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
.-+++.+||++|.|+++++++|++.+...
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 22678899999999999999999987643
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=128.83 Aligned_cols=155 Identities=22% Similarity=0.218 Sum_probs=113.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC---cccceEEEEEEC---CEEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.+.+=|.++|+..+|||||+..+.+.......+ |-.+.-+.+... .-.+.++|||||+.|..++.+..+-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 356778999999999999999998877654322 444444555543 36899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC----CcceEEEEcccCCCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~ 164 (181)
++|+++++- +......-.+..+. .++|+++.+||+|..+. ....+...+....+. .....++++||++|+
T Consensus 83 ILVVa~dDG--v~pQTiEAI~hak~---a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDG--VMPQTIEAINHAKA---AGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCC--cchhHHHHHHHHHH---CCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999752 22222222223333 58999999999999843 444444444433332 235789999999999
Q ss_pred CHHHHHHHHHH
Q 030193 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~i~~~~~~i~~ 175 (181)
|+++|++.+.-
T Consensus 157 Gi~eLL~~ill 167 (509)
T COG0532 157 GIDELLELILL 167 (509)
T ss_pred CHHHHHHHHHH
Confidence 99999998764
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-18 Score=122.70 Aligned_cols=154 Identities=29% Similarity=0.385 Sum_probs=105.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCcccceEEEEEECCE-EEEEEEcCCCCCc----ccc---ccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI----RPL---WRHYFQN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~----~~~---~~~~~~~ 84 (181)
....|+++|-||+|||||++++.+...- . ...|.......+.+++. .+++-|.||--.- +-+ .-..+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 3457899999999999999999887632 1 12233333334555554 4999999993211 111 2233467
Q ss_pred ccEEEEEEECCCc---ccHHHHHHHHHHH-hcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEc
Q 030193 85 TQGLIFVVDSNDR---DRVVEARDELHRM-LNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 85 ~d~~i~v~d~~~~---~s~~~~~~~~~~~-~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+.++||+|++.+ ..++.....+.+. ..+..+.+.|.++|+||+|+.+.+.. +++.+.+... .++++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pv 347 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPV 347 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEe
Confidence 9999999999987 6666665544433 23444567899999999998643322 4455544332 58999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030193 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~ 176 (181)
||++++|+.++++.+.+.
T Consensus 348 sA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeccccchHHHHHHHhhc
Confidence 999999999999988764
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=133.97 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=84.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c------c------cc-------cCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I------V------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~------~------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++..+|+|+|++++|||||+++|+... . . +. .-|.......+.+++..+++|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 566799999999999999999996421 0 0 00 1134455567788999999999999998
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+...+..+++.+|++++|+|+.+....+ ....|. .+.. .++|+++++||+|+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~-~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQ-SETVWR-QANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChh-HHHHHH-HHHH---cCCCEEEEEECCCCCC
Confidence 8888888899999999999997643332 223333 2332 4689999999999875
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=129.95 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=104.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc------------c-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|+.++|||||+++|++.... + ..-|.+.....+..++..+.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 56789999999999999999999863110 0 0113334444455567889999999998887
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+... ....+.+ ..+.. .++|.+ +++||+|+.+... .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~-~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHI-LLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHH-HHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777789999999999975321 2222333 33332 357865 6899999975322 11 233333222222
Q ss_pred CcceEEEEcccCCCC----------CHHHHHHHHHHHh
Q 030193 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~----------~i~~~~~~i~~~l 177 (181)
..+++++++|+.++. ++..+++.|...+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 345789999999875 4677777777644
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=131.26 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=102.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc---------------------------ccc-------cCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI---------------------------VTT-------IPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------------------~~~-------~~t~~~~~~~~~~~~ 60 (181)
...++|+++|+.++|||||+.+|+...- .+. .-|.+.....++.++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4468999999999999999999863110 010 114444455566778
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHH-------HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~ 132 (181)
..++++|+|||++|.......+..+|++|+|+|+.+ ..|+ ...+.+.. ... .++ ++++++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~-~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALL-AFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHH-HHH---cCCCcEEEEEEcccCCc
Confidence 999999999999999999888999999999999975 2232 33333332 222 356 5789999999762
Q ss_pred C----CC----HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 133 A----MN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ~----~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
. .. .+++...+....+....++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 11 233333333333334457899999999999853
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=132.03 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=98.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCc--cc---------------------------c-------cCcccceEEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VT---------------------------T-------IPTIGFNVETVE 57 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~-------~~t~~~~~~~~~ 57 (181)
.+..++|+++|++++|||||+++|+...- .. . .-|.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999974321 00 0 013334445566
Q ss_pred ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030193 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN- 135 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~- 135 (181)
.++..+.++|||||++|.......+..+|++++|+|+.....- +.....+...+. ..|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEeeccccchhH
Confidence 6788999999999998876666667899999999999643111 111111222221 257899999999974321
Q ss_pred -HhHHHhhhCC--CccC-CcceEEEEcccCCCCCHHHH
Q 030193 136 -AAEITDKLGL--HSLR-QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 -~~~~~~~~~~--~~~~-~~~~~~~~~S~~~~~~i~~~ 169 (181)
.+++...+.. .... ....+++++|+++|.|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2233322210 0111 12468999999999998764
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=128.75 Aligned_cols=112 Identities=22% Similarity=0.274 Sum_probs=81.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Ccc----------------cccC-------cccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV----------------TTIP-------TIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~----------------~~~~-------t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..+|+++|++++|||||+++++.. ... +..+ +.......+++.++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 56889999999999999999998531 110 0000 1222335577889999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|+.+|......+++.+|++++|+|+.+. ++...+.+.+.... .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 9998888777788999999999999753 22222223333333 478999999999985
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-18 Score=117.58 Aligned_cols=125 Identities=29% Similarity=0.477 Sum_probs=78.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE---CCEEEEEEEcCCCCCccccccc---ccccccEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRH---YFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~~~~~---~~~~~d~~i 89 (181)
++..|+++|++|+|||+|..+|..+........+..+. .+.. .+..+.++|+|||++.+..... +..++.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 35679999999999999999999997654444443333 2222 3467999999999998875544 377899999
Q ss_pred EEEECCC-cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHh
Q 030193 90 FVVDSND-RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITD 141 (181)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~ 141 (181)
||+|.+. +..+..+.+.+..++.... ...+|+++++||.|+........++.
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~ 135 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKK 135 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHH
Confidence 9999974 4455666666655544211 25799999999999987554444433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-18 Score=120.65 Aligned_cols=158 Identities=24% Similarity=0.311 Sum_probs=100.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc----ccCcccceEEEEEE-CCEEEEEEEcCCCCCccc-----ccccccccccEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~-----~~~~~~~~~d~~ 88 (181)
||+++|+.+|||||+.+.+.++..+. -.+|.+.....+.. ....+++||.||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999876542 24688887777764 567999999999875543 457778999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCccCCc---ceEEEEccc
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQR---HWYIQSTCA 160 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~S~ 160 (181)
|||+|+.+.+ +......+...+.. ...++..+-++++|+|+..+...+++.+... .....+. .+.++.||.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999997433 33443333333221 1226899999999999976432222211111 0111111 478999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
.+ ..+-+++..+++.|.
T Consensus 160 ~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp TS-THHHHHHHHHHHTTS
T ss_pred cC-cHHHHHHHHHHHHHc
Confidence 99 589999999998764
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=119.80 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=105.3
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccc---cCcccce-EEEEEECCEEEEEEEcCCCC------Cc------ccc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-VETVEYKNISFTVWDVGGQD------KI------RPL 77 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~t~~~~-~~~~~~~~~~~~~~d~~g~~------~~------~~~ 77 (181)
..+...|+|+|.||+|||||.|.+++...... ..|+.-. ...+.-+..++.++||||-- ++ ...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 35678999999999999999999999986532 3344333 33455677999999999921 11 111
Q ss_pred cccccccccEEEEEEECCCccc--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---------------C--HhH
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------------N--AAE 138 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---------------~--~~~ 138 (181)
.......+|.++.++|+++... ...+...+.++. .+|-++|.||.|..... . ..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys------~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS------KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh------cCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 2234478999999999985321 122333344432 58889999999986421 1 223
Q ss_pred HHhhhCCCc-cC----Ccce----EEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 139 ITDKLGLHS-LR----QRHW----YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~-~~----~~~~----~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++..+.... .+ ..+| .+|.+||.+|+|++++-++|.....
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 333333221 11 1234 3899999999999999999987643
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-17 Score=121.30 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=112.6
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccceEEEEEEC-CEEEEEEEcCCC---------CCccccccc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQ---------DKIRPLWRH 80 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~---------~~~~~~~~~ 80 (181)
...-+.|+++|-.|+|||||.|++++.... ....|.+....++.+. +..+.+-||.|- +.|++....
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 356678999999999999999999987654 2345777777777777 589999999993 234554444
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
. ..+|+++.|+|+++|.-.+.+ +...+.+.+.....+|+++|.||+|+..... ...+.... . ..+.+|
T Consensus 269 ~-~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~iS 337 (411)
T COG2262 269 V-KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFIS 337 (411)
T ss_pred h-hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEEE
Confidence 4 579999999999998543333 3344555554446799999999999875543 22222111 1 356799
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++|+|++.+.+.|.+.+.
T Consensus 338 A~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 338 AKTGEGLDLLRERIIELLS 356 (411)
T ss_pred eccCcCHHHHHHHHHHHhh
Confidence 9999999999999998775
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=130.52 Aligned_cols=146 Identities=21% Similarity=0.169 Sum_probs=98.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|++++|||||+++|++..- .+. .-|.+.....++.++..+.++|+|||.+|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 4578999999999999999999985210 000 113333444566678899999999999998
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+... ....+++.. +.. .++| +++++||+|+.+..+ .+ ++...+..-.+.
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILL-AKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 877777788999999999975321 222333333 332 3567 789999999976322 12 222222222233
Q ss_pred CcceEEEEcccCCCCC
Q 030193 150 QRHWYIQSTCATSGEG 165 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~ 165 (181)
..+++++++|+.++.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 3468899999988753
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=129.93 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=104.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccccc------CcccceEEEE-----------------EE-------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI------PTIGFNVETV-----------------EY------------- 58 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~t~~~~~~~~-----------------~~------------- 58 (181)
+-.++|+++|+.++|||||+.+|++....... -|.+..+... ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 56789999999999999999999975432111 1222111110 00
Q ss_pred ---CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 59 ---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 59 ---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
....+.++|+|||++|..........+|++++|+|+.+........+.+. .+... .-.++++|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHHH
Confidence 02478999999999998877777789999999999986311122223332 22211 1247899999999986433
Q ss_pred HhH----HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 136 AAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 136 ~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.++ +...+.. .....++++++||++|.|+++|++.|.+.+.
T Consensus 189 ~~~~~~ei~~~l~~--~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKG--TIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHh--hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 222 2222111 1123568999999999999999999987554
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=129.37 Aligned_cols=147 Identities=17% Similarity=0.113 Sum_probs=94.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-----------------------------cc-------cCcccceEEEEEECCE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-----------------------------TT-------IPTIGFNVETVEYKNI 61 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~-------~~t~~~~~~~~~~~~~ 61 (181)
++|+++|+.++|||||+++|+...-. +. .-|.+.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 47999999999999999999642200 00 0134444555667788
Q ss_pred EEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030193 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI 139 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~ 139 (181)
++.++|||||++|.......+..+|++++|+|+..... ....+.+. +.... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999987766677789999999999964321 11112121 12211 1346899999999875321 1222
Q ss_pred HhhhC--CCccCCcceEEEEcccCCCCCHHH
Q 030193 140 TDKLG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 140 ~~~~~--~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
...+. .......+++++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22221 001111246799999999999885
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=135.96 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=102.4
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcc-c-------------c----------------------cCc
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-T-------------T----------------------IPT 48 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~-------------~----------------------~~t 48 (181)
+.+.+.+......++|+++|++++|||||+++|+...-. . . .-|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 445566666677899999999999999999999853210 0 0 013
Q ss_pred ccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030193 49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.+..+..+..++.++.++||||++.|.......+..+|++++|+|+..... ....+.+ .++... ...++++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~-~~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHS-FIASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHH-HHHHHh--CCCeEEEEEEec
Confidence 333444566678899999999998887666666789999999999964321 1111111 112211 136899999999
Q ss_pred CCCCCC--CHhHHHhhhC--CCccCCcceEEEEcccCCCCCHHH
Q 030193 129 DLPNAM--NAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 129 D~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+.+.. ..+++...+. ...+.-.+++++++||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 997421 1222322221 001111235789999999999874
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=127.81 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=103.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc------cc-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|+.++|||||+++|.+. .. .+ ..-|.+.....++.++.++.++||||+..|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 56789999999999999999999632 10 01 1114455555566677899999999999887
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHH----hhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEIT----DKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~~~~----~~~~~~~~~ 149 (181)
.........+|++++|+|+.+.. ..........+.. .++| +++++||+|+.+... .+.+. ..+....+.
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 77666667899999999986432 2222222233332 3677 578999999975322 11122 222111222
Q ss_pred CcceEEEEcccC---CCCC-------HHHHHHHHHHHhh
Q 030193 150 QRHWYIQSTCAT---SGEG-------LYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~---~~~~-------i~~~~~~i~~~l~ 178 (181)
...++++++|+. ++.| +.++++.+.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 335788888875 4555 7788888877653
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=128.46 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=102.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c-------------------------ccc-------cCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VTT-------IPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~-------------------------~~~-------~~t~~~~~~~~~~~~ 60 (181)
...++|+++|+.++|||||+.+|+... . .+. ..|.+.....++.++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456899999999999999999997521 0 011 114445555677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCC-
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN- 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~- 132 (181)
..++|+|+|||.+|.......+..+|++++|+|+.... .+ ....+.|... .. .++| +++++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEccccccc
Confidence 99999999999999888888889999999999997531 11 1233333322 22 3555 789999999432
Q ss_pred ---CCC----HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 133 ---AMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ---~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+.. .+++...+....+...+++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 122 233333333333444568999999999999864
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-16 Score=114.25 Aligned_cols=153 Identities=22% Similarity=0.219 Sum_probs=104.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cc-cCcccceEEEEEECCEEEEEEEcCCC----CCcc---cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQ----DKIR---PLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~d~~g~----~~~~---~~~~~~~~~~ 85 (181)
-...++++|.|++|||||+++|++.+.. ++ ..|....-.-+++++.++|++|+||- ...+ ...-...++|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 4568999999999999999999987743 21 22333333457889999999999982 1111 2344566999
Q ss_pred cEEEEEEECCCccc-HHHHHHHHHHH----------------------------------------hcCCCC--------
Q 030193 86 QGLIFVVDSNDRDR-VVEARDELHRM----------------------------------------LNEDEL-------- 116 (181)
Q Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~~-------- 116 (181)
|++++|+|+..... .+.+.+.+.+. +.++..
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999985543 32333222221 111000
Q ss_pred ----------------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 117 ----------------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 117 ----------------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.=+|.+.|.||+|+...++.+.+.+.. .++.+||+.++|++++.+.|.+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 124789999999998754444444433 4678999999999999999998763
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=122.59 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=113.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-----------ccc-------CcccceEEEEEE-----CCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-----------TTI-------PTIGFNVETVEY-----KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------~~~-------~t~~~~~~~~~~-----~~~~~~~~d~~g~ 71 (181)
++..|..|+.+-.+|||||..|++...-. +.. -|+.....++.+ +.+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 45667889999999999999999753210 110 022222222222 4589999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcc
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~ 148 (181)
-+|.-...+.+..|.+.++|+|++.--.-+.+...+..+- .+.-++.|+||+|++... ..+++...+++...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999985433344455555543 478899999999998653 23455555555432
Q ss_pred CCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
..+.+|||+|.|++++++.|++.+...
T Consensus 162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 162 -----DAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred -----hheeEecccCCCHHHHHHHHHhhCCCC
Confidence 356799999999999999999988653
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=102.27 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=71.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--cc--cCcccceEEEEEECCEEEEEEEcCCCCCc---------ccccccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT 85 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~~~~ 85 (181)
+|+++|.+|+|||||+|+|++.... +. ..|.......+...+..+.++||||-..- .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 22 22444545566778899999999995321 11122233789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
|++++|+|+.++. ......+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~--~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI--TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS--HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC--CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999987632 233333434343 47999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=113.84 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=77.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc--c----------ccc-------CcccceEEEEEEC----------CEEEEEEEcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI--V----------TTI-------PTIGFNVETVEYK----------NISFTVWDVG 69 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~--~----------~~~-------~t~~~~~~~~~~~----------~~~~~~~d~~ 69 (181)
+|+++|+.++|||||+.+|+...- . +.. -|.......+.+. ++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975321 0 000 1222222222232 7889999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|+.+|......+++.+|++++|+|+.+....+. ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999986544332 333333322 368999999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=112.86 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=99.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-c----cCcccceEEEEEECCEEEEEEEcCCCCCccc-----------ccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY 81 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~~ 81 (181)
++|+++|.+|+||||++|++++..... . ..|...........+..+.++||||-..... .+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999987542 1 2366666667777889999999999543321 11222
Q ss_pred cccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCccCCcceEEEE
Q 030193 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRHWYIQS 157 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (181)
..+.|++++|+++.+.. ......+.+.+.+... .-.++++++|+.|.......++...... ....+.++-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 35789999999987521 1122223333333211 1258999999999776544333322111 1111222212222
Q ss_pred c-----ccCCCCCHHHHHHHHHHHhhh
Q 030193 158 T-----CATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~-----S~~~~~~i~~~~~~i~~~l~~ 179 (181)
. |+..+.++++|++.+.+.+..
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2 256678899999999887764
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=120.30 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=106.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcc---------cccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~ 81 (181)
+..++|+++|+||+|||||+|.|.+.+.. +..| |.+.-...++..++.+.+.||+|-..-. ......
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 67899999999999999999999999865 3333 6677778889999999999999943310 112233
Q ss_pred cccccEEEEEEECCC--cccHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcce
Q 030193 82 FQNTQGLIFVVDSND--RDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~-----~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (181)
++.+|++++|+|+.. -++-..+.+.+...-. -.+..+.|++++.||+|+..... ....-..+......+..-
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 467999999999932 2221222222222111 01123478999999999976521 111000111111111122
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
...++|+++++|++++...+.+.+..
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHH
Confidence 45569999999999999999887653
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-16 Score=129.20 Aligned_cols=114 Identities=21% Similarity=0.142 Sum_probs=85.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-----c---c------cc-------cCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----I---V------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-----~---~------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++..+|+|+|++++|||||+++|+... . . +. .-|.+.....+.+++..++++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 456789999999999999999996421 0 0 00 1255556677888999999999999988
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|...+...++.+|++++|+|+.+.. +.....+...+.. .++|+++++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~--~~qt~~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGV--EPQSETVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCC--CHHHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 8888888889999999999997542 2222223333333 46899999999998753
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.5e-16 Score=120.58 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=113.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccccc---CcccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.+=|-|+|+..+|||||+..|.+-...... -|..+.-+.+.. .+-+++|+|||||..|.+++.+...-.|.+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 46777889999999999999999887654221 133333333333 56899999999999999999999899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC----CcceEEEEcccCCCCCH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~~i 166 (181)
|+.+.+-- .. .-.+-++..+..++|+|+.+||+|.+. ...+.+.+.+....+. ..+++++++||++|+|+
T Consensus 231 VVAadDGV--mp---QT~EaIkhAk~A~VpiVvAinKiDkp~-a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGV--MP---QTLEAIKHAKSANVPIVVAINKIDKPG-ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCc--cH---hHHHHHHHHHhcCCCEEEEEeccCCCC-CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99997521 11 111222333336899999999999763 4555555555433332 34688999999999999
Q ss_pred HHHHHHHHHH
Q 030193 167 YEGLDWLSNN 176 (181)
Q Consensus 167 ~~~~~~i~~~ 176 (181)
+.|-+.+.-.
T Consensus 305 ~~L~eaill~ 314 (683)
T KOG1145|consen 305 DLLEEAILLL 314 (683)
T ss_pred HHHHHHHHHH
Confidence 9998887653
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=116.64 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=83.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCcccceEE--EEEECC--EEEEEEEcCCCCCccc-----
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRP----- 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~----- 76 (181)
.++|+++|++|+|||||+|+|++..+... .+|...... .+...+ +++++|||||-.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998876422 223333332 233344 6799999999432211
Q ss_pred ---------------------ccccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 77 ---------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 77 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+...+. .+|+++|+++.+. ..+...+..+.+.+.. ++|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK----RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc----cCCEEEEEECCCcCCH
Confidence 1112223 4788999999864 2334443334444442 5899999999998764
Q ss_pred CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 134 MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.+.....+.. ...+...++++|....
T Consensus 159 ~e~~~~k~~i-~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 159 EELKEFKQRI-MEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHH-HHHHHHcCCceECCCC
Confidence 3333222222 2223334455655544
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.9e-16 Score=126.90 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=82.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--------cc------cc-------cCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------IV------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--------~~------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++..+|+++|++++|||||+++|+... .. +. .-|.+.....+.+.+..++++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 567799999999999999999997311 00 00 1144445566788899999999999988
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
|.......++.+|++++|+|+...- +.........+.. .++|+++++||+|+..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~--~~qt~~~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGV--EPQSETVWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCc--chhhHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8777777788999999999986432 2222222233333 4689999999999874
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=114.99 Aligned_cols=76 Identities=26% Similarity=0.416 Sum_probs=53.0
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-------cccCcccceEEE-------------------EE-ECCEEEEEEEcCCC-
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVET-------------------VE-YKNISFTVWDVGGQ- 71 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~-------~~~~t~~~~~~~-------------------~~-~~~~~~~~~d~~g~- 71 (181)
|+++|.|++|||||+|++++.... +..|+.+..... .+ ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 223333332221 11 13368999999996
Q ss_pred ---CCccccccc---ccccccEEEEEEECC
Q 030193 72 ---DKIRPLWRH---YFQNTQGLIFVVDSN 95 (181)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 95 (181)
++++..... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 344443333 478999999999996
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=116.67 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=104.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------------------cc---c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------------------IV---T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------------------~~---~-------~~~t~~~~~~~~~~~~ 60 (181)
...++++++|+.++||||++-+|+.+. +. + ..-|++.....++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457899999999999999999996421 00 0 0124555566677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc--------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++++|+|+|||.+|-........++|+.++|+|+.+.+ ........+.+.+. -..+|+++||+|.++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~v~ 159 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDLVS 159 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEcccccc
Confidence 99999999999999888888889999999999997542 22222233444433 357899999999986
Q ss_pred C--CCHhHHHhhh----CCCccCCcceEEEEcccCCCCCHHH
Q 030193 133 A--MNAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
- ...+++.... ..-.+..-+++++++|+.+|.|+.+
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2 2233333322 2223333468899999999999864
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-17 Score=123.77 Aligned_cols=168 Identities=16% Similarity=0.181 Sum_probs=117.8
Q ss_pred HHhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCCCCCc----cccc-
Q 030193 9 FSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI----RPLW- 78 (181)
Q Consensus 9 ~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~----~~~~- 78 (181)
+++.+. .....++++|.|++|||||+|.+...... . ...|..+....++++-.++++.||||-.+. ++..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence 344442 57789999999999999999999887754 2 244666667778888889999999993211 1111
Q ss_pred ----ccccccccEEEEEEECCCcccHHHHHH--HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcc
Q 030193 79 ----RHYFQNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 79 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
-...+--..++|++|++..+++.-..+ .|..+ +....+.|+|+|+||+|+-..+.+.+-.+.+........+
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 111123457999999998876655544 33333 2223589999999999998776655544444333333445
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++++++|+.+.+|+.++-...++.+.
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHH
Confidence 89999999999999998888887765
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=112.61 Aligned_cols=160 Identities=18% Similarity=0.301 Sum_probs=105.3
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccc---ccCcccc-eEEEEEECCEEEEEEEcCCCCC-------ccccccccc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGF-NVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF 82 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~-~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~ 82 (181)
....++|+++|..|+||||+||+|++.+... ...+.+. ......+.+..+.+||+||-++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4678999999999999999999999755322 1112221 1222334558899999999654 666677888
Q ss_pred ccccEEEEEEECCCcccHHHHHHH-HHHHhcCCCCCCCeEEEEEeCCCCCCCC----------C--HhH-HHhhh--CCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDE-LHRMLNEDELRDAVLLVFANKQDLPNAM----------N--AAE-ITDKL--GLH 146 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~piivv~nK~D~~~~~----------~--~~~-~~~~~--~~~ 146 (181)
...|++++++++.++. -..+.. +..++... .+.++++++|++|...+. + .++ +...- ...
T Consensus 116 ~~~DLvL~l~~~~dra--L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 116 PKLDLVLWLIKADDRA--LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred hhccEEEEeccCCCcc--ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999997653 233333 33333321 248999999999975431 0 011 11100 011
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.++ .-.|++..|...++|++.+...+++.+.
T Consensus 192 ~~q-~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQ-EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHh-hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111 1236778889999999999999999875
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=114.10 Aligned_cols=133 Identities=27% Similarity=0.404 Sum_probs=100.2
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (181)
||.++....+..++..+.+||++|+...+..|.+++.++++++||+|+++. ..+......+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 356677777888899999999999999999999999999999999999874 4566777788888887766
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHH----HhhhCCC-ccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 117 RDAVLLVFANKQDLPNA------------------MNAAEI----TDKLGLH-SLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~------------------~~~~~~----~~~~~~~-~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
.++|+++++||.|+..+ ...++. ...+... .-.+..+.+..++|.+..++..+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 78999999999997431 111111 1111110 001245666779999999999999999
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+..
T Consensus 307 ~~~i~~ 312 (317)
T cd00066 307 KDIILQ 312 (317)
T ss_pred HHHHHH
Confidence 887754
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-15 Score=122.70 Aligned_cols=105 Identities=19% Similarity=0.153 Sum_probs=78.0
Q ss_pred EcCCCCChHHHHhhhhcCCc--------------cc-------ccCcccceEEEEEECCEEEEEEEcCCCCCcccccccc
Q 030193 23 VGLDAAGKTTILYKLKLGEI--------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 23 ~G~~~~GKSsli~~l~~~~~--------------~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 81 (181)
+|++++|||||+++|+...- .+ ...|.+.....+.+.++.+++|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999954210 00 1124445556788899999999999999888888888
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.+|++++|+|++....... ...|..... .++|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 899999999999986544332 233333222 4689999999999874
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-15 Score=112.34 Aligned_cols=132 Identities=26% Similarity=0.394 Sum_probs=99.4
Q ss_pred cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCCC
Q 030193 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.++....+...+..+.+||++|+...+..|.+++.++++++||+|+++. ..+......|..++......
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 45666777778889999999999999999999999999999999999864 35677777888888877777
Q ss_pred CCeEEEEEeCCCCCCC-----------------CCHhH----HHhhhCCCcc--CCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 118 DAVLLVFANKQDLPNA-----------------MNAAE----ITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 118 ~~piivv~nK~D~~~~-----------------~~~~~----~~~~~~~~~~--~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
+.|+++++||.|+..+ ...+. +...+....- .+..+.+..++|.+-.++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 8999999999998531 11111 1222211110 12346667788999999999999888
Q ss_pred HHhhh
Q 030193 175 NNIAT 179 (181)
Q Consensus 175 ~~l~~ 179 (181)
+.+.+
T Consensus 331 ~~I~~ 335 (342)
T smart00275 331 DIILQ 335 (342)
T ss_pred HHHHH
Confidence 87654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=107.89 Aligned_cols=153 Identities=26% Similarity=0.285 Sum_probs=98.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc-------ccccCcccceEEEEEECCEEEEEEEcCCCCCcc----c---cccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR----P---LWRHYFQN 84 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~----~---~~~~~~~~ 84 (181)
.|+++|-|++|||||++++.+.++ .+-.|..+.... .....|.+-|.||--.-. - ..-..+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 578999999999999999987653 233444444222 455679999999932111 1 12233467
Q ss_pred ccEEEEEEECCCcc------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCccCCcceEEEE
Q 030193 85 TQGLIFVVDSNDRD------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 85 ~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
|.+++.|+|++..+ .+..+...+..+- ..+.++|.++|+||+|+... +..+++...+.... ....+++
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~--~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--~~~~~~~- 312 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS--PKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--GWEVFYL- 312 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhh--HHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc--CCCccee-
Confidence 99999999998543 2333333333332 23357899999999996543 34444444443211 1111233
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+|+.+++|++++...+.+.+.+
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 313 ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-14 Score=112.16 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=71.2
Q ss_pred EEEEEEEcCCCCC-----cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 61 ISFTVWDVGGQDK-----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 61 ~~~~~~d~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..+.++||||-.. ........+..+|+++||+|+.+..+. .+..+.+.++... .+.|+++|+||+|+.+..+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~--~DeeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSI--SDEEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCCh--hHHHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4678999999532 122233467899999999999764332 2334445454322 2369999999999865322
Q ss_pred --HhHHHhhhCCC--ccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 136 --AAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.+.+....... ........+|++||++|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33333321100 00001225899999999999999999887
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=108.69 Aligned_cols=78 Identities=28% Similarity=0.386 Sum_probs=53.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-cc--CcccceEEEEE------------------------ECCEEEEEEEcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TI--PTIGFNVETVE------------------------YKNISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~--~t~~~~~~~~~------------------------~~~~~~~~~d~~g 70 (181)
++|+++|.||+|||||+|+|++..... .. .|.+.....+. .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876531 12 12222221111 1236789999999
Q ss_pred C----CCcccccccc---cccccEEEEEEECC
Q 030193 71 Q----DKIRPLWRHY---FQNTQGLIFVVDSN 95 (181)
Q Consensus 71 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 95 (181)
- .........+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333333333 78999999999996
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=119.52 Aligned_cols=140 Identities=22% Similarity=0.225 Sum_probs=91.6
Q ss_pred CChHHHHhhhhcCCcccccC---cccceEEEEEECC------------------EEEEEEEcCCCCCccccccccccccc
Q 030193 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYKN------------------ISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 28 ~GKSsli~~l~~~~~~~~~~---t~~~~~~~~~~~~------------------~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
++||||+.++.+.......+ |..+..+.+.... -.+.+||||||+.|...+...+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 35999999999877653222 3333223332211 13899999999999888888888899
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------------------HhHHHh----
Q 030193 87 GLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------------AAEITD---- 141 (181)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------------~~~~~~---- 141 (181)
++++|+|+++ +++++.. ..+.. .++|+++|+||+|+..... .+++..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999975 3333222 22332 3689999999999864211 111110
Q ss_pred ---hhCCCccC----------CcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 142 ---KLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 142 ---~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.+....+. ...++++++||++|+|++++++.|..
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 01111111 23578999999999999999998864
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=107.09 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=73.6
Q ss_pred EEEEEEEcCCCCCc---ccccccccc---c--ccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 61 ISFTVWDVGGQDKI---RPLWRHYFQ---N--TQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~~~d~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
..+.+||+||+.+. +..+..+.+ . .+++++++|+.......... .++........ .+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 46899999997553 233322222 2 78999999996533222222 22222111111 478999999999998
Q ss_pred CCCCHhHHHhhhCC-----------------------CccCC--cceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 132 NAMNAAEITDKLGL-----------------------HSLRQ--RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 132 ~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+..+.++..+.+.. ..++. ...+++++|++++.|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76555444433321 00111 2247899999999999999999998875
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-15 Score=94.53 Aligned_cols=139 Identities=20% Similarity=0.201 Sum_probs=93.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCC----CCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~----~~~~~~~~~~~~~~d~~i~v~d 93 (181)
-||+++|..|+|||||.+++.+.... +..|..+.+ .+ =-.+||||. .++..........+|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~-----~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEF-----ND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-hcccceeec-----cC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 47899999999999999999887752 222322211 11 113699994 3333334444578999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
++++++. ....+..+ ...|+|-|+||.|+.+....+..++.+.....+ ++|++|+.++.|++++++.+
T Consensus 74 and~~s~--f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESR--FPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGAE----PIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCcccc--CCcccccc------cccceEEEEecccccchHhHHHHHHHHHHcCCc----ceEEEeccCcccHHHHHHHH
Confidence 9887542 22222222 245699999999998654444444444333333 79999999999999999988
Q ss_pred HHH
Q 030193 174 SNN 176 (181)
Q Consensus 174 ~~~ 176 (181)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 653
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=107.11 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=114.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--cccc-------cC------cccce----EEEEEECCEEEEEEEcCCCCCccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------IP------TIGFN----VETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-------~~------t~~~~----~~~~~~~~~~~~~~d~~g~~~~~~ 76 (181)
.-.+|+|+.+..+|||||+..|+.+. |... .. ..++. -+.+.+++++++|+|||||.+|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45689999999999999999998754 2111 11 12222 245788999999999999999999
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh---CCC--ccCCc
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLH--SLRQR 151 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~---~~~--~~~~~ 151 (181)
...+.+.-.|++++++|+.+- .+.+..-++.+.+. .+.+.|+|+||+|.++....+-+...+ ... ...+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999742 23344445555555 478889999999988764333222222 111 12346
Q ss_pred ceEEEEcccCCCC----------CHHHHHHHHHHHhhhc
Q 030193 152 HWYIQSTCATSGE----------GLYEGLDWLSNNIATK 180 (181)
Q Consensus 152 ~~~~~~~S~~~~~----------~i~~~~~~i~~~l~~~ 180 (181)
++|++-.|+.+|. ++..||+.|.+.+.+.
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 7898889988753 5889999999887653
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=106.12 Aligned_cols=159 Identities=17% Similarity=0.097 Sum_probs=109.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC------cccce-----EE---------EE------EEC------CEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP------TIGFN-----VE---------TV------EYK------NIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------t~~~~-----~~---------~~------~~~------~~~ 62 (181)
+-.++|+.+|+..+|||||..+|.+-....... |+... ++ .+ ... -.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 568999999999999999999998754321110 00000 00 00 001 146
Q ss_pred EEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhH
Q 030193 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAE 138 (181)
Q Consensus 63 ~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~ 138 (181)
+.|.|.|||+-..+.+-+...-.|++++|+++++++...+..+.+..+--. .-..++++.||+|+++.+. .++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 899999999887777666666789999999999876655555555443111 1367999999999998643 333
Q ss_pred HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+.+..+-. --.+.|++++||.++.|++-+++.|.+.+.
T Consensus 165 Ik~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 165 IKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 33322222 124678999999999999999999998875
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=118.32 Aligned_cols=113 Identities=21% Similarity=0.116 Sum_probs=79.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------cccc-------cCcccceEE----EEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT-------IPTIGFNVE----TVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~-------~~t~~~~~~----~~~~~~~~~~~~d~~g~ 71 (181)
++..||+++|+.++|||||+++|+... +.+. ..|...... .+++.++.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997421 0111 113332222 24567899999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+|......+++.+|++++|+|+.+.... .....|..... .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~-~t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMP-QTETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCc-cHHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 99988888888999999999999753211 11222322222 3578889999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-14 Score=102.35 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=93.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-----cCcccceEEEEEECCEEEEEEEcCCCCCcc-------ccc----ccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLW----RHY 81 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~----~~~ 81 (181)
.+|+++|..|+||||++|.+++...... ..|...........+..+.++||||-.+.. ... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4799999999999999999999885432 236666666678899999999999932111 111 112
Q ss_pred cccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCccCCcceEEE
Q 030193 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG----LHSLRQRHWYIQ 156 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 156 (181)
..+.|++|||+++.+.. .-....+.+...+...- -..++||.|..|.......++..+... ...++.++-.|.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 35689999999997321 11222334445544321 246899999999776655433322110 111222222344
Q ss_pred EcccC------CCCCHHHHHHHHHHHhhh
Q 030193 157 STCAT------SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 157 ~~S~~------~~~~i~~~~~~i~~~l~~ 179 (181)
..+.+ ....+.+|++.+-+.+.+
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 44444 335578888888776654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=114.79 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=78.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------ccccC-------cccceEEEEEE----CCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTIP-------TIGFNVETVEY----KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~~-------t~~~~~~~~~~----~~~~~~~~d~~g~ 71 (181)
++..+|+++|+.++|||||+.+|+...- .+..+ |.......+.+ .++.++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 5567899999999999999999975321 01111 22222222322 4788999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+|.......++.+|++++|+|+...-. ......|..... .+.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 9998888888899999999999875322 223334443333 256789999999976
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=99.22 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=75.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc----cCcccceEEEEEECCEEEEEEEcCCCCCccc---c-------ccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------WRH 80 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~-------~~~ 80 (181)
...++|+++|.+|+|||||+|++++...... ..|...........+..++++||||-..... . ...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 6789999999999999999999999875321 2244444455566788999999999654421 0 122
Q ss_pred ccc--cccEEEEEEECCCcccHHH----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 81 YFQ--NTQGLIFVVDSNDRDRVVE----ARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 81 ~~~--~~d~~i~v~d~~~~~s~~~----~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++. ..++++||..++.. ++.. +.+.+.+.+... --.++++|.||+|...+
T Consensus 109 ~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 332 47888888766532 2222 223333333311 11579999999998643
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=103.59 Aligned_cols=153 Identities=17% Similarity=0.061 Sum_probs=112.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc------ccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.|+..|+-..|||||+..+.+..... -.-|++..+.....++..+.++|+|||+++-...-......|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47889999999999999999877542 123677777777778889999999999999988888888999999999
Q ss_pred ECCC-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSND-RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~-~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|+++ ......-.-...+.+. ....++|+||+|..+....++..+....... -.+.++|.+|+++|.|++++.+
T Consensus 82 ~~deGl~~qtgEhL~iLdllg-----i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLLG-----IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchhhHHHHHHHHhcC-----CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHH
Confidence 9953 2222222222333333 3456999999999876544444333321111 2345789999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
.|.+..
T Consensus 156 ~l~~L~ 161 (447)
T COG3276 156 ELIDLL 161 (447)
T ss_pred HHHHhh
Confidence 999876
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.9e-13 Score=98.11 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=72.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc--ceEEEEEECCEEEEEEEcCCCCCcccc-------ccccc-
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL-------WRHYF- 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~- 82 (181)
...++|+++|.+|+||||++|++++.... +..++.+ .........+.+++++||||-.+.... ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999988743 2222222 222233457889999999996543211 11111
Q ss_pred -ccccEEEEEEECCCcccHHHH----HHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 83 -QNTQGLIFVVDSNDRDRVVEA----RDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 -~~~d~~i~v~d~~~~~s~~~~----~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
...|+++||..++.. .+... .+.+...+... .-.+++++.|+.|...
T Consensus 116 ~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 258999999665422 22222 23333333321 1247999999999763
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=101.60 Aligned_cols=134 Identities=27% Similarity=0.465 Sum_probs=98.6
Q ss_pred cCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc----------cHHHHHHHHHHHhcCCC
Q 030193 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~ 115 (181)
.||+|+....+..++..+.++|++||..-+.-|.+++.+++++|||+++++.+ .+......|..++....
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 35788888999999999999999999999999999999999999999998643 23333456777777777
Q ss_pred CCCCeEEEEEeCCCCCCC-----------------CCHhH----HHhhhCCCcc-CCcceEEEEcccCCCCCHHHHHHHH
Q 030193 116 LRDAVLLVFANKQDLPNA-----------------MNAAE----ITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~-----------------~~~~~----~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
..+.++|+++||.|+..+ ...++ ++..+..... ....+.+-.++|.+-.+++.+|+.+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 788999999999999532 11111 1111111101 1134555667899999999999998
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+..
T Consensus 340 ~d~Ii~ 345 (354)
T KOG0082|consen 340 TDTIIQ 345 (354)
T ss_pred HHHHHH
Confidence 887653
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.5e-14 Score=100.13 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=99.6
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccc--------cC---------------cc-----------cceE---E
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--------IP---------------TI-----------GFNV---E 54 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------~~---------------t~-----------~~~~---~ 54 (181)
...++++.|+++|..|||||||+.+|...-.... .| |. +.+- +
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 4457889999999999999999999954211100 00 00 0000 0
Q ss_pred E-------E---------EECCEEEEEEEcCCCCC-cc--c----ccccc-cccccEEEEEEECCC---cccHHHHHHHH
Q 030193 55 T-------V---------EYKNISFTVWDVGGQDK-IR--P----LWRHY-FQNTQGLIFVVDSND---RDRVVEARDEL 107 (181)
Q Consensus 55 ~-------~---------~~~~~~~~~~d~~g~~~-~~--~----~~~~~-~~~~d~~i~v~d~~~---~~s~~~~~~~~ 107 (181)
. + ........++||||+-. |. + +...+ -...-+++||+|..+ +..|....-+-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 0 0 01346689999999732 11 0 11111 123557889999753 55555555555
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh-------hhCC-------CccCC---------cceEEEEcccCCCC
Q 030193 108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD-------KLGL-------HSLRQ---------RHWYIQSTCATSGE 164 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~-------~~~~-------~~~~~---------~~~~~~~~S~~~~~ 164 (181)
-.++.+ .+.|.+++.||+|+.+..-..+|.. .+.. ...+. +++..+-+|+.+|.
T Consensus 174 cSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 174 CSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 555655 6799999999999987532222222 1110 00000 24567889999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
|.+++|..+.+.+.
T Consensus 251 G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 251 GFDDFFTAVDESVD 264 (366)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887664
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=103.93 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~- 137 (181)
.++.+.|+||+|....... ....+|.+++|.++...+.++....- .+ ....++|+||+|+.......
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh------hhhheEEeehhcccchhHHHH
Confidence 4688999999997533322 34679999999875444444333321 11 23348999999987644322
Q ss_pred ---HHHhhhCCCccC--CcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 138 ---EITDKLGLHSLR--QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 138 ---~~~~~~~~~~~~--~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++...+...... .+..+++.+||+++.|++++++.+.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333333321111 12347999999999999999999988653
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-13 Score=99.65 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=105.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEEC----CEEEEEEEcCCCCCcccccccccccc----cE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT----QG 87 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~----d~ 87 (181)
..-+|+|+|+.++||||||.+|.+-+........++.+..+..+ -.++.+|-..|+..+..+....+... -+
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 56799999999999999999999988433333444444333322 25899999999888777766555432 47
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC-----------------------------------------------------
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNED----------------------------------------------------- 114 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------------------------------------- 114 (181)
+|++.|+++|+.+-...+.|...+.++
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 888999999865444333333221110
Q ss_pred --------CCCCCeEEEEEeCCCCCCCCCH------------hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 115 --------ELRDAVLLVFANKQDLPNAMNA------------AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 115 --------~~~~~piivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
..-++|++||+||||...-.+. +...+.+++ ..+...|.+|+++..|++-++.+|+
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCL----r~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCL----RYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHH----HcCceeEEeecccccchHHHHHHHH
Confidence 0024679999999998542111 111122222 2355678899999999999999999
Q ss_pred HHhh
Q 030193 175 NNIA 178 (181)
Q Consensus 175 ~~l~ 178 (181)
+.+.
T Consensus 287 hr~y 290 (473)
T KOG3905|consen 287 HRSY 290 (473)
T ss_pred HHhc
Confidence 8765
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=97.01 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=83.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.....|+++|.+|+|||||++.+.+..-.. .....+. +......+.++.++|+||+. .... ...+.+|++++|+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEe
Confidence 446679999999999999999998753211 1111111 12233467889999999864 2222 23478999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHH----hhhCCCccCCcceEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEIT----DKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+..... .....+...+.. .+.| +++|+||+|+.+... .+++. ..+....+ .+.+++.+||++.
T Consensus 113 a~~~~~--~~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~ 181 (225)
T cd01882 113 ASFGFE--METFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVH 181 (225)
T ss_pred cCcCCC--HHHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccC
Confidence 975332 222333344433 3466 456999999874322 22222 22221111 1347889998876
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=90.99 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=63.5
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhH
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE 138 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~ 138 (181)
....++++.|..-.....+ .-++.++.|+|+.+.++... .....+ ...-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGI------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHh------hhccEEEEEhhhccccccccHHH
Confidence 4567788888422222222 12678999999975444211 111111 2234899999999853 22333
Q ss_pred HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+...... + +...+++++|+++|+|++++++++.+.+.-
T Consensus 160 ~~~~~~~--~-~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 160 MERDAKK--M-RGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred HHHHHHH--h-CCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 2222211 1 224579999999999999999999987653
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=113.00 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=80.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------ccccC-------cccceEEEEEE----------------C
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTIP-------TIGFNVETVEY----------------K 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~~-------t~~~~~~~~~~----------------~ 59 (181)
++..+|+|+|+.++|||||+++|+...- .+..+ |.......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 6778999999999999999999975331 01111 22222222322 2
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
++.++++|||||.+|.......++.+|++|+|+|+.+.-.. .....|..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 67889999999999999888888999999999999754221 22334444433 478999999999987
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-13 Score=99.70 Aligned_cols=145 Identities=20% Similarity=0.171 Sum_probs=102.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc-----------------cc-------------------ccCcccceEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----------------VT-------------------TIPTIGFNVETVEY 58 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-----------------~~-------------------~~~t~~~~~~~~~~ 58 (181)
+...+.+.+|...-||||||-+|+.+.- .+ ..-|+++.+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4567899999999999999999976420 00 01155666666777
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHH-H--HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-R--DELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~--~~~~~~~~~~~~~~~piivv~nK~D~~~~~- 134 (181)
++.+|.+-|||||++|...+.....-||++|+++|+ +.++... . ..+...+. -..+++..||+||++-.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHhC-----CcEEEEEEeeecccccCH
Confidence 889999999999999998888777889999999999 3332222 1 23444443 36799999999998743
Q ss_pred -CHhHHHhhhCCCcc---CCcceEEEEcccCCCCCHH
Q 030193 135 -NAAEITDKLGLHSL---RQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 -~~~~~~~~~~~~~~---~~~~~~~~~~S~~~~~~i~ 167 (181)
..+++...+. .++ .-....+++.||..|.|+-
T Consensus 157 ~~F~~I~~dy~-~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYL-AFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHH-HHHHHcCCCcceEEechhccCCccc
Confidence 3344444332 111 1123478999999999974
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=102.42 Aligned_cols=153 Identities=22% Similarity=0.210 Sum_probs=105.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCC----------------------c-----cc-------ccCcccceEEEEEEC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGE----------------------I-----VT-------TIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~----------------------~-----~~-------~~~t~~~~~~~~~~~ 59 (181)
....++++++|+.++|||||+-+++..- | .+ ..-|++.....++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3467899999999999999999996420 0 00 011455556667767
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHH------HHHHHHHhcCCCCCCCeEEEEEeCCCCCC-
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA------RDELHRMLNEDELRDAVLLVFANKQDLPN- 132 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~~piivv~nK~D~~~- 132 (181)
...++|+|+|||.+|-.........+|++++|+|++.. .|+.- ......+++.. .-..++|++||+|+++
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSW 330 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCc
Confidence 78999999999999998888888899999999999742 22211 11222222221 1457899999999986
Q ss_pred -CCCHhHHHhhh-----CCCccCCcceEEEEcccCCCCCHHHH
Q 030193 133 -AMNAAEITDKL-----GLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 133 -~~~~~~~~~~~-----~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+...+++...+ ....+...++.+++||..+|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 33444554433 23344555678999999999997543
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=99.70 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCCccccccccc--------ccccEEEEEEECCC---cccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSND---RDRVVEAR-DELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
.+.++|||||.++-..+.... ...-++++++|+.. +..|-... ..+.-.++ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 789999999977655544333 34558889999863 33332221 12222222 3799999999999
Q ss_pred CCCCC---------CH-----------hHHHhhhCCCccCC-cce-EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 130 LPNAM---------NA-----------AEITDKLGLHSLRQ-RHW-YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 130 ~~~~~---------~~-----------~~~~~~~~~~~~~~-~~~-~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+.+.. +. ..+...+. ..+.. ... .+++.|+++++|+++++..+-+++
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~-~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIA-ELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHH-HHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98621 01 11111111 11111 223 688999999999999999988764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-13 Score=100.40 Aligned_cols=156 Identities=14% Similarity=0.138 Sum_probs=82.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-cC-----cccceEEEEEECCE-EEEEEEcCCCCCccccccc-----cc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP-----TIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRH-----YF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~-----t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~-----~~ 82 (181)
..+++|+|+|++|+|||||||+|.|-...+. .. .+......+..... .+.+||.||.......... -+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5789999999999999999999976332211 11 11123344444543 6999999995322222222 24
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--C-----C------CCHhHHHhhhCCCccC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP--N-----A------MNAAEITDKLGLHSLR 149 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~--~-----~------~~~~~~~~~~~~~~~~ 149 (181)
...|.+|++.+- .|...+-++...+.+ .++|+.+|-||+|.. . + .-+++++... ...++
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c-~~~L~ 184 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC-LENLQ 184 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH-HHHHH
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH-HHHHH
Confidence 568887776554 466777677766665 579999999999961 0 1 1122322221 11111
Q ss_pred C---cceEEEEcccCCC--CCHHHHHHHHHHHhh
Q 030193 150 Q---RHWYIQSTCATSG--EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~---~~~~~~~~S~~~~--~~i~~~~~~i~~~l~ 178 (181)
+ ...++|-+|+.+- ..+..+.+.+.+.|.
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 2 2346888888864 457778888777654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=110.44 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=78.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------ccccC-------cccceEEEEEEC----------CEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTIP-------TIGFNVETVEYK----------NISFTV 65 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~~-------t~~~~~~~~~~~----------~~~~~~ 65 (181)
++..+|+++|+.++|||||+++|+...- .+..+ |+......+.+. ++.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 5567999999999999999999986321 01111 111111223332 678999
Q ss_pred EEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+||||+.+|.......++.+|++++|+|+.+.-.. .....|..... .++|+++++||+|..
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999999988888888999999999999753221 22334444333 368999999999986
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-13 Score=95.55 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=90.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCc---------------------ccceEEEEE--------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPT---------------------IGFNVETVE-------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~~t---------------------~~~~~~~~~-------- 57 (181)
.+...|+|-|+||+|||||++.|... .. ....|+ .+..+..+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35789999999999999999999531 10 001111 112222221
Q ss_pred ------------ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 58 ------------YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 58 ------------~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
..++.+.|++|.|--+...... .-+|.+++|..+.--+..+....-+.++ .-++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~---~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA---DMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH---TTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH---HhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEE
Confidence 1568899999998644443332 5599999999997655555555444444 349999
Q ss_pred eCCCCCCCC-CHhHHHhhhCCC--ccCCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 126 NKQDLPNAM-NAAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 126 nK~D~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
||.|..... ...+++..+.+. .-..+..|++.|||.++.|++++++.|.+.
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 999954322 223344333322 222345689999999999999999999874
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=104.79 Aligned_cols=156 Identities=22% Similarity=0.179 Sum_probs=104.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-----ccCcccceEEEEE----------------ECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~~~d~~g~~~ 73 (181)
-+.+-|+|+|+..+|||-|+..+.+.+... -...++..++... ++---+.++|||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 356778999999999999999998755431 1223333332221 2223578899999999
Q ss_pred cccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------C----------
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------M---------- 134 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------~---------- 134 (181)
|.+.+.+....||.+|+|+|+.. +++++. + +.++. .+.|+|+.+||+|-... .
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiES----i-~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----I-NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHH----H-HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 99999999999999999999953 333322 2 22332 47999999999996421 0
Q ss_pred --C-------HhHHHhhh-----CCCccC-C----cceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 135 --N-------AAEITDKL-----GLHSLR-Q----RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 135 --~-------~~~~~~~~-----~~~~~~-~----~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
. ...+.-.+ ....+. + .-+.+++|||.+|+|+-+|+-+|+++..
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0 11111111 111121 1 1256899999999999999999988644
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-12 Score=93.97 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=71.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccccc-----------CcccceEEEEEE--C--CEEEEEEEcCCCCC--------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVETVEY--K--NISFTVWDVGGQDK-------- 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~t~~~~~~~~~~--~--~~~~~~~d~~g~~~-------- 73 (181)
.++|+|+|.+|+|||||+|.|++....... ++..+....... . .+.++++||||-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999987643221 122233332222 2 36889999999211
Q ss_pred ----------ccc--------cc-ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 74 ----------IRP--------LW-RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 74 ----------~~~--------~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|.. .+ ...-...|++||+++++. .++...+-..++.+. ..+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 100 01 011124799999999974 345566655666666 368999999999987654
Q ss_pred CHhHHHh
Q 030193 135 NAAEITD 141 (181)
Q Consensus 135 ~~~~~~~ 141 (181)
+...+..
T Consensus 159 el~~~k~ 165 (281)
T PF00735_consen 159 ELQAFKQ 165 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-11 Score=84.47 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=58.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCcccceEEEEEECCEEEEEEEcCCCC--------Cccccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~ 84 (181)
-.-+|+++|-|.+|||||+..+....-. + ...|...--..+.+.+..+++.|.||-- +.+. ..+..+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQ-viavArt 139 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQ-VIAVART 139 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCce-EEEEeec
Confidence 3568999999999999999999876532 1 1222222223467789999999999932 2222 3344578
Q ss_pred ccEEEEEEECCCccc
Q 030193 85 TQGLIFVVDSNDRDR 99 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s 99 (181)
+|++++|.|+...+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999986543
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=87.14 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=88.4
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCcc-------cccC----------cccceEEEE----------------
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIP----------TIGFNVETV---------------- 56 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~----------t~~~~~~~~---------------- 56 (181)
+.........|+++|+.|+|||||+++++..... .... ..+.....+
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHH
Confidence 3444456788999999999999999999753100 0000 001111110
Q ss_pred ----EECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 57 ----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 57 ----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
...+..+.++|+.|.-.... .+....+..+.|+|+.+.+.... . .... ...|.++++||+|+.+
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAE 162 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccc
Confidence 01245778888888311111 11123556677888865432111 1 1111 2467899999999975
Q ss_pred CCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 133 AMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
... .++....+.. . ...++++++|++++.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~--~-~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKK--I-NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHH--h-CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 322 2333332211 1 1235799999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-12 Score=91.03 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=73.3
Q ss_pred CCcccccccccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLR 149 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (181)
+++..+...+++++|.+++|+|+.++. ++..+..|+... .. .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 678888888999999999999999877 888888777644 32 579999999999997543222 222222 2
Q ss_pred CcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 150 QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+.+++++++||++|.|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 34568999999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=94.19 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=56.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEEC-----------------CEEEEEEEcCCCCC-
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDK- 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~- 73 (181)
.+.++|+++|.||+|||||+|+|++.... .+.| |.+.+...+... +.+++++|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 67889999999999999999999887643 2223 445555554443 23589999999321
Q ss_pred ------cccccccccccccEEEEEEECC
Q 030193 74 ------IRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 74 ------~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
.....-..++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112223457899999999974
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=91.00 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~ 138 (181)
.++.+.|+||+|..... . .....+|.++++.+....+.+.... ... .++|.++|+||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e--~-~i~~~aD~i~vv~~~~~~~el~~~~---~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE--V-DIANMADTFVVVTIPGTGDDLQGIK---AGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh--h-HHHHhhceEEEEecCCccHHHHHHH---HHH------hhhccEEEEEcccccchhHHHH
Confidence 46889999999853222 1 2346678888886553222222222 122 2577899999999876543222
Q ss_pred HHhhh--CC----CccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 139 ITDKL--GL----HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 139 ~~~~~--~~----~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
....+ .. .....+..+++++|++++.|++++++++.+.+
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 11 11112234689999999999999999998864
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=96.38 Aligned_cols=130 Identities=26% Similarity=0.428 Sum_probs=94.0
Q ss_pred cccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCC
Q 030193 48 TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDEL 116 (181)
Q Consensus 48 t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~ 116 (181)
|+++....+.. .+..+.++|++|+...+..|.+++.+.+.+|||+++++.+ .+......|..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 35666677888 8899999999999999999999999999999999987532 466667788888887777
Q ss_pred CCCeEEEEEeCCCCCCC--------------------CCHhHHHh----hhCCCccCC---cceEEEEcccCCCCCHHHH
Q 030193 117 RDAVLLVFANKQDLPNA--------------------MNAAEITD----KLGLHSLRQ---RHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~--------------------~~~~~~~~----~~~~~~~~~---~~~~~~~~S~~~~~~i~~~ 169 (181)
.+.|++|++||.|+..+ ...+.... .+....-.. ..+.+..|+|.+..++..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 78999999999997421 11122111 111111111 4456667999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99887653
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=96.33 Aligned_cols=162 Identities=14% Similarity=0.198 Sum_probs=103.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEEC------CEEEEEEEcCCCCCccccccccccc----c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~d~~g~~~~~~~~~~~~~~----~ 85 (181)
..-.|+|+|..++|||||+.+|.+.+ ...++.+..|..++.. ..++.+|...|...+..+....+.. -
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 45799999999999999999997765 3445556555554432 2579999999977777776655543 2
Q ss_pred cEEEEEEECCCcccHHHHHHH-----------------------------HHHHhc---CC-----------------C-
Q 030193 86 QGLIFVVDSNDRDRVVEARDE-----------------------------LHRMLN---ED-----------------E- 115 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~-----------------------------~~~~~~---~~-----------------~- 115 (181)
-++++|+|.+.|+.+....+. |.++.. .. .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 478899999998755422221 111110 00 0
Q ss_pred ------------CCCCeEEEEEeCCCCCCCCCHh--------HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 116 ------------LRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 116 ------------~~~~piivv~nK~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.-++|++||++|+|.....+.+ ++...+-....-+++...|.||++...|++.++.+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 0146999999999975321100 11111111111234556777999999999999999988
Q ss_pred Hhhh
Q 030193 176 NIAT 179 (181)
Q Consensus 176 ~l~~ 179 (181)
.+..
T Consensus 262 ~l~~ 265 (472)
T PF05783_consen 262 RLYG 265 (472)
T ss_pred Hhcc
Confidence 7653
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.2e-12 Score=102.68 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=85.9
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCC--------------cccccC-------cccceEEEEEECC-EEEEEEEcCCC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTTIP-------TIGFNVETVEYKN-ISFTVWDVGGQ 71 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--------------~~~~~~-------t~~~~~~~~~~~~-~~~~~~d~~g~ 71 (181)
.++..+|+|+|+.++||||+..+++... +.+..+ |+......+.+++ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3678899999999999999999996421 111111 3334445677785 99999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
-+|.....+.++-+|+++.|+|+..--. ......|....+ .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~-~QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVE-PQTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCee-ecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 9999999999999999999999964322 233344544443 4899999999999764
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-12 Score=82.04 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=76.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-c-CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-I-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~-~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+||+++|+.|+|||+|+.++....+... . +|.+ +......+.+.++.+++|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 4899999999999999999977766421 1 3332 3334455668889999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
...++... |...+. .......|.++++||.|+.+.. ++.... +..++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 88887654 433333 2223568899999999974321 111111 1135579999999885
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=83.61 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCC----CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030193 61 ISFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 61 ~~~~~~d~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
..+.|+|+||-. .....+..++..+|++|||.++.+..+-... ..+.+.... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 458999999953 2335577788999999999999875443322 333343333 234489999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=91.58 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=106.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcc----cceEEEEEECCEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~----~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..++-+.+.++|+.++|||.+++.++++.+.. +..+. .++...+..+...+.+.|.+-. ........- ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 34677899999999999999999999987763 22222 2333334445567778887764 222222211 67999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.++||.+++.+|......+...... ...|+++|++|+|+.+. ....+.++.+++.. -...|++.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~ 568 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKT 568 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCC
Confidence 99999999999999888877776555 57999999999998653 23466777776652 33566664
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
... .++|.+|..+.
T Consensus 569 ~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 569 LSS-NELFIKLATMA 582 (625)
T ss_pred CCC-chHHHHHHHhh
Confidence 333 78888887654
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-11 Score=90.84 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=83.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc--CCc--------------c--ccc---Ccccc----eEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL--GEI--------------V--TTI---PTIGF----NVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~--~~~--------------~--~~~---~t~~~----~~~~~~~~~~~~~~~d~~ 69 (181)
.++...+|+-+|.+|||||...|+- +.. . +.. ...++ .+..+++.+..++|.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4566778999999999999999852 110 0 000 12222 345678899999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
||++|..-..+.+..+|.+++|+|+..- .+.....+.+..+. .++||+=++||.|-.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~ 146 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDRE 146 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccc
Confidence 9999999998888999999999999742 33333445555554 589999999999964
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=86.96 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=74.0
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHh
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAA 137 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~ 137 (181)
.++.+.|++|.|-.+...... .-+|.+++|.-+.--+..+....-++++- -++|+||.|....+ ...
T Consensus 142 aG~DvIIVETVGvGQsev~I~---~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDIA---NMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHHh---hhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHH
Confidence 468899999998655444433 45899999988876666777766665543 39999999954332 122
Q ss_pred HHHhhhCCCc----cCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 138 EITDKLGLHS----LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 138 ~~~~~~~~~~----~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
++...+.... ...+..|++.||+.+|+|++++++.+.+..
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 3333333221 223456799999999999999999998754
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=86.94 Aligned_cols=146 Identities=21% Similarity=0.296 Sum_probs=95.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC----cccccCcccceEEEEEECC-EEEEEEEcCCCCCc-----ccccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~-----~~~~~~~~~~~ 85 (181)
.+.||+++|.+|+||||+=..+..+. .....+|+++....+.+-+ ..+++||.+|++.+ .......+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 36799999999999999866666444 2234567777776666544 89999999999743 33456778999
Q ss_pred cEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC--CCcc-CCcceEEEEcc
Q 030193 86 QGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSL-RQRHWYIQSTC 159 (181)
Q Consensus 86 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~S 159 (181)
+++++|||+...+ .+......+...++. .+...+....+|.|+.....-+.+-++.. ...+ +.....++++|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999997542 222223333333332 25678899999999987544333322111 1111 23446788888
Q ss_pred cCCC
Q 030193 160 ATSG 163 (181)
Q Consensus 160 ~~~~ 163 (181)
..+.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 7764
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-11 Score=84.98 Aligned_cols=149 Identities=17% Similarity=0.062 Sum_probs=95.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceE-EEEEECCEEEEEEEcCCCC--------Cccccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV-ETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~d 86 (181)
-+|.++|-|.+||||++..+.+.... ++.-|+=..+ ....+++.++++.|.||-- +.+ ......+-|+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~-qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGK-QVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCcc-EEEEEeeccc
Confidence 38999999999999999999887632 1111111111 2345678899999999931 222 2334457899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC-----------------------------------------------------
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNE----------------------------------------------------- 113 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----------------------------------------------------- 113 (181)
.+++|.|+..|-+...+.+.-.+-+..
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~ 218 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA 218 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcch
Confidence 999999998766554443321111000
Q ss_pred ------CCCC--CCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 114 ------DELR--DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 114 ------~~~~--~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
...+ -+|++.++||+|...- +++.-.+..+ ..+++|+.+++|++++++.+.+.+
T Consensus 219 DdLIdvVegnr~yVp~iyvLNkIdsISi---EELdii~~ip-------havpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 219 DDLIDVVEGNRIYVPCIYVLNKIDSISI---EELDIIYTIP-------HAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhhccCceeeeeeeeecccceeee---eccceeeecc-------ceeecccccccchHHHHHHHhhcc
Confidence 0001 3578888888885433 3333333333 467899999999999999998865
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-11 Score=90.23 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=88.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCcccceEEEEEE--CC--EEEEEEEcCCCCC------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVEY--KN--ISFTVWDVGGQDK------ 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~~~~~--~~--~~~~~~d~~g~~~------ 73 (181)
--.++|+++|+.|+|||||+|.|++...... .++..+....... .+ .+++++||||-.+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4578999999999999999999998743321 2344444444333 23 6889999999211
Q ss_pred ---------------ccc-----ccc-cc-cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 74 ---------------IRP-----LWR-HY-FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 74 ---------------~~~-----~~~-~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|.. .+. .+ =...|++||.+.++ .+++..++-..+..+. ..+.+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 100 011 01 12479999999987 4566666666666665 368899999999988
Q ss_pred CCCCHhHHHhhhCCCccCCcceEEE
Q 030193 132 NAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
...+......... ..+..+++++|
T Consensus 176 T~~El~~~K~~I~-~~i~~~nI~vf 199 (373)
T COG5019 176 TDDELAEFKERIR-EDLEQYNIPVF 199 (373)
T ss_pred CHHHHHHHHHHHH-HHHHHhCCcee
Confidence 7666555554432 22334455555
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-11 Score=88.00 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=97.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC----cccc------cCcccceEEEEE---------ECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IVTT------IPTIGFNVETVE---------YKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~------~~t~~~~~~~~~---------~~~~~~~~~d~~g~~~~~ 75 (181)
..+++++++|+.+||||+|.+++..-. |... .-|.+..+..+. .+...+.++|.|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 446899999999999999999996432 1111 113333333222 245788999999997766
Q ss_pred cccccccccccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhH----HHhhhCCC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAE----ITDKLGLH 146 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~----~~~~~~~~ 146 (181)
.......+-.|+.++|+|+..-..-+..+ -.+-+.+ -...++|+||+|...+. ..++ +++.+...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 65555556789999999996422111111 1222222 24568888999875431 1222 22222222
Q ss_pred ccCCcceEEEEcccCCC----CCHHHHHHHHHHHhh
Q 030193 147 SLRQRHWYIQSTCATSG----EGLYEGLDWLSNNIA 178 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~----~~i~~~~~~i~~~l~ 178 (181)
.+ ..+.|++++|+..| +++.++.+.+...+-
T Consensus 159 ~f-~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 159 GF-DGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred Cc-CCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 22 13478999999999 778888887777654
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=87.91 Aligned_cols=152 Identities=19% Similarity=0.190 Sum_probs=90.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC----Ccc-------------cc-----cCcccceE---EEEEE-----CCEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG----EIV-------------TT-----IPTIGFNV---ETVEY-----KNISFT 64 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~----~~~-------------~~-----~~t~~~~~---~~~~~-----~~~~~~ 64 (181)
.-++-|+|+|+.++|||||+|+|.+. ... +. ..|++..+ ..++. -..+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45789999999999999999999887 221 11 12444433 22322 237899
Q ss_pred EEEcCCCC--------Cccc------c---------------cccccc-cccEEEEEE-ECC----CcccHHHHHHHHHH
Q 030193 65 VWDVGGQD--------KIRP------L---------------WRHYFQ-NTQGLIFVV-DSN----DRDRVVEARDELHR 109 (181)
Q Consensus 65 ~~d~~g~~--------~~~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~ 109 (181)
++|++|.. +-.. - ....+. .++..|+|. |.+ .++.+....+.+.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999921 1111 0 222334 789999988 764 23445666666666
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC--CCCHHHHHHHHH
Q 030193 110 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS--GEGLYEGLDWLS 174 (181)
Q Consensus 110 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i~ 174 (181)
.++. .++|+++|+||.|-.... ..++...+. .+.+++++.+|+.+ ...+..+++.+.
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 6665 589999999999943222 232322221 12234556666654 444555555443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-11 Score=86.07 Aligned_cols=157 Identities=23% Similarity=0.222 Sum_probs=99.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC-------C---cc--cccC-------cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG-------E---IV--TTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~-------~---~~--~~~~-------t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.-.+||+.+|+.+.|||||..++..- . +. +.-| |+......++-.+..+-..|.|||.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 34679999999999999998887531 1 11 1112 3333334455567888899999999998
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHH--HHHHhcCCCCCCC-eEEEEEeCCCCCCCCCHhH-----HHhhhCCCc
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDE--LHRMLNEDELRDA-VLLVFANKQDLPNAMNAAE-----ITDKLGLHS 147 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~--~~~~~~~~~~~~~-piivv~nK~D~~~~~~~~~-----~~~~~~~~~ 147 (181)
........+.|+.|+|+.+++-.- .+..+. +.+. -++ .+++++||+|+++..+..+ ++..+..-.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarq------vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ------VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhh------cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 877766678999999999986321 122222 2222 244 6889999999998554332 233333333
Q ss_pred cCCcceEEEEcccCCC-CC-------HHHHHHHHHHHhh
Q 030193 148 LRQRHWYIQSTCATSG-EG-------LYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~-~~-------i~~~~~~i~~~l~ 178 (181)
+..-+.|++.-|+..- +| +.+|++.+..++.
T Consensus 163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 4445678877776642 22 5666666655543
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=78.82 Aligned_cols=143 Identities=22% Similarity=0.165 Sum_probs=83.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC---Ccc----cc-cCc----------ccceEEEEE----------------------
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG---EIV----TT-IPT----------IGFNVETVE---------------------- 57 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~---~~~----~~-~~t----------~~~~~~~~~---------------------- 57 (181)
+.|.|.|++|||||+|+.+++.. ++. .. ..| .+.....++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 79999999999999999887542 110 00 000 111111111
Q ss_pred ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCC--CCeEEEEEeCCCCCCCCC
Q 030193 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~~~~ 135 (181)
..+..+-+++..|. ....-++.-..+.-++|+|++.-+.. -++..+ ...-++|+||.|+.+..+
T Consensus 94 ~~~~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~~-----------P~K~gP~i~~aDllVInK~DLa~~v~ 159 (202)
T COG0378 94 FPDLDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGEDI-----------PRKGGPGIFKADLLVINKTDLAPYVG 159 (202)
T ss_pred CCcCCEEEEecCcc---eecccCcchhhceEEEEEECCCCCCC-----------cccCCCceeEeeEEEEehHHhHHHhC
Confidence 12246677777772 22222232345589999999753210 010001 125689999999987544
Q ss_pred H--hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 136 A--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
. +...+.... . ..+.+++++|.++|.|++++++++....
T Consensus 160 ~dlevm~~da~~--~-np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKE--V-NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHH--h-CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3 322221111 1 1234799999999999999999998754
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=85.35 Aligned_cols=137 Identities=15% Similarity=0.253 Sum_probs=86.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc--------c--CcccceEEEEEECC----EEEEEEEcCCCCC--------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--------I--PTIGFNVETVEYKN----ISFTVWDVGGQDK-------- 73 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------~--~t~~~~~~~~~~~~----~~~~~~d~~g~~~-------- 73 (181)
-.++++++|++|.|||||||.|+...+... . .|..+......... .++++.||||-.+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999988754422 1 13444444444432 6889999999110
Q ss_pred ----------cc-------cccccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 74 ----------IR-------PLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 74 ----------~~-------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|. ......+. ..|+.+|.+.+. .+++...+-.+++.+. ..+.+|-|+.|.|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 00 00111122 589999999986 4456666666666665 378999999999988765
Q ss_pred CHhHHHhhhCCCccCCcceEEEEc
Q 030193 135 NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+...+..... ..+...++++|..
T Consensus 175 El~~~K~~I~-~~i~~~nI~vf~f 197 (366)
T KOG2655|consen 175 ELNQFKKRIR-QDIEEHNIKVFDF 197 (366)
T ss_pred HHHHHHHHHH-HHHHHcCcceecC
Confidence 5555444332 2233344444433
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-11 Score=96.63 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=80.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC----------------cccceE---------EEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----------------TIGFNV---------ETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------------t~~~~~---------~~~~~~~~~~~~~d~~ 69 (181)
....+++++|+-++|||+|+..|..+..++-.+ ..+..+ ...+.+.+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 567899999999999999999998765432111 011111 1112245789999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
||-.|.......++.+|++++|+|+.+.-.+ +..+.+...++ .+.|+++|+||.|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh----ccCcEEEEEehhHHH
Confidence 9999999999999999999999999754332 22232333333 589999999999963
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.7e-10 Score=79.94 Aligned_cols=159 Identities=23% Similarity=0.291 Sum_probs=102.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc----cCcccceEEEEEECCEEEEEEEcCCCCCcccc---cccccccccEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQNTQGLI 89 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~---~~~~~~~~d~~i 89 (181)
+.+|+++|...+||||+.....++..+.. ..|.....-.+....+.+++||.||+-.+-.. ....++++.+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 47899999999999999998888765421 11222222223335678999999998654332 456778999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCC----HhHHHh----hhCCCccCCcceEEEEcc
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN----AAEITD----KLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~S 159 (181)
||+|+. +.+.+....+...+.+.. .+++.+=+.+.|.|...+.- ...+.+ .+......+-.+.+.-||
T Consensus 107 fvIDaQ--ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 107 FVIDAQ--DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEech--HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999994 445554444444433322 25788899999999865421 111211 222222333445677788
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
-.+ -.+-|+|.+++++|.
T Consensus 185 IyD-HSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKLI 202 (347)
T ss_pred ecc-hHHHHHHHHHHHHHh
Confidence 777 458888888888764
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=80.68 Aligned_cols=57 Identities=28% Similarity=0.294 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 118 DAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 118 ~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
..+-++|+||+|+.+.. ..++....+... ....+++++|+++|+|++++++||.+..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46779999999997532 233333322111 1235799999999999999999998743
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.8e-10 Score=89.38 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=72.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc----cCcccceEEEEEECCEEEEEEEcCCCCCcc-------cc---cccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHY 81 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~---~~~~ 81 (181)
..++|+++|.+|+||||++|++++...... ..|+..........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 456899999999999999999999864321 224443333344567899999999954321 11 1123
Q ss_pred cc--cccEEEEEEECCCcccH-H--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 82 FQ--NTQGLIFVVDSNDRDRV-V--EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ~~--~~d~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+. .+|++|||..+...... + ...+.+...+...- =..+|||.|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 23 47999999887533221 1 22333444444211 146899999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-09 Score=76.01 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=68.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc-c-c-----ccCcc-------c-c-----------------------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI-V-T-----TIPTI-------G-F----------------------------- 51 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~-----~~~t~-------~-~----------------------------- 51 (181)
.-+.++++|+.|+||||+++++.+..+ + . ..|+. . .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 566899999999999999999988642 1 0 01100 0 0
Q ss_pred --------eEEEEE--EC-CEEEEEEEcCCCCC-------------ccccccccccc-ccEEEEEEECCCcccHHHHHHH
Q 030193 52 --------NVETVE--YK-NISFTVWDVGGQDK-------------IRPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDE 106 (181)
Q Consensus 52 --------~~~~~~--~~-~~~~~~~d~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~ 106 (181)
+...++ .. ...++++|+||-.. .+.+...|+++ .+.+++|+|+...-.-+.. ..
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ 183 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LK 183 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HH
Confidence 000111 11 25799999999532 12235566664 5689999998532111111 12
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 107 LHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 107 ~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.+.+.. .+.++++|+||.|..++
T Consensus 184 ia~~ld~---~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDP---QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHH---cCCcEEEEEECCCCCCc
Confidence 3333332 46899999999998764
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=82.36 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=82.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc----ccCcccceEEEEEE------------------------------
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY------------------------------ 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~------------------------------ 58 (181)
.-+.+.-|+++|+...||||||+.|+..+++. ..||++.-..-+.+
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 33678899999999999999999999988763 34555543333221
Q ss_pred --------C---CEEEEEEEcCCCCC-----------cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCC
Q 030193 59 --------K---NISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 59 --------~---~~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (181)
. --.++++||||--. |.....=+...+|.++++||+...+-=......+.... +
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk----G 209 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK----G 209 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh----C
Confidence 0 03589999999322 23333444568999999999975432233333333332 2
Q ss_pred CCCeEEEEEeCCCCCCCCCHhHHHh
Q 030193 117 RDAVLLVFANKQDLPNAMNAAEITD 141 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~~~~~~~~~ 141 (181)
..-.+-+|+||.|.++.+.+..+..
T Consensus 210 ~EdkiRVVLNKADqVdtqqLmRVyG 234 (532)
T KOG1954|consen 210 HEDKIRVVLNKADQVDTQQLMRVYG 234 (532)
T ss_pred CcceeEEEeccccccCHHHHHHHHH
Confidence 4567889999999887655444433
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-09 Score=81.21 Aligned_cols=157 Identities=16% Similarity=0.074 Sum_probs=99.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccc-c----------------CcccceEEE--EE-----------------
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I----------------PTIGFNVET--VE----------------- 57 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~----------------~t~~~~~~~--~~----------------- 57 (181)
....+.+++.|+.++|||||+-+|.-....+. . .+.++.+.- ++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 35678999999999999999999976554321 0 122222211 11
Q ss_pred ----ECCEEEEEEEcCCCCCcccccc--cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 58 ----YKNISFTVWDVGGQDKIRPLWR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ----~~~~~~~~~d~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
-.+--+.+.|+.||+.|....- ..-+..|..++++.+++-. +...+.-..+.. ....|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~---a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIAL---AMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhh---hhcCCEEEEEEecccC
Confidence 1234578999999999977643 4446799999999997532 333222222221 1479999999999998
Q ss_pred CCCCHhH----HHhhhC---C-----------------CccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 132 NAMNAAE----ITDKLG---L-----------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 132 ~~~~~~~----~~~~~~---~-----------------~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+....+. +...+. . -.....-.|+|.+|+.+|+|++-+.+.+..
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 7543222 222111 0 001112478999999999999876665543
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-10 Score=76.28 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=62.8
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
++..+.++.+++|++++|+|+.++..... ..+...+.. .++|+++|+||+|+.+.....++.. + ....+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~-~----~~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKS-I----KESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHH-H----HHhCCC
Confidence 34556777788999999999976532211 223333322 3689999999999864322222211 1 111234
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+++.+|++++.|++++++.+.+.+.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 6889999999999999999988754
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-10 Score=82.68 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=95.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccceEEEEEE-CCEEEEEEEcCCC---------CCcccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEY-KNISFTVWDVGGQ---------DKIRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~---------~~~~~~~~~~ 81 (181)
....-|.++|..|+|||||+++|++.... .-..|.+........ .+..+-+.||-|- ..|++.....
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 44567999999999999999999965432 123344444434433 3567888999982 2344444444
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
..+|+++=|.|+++|.-- .........++....+..| ++=|=||.|...... ..++.+ .+.
T Consensus 256 -aeadlllHvvDiShP~ae-~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e~E~n~--~v~ 320 (410)
T KOG0410|consen 256 -AEADLLLHVVDISHPNAE-EQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------EEEKNL--DVG 320 (410)
T ss_pred -hhcceEEEEeecCCccHH-HHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------ccccCC--ccc
Confidence 569999999999988643 3333333444443333333 455667777543211 111111 346
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+|+.+|.|++++.+.+-.++..
T Consensus 321 isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccCccHHHHHHHHHHHhhh
Confidence 8999999999999998877653
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=82.93 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=63.1
Q ss_pred cccccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
....+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+.+....+.+...+ +..+++++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEE
Confidence 334568999999999998765 333445554433 22 479999999999997543333333322 23455788
Q ss_pred EcccCCCCCHHHHHHHHHHH
Q 030193 157 STCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~ 176 (181)
.+|++++.|++++++.+...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999988653
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=74.83 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=38.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g 70 (181)
...++++++|.||+|||||+|++.+...... .|.+......+.. +..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 4458999999999999999999999775433 3322122222222 24689999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=82.46 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECC-----------------EEEEEEEcCCCCCc---
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKI--- 74 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~--- 74 (181)
++|+++|.||+|||||.|++++.... .+.| |.+.....+...+ ..+++.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987732 2222 4455444444333 35999999994221
Q ss_pred -cc---ccccccccccEEEEEEECC
Q 030193 75 -RP---LWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 75 -~~---~~~~~~~~~d~~i~v~d~~ 95 (181)
.. ..-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 1223357899999999984
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=77.15 Aligned_cols=98 Identities=18% Similarity=0.080 Sum_probs=62.7
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhh---CCCccC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKL---GLHSLR 149 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~---~~~~~~ 149 (181)
++..+..+++++|++++|+|+.++.. .....+.. . ..+.|+++|+||+|+.+..... ...... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--~~~~~l~~---~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--SLIPRLRL---F--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--ccchhHHH---h--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 57778889999999999999976531 11111111 1 1468999999999997543322 221111 000000
Q ss_pred CcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
-...+++++||+++.|++++++.+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 00125789999999999999999988653
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-09 Score=80.60 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=52.1
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-----------------EEEEEEEcCCCCCc----c
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKI----R 75 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~----~ 75 (181)
|+++|.||+|||||.|++++.... .. ..|.+.....+...+ ..++++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999997753 22 235455554444443 25999999994221 1
Q ss_pred c---ccccccccccEEEEEEECC
Q 030193 76 P---LWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 ~---~~~~~~~~~d~~i~v~d~~ 95 (181)
. ..-..++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1223346899999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=76.71 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=55.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEE------------------CCEEEEEEEcCCC----
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY------------------KNISFTVWDVGGQ---- 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~------------------~~~~~~~~d~~g~---- 71 (181)
.++++|+|-||+|||||.|+++..... .+.| |++.+...+.. -...++++|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999887632 3333 55544433222 1257899999982
Q ss_pred ---CCcccccccccccccEEEEEEECC
Q 030193 72 ---DKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 72 ---~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+..-+..-.-++.+|+++-|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 233333444568899999999975
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=71.89 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=37.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccce--EEEEEECCEEEEEEEcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g 70 (181)
..++|+++|.+|+|||||+|++.+.......++.+.. ...+.. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 4688999999999999999999987754333322211 122222 23478999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-09 Score=79.01 Aligned_cols=150 Identities=23% Similarity=0.236 Sum_probs=95.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc-----------------cCc-------ccceE--EEEEE-----------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------------IPT-------IGFNV--ETVEY----------- 58 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~t-------~~~~~--~~~~~----------- 58 (181)
-.++++++|...+|||||+--|..++.... ..| .+++- .-+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 356999999999999999999977654311 001 11110 00111
Q ss_pred -CCEEEEEEEcCCCCCccccccccccc--ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 59 -KNISFTVWDVGGQDKIRPLWRHYFQN--TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 59 -~~~~~~~~d~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..--++++|.+||.+|.....+.+.. .|..++|+.+..-..+.. ++.+--... -++|..++.+|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 12347899999999998887666654 689999999975443322 122222222 3799999999999998654
Q ss_pred HhHHHh----hhCCC---------------------ccCCcceEEEEcccCCCCCHHHHH
Q 030193 136 AAEITD----KLGLH---------------------SLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 136 ~~~~~~----~~~~~---------------------~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
.+...+ .+... ...+.-.|+|.+|+.+|+|++-+-
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 333222 22111 111235789999999999987554
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-09 Score=79.13 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=95.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc--ccc----CcccceEEEEEECCEEEEEEEcCCC----------CCccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI----PTIGFNVETVEYKNISFTVWDVGGQ----------DKIRP 76 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~----~t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~ 76 (181)
++++++.+.+.|.+|+|||||+|.++..... ... .|..++.+.+ +-.+.+.|.||. .++..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhH
Confidence 3578899999999999999999999887643 122 2333333333 457888999992 22333
Q ss_pred ccccccccc---cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhC--C
Q 030193 77 LWRHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLG--L 145 (181)
Q Consensus 77 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~~~~~~~~~--~ 145 (181)
....|+.+- --+++.+|++. +++..+....+++.+ .++|..+|.||||...... ...+...+. .
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 444444332 24555666643 345555556666666 5799999999999865321 111111010 0
Q ss_pred CccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 146 ~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+.......|++-+|+.++.|+++++-.+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 111122345566999999999988766554
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-09 Score=70.05 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=37.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
+++++|.+|+|||||+|++.+...... .+..+.....+...+ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998876432 222222233344433 6899999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-09 Score=84.65 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=79.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCC------------cccccC---cccce----EEEEEECCEEEEEEEcCCCCCc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVTTIP---TIGFN----VETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~~~---t~~~~----~~~~~~~~~~~~~~d~~g~~~~ 74 (181)
.+...+++++.+.++|||||+..|+.-. |.+..+ +.++. ......+++.++++|+|||-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3567789999999999999999996422 112111 22222 2223347899999999999999
Q ss_pred ccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
........+-+|++++++|+.. .+++.-+++.|.+ +..+++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence 9999999899999999999964 3344444444433 567899999999
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-09 Score=78.31 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=59.6
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEccc
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
..++|.+++|+|+.++.......+.|...+.. .++|+++|+||+|+.+.. ..+++... ++..+++++++|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEEeC
Confidence 48899999999998776655554444433433 478999999999996321 11122222 2223457899999
Q ss_pred CCCCCHHHHHHHHHH
Q 030193 161 TSGEGLYEGLDWLSN 175 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~ 175 (181)
+++.|++++++.+..
T Consensus 150 ~~g~gi~~L~~~l~g 164 (298)
T PRK00098 150 KEGEGLDELKPLLAG 164 (298)
T ss_pred CCCccHHHHHhhccC
Confidence 999999999987753
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=72.61 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=74.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc---------c-cCcccceEEE--EEECC--EEEEEEEcCCCCCc-------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT---------T-IPTIGFNVET--VEYKN--ISFTVWDVGGQDKI------- 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------~-~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~------- 74 (181)
=.++|+|+|.+|.||||++|.+..-...+ . ..|+.+.... +..++ .+++++||||-.+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 37899999999999999999997654321 1 1133333322 33344 57889999992111
Q ss_pred -----------c--------cccccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 75 -----------R--------PLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 75 -----------~--------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
. ..+...+. ..+.++|.+.++ .+++..++-.+++-+.+ -+.++-|+.|+|...-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence 0 01111111 367888888886 34555555445444442 4788999999997665
Q ss_pred CCHhHHHh
Q 030193 134 MNAAEITD 141 (181)
Q Consensus 134 ~~~~~~~~ 141 (181)
++-.++++
T Consensus 200 eEr~~Fkq 207 (336)
T KOG1547|consen 200 EERSAFKQ 207 (336)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=77.84 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=64.1
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
..++|.+++|+++....++..+..|+... .. .++|+++|+||+|+.+....+...... ..++..+++++++|++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~--~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQL--DIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHH--HHHHhCCCeEEEEeCC
Confidence 35699999999998777888888876543 22 478999999999997643222221111 1123345689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030193 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~ 176 (181)
++.|++++++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988764
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=76.25 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=62.9
Q ss_pred ccccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...+.++|.+++|+|+.++. ++....+|+..... .++|+++|+||+|+.+.......... +...+++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~-----~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVE-----ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHH-----HHhCCCeEEE
Confidence 34568899999999998887 77777776554432 47899999999999754211111111 1123458899
Q ss_pred cccCCCCCHHHHHHHHHH
Q 030193 158 TCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~ 175 (181)
+|++++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999987764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=74.87 Aligned_cols=139 Identities=22% Similarity=0.242 Sum_probs=90.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC-------C---cc--cccC-----cccceEEEEEE--CCEEEEEEEcCCCCCcccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG-------E---IV--TTIP-----TIGFNVETVEY--KNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~-------~---~~--~~~~-----t~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~ 77 (181)
.+||+-+|+...|||||..++..- . +. +..| .+.++...+++ .....--.|.|||.+|-..
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN 133 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN 133 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence 568999999999999998887531 1 11 1111 22233344444 4566777899999999888
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHH--HHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-----HHhhhCCCccCC
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDEL--HRMLNEDELRDAVLLVFANKQDLPNAMNAAE-----ITDKLGLHSLRQ 150 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~--~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-----~~~~~~~~~~~~ 150 (181)
..-...+.|+.|+|+.+++-. +.+.++.+ .+.+. -..+++++||.|++++.+..+ ++..+..-.+..
T Consensus 134 MItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVG-----V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 134 MITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVG-----VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred hhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcC-----CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 777778899999999998632 23333332 23222 256899999999996543322 233333444555
Q ss_pred cceEEEEcccC
Q 030193 151 RHWYIQSTCAT 161 (181)
Q Consensus 151 ~~~~~~~~S~~ 161 (181)
-+.|++--||.
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 67788877754
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-09 Score=79.16 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=101.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC------cccc-------------------eEEE----------EE--
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP------TIGF-------------------NVET----------VE-- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------t~~~-------------------~~~~----------~~-- 57 (181)
+..++|+-+|+.-.||||++.++.+-....-.. |+.. .+.. .+
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 678999999999999999999996632110000 0000 0000 00
Q ss_pred -----ECC-EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 58 -----YKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 -----~~~-~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+- ..+.+.|.|||+-..+.+-....-.|++++++..++.+...+..+.+...--- .=..++++.||+|+.
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli 192 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLI 192 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhh
Confidence 011 35789999999877666555545678899999987655444444444332111 125789999999998
Q ss_pred CCCCHhH----HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 132 NAMNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 132 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.+....+ +.+...- -.-.+.|++++||.-+.|++-+.++|++++.
T Consensus 193 ~e~~A~eq~e~I~kFi~~--t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQG--TVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hHHHHHHHHHHHHHHHhc--cccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 7543222 2222111 1224678999999999999999999998864
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=80.50 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=90.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
.+-++|+||||+||||||..|+....-.....+.-.++-+.++..++++++.|.+ ...+. ...+-+|++++++|.+
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlLlIdgn- 144 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLLLIDGN- 144 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEEEeccc-
Confidence 4567899999999999999998876544444444445667778899999999932 33333 3346799999999995
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCC--cceEEEEcccC
Q 030193 97 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQ--RHWYIQSTCAT 161 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~S~~ 161 (181)
-+|+-....++.++..+.. +.++-|+|..|+.... .+....++++.++-.. ++..+|..|-.
T Consensus 145 -fGfEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 145 -FGFEMETMEFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred -cCceehHHHHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 3444444456666665432 4478899999997643 4445555444332211 34455556643
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=68.71 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=59.4
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.+..+|++++|+|+.++.. .....+.+.+... ..++|+++|+||+|+.++....++...+... ..+.++.+|+
T Consensus 5 ~l~~aD~il~VvD~~~p~~--~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMG--TRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCcc--ccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 3478999999999987532 1123333333322 2358999999999997543333333333221 1223578999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 030193 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l 177 (181)
+++.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999998754
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-08 Score=80.74 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=107.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcc--cceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
..|++|+|..++|||+|+.+++...+.. ..|.- .-.++.++...+.+.+.|.+|+..- .|....|.+|+||.
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf~ 104 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVFS 104 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEEE
Confidence 5799999999999999999999888763 33322 2234455667788889998885333 24467899999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+.+..+|+.+...............+|.++++++.=.... ...+.-...+... .....+|++++..|.++...|
T Consensus 105 ~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~---~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 105 VEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQ---MKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred eccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHh---cCccceeecchhhhhhHHHHH
Confidence 9999999988877777665444456888999887543211 1111111111111 112358899999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
..+..++.
T Consensus 182 ~~~~~k~i 189 (749)
T KOG0705|consen 182 QEVAQKIV 189 (749)
T ss_pred HHHHHHHH
Confidence 99888764
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.3e-09 Score=80.30 Aligned_cols=98 Identities=23% Similarity=0.267 Sum_probs=64.6
Q ss_pred CCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccC
Q 030193 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLR 149 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~ 149 (181)
+++|......+...++++++|+|+.+... .....+.+.+ .+.|+++|+||+|+.... ..+++..... ..++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 55788888888889999999999976431 1222333333 257999999999997543 2222222110 0111
Q ss_pred Ccce---EEEEcccCCCCCHHHHHHHHHHH
Q 030193 150 QRHW---YIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 150 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
..++ .++.+||+++.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1222 37889999999999999999764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=67.98 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=53.9
Q ss_pred cEEEEEEECCCcccHHHHHHHHH-HHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
|++++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....++...+... ...+++.+|++++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 68999999987654332 2232 23332 468999999999996543222322222111 12357889999999
Q ss_pred CHHHHHHHHHHH
Q 030193 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~i~~~~~~i~~~ 176 (181)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=75.61 Aligned_cols=118 Identities=15% Similarity=0.327 Sum_probs=75.2
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccc------------------------------------
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGF------------------------------------ 51 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~------------------------------------ 51 (181)
.+...++..||++.|..++||||+||+++.+... ...|++.+
T Consensus 102 ~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~ 181 (749)
T KOG0448|consen 102 DEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALK 181 (749)
T ss_pred HHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcC
Confidence 3445578999999999999999999999765421 11111100
Q ss_pred --------eEEEEEECC-------EEEEEEEcCCCC---CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcC
Q 030193 52 --------NVETVEYKN-------ISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113 (181)
Q Consensus 52 --------~~~~~~~~~-------~~~~~~d~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (181)
...++-+++ -.+.++|.||-+ ....-......++|+++||.++.+ .+......+.....+
T Consensus 182 ~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 182 PDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE 259 (749)
T ss_pred cccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc
Confidence 000111111 257899999943 333345677789999999999954 455555555554443
Q ss_pred CCCCCCeEEEEEeCCCCCC
Q 030193 114 DELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 114 ~~~~~~piivv~nK~D~~~ 132 (181)
.++.+.++-||.|...
T Consensus 260 ---~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 260 ---EKPNIFILNNKWDASA 275 (749)
T ss_pred ---cCCcEEEEechhhhhc
Confidence 2566777778889764
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=68.88 Aligned_cols=84 Identities=32% Similarity=0.545 Sum_probs=61.4
Q ss_pred cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCCC
Q 030193 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~ 117 (181)
|.++..+++....++|+.+|++|+.+-+..|...+.+.-++|||+..++.. .++.....+..+-...-+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 456666777888899999999999999999999999999999999876421 2222222222222222224
Q ss_pred CCeEEEEEeCCCCC
Q 030193 118 DAVLLVFANKQDLP 131 (181)
Q Consensus 118 ~~piivv~nK~D~~ 131 (181)
.+.+|+++||-|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 68999999999985
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.9e-08 Score=66.22 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=39.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEE-EEEECCEEEEEEEcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g 70 (181)
....+++++|.+|+||||++|++.+.......++.+.... .+...+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 3567899999999999999999998765444444443321 1111234799999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-08 Score=70.04 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc----------cccCcccceEEEEEECCEEEEEEEcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~d~~g 70 (181)
...+++++|.+|+|||||+|+|.+.... +..|.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 22232222223333332 579999998
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-08 Score=73.19 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=39.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCccc--ceEEEEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~d~~g~ 71 (181)
...++++++|.||+|||||+|++.+.......+..+ .....+.. +..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence 456899999999999999999999987543322222 11222332 245889999995
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6e-08 Score=73.57 Aligned_cols=149 Identities=20% Similarity=0.170 Sum_probs=90.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-------------------cCcccceEEEEEE-------------------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-------------------IPTIGFNVETVEY------------------- 58 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~t~~~~~~~~~~------------------- 58 (181)
.++|+++|...+|||||+-.|.+.+.... ..+.+.++--++.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 46999999999999999988876443210 0111111111111
Q ss_pred ----CCEEEEEEEcCCCCCcccccc--cccccccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 59 ----KNISFTVWDVGGQDKIRPLWR--HYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 59 ----~~~~~~~~d~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.---++++|.+||+.|....- ..-+-.|.-++++-++- ..-... +.+--.+. -.+|+.+|.||+|++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa--GIiGmTKEHLgLALa----L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA--GIIGMTKEHLGLALA----LHVPVFVVVTKIDMC 286 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc--cceeccHHhhhhhhh----hcCcEEEEEEeeccC
Confidence 113478999999999987643 33345788888887742 111111 11211122 379999999999998
Q ss_pred CCCCHhHHH----hhhCCCcc---------------------CCcceEEEEcccCCCCCHHHHHH
Q 030193 132 NAMNAAEIT----DKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 132 ~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
....+++-. +.+..+.. .++-+|+|.+|..+|.|++-+..
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 865444432 22222111 12457899999999999876544
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-09 Score=80.54 Aligned_cols=125 Identities=20% Similarity=0.145 Sum_probs=87.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--------cccc---------cC----cccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------IVTT---------IP----TIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--------~~~~---------~~----t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
.+-.+|+++.+..+||||...+++.-. ..+. .. |....-..+++++++++++|||||-+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 456689999999999999999986311 1110 01 22223345788999999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG 144 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~ 144 (181)
|+-...+.++-.|+++.|||++..-. .....+|..-- ..++|-+.++||+|..... ..+.++..++
T Consensus 115 f~leverclrvldgavav~dasagve-~qtltvwrqad----k~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVE-AQTLTVWRQAD----KFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcc-cceeeeehhcc----ccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 99999999999999999999974221 12223443322 2589999999999986532 3444444444
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-08 Score=72.58 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=38.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
..++++++|.||+|||||+|++.+...... .|.+......+... -.+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 468999999999999999999998764422 23221222233332 35799999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-08 Score=72.13 Aligned_cols=118 Identities=17% Similarity=0.258 Sum_probs=80.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccC-----cccceEEEEEEC--C--EEEEEEEcCCC-------CCccc----
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYK--N--ISFTVWDVGGQ-------DKIRP---- 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----t~~~~~~~~~~~--~--~~~~~~d~~g~-------~~~~~---- 76 (181)
.++|+.+|..|.||||||+.|++..+.+... +.......++.. + .++++.||.|- +.|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 6899999999999999999999988764332 333333333332 2 57899999982 11111
Q ss_pred ---cccccc---------------ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030193 77 ---LWRHYF---------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138 (181)
Q Consensus 77 ---~~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~ 138 (181)
....|+ ...++.+|.+.++ .+++...+....+.+. .++.||-|+.|.|.....++..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~eL~~ 196 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTISKEELKR 196 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHHHHHH
Confidence 111111 2468889999887 5677777777777666 3688999999999876655444
Q ss_pred H
Q 030193 139 I 139 (181)
Q Consensus 139 ~ 139 (181)
+
T Consensus 197 F 197 (406)
T KOG3859|consen 197 F 197 (406)
T ss_pred H
Confidence 3
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.6e-08 Score=67.42 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=39.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
...++++++|.+|+|||||+|++.+..+... .+........+... ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4557999999999999999999998776432 22222222223332 56889999993
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-08 Score=76.36 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=100.4
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCC-----------------------c-----c------cccCcccceEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE-----------------------I-----V------TTIPTIGFNVETVEY 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~-----------------------~-----~------~~~~t~~~~~~~~~~ 58 (181)
++...+++.++|...+||||+...+.... + . ....|.+.....++-
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 34678999999999999999987774310 0 0 011244455556677
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC---cccHHHH-----HHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRVVEA-----RDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~-----~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
...+++++|+|||..|.........++|+.++|+.+-. ...|+.- ...+.+.. .-...|+++||+|.
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-----gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-----GVKHLIVLINKMDD 229 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-----ccceEEEEEEeccC
Confidence 78899999999999998887777788999999998832 1122211 11222222 23578999999998
Q ss_pred CCCC----CHhHHHh----hhCCCccC-CcceEEEEcccCCCCCHHHHHH
Q 030193 131 PNAM----NAAEITD----KLGLHSLR-QRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 131 ~~~~----~~~~~~~----~~~~~~~~-~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+.-. ..++... .+....+. .....++++|..+|.++++..+
T Consensus 230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 6421 2222222 22211222 2356799999999999987654
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-08 Score=73.66 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=39.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc--ccC--cccceEEEEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
...++++|+|-||+||||+||+|.+..... ..| |.+......+ ..+.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCc
Confidence 345889999999999999999999988653 344 3333333332 33899999994
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-08 Score=69.90 Aligned_cols=132 Identities=26% Similarity=0.401 Sum_probs=84.3
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~ 116 (181)
||+++..+.++.....+++.|++|+...+..|.+.+.+.-.++|++.++..+ .++.....+.-++.-.-.
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 5677777778888899999999999888899999999888888877765432 222222233333333333
Q ss_pred CCCeEEEEEeCCCCCCCCC-----------------HhHHHhhhCCCcc-------CCcceEEEEcccCCCCCHHHHHHH
Q 030193 117 RDAVLLVFANKQDLPNAMN-----------------AAEITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~~~-----------------~~~~~~~~~~~~~-------~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
.+.++|+++||.|+.++.. ..+..+++-+..+ .+....- .++|.+-+|+.-+|..
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SH-fTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSH-FTCATDTENIRFVFAA 343 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeee-eeecccchhHHHHHHH
Confidence 5789999999999875311 1111111211111 1111222 3678888999999988
Q ss_pred HHHHhhh
Q 030193 173 LSNNIAT 179 (181)
Q Consensus 173 i~~~l~~ 179 (181)
+.+.+.+
T Consensus 344 VkDtiLq 350 (359)
T KOG0085|consen 344 VKDTILQ 350 (359)
T ss_pred HHHHHHH
Confidence 8776653
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=75.33 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=80.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-----cc---cccC-------------cccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----IV---TTIP-------------TIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-----~~---~~~~-------------t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
.+..+|++.-+-.+||||+.++.+... .. +... |.......+.+.+++++++|||||-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 456789999999999999999986422 11 1111 22222345667899999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|.-...+.++-.|+.++|+|+...- ......+|....+ .++|-+-++||+|--
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 9999999999999999999985321 1233344544433 479999999999953
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=65.43 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=57.8
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
....+.++|++++|+|+.++..... ..+...+ .+.|+++|+||+|+.++....++...+.. ....++.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~vi~ 80 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEKVLF 80 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCeEEE
Confidence 3455688999999999976543211 1122222 25789999999999644222222222111 1235789
Q ss_pred cccCCCCCHHHHHHHHHHHh
Q 030193 158 TCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l 177 (181)
+|++++.|++++.+.+...+
T Consensus 81 iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EECCCcccHHHHHHHHHHHH
Confidence 99999999999999998865
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.1e-07 Score=65.80 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=54.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC--Cccc----ccCcccceEEEEEE---CCEEEEEEEcCCCCCccc------cccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG--EIVT----TIPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~------~~~~ 80 (181)
...-|+|+|++++|||+|+|++++. .+.. ...|.++-...... .+..+.++||+|-..... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3456789999999999999999998 5541 12355554443333 368899999999543322 1122
Q ss_pred cccc--ccEEEEEEECCCcc
Q 030193 81 YFQN--TQGLIFVVDSNDRD 98 (181)
Q Consensus 81 ~~~~--~d~~i~v~d~~~~~ 98 (181)
.+.. ++++||..+....+
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 2233 88888888876443
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=63.30 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=38.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g 70 (181)
....+++++|.+|+|||||+|++.+.... +..+ |.......+ +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCC
Confidence 46788999999999999999999987642 2222 333333322 25689999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.6e-07 Score=70.16 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=55.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc-c-cccC--cccceEEEEEECC-----------------EEEEEEEcCCCCC---
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~--- 73 (181)
.+++++|.|++|||||.|.+++... . .+.| |.+.+...+...+ ..+++.|.||--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998765 3 2222 4444444443332 4789999999422
Q ss_pred ----cccccccccccccEEEEEEECC
Q 030193 74 ----IRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
.-...-..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223444568899999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=69.77 Aligned_cols=90 Identities=12% Similarity=0.071 Sum_probs=60.6
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEE
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
.....+..+|++++|+|+..+.+-. ...+.+.+. +.|+++|+||+|+.+.....++...+.. .+.+++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~--~~~i~~~l~-----~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi 81 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSR--NPMIDEIRG-----NKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKAL 81 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCC--ChhHHHHHC-----CCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeEE
Confidence 3455668899999999997653321 123334332 5799999999999754323333322211 124678
Q ss_pred EcccCCCCCHHHHHHHHHHHhh
Q 030193 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.+|++++.|++++.+.+.+.+.
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 8999999999999999887654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-06 Score=67.68 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=83.3
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCc-cc----------------ccC----------------------------
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI-VT----------------TIP---------------------------- 47 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~----------------~~~---------------------------- 47 (181)
+.++-++|+|+|+..+||||.+..+..... +. ..|
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 346788999999999999999998865321 00 000
Q ss_pred ------------cccceEEEEE--ECC-EEEEEEEcCCC-------------CCcccccccccccccEEEEEEECCCccc
Q 030193 48 ------------TIGFNVETVE--YKN-ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDR 99 (181)
Q Consensus 48 ------------t~~~~~~~~~--~~~-~~~~~~d~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s 99 (181)
|.......+. +.+ -++.+.|.||- +....+..+|+.+.+.+|+|+--...
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV-- 461 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV-- 461 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc--
Confidence 1111112222 233 47899999992 22334567888999999999854322
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcc
Q 030193 100 VVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSL 148 (181)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~ 148 (181)
...+......+.+....+...|+|+||.|+.+. ..+..+++.+.-+.+
T Consensus 462 -DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLF 511 (980)
T KOG0447|consen 462 -DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLF 511 (980)
T ss_pred -chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCcc
Confidence 122222223333333346789999999999865 367778877765544
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-07 Score=62.58 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=49.1
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
..+..+|++++|+|+.++.+.. ...+.+++.... .++|+++|+||+|+.++....++...+ +..+.+++++|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~iS 78 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFFS 78 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEEE
Confidence 3457899999999998765432 223333333221 468999999999996543333333322 22234688999
Q ss_pred cCCCCC
Q 030193 160 ATSGEG 165 (181)
Q Consensus 160 ~~~~~~ 165 (181)
++++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 998764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.7e-07 Score=78.21 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=64.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-----cCcccceEE-EEE-ECCEEEEEEEcCCCC--------Cccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVE-TVE-YKNISFTVWDVGGQD--------KIRPLWRHYF 82 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~-~~~-~~~~~~~~~d~~g~~--------~~~~~~~~~~ 82 (181)
+=.+|+|++|+||||++..- +-.++-. ..+.+..-+ .++ +-.-+..++||+|.. .....|..++
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 44789999999999999887 3333211 111111100 111 112356799999921 2223344333
Q ss_pred ---------ccccEEEEEEECCCc-----ccHH----HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 83 ---------QNTQGLIFVVDSNDR-----DRVV----EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 ---------~~~d~~i~v~d~~~~-----~s~~----~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..|++|+++|+.+. +... .+...+.++ .+...-..||.+++||+|+..
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el-~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL-REQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEecchhhc
Confidence 358999999998642 1111 112222222 223335899999999999875
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-07 Score=67.38 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=57.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEEC-----------------CEEEEEEEcCCCC--
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQD-- 72 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~~~d~~g~~-- 72 (181)
.+..+++|+|-|++|||||.|.+++.... .+.| |++.+..++... ...++++|++|--
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36789999999999999999999987654 3344 666666555442 2568999999832
Q ss_pred -----CcccccccccccccEEEEEEECC
Q 030193 73 -----KIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 73 -----~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
..-+..-..++.+|+++=|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 22222334457899999888864
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.2e-07 Score=69.85 Aligned_cols=97 Identities=20% Similarity=0.162 Sum_probs=57.9
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCc
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQR 151 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~ 151 (181)
.|.............+++|+|+.+.. ......+.+.. .+.|+++|+||+|+..... .+++.... ....+..
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l-~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWL-RQEAKEL 129 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHH-HHHHHhc
Confidence 45555554433345999999997643 11222333332 2578999999999975322 22221110 0111111
Q ss_pred ce---EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 152 HW---YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 152 ~~---~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
++ .++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 22 478899999999999999997753
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=60.00 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=36.8
Q ss_pred CEEEEEEEcCCCCCcccccc--------cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWR--------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
.....++|++|-..-..... ...-..+.+++++|+.+..........+.+.+.. .-++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence 35678899999543222211 1223588999999986433222112233333332 23789999995
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-07 Score=68.97 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=34.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc--cc--------C-cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT--TI--------P-TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~--~~--------~-t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.++++|.+|+|||||+|+|++..... .. + |+......+... ..++||||-..+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 37899999999999999999875321 11 1 222222233222 2489999965444
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.1e-07 Score=66.41 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=59.7
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
....+..+|++++|+|+..+.+... ..+...+. +.|+++|+||+|+.+....+++...+. ..+.+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEE
Confidence 4455688999999999976543221 23334332 579999999999965422223322221 11346788
Q ss_pred cccCCCCCHHHHHHHHHHHhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+|++++.|++++.+.+.+.+.
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EECCCcccHHHHHHHHHHHHH
Confidence 999999999999998887654
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=67.16 Aligned_cols=55 Identities=16% Similarity=0.342 Sum_probs=37.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc-------ccccCcccceEEEEEECCEEEEEEEcCCCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 72 (181)
..+++++|.+|+|||||+|++++... .+..|.+......+.. +-.+.++||||-.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~ 215 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGII 215 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCC
Confidence 46999999999999999999998542 1233322233333433 1235799999943
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.9e-07 Score=61.62 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
-.++++|++|||||||+|+|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678899999999999999999874
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-06 Score=66.49 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=36.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc-------ccccCcccceEEEEEECCEEEEEEEcCCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
...++.++|.+|+|||||+|+|.+... .+..|.+......+...+ ...++||||-
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 356899999999999999999986431 123343223333333322 2479999994
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.4e-06 Score=64.55 Aligned_cols=84 Identities=23% Similarity=0.202 Sum_probs=55.3
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
..++|.+++|+++..+-....++.++... .. .+++.++|+||+|+.+... +........ ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCCcEEEEECC
Confidence 47899999999996433333344433332 22 4678899999999975411 111111111 235678999999
Q ss_pred CCCCHHHHHHHHH
Q 030193 162 SGEGLYEGLDWLS 174 (181)
Q Consensus 162 ~~~~i~~~~~~i~ 174 (181)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8e-06 Score=62.08 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=74.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC------c--ccccC--------------cccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIP--------------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~------~--~~~~~--------------t~~~~~~~~----------------- 56 (181)
..--|+++|++|+||||++..+...- . .+..+ ..+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999998885421 0 00000 011111111
Q ss_pred EECCEEEEEEEcCCCCCcccc----ccc--------ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030193 57 EYKNISFTVWDVGGQDKIRPL----WRH--------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~----~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||||....... ... .-...+..++|+|++.. .....+ ...+... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence 124578999999996432211 111 11347889999999742 222222 2222211 1355799
Q ss_pred EeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 125 ANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 125 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+||.|....-. .-.+....+. |+..++ +|++++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~--------Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGI--------PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCC--------CEEEEe--CCCChhhCc
Confidence 99999654432 2233333333 444444 777776653
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-06 Score=67.16 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.++|+|++|+|||||+|+|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999765
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-06 Score=62.13 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=34.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc--c--------cC-cccceEEEEEECCEEEEEEEcCCCCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT--T--------IP-TIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~--~--------~~-t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
..++++|++|+|||||+|++.+..... . .+ |+......+ .+ ..++||||-..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 478899999999999999999764321 1 11 233333333 22 37999999643
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.2e-06 Score=62.34 Aligned_cols=139 Identities=23% Similarity=0.269 Sum_probs=74.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC------Cc--cccc---C-----------cccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTI---P-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~---~-----------t~~~~~~~~----------------- 56 (181)
+...|+++|++|+||||++..+... .. .... . ..+..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3567899999999999987777531 11 0000 0 011111100
Q ss_pred EECCEEEEEEEcCCCCCcccc----ccccc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 57 EYKNISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
...++.+.++||+|....... ...+. .+.|..++|+|+...+.-......+...+ .+--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence 113467999999996542211 11111 25788999999964322111122222211 245789999998
Q ss_pred CCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 131 PNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 131 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
...-... .+....+. |+..++ +|.+++++..
T Consensus 292 ~~~~G~~ls~~~~~~~--------Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAYVIGK--------PILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHHHHCc--------CEEEEe--CCCChhhccc
Confidence 6543322 23333333 444444 7888877653
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=58.38 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=52.9
Q ss_pred CCEEEEEEEcCCCCCccccc----c--------cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030193 59 KNISFTVWDVGGQDKIRPLW----R--------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~----~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
.++.+.++||||........ . ..-..+|..++|+|+... ..... ....+.+.. .+.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 45789999999975432221 1 111248999999999642 22222 222222211 24689999
Q ss_pred CCCCCCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 127 KQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 127 K~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|.|....-... .+....+. |+..++ +|.+++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~~~--------Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELKL--------PIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHHCc--------CEEEEe--CCCChHhCc
Confidence 99986544322 33333333 444444 677776654
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=62.55 Aligned_cols=110 Identities=20% Similarity=0.146 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCChHHHHhhhh------cCCcc--cc---cC-----------cccceEEEEE-----------------
Q 030193 17 EMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IP-----------TIGFNVETVE----------------- 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~------~~~~~--~~---~~-----------t~~~~~~~~~----------------- 57 (181)
.--|+++|++||||||++..|. +.... +. .+ ..+..+....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 3468899999999999999885 22211 11 10 1112222111
Q ss_pred ECCEEEEEEEcCCCCCcccc----cccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 58 YKNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
..++.+.|+||+|....... ...+ ....+-+++|+|+.-.+.-....+.|.+. -.+.-+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 02578999999995433211 1111 13478899999986432222222223221 23678999999986
Q ss_pred CC
Q 030193 132 NA 133 (181)
Q Consensus 132 ~~ 133 (181)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 43
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-05 Score=53.16 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=36.3
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
++.+.++|++|..... . .++..+|.+++|..+.--+.+.-..- ..+ ..--++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~--~-~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE--V-DIASMADTTVVVMAPGAGDDIQAIKA---GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh--h-hHHHhCCEEEEEECCCchhHHHHhhh---hHh------hhcCEEEEeCCC
Confidence 5789999999864222 2 36688999999988862222211111 111 234489999987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.8e-05 Score=50.77 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...++|+|-|+||+||||++.++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3468999999999999999988864
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.6e-06 Score=65.70 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=38.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccce--EEEEEECCEEEEEEEcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG 70 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g 70 (181)
.+.|++||-|||||||.||+|.+.+-.+...|.|-. +.++.+ .-.+.+.|.||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCC
Confidence 589999999999999999999999976554443321 222222 34578899999
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=56.60 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=60.2
Q ss_pred EEEEEEEcCCCCCcccc---ccccc---cc---ccEEEEEEECC---C-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030193 61 ISFTVWDVGGQDKIRPL---WRHYF---QN---TQGLIFVVDSN---D-RDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~---~~~~~---~~---~d~~i~v~d~~---~-~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
-.+-++|.|||-+.... .+... +. --.++|++|.. + ..=+.+...-+...+. -.+|.|=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 35778999997543221 11111 11 11345555542 1 1122344444555555 37899999999
Q ss_pred CCCCCCCCHhHHHhhhCCCc---------------c-----------CCc-ceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 128 QDLPNAMNAAEITDKLGLHS---------------L-----------RQR-HWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 128 ~D~~~~~~~~~~~~~~~~~~---------------~-----------~~~-~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+|+......+++.+-+.... + ... -+.+.+..+.+.++++.++..|-.++
T Consensus 174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 99987654444444332110 0 111 13466666777777777777666554
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.5e-05 Score=58.42 Aligned_cols=151 Identities=18% Similarity=0.255 Sum_probs=81.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC-----------------Ccccc-----cCcccceE-----EEEEE---CCEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG-----------------EIVTT-----IPTIGFNV-----ETVEY---KNISFT 64 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~-----------------~~~~~-----~~t~~~~~-----~~~~~---~~~~~~ 64 (181)
.-.+=|+|+||..+||||||.+|..- +.+.. ..|++..+ ..+.. -.++++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 34678899999999999999999541 12211 11232222 12222 347889
Q ss_pred EEEcCCC-------------CCcc-ccc---------------ccccc--cccEEEEEEECC----CcccHHHHHHHHHH
Q 030193 65 VWDVGGQ-------------DKIR-PLW---------------RHYFQ--NTQGLIFVVDSN----DRDRVVEARDELHR 109 (181)
Q Consensus 65 ~~d~~g~-------------~~~~-~~~---------------~~~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~ 109 (181)
+.|..|. +++- .-| ...++ ..-++++.=|-+ .++.+....+...+
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9998871 1110 001 11111 233444444442 24556556555555
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC--CCCHHHHHHHH
Q 030193 110 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS--GEGLYEGLDWL 173 (181)
Q Consensus 110 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i 173 (181)
.++. -++|.++++|-.+-.. .+..+++..+. ++++++++++++.+ .+.+..+++.+
T Consensus 175 ELk~---igKPFvillNs~~P~s-~et~~L~~eL~----ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 175 ELKE---IGKPFVILLNSTKPYS-EETQELAEELE----EKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHH---hCCCEEEEEeCCCCCC-HHHHHHHHHHH----HHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 5554 4799999999988432 23333443332 34556777777654 34444444443
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=59.84 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=34.3
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCccc
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT 44 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~ 44 (181)
|..++..+...+..+++++|++|.|||+++++|...+...
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~ 88 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ 88 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC
Confidence 5567777777888999999999999999999999877543
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=59.71 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=35.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc--cC-------cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT--IP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~-------t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
..++++|++|+|||||+|.+.+...... .+ .+......+.... ...++|+||-..+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 5789999999999999999998653311 11 0111112222221 23689999986553
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.7e-06 Score=61.20 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
...++++|++|+|||||+|++.+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 45789999999999999999988653
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.6e-05 Score=61.62 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=74.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------cccccC---cccceEEE--E------------------EEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTTIP---TIGFNVET--V------------------EYK 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~~~---t~~~~~~~--~------------------~~~ 59 (181)
.+..++.++.+...|||||..+|.... |.+... ..++.+.. + +..
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 455678899999999999999996532 211111 11111111 1 113
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
+.-++++|.|||-+|.+..-..++-.|+.+.|+|-.+--.. +.+..+.+.+. .++.-+++.||.|-
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHH----hhccceEEeehhhH
Confidence 57789999999999999999999999999999997543211 12233333333 25666889999994
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-05 Score=55.71 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=58.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc--------c--c-ccC-----------cccceEEEE-----------------EEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI--------V--T-TIP-----------TIGFNVETV-----------------EYK 59 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~--------~--~-~~~-----------t~~~~~~~~-----------------~~~ 59 (181)
-|+++|++|+||||.+-+|..... . + ... ..++..... ..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 478999999999999888843210 0 0 000 111221111 113
Q ss_pred CEEEEEEEcCCCCCcccc----ccccc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+.++||+|....... +..+. ...+-+++|++++... +... ........ -.+--+++||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~----~~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEA----FGIDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHH----SSTCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhc----ccCceEEEEeecCCCC
Confidence 477999999996543321 11221 1577899999997432 2222 12222211 1123677999997654
Q ss_pred C
Q 030193 134 M 134 (181)
Q Consensus 134 ~ 134 (181)
.
T Consensus 156 ~ 156 (196)
T PF00448_consen 156 L 156 (196)
T ss_dssp T
T ss_pred c
Confidence 3
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.9e-06 Score=44.96 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=25.6
Q ss_pred ccccEEEEEEECCCcccHHHHH--HHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEAR--DELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
+-.+.++|++|++..+++.-.. ..+.++... ..++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 3478999999999877664333 334343332 13899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-05 Score=56.06 Aligned_cols=109 Identities=21% Similarity=0.247 Sum_probs=63.5
Q ss_pred EEEEcCCCCChHHHHhhhhc-C-----------Ccccc------cCcccceEEEEEE---------------------C-
Q 030193 20 ILMVGLDAAGKTTILYKLKL-G-----------EIVTT------IPTIGFNVETVEY---------------------K- 59 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~-~-----------~~~~~------~~t~~~~~~~~~~---------------------~- 59 (181)
+++-|.-|||||||+++++. . ++... ....+.....+.. .
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 57899999999999999983 1 11100 0011122222211 2
Q ss_pred -CEEEEEEEcCCCCCcccc--cccc---cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 60 -NISFTVWDVGGQDKIRPL--WRHY---FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 -~~~~~~~d~~g~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.....++++.|-..-... .... .-..+.++.|+|+.+..........+.+.+.... ++++||+|+.+.
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~ 156 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSD 156 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHH
T ss_pred CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCCh
Confidence 356778899985443333 1111 1236889999999765444455556666666433 999999999765
Q ss_pred C
Q 030193 134 M 134 (181)
Q Consensus 134 ~ 134 (181)
.
T Consensus 157 ~ 157 (178)
T PF02492_consen 157 E 157 (178)
T ss_dssp H
T ss_pred h
Confidence 4
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00026 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998654
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.5e-05 Score=57.85 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=64.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc----------cccC--------------cccceEEEE-----------EECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIP--------------TIGFNVETV-----------EYKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------~~~~--------------t~~~~~~~~-----------~~~~ 60 (181)
+.-.++++|++|+||||++..|...... +... ..+.....+ ...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 4568889999999999999998643110 0000 011111111 1245
Q ss_pred EEEEEEEcCCCCCcccc----cccc--cccccEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~ 132 (181)
..+.++||+|....... .... .....-.++|++++. .+........|..........- .+--+|+||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 78999999996543221 1111 123456688999874 3333444344443322110000 13467889999765
Q ss_pred C
Q 030193 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 296 ~ 296 (374)
T PRK14722 296 N 296 (374)
T ss_pred C
Confidence 4
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.9e-05 Score=52.68 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCCCCccc----ccccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++|++|...... ....+ ....+.+++|+|+....+ ..+......... + ...+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 46688999999743221 11111 124899999999964432 222333332221 2 35678899997653
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=56.71 Aligned_cols=87 Identities=24% Similarity=0.185 Sum_probs=58.5
Q ss_pred ccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 83 QNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
.+.|-+++|+.+.+|+ +...+++++.. ... .++..++++||+|+.+..+.+. ......+...+++++.+|++
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~-ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVL-AEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHH-HHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecCc
Confidence 4567777777777664 33333333333 222 4788888899999987655553 12233344567789999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030193 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~ 176 (181)
++++++++.+.+...
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999999887653
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.3e-05 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|++-|++|+||||++.+++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1e-05 Score=61.93 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=40.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEE-ECCEEEEEEEcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-YKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~d~~g 70 (181)
.+.++++|+|-|++||||+||+|.........++.++...--. .-+-.+.|.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCc
Confidence 5689999999999999999999998876544443333221111 1245689999999
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00034 Score=53.30 Aligned_cols=141 Identities=21% Similarity=0.167 Sum_probs=74.7
Q ss_pred EEEEcCCCCChHHHHhhhhcCCc-----------c----cc---cC---------cccceEEEEEE-------------C
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEI-----------V----TT---IP---------TIGFNVETVEY-------------K 59 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~-----------~----~~---~~---------t~~~~~~~~~~-------------~ 59 (181)
.++-|.=||||||++++++.+.. . +. .. +.++-++.+.. .
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 35678899999999999976432 1 10 00 11222222211 2
Q ss_pred CEEEEEEEcCCCCCcccccc-----ccc---ccccEEEEEEECCCcccHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWR-----HYF---QNTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~-----~~~---~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
.....++++.|-..-..... ..+ -..|.++-|+|+.+...... ..+.+.+.+.. --++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccC
Confidence 24567788888432211111 111 23688999999975432222 33444444443 23899999999
Q ss_pred CCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
.+....+.++...... +...+++.+|. .+....+++
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc-cCCCHHHhh
Confidence 9876544444333211 12335666665 334444333
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=44.64 Aligned_cols=97 Identities=20% Similarity=0.114 Sum_probs=55.5
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccc-cccccccccEEEEEEECCCcc
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+++.|..|+|||+++..+...--. .+.....++ .+.++|+++....... .......+|.++++++... .
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-L 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-h
Confidence 578899999999998888654321 111222222 8899999987543331 1344467899999998863 3
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+....................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3344333322222222223455555544
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.7e-05 Score=58.06 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-.+++|++|+|||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5679999999999999999874
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.7e-05 Score=65.78 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=62.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cc--cC-cccceEEEEE-ECCEEEEEEEcCCCC--------Ccccccccc----
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IP-TIGFNVETVE-YKNISFTVWDVGGQD--------KIRPLWRHY---- 81 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~-t~~~~~~~~~-~~~~~~~~~d~~g~~--------~~~~~~~~~---- 81 (181)
=-+|+|++|+||||++..---+... .. .. ..+......+ +-.-+-.++||+|.. .-...|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred ceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 3589999999999998654332211 11 01 1111111111 223467889999931 222334322
Q ss_pred -----cccccEEEEEEECCCcc----cHH-H----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 82 -----FQNTQGLIFVVDSNDRD----RVV-E----ARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 -----~~~~d~~i~v~d~~~~~----s~~-~----~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+..|++|+.+|+++.- ... + +..-+.+ +........|+.+++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~E-l~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQE-LRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHH-HHHhhccCCceEEEEecccccc
Confidence 35689999999985421 111 1 1111222 2223335799999999999875
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.1e-05 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
|
... |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=55.29 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++.|.-|||||||+|+++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 457899999999999999754
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=54.88 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 467899999999999999753
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00014 Score=57.28 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=60.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-----c----ccCc---------------ccceEEE-----------EEECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-----T----TIPT---------------IGFNVET-----------VEYKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~----~~~t---------------~~~~~~~-----------~~~~~ 60 (181)
..-.|+++|+.|+||||++..|.+.... . ...+ .++.... ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 3458999999999999999988653110 0 0000 1111111 11245
Q ss_pred EEEEEEEcCCCCCcc----ccccccc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIR----PLWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
....++||+|..... .....+. ....-.++|+|++.. ...+.+....+ .. --+--+++||.|....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f-~~----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAY-QG----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHh-cC----CCCCEEEEEeeeCCCC
Confidence 678999999954321 1122221 234567899999732 12233333222 21 1234688999997654
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.2e-05 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+|+|++|||||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0004 Score=56.00 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=60.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--------Cc--ccccC--------------cccceEEEE-----------EEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EI--VTTIP--------------TIGFNVETV-----------EYK 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~--~~~~~--------------t~~~~~~~~-----------~~~ 59 (181)
...-.|+++|++|+||||++..|... .. .+..+ ..++.+... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568899999999999999888542 11 11111 011111111 113
Q ss_pred CEEEEEEEcCCCCCcccc-------cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPL-------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.+.|+||+|....... .... . ....++|++... +.....+.+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 578999999996432211 1111 1 234677777753 23333333333221 246779999999754
Q ss_pred C
Q 030193 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 499 ~ 499 (559)
T PRK12727 499 R 499 (559)
T ss_pred c
Confidence 3
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=6e-05 Score=52.57 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=8e-05 Score=55.52 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=36.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-----cccC----cccceE-EEEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-----TTIP----TIGFNV-ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~----t~~~~~-~~~~~~~~~~~~~d~~g~ 71 (181)
....+++|+|-||+|||||+|++...... ...+ |..+.. .++. ..-.+.+.||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 35789999999999999999999765432 1222 222222 2222 2345889999993
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=56.72 Aligned_cols=109 Identities=23% Similarity=0.324 Sum_probs=59.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC------Cc--c---cccC-----------cccceEEEE---------------EE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--V---TTIP-----------TIGFNVETV---------------EY 58 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~------~~--~---~~~~-----------t~~~~~~~~---------------~~ 58 (181)
....|+++|++|+||||++..+... .+ . ...+ ..+..+... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 3567889999999999998888531 10 0 0111 011111110 00
Q ss_pred CCEEEEEEEcCCCCCcccc----cc--cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC-eEEEEEeCCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPL----WR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~ 131 (181)
....+.|+||+|....... .. .....+|.+++|+|++..+ ........+ .. .. ..-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F-~~----~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAF-HE----AVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHH-Hh----cCCCCEEEEecccCC
Confidence 2347899999996543211 11 1123578999999986532 222222221 11 12 346788999975
Q ss_pred C
Q 030193 132 N 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 4
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.9e-05 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|+|+|++|||||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00026 Score=59.44 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc----------c---ccC-----------cccceEEEE-----------EECCEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV----------T---TIP-----------TIGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~----------~---~~~-----------t~~~~~~~~-----------~~~~~~ 62 (181)
--|+++|+.|+||||.+..+...... + ... ..++..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 35789999999999999988653210 0 000 011111100 124568
Q ss_pred EEEEEcCCCCCcc----cccccc--cccccEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 63 FTVWDVGGQDKIR----PLWRHY--FQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 63 ~~~~d~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.|+||+|..... ...... ....+-.++|+|++. .+.+..+.+.|..... --+--+|+||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCCCC
Confidence 9999999943221 111111 134567899999973 2333333333322111 0234688999997654
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=55.10 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc----------ccccCc--------------ccceEEEE-----------EECCEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEI----------VTTIPT--------------IGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~----------~~~~~t--------------~~~~~~~~-----------~~~~~~ 62 (181)
-.++++|++|+||||++..|..... .+..+. .++..... ...++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4789999999999998777643111 011110 11111110 113578
Q ss_pred EEEEEcCCCCCcc----cccccccc---cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 63 FTVWDVGGQDKIR----PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 63 ~~~~d~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.|+||+|..... .....++. ...-.++|++++.. ...+.+.+..+ .. .+ +--+++||.|....
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDETSS 372 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEeccccccc
Confidence 9999999965432 11222222 33567788888532 22333333332 21 11 23689999997543
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.2e-05 Score=42.10 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+|.|+.|+|||||++++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998853
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00033 Score=54.36 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccC-----c------------------ccceEEEE-----------EECCE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP-----T------------------IGFNVETV-----------EYKNI 61 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~-----t------------------~~~~~~~~-----------~~~~~ 61 (181)
.-.|+++||.|+||||-+-.|...... ...+ | +++...-+ ....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 677899999999999998888544321 0000 1 11111111 12457
Q ss_pred EEEEEEcCCCCCcccc----ccccccc--ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 62 SFTVWDVGGQDKIRPL----WRHYFQN--TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+.++||.|...+... ...++.. ..-+.+|++++... ..+...+..+.. =..--+++||.|-...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~-----~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSL-----FPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhcc-----CCcceeEEEcccccCc
Confidence 8999999997554332 3333332 34556788886432 233333333321 1223578999997653
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00019 Score=56.34 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=60.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------c--ccccC--------------cccceEEEE----------EECCEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE-------I--VTTIP--------------TIGFNVETV----------EYKNISF 63 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~-------~--~~~~~--------------t~~~~~~~~----------~~~~~~~ 63 (181)
..-++++|++||||||++..|.... . .+..+ ..+...... ...++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999999886421 0 01000 111111111 1136788
Q ss_pred EEEEcCCCCCc-cc---ccccccc-----cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 64 TVWDVGGQDKI-RP---LWRHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 64 ~~~d~~g~~~~-~~---~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.++||+|.... .. .+..++. ...-.++|+|++... ....+....+ .. --+--+|+||.|-...-
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~~ 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADFL 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCCc
Confidence 99999996422 11 1122211 244688999996432 2333323222 21 12457889999976543
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=8.5e-05 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+++|+|||||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999743
|
... |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00028 Score=55.80 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=35.9
Q ss_pred CEEEEEEEcCCCCCccc----ccccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.+.|+||+|...... ....+ ....+.+++|+|+...+ ...+....+... -...-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~----~~i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA----LGLTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh----CCCCEEEEeCccCcc
Confidence 47799999999543211 11111 12467789999986432 222222222211 112457779999654
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00076 Score=42.53 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=47.8
Q ss_pred EEEEcC-CCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 20 ILMVGL-DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~-~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
|++.|. .|+||||+...+...-.....+ ......+ ..+.+.++|+|+...... ...+..+|.++++++.+ ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~---vl~~d~d-~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~-~~ 74 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR---VLLIDLD-PQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS-PL 74 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc---EEEEeCC-CCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-HH
Confidence 567774 7899999977764322110000 1000011 016789999998754332 25667799999999886 44
Q ss_pred cHHHHHHHH
Q 030193 99 RVVEARDEL 107 (181)
Q Consensus 99 s~~~~~~~~ 107 (181)
++....+.+
T Consensus 75 s~~~~~~~~ 83 (104)
T cd02042 75 DLDGLEKLL 83 (104)
T ss_pred HHHHHHHHH
Confidence 455554443
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=8.5e-05 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.5
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+.++||+|.|.||+||||+..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 37789999999999999999999974
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00012 Score=56.13 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCEEEEEEEcCCCCC-----cccccc-cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 59 KNISFTVWDVGGQDK-----IRPLWR-HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~-----~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+++.+.|.||+|... |..... .-.-+.|-+|+|+|++--+.-.....-|.+.+.- --+++||.|...
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-------g~vIlTKlDGha 254 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-------GAVILTKLDGHA 254 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-------ceEEEEecccCC
Confidence 568999999999321 222211 1113589999999997443333333344443321 246677777653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=9e-05 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
+.=.++++||+|||||||++++-+-+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 445789999999999999999976554
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00077 Score=42.87 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=54.1
Q ss_pred EEEEcC-CCCChHHHHhhhhcCCcc---------cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 20 ILMVGL-DAAGKTTILYKLKLGEIV---------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 20 i~v~G~-~~~GKSsli~~l~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
|+++|. .|+||||+...|...-.. +..+..+ ..+.++|+|+..... ....+..+|.++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~----------~D~IIiDtpp~~~~~--~~~~l~~aD~vl 69 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG----------DDYVVVDLGRSLDEV--SLAALDQADRVF 69 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC----------CCEEEEeCCCCcCHH--HHHHHHHcCeEE
Confidence 344444 789999987666322111 1122111 178999999865432 234567899999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCC-CCeEEEEEeC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELR-DAVLLVFANK 127 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~piivv~nK 127 (181)
++++++ ..++............ .... ...+.+|+|+
T Consensus 70 vvv~~~-~~s~~~~~~~~~~l~~-~~~~~~~~~~lVvNr 106 (106)
T cd03111 70 LVTQQD-LPSIRNAKRLLELLRV-LDYSLPAKIELVLNR 106 (106)
T ss_pred EEecCC-hHHHHHHHHHHHHHHH-cCCCCcCceEEEecC
Confidence 999886 3345555444333222 2222 3467777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=51.78 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=62.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC----------c--ccccC--------------cccceEEEEE-----------EC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE----------I--VTTIP--------------TIGFNVETVE-----------YK 59 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~----------~--~~~~~--------------t~~~~~~~~~-----------~~ 59 (181)
...|+++|++|+||||.+..+...- . .+..+ ..++.+.... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4578899999999999988885321 0 00000 1122221111 14
Q ss_pred CEEEEEEEcCCCCCccc----cccccccc---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRP----LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.+.++||+|...... ....++.. ..-.++|+|++.. ...+.+.+..+.. -.+--+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 67899999999643221 11222221 2368899999743 2334444444321 124578899999765
Q ss_pred CC
Q 030193 133 AM 134 (181)
Q Consensus 133 ~~ 134 (181)
.-
T Consensus 327 ~~ 328 (388)
T PRK12723 327 CV 328 (388)
T ss_pred cc
Confidence 43
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=42.80 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~ 41 (181)
|++.|++|+||||+.+.+...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998663
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=47.01 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=30.5
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCC
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLP 131 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~ 131 (181)
..+++|.+|.|+|++ ..++.... .+.+...+ -+ .++.+|+||.|..
T Consensus 152 ~~~~vD~vivVvDpS-~~sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPS-YKSLRTAE-RIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCc-HHHHHHHH-HHHHHHHH---hCCceEEEEEeeccch
Confidence 346799999999997 33443332 23333333 23 7899999999954
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0008 Score=53.27 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCEEEEEEEcCCCCCccc----ccccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 59 KNISFTVWDVGGQDKIRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.++.+.|+||+|...... ....+ ....+.+++|+|+...+ ........+.... ...-+|.||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v----~i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL----GLTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence 346799999999543211 11111 23478899999986432 2222222222111 13467799999644
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00032 Score=48.69 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=33.8
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH--hcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
|++++|+|+..+.+- ....+.+. +.. .+.|+++|+||+|+.+.....++...+
T Consensus 1 DvVl~VvDar~p~~~--~~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGC--RCPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCC--CCHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 789999999765321 12233333 222 358999999999998655444444443
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00034 Score=54.21 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=64.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--------cccccC--------------cccceEEEEE--------------EC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVTTIP--------------TIGFNVETVE--------------YK 59 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~~--------------t~~~~~~~~~--------------~~ 59 (181)
..-.++++|+.|+||||++..+...- +.+..+ ..++.+.... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 35567899999999999998885311 011111 1111111110 02
Q ss_pred CEEEEEEEcCCCCCcccc----cccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+.|+||+|....... ...+.. ..+.+++|+++.. ........+.. +. .-.+--+|+||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~-f~----~l~i~glI~TKLDET~~ 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK-LA----EIPIDGFIITKMDETTR 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh-cC----cCCCCEEEEEcccCCCC
Confidence 478999999997543221 122222 3466677877632 12223222222 11 12345788999997654
Q ss_pred CCH-hHHHhhhCCC
Q 030193 134 MNA-AEITDKLGLH 146 (181)
Q Consensus 134 ~~~-~~~~~~~~~~ 146 (181)
-.. -.+....+.+
T Consensus 358 ~G~~Lsv~~~tglP 371 (407)
T PRK12726 358 IGDLYTVMQETNLP 371 (407)
T ss_pred ccHHHHHHHHHCCC
Confidence 322 2344444443
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00011 Score=50.51 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999765
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00017 Score=47.85 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=23.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 43 (181)
..-.++|+|+.|+|||||++.+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 3457899999999999999999887643
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00033 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=19.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++|+.|+||||.+..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34588999999999999998864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00016 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-|+++|++|||||||++-+.+-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3357899999999999999998744
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00016 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
+.=-++|+||+|||||||+|-+-+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34468999999999999999997654
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00018 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999964
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0002 Score=46.73 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
|
... |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00042 Score=48.68 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.++.... +..-.++++|++||||||+++.+.+-.
T Consensus 16 ~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 16 AYLWLAV-EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444444 346789999999999999999998754
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00038 Score=53.71 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=50.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE-EEEEECCEEEEEEEcCCCCCcc--cccccccccccEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDKIR--PLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~d~~g~~~~~--~~~~~~~~~~d~~i~ 90 (181)
....|-|+++|-|++||||+||+|.........|-.+..- ..+----.++-++|.||--.-. ...... -.+++=
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~iv---LkGvVR 380 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIV---LKGVVR 380 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHH---hhceee
Confidence 4678999999999999999999999998776555333211 0000001356678999843222 122222 234555
Q ss_pred EEECCCcc
Q 030193 91 VVDSNDRD 98 (181)
Q Consensus 91 v~d~~~~~ 98 (181)
|=++.+++
T Consensus 381 Venv~~pe 388 (572)
T KOG2423|consen 381 VENVKNPE 388 (572)
T ss_pred eeecCCHH
Confidence 66666654
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00023 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+...|+|.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998753
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00097 Score=44.57 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=57.3
Q ss_pred EEcCCCCChHHHHhhhhcCCc--------ccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 22 MVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.-|.+|+|||++.-.+...-- .+..++.. .+ .+.+.++|+|+... ......+..+|.++++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~----~~---~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA----NL---DYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC----CC---CCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcC
Confidence 446789999999666643211 11111110 01 17899999997532 223456788999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
++ ..++......+..+.... ...++.+|+|+.+.
T Consensus 76 ~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 96 344444333332322211 34577899999973
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0033 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-+++-||+|+||||.+..|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999754
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00024 Score=49.79 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00031 Score=46.10 Aligned_cols=27 Identities=33% Similarity=0.249 Sum_probs=23.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~ 43 (181)
.-.++++|++|+|||+++..+...-..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 357899999999999999999876654
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00027 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.|+|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00025 Score=46.47 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~ 41 (181)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998764
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00024 Score=48.65 Aligned_cols=51 Identities=33% Similarity=0.483 Sum_probs=32.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.+.++|.+|+|||||++++...- ...+.....+......+.+ |.+|.+.++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 57899999999999999998632 1223333344444444443 677654443
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=48.89 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=66.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC--------ccccc--------------CcccceEEEE--------------EECC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE--------IVTTI--------------PTIGFNVETV--------------EYKN 60 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~--------------~t~~~~~~~~--------------~~~~ 60 (181)
.-+++++|++|+||||++..+...- +.+.. ...++..... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3699999999999999988775321 00100 0112221111 0125
Q ss_pred EEEEEEEcCCCCCccc----cccccc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRP----LWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+.+.++|++|...... .+..++ ...+-+++|+|++... +...+....+ .. -.+--+++||.|....-
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f-~~----~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF-KD----IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHh-CC----CCCCEEEEEeecCCCCc
Confidence 7899999999753221 122222 2456789999986321 2222322222 21 23457899999987644
Q ss_pred CH-hHHHhhhCC
Q 030193 135 NA-AEITDKLGL 145 (181)
Q Consensus 135 ~~-~~~~~~~~~ 145 (181)
.. -.+....+.
T Consensus 228 G~~l~~~~~~~~ 239 (270)
T PRK06731 228 GELLKIPAVSSA 239 (270)
T ss_pred cHHHHHHHHHCc
Confidence 32 234444443
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00027 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00025 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00029 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|+++|.|||||||+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00031 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.++++|++|+|||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999997653
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00031 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....-|+|.|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999999975
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00062 Score=45.03 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.....+++.|++|+|||++++.+.+.-.
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3466799999999999999999987654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00036 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999997
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00065 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
......|+|.|++||||||+.+.|...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 466778889999999999999999754
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00038 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-|+|.|.+||||||+++.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 466889999999999999999753
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00031 Score=48.91 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998664
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00047 Score=52.55 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=29.0
Q ss_pred hHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhc
Q 030193 4 SFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+.+.+........+.|++-|++|+||||+++.+..
T Consensus 7 ~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 7 ALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred HHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566655557899999999999999999999854
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0092 Score=41.24 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+.++|+|+..... ....+..+|.+++++++. ..++......+ +.+... ......+|+|+.|...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~-~~s~~~~~~~~-~~~~~~--~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPE-ISSLRDADRVK-GLLEAL--GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCC-cchHHHHHHHH-HHHHHc--CCceEEEEEeCCcccc
Confidence 79999999864432 334457899999999886 34455444433 222221 2346779999998654
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00038 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...++++|+|++|||||+++..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999888754
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00053 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-+++++|.+|+|||||+|.+.+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 4589999999999999999998754
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00052 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=20.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
...+-|+|.|++||||||+++.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 567889999999999999998764
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0003 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.235 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0004 Score=48.67 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00039 Score=48.12 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00041 Score=48.23 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++|+|++|+|||||+|-+.+=.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc
Confidence 45578999999999999999997644
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00065 Score=52.26 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
+.+.+|+|.|++||||||+++++++.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 568899999999999999999998754
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0037 Score=49.00 Aligned_cols=110 Identities=25% Similarity=0.217 Sum_probs=65.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC------Cc-----ccccC-----------cccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~------~~-----~~~~~-----------t~~~~~~~~----------------- 56 (181)
..-.|+++|-.|+||||.+-.|... .+ ..+.| ..+..++..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4567999999999999998777431 10 01122 122222221
Q ss_pred EECCEEEEEEEcCCCCCcccc----c--ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 57 EYKNISFTVWDVGGQDKIRPL----W--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
....+.+.|+||+|....... . -.-.-+.|-+++|+|+.--+.-.+..+.|.+.+.. .-+|+||.|.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKlDG 251 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKLDG 251 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcccC
Confidence 113478999999995332211 1 11224689999999997554444555555554432 2477888886
Q ss_pred CC
Q 030193 131 PN 132 (181)
Q Consensus 131 ~~ 132 (181)
..
T Consensus 252 da 253 (451)
T COG0541 252 DA 253 (451)
T ss_pred CC
Confidence 53
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00041 Score=44.07 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4568999999999999999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0004 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.|+++|++||||||+++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998753
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00042 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|+++|+|||||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999753
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00038 Score=48.46 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=16.7
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....-.++|.|++|+|||+|++++..
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35567789999999999999998854
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00043 Score=47.47 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030193 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~ 38 (181)
.+|+|.|.||+||||++++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999997
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00048 Score=45.88 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.|+++|++|+|||+++..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988643
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00061 Score=51.61 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=25.1
Q ss_pred HHHhhhccccceEEEEcCCCCChHHHHhhhhc
Q 030193 8 LFSKLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
++........+-|+|.|++||||||+++.|..
T Consensus 77 fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 77 FLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333446778899999999999999988864
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00045 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.=-|+++|++|+|||||++++.+
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 34689999999999999999976
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0004 Score=49.42 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.9
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030193 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~ 38 (181)
-+++||+|||||||++++-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 3799999999999998883
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00048 Score=48.10 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+++|+|||||||++..+...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0005 Score=47.95 Aligned_cols=28 Identities=36% Similarity=0.284 Sum_probs=23.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
...-.++++|+.|+|||||++.+.+-..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3455789999999999999999988653
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00049 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~ 41 (181)
|+|+|++||||||+++.+.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887644
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0005 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++||.|||||||++++.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34568999999999999999976
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00061 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
....-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35566789999999999999999754
|
|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00046 Score=48.57 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|+|+|+|||||||++..|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00057 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00057 Score=48.34 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030193 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~ 39 (181)
|+|.|++|||||||.+.|..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998843
|
7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00068 Score=48.24 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..--|+++|++|||||||++.+.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35568999999999999999998753
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0006 Score=49.00 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999999864
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.001 Score=48.11 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.8
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+-|+|-|.+|||||||.+.|..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999988864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00062 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.. .++++|+.|+|||||++.+.+-.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 88999999999999999998854
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00059 Score=48.01 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
..=.++++|+.|+|||||++.+.+...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999999988653
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00064 Score=49.52 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00065 Score=48.59 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=22.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999865
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 181 | ||||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 1e-103 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 5e-91 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 2e-90 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 1e-88 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 1e-85 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 3e-85 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 8e-85 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 2e-84 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 2e-83 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 3e-82 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 3e-82 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 2e-80 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 1e-79 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 8e-77 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 3e-74 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 4e-74 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 3e-73 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 7e-73 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 3e-70 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 4e-70 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 5e-70 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 7e-70 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 1e-67 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 1e-57 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 5e-55 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 4e-54 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 2e-50 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 2e-48 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 1e-47 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 2e-47 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 1e-46 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 1e-44 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-44 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 1e-44 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-44 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 2e-44 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 1e-42 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 1e-39 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 6e-39 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 7e-39 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 3e-38 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 3e-37 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 7e-36 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 6e-28 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 1e-27 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 6e-27 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 3e-26 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 3e-24 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 5e-24 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 3e-20 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 3e-20 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 4e-20 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 6e-20 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 7e-09 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 1e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 2e-08 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 2e-08 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 7e-08 | ||
| 3onw_A | 328 | Structure Of A G-Alpha-I1 Mutant With Enhanced Affi | 8e-08 | ||
| 3d7m_A | 354 | Crystal Structure Of The G Protein Fast-Exchange Do | 8e-08 | ||
| 1kjy_A | 325 | Crystal Structure Of Human G[alpha]i1 Bound To The | 8e-08 | ||
| 2xns_A | 327 | Crystal Structure Of Human G Alpha I1 Bound To A De | 8e-08 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 8e-08 | ||
| 3ffb_A | 360 | Crystal Structure Of A Fast Activating G Protein Mu | 8e-08 | ||
| 3qi2_A | 328 | A Galpha P-Loop Mutation Prevents Transition To The | 9e-08 | ||
| 2ik8_A | 324 | Crystal Structure Of The Heterodimeric Complex Of H | 9e-08 | ||
| 2gtp_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 9e-08 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 9e-08 | ||
| 1y3a_A | 329 | Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe | 9e-08 | ||
| 3qe0_A | 325 | A Galpha-I1 P-Loop Mutation Prevents Transition To | 9e-08 | ||
| 1gp2_A | 353 | G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi | 9e-08 | ||
| 1as0_A | 353 | Gtp-Gamma-S Bound G42v Gia1 Length = 353 | 9e-08 | ||
| 2g83_A | 313 | Structure Of Activated G-alpha-i1 Bound To A Nucleo | 9e-08 | ||
| 4g5q_A | 330 | Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | 9e-08 | ||
| 2zjy_A | 356 | Structure Of The K349p Mutant Of Gi Alpha 1 Subunit | 1e-07 | ||
| 1bh2_A | 315 | A326s Mutant Of An Inhibitory Alpha Subunit Length | 1e-07 | ||
| 1fqj_A | 325 | Crystal Structure Of The Heterotrimeric Complex Of | 1e-07 | ||
| 4g5r_A | 330 | Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | 1e-07 | ||
| 4g5o_A | 330 | Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length | 1e-07 | ||
| 2ihb_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-07 | ||
| 2ode_A | 350 | Crystal Structure Of The Heterodimeric Complex Of H | 2e-07 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-07 | ||
| 3v00_C | 356 | Studies Of A Constitutively Active G-Alpha Subunit | 2e-07 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 2e-07 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 2e-07 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 2e-07 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 2e-07 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 2e-07 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 3e-07 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 3e-07 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 3e-07 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 3e-07 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 3e-07 | ||
| 3ums_A | 354 | Crystal Structure Of The G202a Mutant Of Human G-Al | 4e-07 | ||
| 1gg2_A | 353 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-07 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 5e-07 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 5e-07 | ||
| 3umr_A | 354 | Crystal Structure Of The G202d Mutant Of Human G-Al | 6e-07 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 7e-07 | ||
| 1gil_A | 353 | Structure Of Active Conformations Of Gia1 And The M | 8e-07 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 8e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 1e-06 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 1e-06 | ||
| 3c7k_A | 333 | Molecular Architecture Of Galphao And The Structura | 1e-06 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 2e-06 | ||
| 1got_A | 350 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-06 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 2e-06 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 2e-06 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 3e-06 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 4e-06 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 4e-06 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 5e-06 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 6e-06 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 7e-06 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 7e-06 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 9e-06 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 9e-06 | ||
| 1tnd_A | 324 | The 2.2 Angstroms Crystal Structure Of Transducin-A | 2e-05 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 2e-05 | ||
| 3ah8_A | 355 | Structure Of Heterotrimeric G Protein Galpha-Q Beta | 2e-05 | ||
| 2bcj_Q | 353 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-05 | ||
| 4ekc_A | 347 | Structure Of Human Regulator Of G Protein Signaling | 2e-05 | ||
| 3ohm_A | 327 | Crystal Structure Of Activated G Alpha Q Bound To I | 2e-05 | ||
| 4gnk_A | 353 | Crystal Structure Of Galphaq In Complex With Full-l | 2e-05 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 2e-05 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 3e-05 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 3e-05 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 3e-05 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 3e-05 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 3e-05 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 3e-05 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 4e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 4e-05 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 4e-05 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 4e-05 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 4e-05 | ||
| 1zcb_A | 362 | Crystal Structure Of G Alpha 13 In Complex With Gdp | 5e-05 | ||
| 3cx7_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 5e-05 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 5e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 5e-05 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 5e-05 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 5e-05 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 9e-05 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 1e-04 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 1e-04 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 1e-04 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 1e-04 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 1e-04 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 2e-04 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-04 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 2e-04 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 2e-04 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 2e-04 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 2e-04 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 2e-04 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-04 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 2e-04 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 3e-04 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 3e-04 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 3e-04 | ||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 3e-04 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 4e-04 | ||
| 3cx6_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 4e-04 | ||
| 3sn6_A | 380 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-04 | ||
| 1cul_C | 380 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 1cjk_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 5e-04 | ||
| 1cs4_C | 394 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 1azs_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 7e-04 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 9e-04 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 9e-04 | ||
| 4fid_A | 340 | Crystal Structure Of A Heterotrimeric G-Protein Sub | 9e-04 |
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328 | Back alignment and structure |
|
| >pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354 | Back alignment and structure |
|
| >pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325 | Back alignment and structure |
|
| >pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328 | Back alignment and structure |
|
| >pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324 | Back alignment and structure |
|
| >pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329 | Back alignment and structure |
|
| >pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325 | Back alignment and structure |
|
| >pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353 | Back alignment and structure |
|
| >pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313 | Back alignment and structure |
|
| >pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356 | Back alignment and structure |
|
| >pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315 | Back alignment and structure |
|
| >pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325 | Back alignment and structure |
|
| >pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323 | Back alignment and structure |
|
| >pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355 | Back alignment and structure |
|
| >pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353 | Back alignment and structure |
|
| >pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347 | Back alignment and structure |
|
| >pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327 | Back alignment and structure |
|
| >pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362 | Back alignment and structure |
|
| >pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338 | Back alignment and structure |
|
| >pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380 | Back alignment and structure |
|
| >pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380 | Back alignment and structure |
|
| >pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394 | Back alignment and structure |
|
| >pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 354 bits (911), Expect = e-127
Identities = 95/184 (51%), Positives = 135/184 (73%), Gaps = 3/184 (1%)
Query: 1 MGLSFTKL---FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 57
MG L L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117
YKNISF VWD+GGQ +RP WR YF +T +I+VVDS DRDR+ A+ EL+ +L+EDELR
Sbjct: 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 118 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
++LL+FANKQDLP+A + AEI ++LG+ S+ R W I + + +G+GL EG+DWL +
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 178 ATKA 181
+
Sbjct: 183 REQG 186
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 353 bits (909), Expect = e-127
Identities = 53/186 (28%), Positives = 103/186 (55%), Gaps = 6/186 (3%)
Query: 1 MGLSFT-----KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE 54
MG S +K+EM + +VGL +GKTT + + G+ IPT+GFN+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60
Query: 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
+ N++ +WD+GGQ + R +W Y + ++++VD+ D++++ +++ELH +L++
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120
Query: 115 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
+L+ +LV NK+DLP A++ E+ +K+ L +++ R S + + L WL
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
Query: 175 NNIATK 180
+ ++
Sbjct: 181 QHSKSR 186
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 350 bits (901), Expect = e-126
Identities = 142/180 (78%), Positives = 158/180 (87%), Gaps = 4/180 (2%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
G LFS++F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 17 RG----SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAV
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQD+PNAM +E+TDKLGL LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-126
Identities = 84/180 (46%), Positives = 126/180 (70%), Gaps = 1/180 (0%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG+ FT+++ +LF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LL+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ + + +
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 349 bits (898), Expect = e-125
Identities = 85/180 (47%), Positives = 121/180 (67%), Gaps = 1/180 (0%)
Query: 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL T L ++E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++
Sbjct: 3 MGL-LTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+WDVGGQ +R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LL+FANKQDLP A++ I + L L S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 348 bits (894), Expect = e-125
Identities = 103/181 (56%), Positives = 136/181 (75%), Gaps = 1/181 (0%)
Query: 1 MGLSFTKLFSKLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
MG F+ +F KL+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
N+ VWD+GGQ IRP WR Y+ +T +IFVVDS D+DR+ A ELH ML E+EL+DA
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179
LLVFANKQD P A++A+E++ +L L L+ R W I ++ A GEG+ EGLDWL + I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180
Query: 180 K 180
+
Sbjct: 181 E 181
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-124
Identities = 95/169 (56%), Positives = 125/169 (73%)
Query: 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
IRP WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
AM ++E+ + LGL +L+ R W I T AT G GL E ++WL + ++
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-123
Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 9/185 (4%)
Query: 1 MGLSFTKLFSKL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
G F + + L K ++L +GLD AGKTT+L+ LK + T PT E +
Sbjct: 7 FGW-FRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
NI FT +D+GG + R LW+ YF G++F+VD+ D +R EAR EL + N EL+D
Sbjct: 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV 125
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDW 172
++ NK D PNA++ AE+ LGL + QR + G E W
Sbjct: 126 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQW 185
Query: 173 LSNNI 177
LS I
Sbjct: 186 LSQYI 190
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 343 bits (882), Expect = e-123
Identities = 83/176 (47%), Positives = 115/176 (65%), Gaps = 2/176 (1%)
Query: 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
KL S +E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ +
Sbjct: 6 LRKLKS--APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
VWD+GGQ KIRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+F
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
ANKQDL A A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+ K
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 338 bits (868), Expect = e-121
Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 4/181 (2%)
Query: 1 MGLSFTKLF--SKLF--AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV 56
MG S S L +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60
Query: 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 116
N F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++L
Sbjct: 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120
Query: 117 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
R A LL+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ +
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
Query: 177 I 177
+
Sbjct: 181 L 181
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-120
Identities = 149/163 (91%), Positives = 156/163 (95%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 333 bits (856), Expect = e-119
Identities = 74/185 (40%), Positives = 115/185 (62%), Gaps = 6/185 (3%)
Query: 2 GLSFTKLFSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVE 57
S L KE+ +L +GLD +GKTTI+ KLK +PTIGF++E +
Sbjct: 4 SHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK 63
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL- 116
++SFTV+D+ GQ + R LW HY++ Q +IFV+DS+DR R+V A++EL +LN ++
Sbjct: 64 SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK 123
Query: 117 -RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
R +L FANK DL +A+ + +++ L L +++ + W+I ++ A GEGL EG+DWL +
Sbjct: 124 HRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD 183
Query: 176 NIATK 180
I T
Sbjct: 184 QIQTV 188
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 333 bits (855), Expect = e-118
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 20/197 (10%)
Query: 1 MGLSFTKLFSKL--------FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN 52
M F ++S KK +++ +GLD AGKTT+L+ LK + +PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 53 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 112
E + ++FT +D+GG + R +W++Y G++F+VD D +R++E+++EL ++
Sbjct: 61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 113 EDELRDAVLLVFANKQDLPNAMNAAEITDKLG------------LHSLRQRHWYIQSTCA 160
++ + + +L+ NK D P A++ + + G L L R +
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 161 TSGEGLYEGLDWLSNNI 177
+G EG W++ I
Sbjct: 181 LKRQGYGEGFRWMAQYI 197
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-113
Identities = 152/166 (91%), Positives = 159/166 (95%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
RPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAM
Sbjct: 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
NAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + +
Sbjct: 283 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 6e-86
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQ 71
+ +L VGL +GKT + +L G+ T +I + + N S T+ D+ G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 72 DKIRP-LWRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDEL--RDAVLLVFANK 127
+ +R L + + + ++FVVDS R V + + L+++L + LL+ NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
QD+ A +A I +L R +S ++ + L
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVT--RSAAPSTLDSSSTAPAQLGKK 171
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 1e-77
Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 8 LFSKLFAKKEMRILMVGLDAAGKTTILYKLK-------LGEIVT----TIPTIGFN---- 52
+ + +I+ G +GKTT L + GE+V+ T+ F+
Sbjct: 5 TINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL 64
Query: 53 -VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 111
+ V+ F ++ V GQ + + G++FV DS +R+ + + M
Sbjct: 65 DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMR 123
Query: 112 NE-----DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
L D +++ NK+DLP+A+ + + + + AT G+G+
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG----KFPVLEAVATEGKGV 179
Query: 167 YEGLDWLSNNIATK 180
+E L +S + +
Sbjct: 180 FETLKEVSRLVLAR 193
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 218 bits (556), Expect = 6e-73
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 11/170 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+ I++ G +GKT++L L + T+ + + +Y T+ D G K+
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKL 68
Query: 75 RPLWRHYFQN----TQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAV---LLVFAN 126
R Y + +GLIF+VDS D ++ + L +L+ E +L+ N
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128
Query: 127 KQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
K +L A ++I D L + + +R + + L
Sbjct: 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 5e-72
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
S + I++ G +GKT++L L + T+ + + +Y T+ D
Sbjct: 41 SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFP 99
Query: 70 GQDKIRPLWRHYFQN----TQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAV---L 121
G K+R Y + +GLIF+VDS D ++ + L +L+ E +
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159
Query: 122 LVFANKQDLPNAMNAAEITDKLG--LHSLRQR 151
L+ NK +L A ++I D L + + +R
Sbjct: 160 LIACNKSELFTARPPSKIKDALESEIQKVIER 191
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 186 bits (472), Expect = 4e-60
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 5/127 (3%)
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNED- 114
+ + G + + P + + G I+V ++ R + + M +
Sbjct: 99 FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF 158
Query: 115 -ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+L++ Q M + +L L+ L W +Q T A + G G++W+
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWI 217
Query: 174 SNNIATK 180
+ +K
Sbjct: 218 LEEVESK 224
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 171 bits (433), Expect = 2e-53
Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNED--ELRDAVLL 122
G + + P + + G I+V ++ R + + M + +L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
+ Q M + +L L+ L W +Q T A + G G++W+ + +K
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 4e-50
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 10 SKLFAKKEMRILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYK-NISFT 64
+ F + RIL++GL +GK++I +K+ E + T + + ++F
Sbjct: 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQ 72
Query: 65 VWDVGGQDKIRPLW---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDA 119
+WD GQ F+ T LI+V+D+ D EA LH +++ D
Sbjct: 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTRLHITVSKAYKVNPDM 130
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
VF +K D ++D + + R H A +G
Sbjct: 131 NFEVFIHKVDG--------LSDDHKIETQRDIHQRANDDLADAG 166
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-37
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 13/137 (9%)
Query: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L++G +GK+++ + TI + + N++ +WD GGQD
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 74 -----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFAN 126
H FQ Q LI V D + ++ + + L + DA + V +
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEV-LKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 127 KQDLPNAMNAAEITDKL 143
K DL E+ +
Sbjct: 124 KMDLVQLDKREELFQIM 140
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 3e-21
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 20 ILMVGLDAAGKTTIL----YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+L++G+ GK++I + ++ + + T ++E I V ++ GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60
Query: 76 PLW---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDL 130
F++ L++V+DS D A L ++ + V +K D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-10
Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 30/185 (16%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIG--FNVETVEYKN-----ISFTVW 66
M++++VG +GKTT+L +L + + T+G ++ ++ + VW
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVF 124
D G+++ H+ + V D + V D + L + R + +++
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV---DAMKPWLFNIKARASSSPVILV 118
Query: 125 ANKQDLPN--------AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
D+ + + E+ +K G ++R H+ + L + L
Sbjct: 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF---VNATEESDALAK----LRKT 171
Query: 177 IATKA 181
I ++
Sbjct: 172 IINES 176
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-09
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
++++++G A GK++I+ + + PTIG F + V + F +WD G
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ L Y++N Q + V D ++AR + L+E +D ++ + NK D
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDX 120
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165
++ + G ++ T A +GE
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 2e-09
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101
+ + T G + ++F ++DVGGQ R W F + +IFVV S+ + V+
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
Query: 102 EARDELHRM----------LNEDELRDAVLLVFANKQDL 130
++ +R+ N LR +++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-09
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVE--YKNISFTVWDVGGQDKI 74
+++VG GKTT + + GE + T+G + I F VWD GQ+K
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
L Y+ Q I + D R V +L R+ + +++ NK D+
Sbjct: 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIK 132
Query: 132 N 132
+
Sbjct: 133 D 133
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 4e-09
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
PT G + E KN+ F + DVGGQ R W F + ++F+V S++ D+V+
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
+ +R+ +N + +++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 6e-09
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101
+ T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 174 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 233
Query: 102 EARDELHRML----------NEDELRDAVLLVFANKQDL 130
+E++RM N D +++F NK+DL
Sbjct: 234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 18/140 (12%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG---FNVETVEY--KNISFTVWDVGGQDK 73
I ++G GKTT + ++ G T+G V ++ I F VWD GQ+K
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
L Y+ G I D R + E ++ +A ++V ANK D+
Sbjct: 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDI 129
Query: 131 PN-----AMNAAEITDKLGL 145
N E+
Sbjct: 130 KNRQKISKKLVMEVLKGKNY 149
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-08
Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 21/164 (12%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-------------IVTTIPTIGFNVETVEYKNIS 62
+E+++ ++G AGKT++L +L + P I E K
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
F WD GGQ+ + + + + + ++DS + + + V++
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGK----SPVIV 155
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
V NK D + I K +G+G+
Sbjct: 156 V-MNKIDENPSY---NIEQKKINERFPAIENRFHRISCKNGDGV 195
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
+E +++++G GK+ + + G + PTI F + +E + + D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y +N QG I V ++ + RD++ R+ +++ V+LV NK
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV--PVILV-GNKV 118
Query: 129 DLPN 132
DL +
Sbjct: 119 DLES 122
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-08
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI + ++ + + D GQ
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + +G + V N+ + R+++ R+ + D D +++ NK
Sbjct: 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKC 136
Query: 129 DLPN 132
DLP
Sbjct: 137 DLPT 140
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 3e-08
Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 46/201 (22%)
Query: 5 FTKLFSKLF-AKKEMRILMVGLDAAGKTT-ILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
+ KL L + +L+ G+ +GKT L ++ + F +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD---FKI--------- 184
Query: 63 FTVW-DVGGQDK----IRPLWRHYFQNTQGLIFVVD--SNDRDRVVEARDELHRMLNEDE 115
F W ++ + + L + +Q D SN + R+ + EL R+L
Sbjct: 185 F--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 116 LRDAVLLVFANKQDLPNAMNA-------------AEITDKLGLHSLRQRHWYIQSTCATS 162
+ LLV N Q+ A NA ++TD L + H +
Sbjct: 243 YENC-LLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLS--AATTTHISLDH----H 294
Query: 163 GEGLY--EGLDWLSNNIATKA 181
L E L + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRP 315
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
E ++++VG D GK+ + +L V PTI + ++ + + D
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQ++ + Y + +G + V N+ + + R+++ R+ + +++ ++LV N
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV--PMVLV-GN 117
Query: 127 KQDLPN 132
K DLP+
Sbjct: 118 KCDLPS 123
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ +++G GK+ +L + TIG F V K I +WD GQ+
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
R + R Y++ G + V D R + + ++ + + + V+++ NK D
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSD 137
Query: 130 LPN 132
L +
Sbjct: 138 LES 140
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-08
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGG 70
+ ++++VG GK+ + + V+ PTI + I + D G
Sbjct: 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
Q++ + Y + G + V NDR + V + ++ R+ + D D +++ NK
Sbjct: 67 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNK 123
Query: 128 QDLPN 132
DL +
Sbjct: 124 ADLES 128
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-08
Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++ +G + GKT+++ + T TIG F +T+ + + +WD G ++
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
R L Y +++ + V D + + + D++ D ++++ NK DL
Sbjct: 79 RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLA 134
Query: 132 N 132
+
Sbjct: 135 D 135
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 7e-08
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G GK+ +L + + + I TIG F ++TV+ K + +WD GQ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G+I V D D + + ++ N+ +A LL+ NK D+
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDM 120
Query: 131 PN 132
Sbjct: 121 ET 122
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++L++G + GKT+ L++ + T+G F V+TV K I +WD GQ++
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G + + D ++ V + ++ + +A +++ NK DL
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDL 139
Query: 131 PN 132
+
Sbjct: 140 ED 141
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-07
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
++++VG GK+ + + V PTI ++ E N V D GQ
Sbjct: 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + G + V D+ + V + R+ + + ++LV ANK
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILV-ANKV 133
Query: 129 DLPN 132
DL +
Sbjct: 134 DLMH 137
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G + GKT+ L++ + T+G F V+T+ K I +WD G ++
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G I + D + + V + ++ + +A +L+ NK D+
Sbjct: 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDM 125
Query: 131 PN 132
+
Sbjct: 126 ED 127
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GKT +L + E + TIG F+ TV + +WD G +
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D EL+ V+++ NK D
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKSD 141
Query: 130 LPN 132
L
Sbjct: 142 LSQ 144
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG F +++ K I +WD GQ+
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D + V EL + + V+++ NK D
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSD 121
Query: 130 LPN 132
L +
Sbjct: 122 LRH 124
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+L++G + GKT+ L++ + T+G F V+TV K + +WD GQ++
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
R + Y++ G I + D + + V + ++ + +A +++ NK D+
Sbjct: 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDME 141
Query: 132 N 132
Sbjct: 142 E 142
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFT--VWDVG 69
+ R+++ G GK++++ + G T IPTI + + + T + D
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTT 64
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G + + R I V + + + + ++ E D +++ N
Sbjct: 65 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVMLVGN 122
Query: 127 KQDLP 131
K D
Sbjct: 123 KCDET 127
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-07
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
M+IL++G GK+ +L + + + I TIG F ++TV+ K + +WD GQ+
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D + + ++ N+ +A LL+ NK D
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSD 136
Query: 130 LPN 132
+
Sbjct: 137 MET 139
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-07
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
+PT G + +++ F + DVGGQ R W H F+N ++F+V ++ D+V+
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL--------------------PNA 133
D +RM + +++ +++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD 269
Query: 134 MNAAE--ITDK-LGLHSLRQRHWYIQSTCAT 161
AA I + L+ + Y TCAT
Sbjct: 270 AQAAREFILKMFVDLNPDSDKIIYSHFTCAT 300
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D+ + V + E+ R +E + L+ NK D
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCD 149
Query: 130 LPN 132
L
Sbjct: 150 LTT 152
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ L++G GK+ +L++ + + TIG F V K + +WD GQ+
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + + + V+++ NK+D
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKD 141
Query: 130 LPN 132
L
Sbjct: 142 LDP 144
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ +++G GK+ +L++ + + TIG F +E + I +WD GQ+
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + N + V+++ NK D
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKAD 131
Query: 130 LPN 132
L
Sbjct: 132 LEA 134
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G GK+++L + TIG F V+T+ +WD GQ++
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ QG+I V D R ++ +EL + D V ++ NK D
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN---DIVNMLVGNKIDK 133
Query: 131 PN 132
N
Sbjct: 134 EN 135
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GKT +L++ T I TIG F + T+E K I +WD GQ+
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G++ V D + D + + + D ++ NK D
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCD 124
Query: 130 LPN 132
+ +
Sbjct: 125 VND 127
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I++ G A GK++ L +L E T+G F ++T+ + +WD GQ++
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + + YF+ G++ + D + E D + +E +++ NK D+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADI 145
Query: 131 PNAMNAAE 138
+
Sbjct: 146 RDTAATEG 153
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-07
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 71
++++VG GKT +L + K G T I T+G F + ++ + +WD GQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ R + Y+++ L+ + D ++ D + E+H D L++ NK
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKV 126
Query: 129 DLPN 132
D +
Sbjct: 127 DSAH 130
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GKT+++ + + I T+G F + + K ++ +WD GQ++
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++++ G I V D D D + + EL +ML + L + NK DL
Sbjct: 69 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLE 124
Query: 132 N 132
Sbjct: 125 K 125
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT ++ + G TIG F ++TVE + + +WD GQ+
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + + Y+++ LI D + E E+ + + + ++ NK D
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKID 142
Query: 130 LPN 132
L
Sbjct: 143 LAE 145
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVG 69
K +I ++G + GK+++ + G+ V + PTI F + + + + D
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQD+ + Y + G I V + + +L M+ + ++ ++LV N
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI--PIMLV-GN 119
Query: 127 KQDLPN 132
K+DL
Sbjct: 120 KKDLHM 125
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-07
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GK+ +L + E + + TIG F T+E K I +WD GQ+
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D + + EL ++ + + + NK D
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKSD 129
Query: 130 LPN 132
L +
Sbjct: 130 LAH 132
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-07
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D+ + V + E+ R +E + L+ NK D
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCD 132
Query: 130 LPN 132
L
Sbjct: 133 LTT 135
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-07
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 6 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNI 61
+ + + F + ++ ++VG A GKT +L IPT+ N V+ K +
Sbjct: 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 78
Query: 62 SFTVWDVGGQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118
+ +WD GQ D++RPL + T + R + + +
Sbjct: 79 NLGLWDTAGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT 135
Query: 119 AVLLVFANKQDLPNAMNAAEITDKLGLH 146
++LV K DL + + E + L
Sbjct: 136 PIILV-GTKLDLRDDKDTIEKLKEKKLT 162
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GK++++ + + TIG F + +E ++ +WD GQ++
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
R L +++ + + +D + + E + E ++ NK D+
Sbjct: 70 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129
Query: 132 N 132
Sbjct: 130 E 130
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG F +++ K I +WD G +
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D EL + + V+++ NK D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSD 145
Query: 130 LPN 132
L +
Sbjct: 146 LRH 148
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++++++G GKT+++ + T+G F ++TVE K I +WD GQ+
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ + Y+++ +G+I V D + D + + + + +E DA LL+ NK D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLD 142
Query: 130 LPN 132
Sbjct: 143 CET 145
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT + Y+ G T TIG F V+ + I +WD GQ+
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 73 KIRP-LWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
+ R + +HY++N ++FV D + + +E + L + D ++ NK
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKC 137
Query: 129 DLPN 132
DL +
Sbjct: 138 DLRS 141
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + I TIG F ++TVE K + +WD GQ+
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ + G+I V D D+ + V E+ R + L+ NK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCD 124
Query: 130 LPN 132
L +
Sbjct: 125 LKD 127
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-07
Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++ +G + GKT+++ + T TIG F +T+ + + +WD GQ++
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
R L Y +++ + V D + + + D++ D ++++ NK DL
Sbjct: 77 RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLS 132
Query: 132 N 132
+
Sbjct: 133 D 133
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FN-VETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI + ++ + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + +G + V N+ + + + R+++ R+ + D++ ++LV NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV--PMVLV-GNKS 118
Query: 129 DLPN 132
DL
Sbjct: 119 DLAA 122
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 9/124 (7%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
+ R+ + G GK++++ + G + IPT+ + + T + D G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
+ + R I V R + + +++ + + E +++ NK
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE--SIPIMLVGNKC 119
Query: 129 DLPN 132
D
Sbjct: 120 DESP 123
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-07
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNISFTVWDVGGQDK 73
++++G GKT+++++ + TIG F + V K + VWD GQ++
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ L +++ + V D + + + RDE N + ++ NK D
Sbjct: 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130
Query: 131 PNA 133
+
Sbjct: 131 EES 133
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-07
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ L++G GK+ +L++ + + TIG F + + K + +WD GQ+
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + ++ + V+++ NK+D
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKD 126
Query: 130 LPN 132
L
Sbjct: 127 LDA 129
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-07
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+ ++G GK++I+ + PTIG F +TV + F +WD GQ++
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ + + V D +D + EL E + V+ + NK DL
Sbjct: 86 HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDLS 141
Query: 132 N 132
+
Sbjct: 142 D 142
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-07
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G A GK++++ + G+ TIG F +TV + F +WD GQ++
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ Q I V D + + A+ EL R + + V+ + NK DL
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLA 124
Query: 132 N 132
N
Sbjct: 125 N 125
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 6e-07
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
+E+++ ++G GK++I+++ PTIG F +TV+Y + F +WD G
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
++ R L Y++ + I V D + + EL + V+ + NK
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNK 120
Query: 128 QDLPN 132
DL +
Sbjct: 121 CDLTD 125
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 6e-07
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
E+ + ++G AGK+ + K ++ P + ETV+++ + V D
Sbjct: 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
D R R Y + V + R D + L E + LL+ N
Sbjct: 78 DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL-GN 135
Query: 127 KQDL 130
K D+
Sbjct: 136 KLDM 139
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-07
Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE-TVEYKNISFTVWDVGG 70
+ E+R+ ++G +GK++++++ G T + E V+ + + + G
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV-FAN 126
+ + +IFV D V +L + E A+ LV +
Sbjct: 64 APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 127 KQDLPN 132
+ +
Sbjct: 119 RISASS 124
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 7e-07
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GKT+++ + + TIG F + V + ++ +WD GQ++
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ L +++ + V D + RDE + + + +V NK DL
Sbjct: 71 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130
Query: 132 N 132
N
Sbjct: 131 N 131
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 7e-07
Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFT--VWDVGG 70
+E +++++G GK+ + + G V PTI + + VE + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAG 60
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
++ + Y +N QG V + + + + R+++ R+ + +++ ++LV NK
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV--PMILV-GNK 117
Query: 128 QDLPN 132
DL +
Sbjct: 118 CDLED 122
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-07
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+++L + + I TIG F + TVE + + +WD GQ+
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDL 130
+ R + Y++ T G+I V D E+ + R L+E D ++ NK D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSA----ESFVNVKRWLHEINQNCDDVCRILVGNKNDD 125
Query: 131 PN 132
P
Sbjct: 126 PE 127
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-07
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ 71
E+++ + G GK+ ++ + + PT+ T++ + +S + D GQ
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 86
Query: 72 DKIRPLWR-HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
+ + R + + +G + V D DR + V+ ++ L + + ++LV NK
Sbjct: 87 E--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV--TLILV-GNK 141
Query: 128 QDLPN 132
DL +
Sbjct: 142 ADLDH 146
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++++VG + GKT ++ + K G TIG F ++T+E K + +WD GQ+
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + + Y+++ G I D R V +++ + + V L+ NK D
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKSD 145
Query: 130 LPN 132
L
Sbjct: 146 LSE 148
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGG 70
KK ++I++VG A GKT +L GEI T +PT+ N ++Y + +WD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 71 Q---DKIRPLWRHYFQNTQGLI--FVVDSND 96
Q D++RPL + ++ ++ F V++
Sbjct: 81 QEEYDRLRPL---SYADSDVVLLCFAVNNRT 108
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
+ +++++G GKT++ ++ GE PT+ ++ + V + D G
Sbjct: 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAG 81
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
QD+ L + G + V + +LH + + V+LV NK
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV--PVVLV-GNK 138
Query: 128 QDL 130
DL
Sbjct: 139 ADL 141
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-06
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 71
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + LLV
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 129
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 130 -GNKSDLED 137
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 57
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + LLV
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 115
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 116 -GNKSDLED 123
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-06
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNISFTVWDVGGQD 72
+I+++G A+GKT++ TIG F + + N++ +WD+GGQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ Y QG++ V D + + + + + ++ E E + V LV NK D
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKID 126
Query: 130 LPN 132
L +
Sbjct: 127 LEH 129
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 67
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + L+
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE---NVPFLL 124
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 125 VGNKSDLED 133
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 21/129 (16%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
A + ++ + VG A GKT +L T +PT+ N V ++ +WD
Sbjct: 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-----VL 121
GQ +++RPL ++ I + + EL+ ++
Sbjct: 65 GQEDYNRLRPL---SYRGADVFILAFSLISKASYENVSKKWIP-----ELKHYAPGVPIV 116
Query: 122 LVFANKQDL 130
LV K DL
Sbjct: 117 LV-GTKLDL 124
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G AGK++++ + + + TIG F +T+ + F +WD GQ++
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ I V D ++ A+ EL N + V+ + NK DL
Sbjct: 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDLL 130
Query: 132 N 132
+
Sbjct: 131 D 131
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-06
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVG 69
K ++ + VG A GKT +L + T IPT+ N V + ++ +WD
Sbjct: 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQ ++RPL ++ + + + L ++LV
Sbjct: 66 GQEDYSRLRPL---SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV-GT 121
Query: 127 KQDLPN 132
K DL +
Sbjct: 122 KLDLRD 127
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--------KNISFTVWDVGG 70
++L++G GK+ + E G Y + S V+D+
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-----HTYDRSIVVDGEEASLMVYDIWE 58
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
QD R L H + V D+ ++ E R +L R D++ ++LV NK
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV--PIILV-GNK 115
Query: 128 QDL 130
DL
Sbjct: 116 SDL 118
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-06
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++++VG GK+T+ + + + ++ V+D+ Q
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 74 IRPLWR-HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ H Q + V DR +V E L +L V+LV NK D
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL--PVILV-GNKSD 120
Query: 130 LPN 132
L
Sbjct: 121 LAR 123
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-06
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+++VG A GK++++ + G TIG F ++ +++ +WD GQ++
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ + Y++ Q + V + DR + + R+++ + D + NK DL
Sbjct: 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLL 122
Query: 132 N 132
+
Sbjct: 123 D 123
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-06
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ--- 71
+I++VG GKT +L+ +PT+ N ++ + I ++WD G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 72 DKIRPLWRHYFQNTQGLI--FVVDSND 96
D +RPL + ++ ++ F + +
Sbjct: 69 DNVRPL---SYPDSDAVLICFDISRPE 92
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFT--VWDVG 69
F E+++ +VG ++GK+ ++++ G V P G + + S+ + D G
Sbjct: 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEG 75
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G +++ + ++FV D V L N E+ ++LV
Sbjct: 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV--PMVLV-GT 127
Query: 127 KQDLPNA 133
+ + A
Sbjct: 128 QDAISAA 134
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-05
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 37 LKLGEIVTTIPTIGFNVETV-EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95
L T + I F+ + + ++DVGGQ R W H F+ +IF +
Sbjct: 158 LYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217
Query: 96 DRDRVVEARDELHRM----------LNEDELRDAVLLVFANKQDL 130
+ D+ + ++ +RM L + ++F NK D+
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ--- 71
+I++VG GKT +L+ +PT+ N ++ + I ++WD G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 72 DKIRPLWRHYFQNTQGLI--FVVDSND 96
D +RPL + ++ ++ F + +
Sbjct: 90 DNVRPL---SYPDSDAVLICFDISRPE 113
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 10 SKLFAKKEMRI--LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISF 63
L+ + +R ++VG A GKT +L E +PT+ N V+ K +
Sbjct: 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVEL 75
Query: 64 TVWDVGGQ---DKIRPLWRHYFQNTQGLIFVVDSNDRD 98
+WD GQ D++RPL + +T ++ + D
Sbjct: 76 ALWDTAGQEDYDRLRPL---SYPDTDVILMCFSVDSPD 110
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-05
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ---D 72
+++VG GKT +L L T +PT+ N E + + ++WD G D
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 73 KIRPLWRHYFQNTQGLI--FVVDSND 96
+RPL + ++ ++ F + +
Sbjct: 90 NVRPL---CYSDSDAVLLCFDISRPE 112
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-05
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 21/132 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY------------KNISF 63
+ L +G GKT++LY+ G+ I T+G F + V Y + I
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAV 120
+WD G ++ R L +F++ G + + D + V +L + +
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE---NPD 129
Query: 121 LLVFANKQDLPN 132
+++ NK DL +
Sbjct: 130 IVLCGNKSDLED 141
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-05
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 21/141 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ-- 71
++ ++VG A GKT +L +PT+ + TV K ++D GQ
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 72 -DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFA 125
D++RPL + T + + ++E EL++ LL+
Sbjct: 79 YDRLRPL---SYPMTDVFLICFSVVNPASFQNVKEEWVP-----ELKEYAPNVPFLLI-G 129
Query: 126 NKQDLPNAMNAAEITDKLGLH 146
+ DL + + +
Sbjct: 130 TQIDLRDDPKTLARLNDMKEK 150
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 29/149 (19%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
+ ++ ++VG A GKT+++ T IPT N V +V+ + + + D
Sbjct: 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 70 GQ---DKIRPLWRHYFQNTQGLI--FVVDSNDRDRVVEARDELHRMLN--EDELRDA--- 119
GQ DK+RPL + NT + F V S + E+R
Sbjct: 77 GQDEFDKLRPL---CYTNTDIFLLCFSVVS---------PSSFQNVSEKWVPEIRCHCPK 124
Query: 120 --VLLVFANKQDLPNAMNAAEITDKLGLH 146
++LV + DL + DK
Sbjct: 125 APIILV-GTQSDLREDVKVLIELDKCKEK 152
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ 71
+ +++++VG GKT++L G + PT+ + ++ K + +WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 72 ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
D++RPL ++ + L+ D + + + +N + +++V K
Sbjct: 93 DDYDRLRPL---FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV-GCKT 148
Query: 129 DL 130
DL
Sbjct: 149 DL 150
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-05
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ---D 72
+++VG A GKT +L + +PT+ N V+ K + +WD GQ D
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
++RPL + +T ++ + D + ++ + ++LV NK+DL
Sbjct: 88 RLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRQ 143
Query: 133 AMNAAEITDKLGLH 146
+ K+
Sbjct: 144 DEHTRRELAKMKQE 157
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-05
Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 21/145 (14%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVG 69
+ + ++ ++VG A GKT +L F V+ K ++ +WD
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-----VL 121
GQ D++RPL + T + R + + E+R ++
Sbjct: 62 GQEDYDRLRPL---SYPQTDVSLICFSLVSPASFENVRAKWYP-----EVRHHCPNTPII 113
Query: 122 LVFANKQDLPNAMNAAEITDKLGLH 146
LV K DL + + E + L
Sbjct: 114 LV-GTKLDLRDDKDTIEKLKEKKLT 137
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYKN------------IS 62
+++L +G GKTT LY+ + I T+G F + V Y +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDA 119
+WD GQ++ R L +F++ G + + D + V +L + +
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE---NP 142
Query: 120 VLLVFANKQDLPN 132
+++ NK DLP+
Sbjct: 143 DIVLIGNKADLPD 155
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 19 RILMVGLDAAGKTTIL--YKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVW--DVG 69
++ +VG GK+ ++ + K + + T G V V +S ++ D
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G D + Y+ I V D + + + L + E +LV AN
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV-AN 140
Query: 127 KQDLPN 132
K DLP
Sbjct: 141 KTDLPP 146
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 5e-04
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGG- 70
+ +++ G GK+T+L L + + + P T G NV E + + D G
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
Query: 71 -----QDKIRPLWRHYFQN----TQGLIFVVD-SNDRDRVVEARDELHRMLNEDELRDAV 120
++ + +I++ D S +E + L ++ E +D
Sbjct: 225 LDRPISERNEIE-KQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFKDLP 282
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
LV NK D+ + N + ++++ A G G+
Sbjct: 283 FLVVINKIDVADEENIKRLEKF-----VKEKGLNPIKISALKGTGIDL 325
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 181 | |||
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.98 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.98 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.98 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.97 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.97 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.97 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.97 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.97 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.97 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.97 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.97 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.97 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.97 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.97 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.97 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.97 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.97 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.97 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.97 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.97 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.97 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.97 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.97 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.97 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.97 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.97 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.96 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.96 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.96 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.96 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.96 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.96 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.96 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.96 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.96 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.96 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.92 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.95 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.95 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.95 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.94 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.94 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.94 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.94 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.94 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.93 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.93 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.93 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.93 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.92 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.92 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.92 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.92 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.91 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.91 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.91 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.91 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.91 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.91 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.91 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.9 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.9 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.9 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.9 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.9 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.9 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.9 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.9 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.9 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.89 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.89 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.89 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.89 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.89 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.88 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.88 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.88 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.88 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.88 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.88 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.88 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.88 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.88 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.87 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.87 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.87 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.87 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.87 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.87 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.86 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.86 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.86 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.85 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.85 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.85 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.85 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.84 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.84 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.84 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.83 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.83 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.82 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.81 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.81 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.81 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.8 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.8 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.79 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.79 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.79 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.78 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.76 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.76 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.76 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.75 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.74 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.71 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.71 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.7 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.7 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.69 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.69 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.69 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.68 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.67 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.63 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.62 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.62 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.62 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.6 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.59 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.59 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.53 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.48 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.46 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.34 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.31 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.09 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.06 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.03 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.02 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.01 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.0 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.98 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.91 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.88 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.81 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.68 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.65 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.39 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.36 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.34 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.34 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.23 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.22 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.0 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.93 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.89 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.86 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.76 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.62 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.59 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.54 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.5 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.42 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.41 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.41 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.4 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.39 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.38 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.37 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.37 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.35 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.34 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.33 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.28 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.27 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.27 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.26 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.26 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.25 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.25 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.23 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.23 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.22 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.22 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.2 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.2 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.2 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.19 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.19 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.18 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.17 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.16 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.16 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.15 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.14 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.13 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.13 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.13 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.12 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.12 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.12 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.11 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.11 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.1 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.09 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.09 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.09 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.09 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.09 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.09 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.08 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.08 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.08 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.07 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.06 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.06 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.06 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.06 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.05 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.05 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.05 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.04 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.04 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.03 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.03 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.03 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.02 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.02 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.02 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.01 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.01 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.01 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.01 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.99 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.99 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.99 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.99 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.99 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.98 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.98 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.98 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.97 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.96 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.96 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.96 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.96 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.96 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.95 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.95 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.95 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.94 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.94 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.94 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.94 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.94 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.93 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.93 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.91 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.9 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.9 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.89 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.88 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.88 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.87 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.87 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.85 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.85 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.84 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.84 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.83 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.83 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.82 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.82 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.78 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.77 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.77 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.76 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.76 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.75 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.75 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.75 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.74 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.74 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.74 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.74 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.74 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.74 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.74 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.73 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.72 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.72 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.7 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.7 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.7 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.69 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.69 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.69 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.69 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.69 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.69 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.68 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.68 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.68 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.68 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.66 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.66 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.63 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.63 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.61 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.59 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.59 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.57 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.56 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.56 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.53 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.53 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.52 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.52 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.5 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.5 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.48 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.48 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.48 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.47 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.47 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.47 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.45 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.45 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.45 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.42 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.41 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.39 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.39 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.39 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.36 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.35 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.34 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.32 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.31 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.3 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.29 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.29 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.27 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.26 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.23 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.22 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.21 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.21 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.2 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.2 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.19 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.18 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.18 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.17 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.17 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.15 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.13 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.13 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.13 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.12 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.12 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.12 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.11 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.09 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.08 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.05 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.02 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.0 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 95.99 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.97 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.96 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.95 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 95.95 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.95 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.94 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.94 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.93 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.93 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 95.92 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.9 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.9 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.88 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.88 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.87 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.86 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.86 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.85 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.84 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.82 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.82 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.8 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.77 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.76 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.76 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.75 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 95.72 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.72 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.71 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.71 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.7 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.7 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.68 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.63 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.62 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.62 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 95.62 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.61 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 95.55 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.53 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 95.51 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.5 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 95.44 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.44 |
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=219.90 Aligned_cols=180 Identities=52% Similarity=0.974 Sum_probs=158.3
Q ss_pred CcchHHHHHH--hhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 1 MGLSFTKLFS--KLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 1 m~~~~~~~~~--~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
||+.++++++ +.+. ++.++|+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||++++...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 8887877777 6777 789999999999999999999999988887788988888888889999999999999999999
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
+..+++.+|++++|+|+++++++.....++...+......+.|+++|+||+|+.+....+++...+....+...++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999988887655568999999999999887777778777766666667889999
Q ss_pred cccCCCCCHHHHHHHHHHHhhhc
Q 030193 158 TCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|||+++.|++++++++.+.+.++
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999988654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=217.55 Aligned_cols=180 Identities=57% Similarity=1.008 Sum_probs=156.8
Q ss_pred CcchHHHHHHhhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccc
Q 030193 1 MGLSFTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 79 (181)
||+++++.+++.+. ++.++|+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||++++...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89999999998887 89999999999999999999999998887778888888888888899999999999999999999
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++.+|++++|+|++++.++.....++...+......+.|+++|+||+|+.+....+++...+....+...++++++||
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999998887754456899999999999988777778877777666666778999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|++|.|+++++++|.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999987653
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=218.52 Aligned_cols=178 Identities=47% Similarity=0.885 Sum_probs=153.8
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||..++++++ .+..+.++|+++|++|+|||||+++|.++.+....||.+.....+...+..+++||+||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8999999988 788899999999999999999999999888777788888888888889999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++++|++++|+|++++++++....++..+.......+.|+++|+||+|+.+....+++...+....++..++++++|||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999988877544467999999999999877677777776665555667789999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|+++++++|.+.+..
T Consensus 160 ~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=212.90 Aligned_cols=178 Identities=47% Similarity=0.879 Sum_probs=147.1
Q ss_pred CcchHHHHHHhhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccc
Q 030193 1 MGLSFTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 79 (181)
|| +++ .+.+.+. .+.++|+++|++|+|||||++++.+.......||.+.....+...+..+++||+||++++...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 67 554 5555555 78999999999999999999999988865778888888888888999999999999999999999
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++++|++++|+|++++.++.....++...+......++|+++|+||+|+.+....+++...+....+...++++++||
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999998887765556899999999999988777777777666555556788999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|++|.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999987653
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=215.98 Aligned_cols=174 Identities=81% Similarity=1.318 Sum_probs=150.2
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccccc
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
.++++.+.++.++|+++|++|+|||||++++.++.+....||.+.....++..+..+++||+||++++...+..+++++|
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 44566777889999999999999999999999988887788888888888889999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++|+|+++++++.....++..++......++|+++|+||+|+.+....+++...+....+...++++++|||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999999988877655568999999999999877777788887777666677889999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030193 167 YEGLDWLSNNIATK 180 (181)
Q Consensus 167 ~~~~~~i~~~l~~~ 180 (181)
++++++|.+.+.++
T Consensus 179 ~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 179 YDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988653
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=204.16 Aligned_cols=166 Identities=57% Similarity=1.015 Sum_probs=149.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999999988888898888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
+++.++.....++...+......++|+++|+||+|+.+....+++...+....+...+++++++||++|.|++++++++.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999998888765446899999999999988777777877777666667788999999999999999999999
Q ss_pred HHhhhc
Q 030193 175 NNIATK 180 (181)
Q Consensus 175 ~~l~~~ 180 (181)
+.+.++
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 988653
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=205.76 Aligned_cols=163 Identities=91% Similarity=1.400 Sum_probs=144.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999998888778898888888888899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+++.....++..+.......+.|+++|+||+|+.+....+++...+....++..++++++|||++|.|++++++++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999998887765556899999999999987777777877777666666788999999999999999999999987
Q ss_pred hhc
Q 030193 178 ATK 180 (181)
Q Consensus 178 ~~~ 180 (181)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=209.48 Aligned_cols=171 Identities=47% Similarity=0.844 Sum_probs=147.5
Q ss_pred HHhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccccc
Q 030193 9 FSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 9 ~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
+.+... ...++|+++|++|||||||++++.+..+....||.+.....+...+..+++||+||++.++..+..+++.+|
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 85 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTD 85 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 344444 678999999999999999999999998777788888877788888999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++|+|++++.++.....++...+......++|+++|+||+|+.+....+++...+....+...++++++|||++|.|+
T Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 99999999999999999988888776544568999999999999877777777776665555666789999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++++++.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 166 QDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=204.45 Aligned_cols=162 Identities=38% Similarity=0.617 Sum_probs=139.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||+++++..+..+++.+|++++|+|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 56789999999999999999999999888778888888888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-------cCCcceEEEEcccCCCCCHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-------LRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~S~~~~~~i~ 167 (181)
+++++|+....++...+......++|+++|+||+|+.+....+++.+.+.... ....++++++|||++|.|++
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 180 (190)
T 1m2o_B 101 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 180 (190)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHH
T ss_pred CChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHH
Confidence 99999999999988887654446899999999999987666777776655432 23356789999999999999
Q ss_pred HHHHHHHHH
Q 030193 168 EGLDWLSNN 176 (181)
Q Consensus 168 ~~~~~i~~~ 176 (181)
+++++|.+.
T Consensus 181 ~l~~~l~~~ 189 (190)
T 1m2o_B 181 EAFQWLSQY 189 (190)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999999865
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=203.86 Aligned_cols=163 Identities=48% Similarity=0.879 Sum_probs=143.3
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
..+.++|+++|++|+|||||+++|.+..+....+|.+.....+...+..+++||+||++++...+..+++.+|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 36789999999999999999999999998777788888888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
++++.+++....++...+......++|+++|+||+|+.+....+++...+....+...++++++|||++|.|+++++++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999888775444689999999999998776777777777666666678899999999999999999999
Q ss_pred HHH
Q 030193 174 SNN 176 (181)
Q Consensus 174 ~~~ 176 (181)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=204.24 Aligned_cols=165 Identities=30% Similarity=0.675 Sum_probs=145.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.+.++|+++|++|+|||||+++|.+..+. ...+|.+..+..+...++.+++||+||++++...+..+++.+|++++|+|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 99 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD 99 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence 56899999999999999999999998876 56788888888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
+++++++.....++..++......++|+++|+||+|+.+....+++...+....+...++++++|||++|.|+++++++|
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 100 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179 (188)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999888775444689999999999998776667777776665556677899999999999999999999
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 180 ~~~~~~ 185 (188)
T 1zd9_A 180 IQHSKS 185 (188)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 998764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=205.96 Aligned_cols=169 Identities=36% Similarity=0.646 Sum_probs=143.0
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEE
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
..+.....+|+++|++|||||||+++|.+..+... .+|.+.....++...+.+++||+||++++...+..+++.+|++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34457889999999999999999999999987653 7889888888889999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEccc
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCA 160 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~ 160 (181)
|+|+|++++.+|.....|+..++..... .++|+++|+||+|+.+....+++...+....+ +..++++++|||
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 170 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG 170 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence 9999999999999999998888764221 27899999999999888777788777765544 557789999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++|++|.+.+.+
T Consensus 171 ~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 171 LKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=216.21 Aligned_cols=160 Identities=17% Similarity=0.344 Sum_probs=121.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+.+.+||+++|++|||||||+++|+.+.|. .+.||.+..+.. +.. ..+.++||||+|+++|+..+..|++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 357899999999999999999999999887 457787765433 333 347899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|||++++.+|.++..|+..+.... .+++|++||+||+|+.+.. ..++... .++..+++|++|||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-----HHHHhCCeeEEEeCCCCcCH
Confidence 99999999999999999988765533 3679999999999997542 2222211 12223457999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++|+.|++.+..
T Consensus 164 ~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 164 KQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=203.79 Aligned_cols=165 Identities=29% Similarity=0.611 Sum_probs=133.0
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
...+.++|+++|++|||||||++++.++.+....||.+.....+...+..+++|||||+++++..+..+++.+|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 34667899999999999999999999988877778887777788888999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------cC---CcceEEEEccc
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LR---QRHWYIQSTCA 160 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~S~ 160 (181)
|++++++|.....|+...+......++|+++|+||+|+.+....+++........ +. ..++++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999998887754446899999999999987666667666554322 11 24678999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 030193 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l 177 (181)
++|.|+++++++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=200.07 Aligned_cols=165 Identities=44% Similarity=0.796 Sum_probs=141.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-c-ccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-I-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+.++|+++|++|+|||||+++|.+.. + ....+|.+.....+...+..+++||+||++++...+..+++++|++++|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI 98 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 578999999999999999999999887 3 35677888887888888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.++.....++..++..... .++|+++|+||+|+.+....+++........+...++++++|||++|.|+++++
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHH
Confidence 999999999999988888776443 579999999999998776777777766555555567899999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
++|.+.+.+
T Consensus 179 ~~l~~~i~~ 187 (190)
T 2h57_A 179 DWLQDQIQT 187 (190)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 999998754
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=215.56 Aligned_cols=167 Identities=91% Similarity=1.388 Sum_probs=148.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
..+.++|+++|++|+|||||+++|.+..+....||.+.....++..++.+++|||||++.+...+..+++.+|++|+|||
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999998877789999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
++++.+|.....++...+......++|+++|+||+|+.+....+++...+....+...+++++++||++|.|++++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999998887666789999999999999888888888888888777888999999999999999999999
Q ss_pred HHHhhhc
Q 030193 174 SNNIATK 180 (181)
Q Consensus 174 ~~~l~~~ 180 (181)
.+.+.++
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=189.56 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=105.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEE-E--EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.+||+++|++|+|||||++++.+..+....++.+.... . ++...+.+++||++|++++...+..+++.+|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776544444443332 2 22345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++++.++.....|+..+.......++|+++|+||+|+.+... .++... + ....+++++++||++|.|++++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-C----AVVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH-H----HHHTTCEEEECBGGGTBSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH-H----HHHhCCcEEEeccCCCCCHHHHHH
Confidence 999999999999988887765556899999999999975432 222211 1 112245899999999999999999
Q ss_pred HHHHHhhhc
Q 030193 172 WLSNNIATK 180 (181)
Q Consensus 172 ~i~~~l~~~ 180 (181)
++.+.+.++
T Consensus 157 ~l~~~~~~~ 165 (166)
T 3q72_A 157 GVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=193.76 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=124.4
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccc
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 85 (181)
+..+..+.+||+++|++|+|||||+++|.+..+.. ..+|.+..+. .+....+.+++||+||++++...+..+++.+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34445688999999999999999999999988763 4455554432 2334668999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++... + ....+++++++||++|
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-L----AESWGATFMESSAREN 171 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECCTTCH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-H----HHHhCCeEEEEeCCCC
Confidence 99999999999999999998888877655556799999999999875432 222211 1 1122457999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030193 164 EGLYEGLDWLSNNIATK 180 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~~ 180 (181)
.|++++|++|.+.+.++
T Consensus 172 ~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-32 Score=187.71 Aligned_cols=163 Identities=21% Similarity=0.410 Sum_probs=124.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++|+++|++|+|||||++++.+..+. ...|+.+... ..+... .+.+++||+||++++...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 589999999999999999999998875 4556665443 334443 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.....++........+...+++++++||++|.|++++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999988888776665432 25799999999999875421111100000111122345899999999999999999
Q ss_pred HHHHHhhhc
Q 030193 172 WLSNNIATK 180 (181)
Q Consensus 172 ~i~~~l~~~ 180 (181)
+|.+.+.+|
T Consensus 162 ~l~~~i~~k 170 (170)
T 1ek0_A 162 GIGEKIPLK 170 (170)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHhhC
Confidence 999887654
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.6e-32 Score=187.70 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=125.8
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.++.+. ...+|.+..+ ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 356899999999999999999999987765 4456665544 2334444 78899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHH
Confidence 999999999999998888777665444679999999999986543 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (181)
T 3t5g_A 158 DVFRRIILEAEK 169 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=183.19 Aligned_cols=157 Identities=14% Similarity=0.240 Sum_probs=121.4
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+...+||+++|++|||||||+++++++.+.. ..+|.+.....+...+ +.+++||++|+++++ +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 44678999999999999999999999998764 4455433333455555 678899999998887 678899999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCccCCc-ceEEEEcccCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQR-HWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~ 164 (181)
+|||++++.+|+.+..|+..+.......++|+++|+||+|+.. ....++..... +.. .+++++|||++|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-----TDLKRCTYYETCATYGL 165 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHTTTCEEEEEBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH-----HHcCCCeEEEecCCCCC
Confidence 9999999999999988887776654445789999999999842 12222222211 111 2579999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030193 165 GLYEGLDWLSNNIAT 179 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~ 179 (181)
|++++|+++.+.+.+
T Consensus 166 gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 166 NVERVFQDVAQKVVA 180 (184)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=182.22 Aligned_cols=160 Identities=15% Similarity=0.113 Sum_probs=114.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccce--EEEEEECC--EEEEEEEcCCCCC--cccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ISFTVWDVGGQDK--IRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~--~~~~~~~~~~~~d~~ 88 (181)
+..++|+++|++|+|||||+++|.+..+....++.+.. ...+...+ +.+++||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 45789999999999999999999998876544544443 23344444 5889999999987 566677888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|+|++++.+|.....|+..+.......++|+++|+||+|+.+... .++... + ....++++++|||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-C----AVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-H----HHHcCCeEEEEecCCCCCH
Confidence 99999999999999988877766543345799999999999976432 222221 1 1122458999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+..
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=188.63 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=121.6
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccccE
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
......+||+++|++|+|||||+++|.+..+.. +.+|.+..+. .++...+.+++||++|++++...+..+++++|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 344678999999999999999999999988764 4667665543 233455899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCccCCcce
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (181)
+|+|||++++.+|......|...+.... .++|+++|+||+|+.+. ...++... .++..++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~ 175 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-----IAKQLGA 175 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-----HHHHHTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-----HHHHcCC
Confidence 9999999999999985444444444322 57999999999999652 22222111 1122244
Q ss_pred -EEEEcccCCCCC-HHHHHHHHHHHhhh
Q 030193 154 -YIQSTCATSGEG-LYEGLDWLSNNIAT 179 (181)
Q Consensus 154 -~~~~~S~~~~~~-i~~~~~~i~~~l~~ 179 (181)
++++|||++|.| ++++|+++.+.+..
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 799999999998 99999999998754
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=180.33 Aligned_cols=159 Identities=20% Similarity=0.364 Sum_probs=125.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.++.+.. ..++.+... ..+... .+.+++||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 567999999999999999999999887763 445555443 333333 578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... .+++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999998888777665432 2579999999999986532 223322211 2234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=182.86 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=123.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.+..+. ...+|.+..+.. +.. ..+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999998776 345565544322 222 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCC-cceEEEEcccCCCCCHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~ 168 (181)
+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..... +. .+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTSCEEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHH-----HHccCCcEEEecCCCCCCHHH
Confidence 99999999988888777665533335799999999999975432 22222211 11 145899999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
++++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998774
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-32 Score=185.34 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=123.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
..++|+++|++|+|||||++++.+..+.. ..+|.+.... .+...+ +.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999988753 4455554432 234443 6899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence 9999999999988877776654433579999999999996532 233332221 123457999999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
++++.+.+.++
T Consensus 158 ~~~l~~~i~~~ 168 (168)
T 1u8z_A 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999988653
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-32 Score=187.64 Aligned_cols=159 Identities=20% Similarity=0.367 Sum_probs=98.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...||.+..+ ..+...+ +.+++||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999988765 4456655443 3455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999999999888877665442 22579999999999997542 223322211 1234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=185.40 Aligned_cols=162 Identities=18% Similarity=0.272 Sum_probs=128.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+..+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+...+ +.+++||+||++++...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 44678999999999999999999999987763 4556655443 344444 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|+|++++.++.....|+..++......++|+++|+||+|+.+... .++... + ....+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-F----GASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHcCCeEEEecCCCCCCH
Confidence 99999999999999988888775544446799999999999975332 222221 1 1123468999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=185.07 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=125.9
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
....+||+++|++|+|||||+++|.+..+. ...++.+..+ ..+...+ +.+++||+||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 356899999999999999999999988766 4455555443 2233333 56788999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccC-CCCCH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCAT-SGEGL 166 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~i 166 (181)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||+ ++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCCCH
Confidence 999999999999998887777654334679999999999987632 222222211 1123469999999 99999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-31 Score=184.82 Aligned_cols=160 Identities=23% Similarity=0.292 Sum_probs=123.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCcccceEEE-----EEECCEEEEEEEcCCCCCccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVET-----VEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~~-----~~~~~~~~~~~d~~g~~~~~~ 76 (181)
..+..+||+++|++|+|||||++.+.+.....+ .||.+..+.. ++...+.+++||+||++++..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 346789999999999999999987766544332 2344433322 222457899999999999999
Q ss_pred ccccccccccEEEEEEECC------CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCC
Q 030193 77 LWRHYFQNTQGLIFVVDSN------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (181)
.+..+++++|++++|||++ +..++..+..|+... . ....++|+++|+||+|+.+....++.......
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----- 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-G-LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----- 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-T-CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-c-cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----
Confidence 9999999999999999998 455666666666655 2 23368999999999999887666666655433
Q ss_pred cce-EEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 151 RHW-YIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 151 ~~~-~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.++ +++++||++|.|+++++++|.+.+.+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 344 79999999999999999999998764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=184.69 Aligned_cols=159 Identities=18% Similarity=0.358 Sum_probs=124.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+... .+.+++||+||++++...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 45789999999999999999999998875 4455655443 333333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+... .++..... +..+++++++||++|.|++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINVK 173 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 999999999998887776655432 235799999999999975322 22222211 1223579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 174 ~l~~~l~~~i~~ 185 (189)
T 2gf9_A 174 QVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=182.87 Aligned_cols=161 Identities=19% Similarity=0.345 Sum_probs=125.3
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....++|+++|++|+|||||+++|.+..+.. ..++.+... ..+... .+.+++||+||++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34678999999999999999999999988763 345555433 334444 4689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++.++.....|+..+.... .+++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 999999999999988888777665432 2579999999999996543 233333221 12345899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 162 VKEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=182.62 Aligned_cols=160 Identities=22% Similarity=0.321 Sum_probs=124.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+++||+||++++...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 56799999999999999999999998876 445666555433 3333 4678999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceE-EEEcccCCCCC
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWY-IQSTCATSGEG 165 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~ 165 (181)
|+|++++.++......|...+... ..++|+++|+||+|+.+. ...++..... +..+++ ++++||++|.|
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-----QKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----HHHTCSCEEECBTTTTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----HhcCCCEEEEeecCCCCC
Confidence 999999999998766555555532 257999999999999753 2222222211 112233 89999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030193 166 LYEGLDWLSNNIATK 180 (181)
Q Consensus 166 i~~~~~~i~~~l~~~ 180 (181)
++++|+++.+.+.++
T Consensus 175 i~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 175 LNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=182.39 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=114.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc---ccCcccceEEEEEECC--EEEEEEEcCCCCCccc-ccccccccccEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~-~~~~~~~~~d~~i~ 90 (181)
.+||+++|++|+|||||+++|.+..+.. ..++.+.....+...+ +.+++||+||++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998766542 1223333334444444 7889999999998876 67778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++.... .+..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH-----HHHcCCcEEEecCccCCCHHH
Confidence 99999999999999998888765444579999999999987432 22222221 112345899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030193 169 GLDWLSNNIATK 180 (181)
Q Consensus 169 ~~~~i~~~l~~~ 180 (181)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-31 Score=179.85 Aligned_cols=159 Identities=23% Similarity=0.406 Sum_probs=119.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|+|||||++++.+..+. ...++.+.. ...+... .+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999998875 345555533 3344444 3789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+|++++.++.....|+..+... ...++|+++|+||+|+.+... .++... + .+..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEA-L----AKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHH-H----HHHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHH-H----HHHcCCeEEEEECCCCCCHHHH
Confidence 99999999988887777665443 225799999999999954332 222221 1 1112357899999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
++++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=184.27 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=121.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEEC---CEEEEEEEcCCCCCccc-ccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~-~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||+++|++..+....+++......+... .+.+++|||||++++.. .+..+++.+|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 568999999999999999999999998876666666666666665 68999999999999988 78888999999999
Q ss_pred EEECCCcc-cHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------------------
Q 030193 91 VVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG----------------------- 144 (181)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----------------------- 144 (181)
|+|+++.. ++....++|...+.. ....++|+++|+||+|+.+....+++...+.
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99998753 466666777665432 1224789999999999987654433322111
Q ss_pred CCccC---------C--cceEEEEcccCCC------CCHHHHHHHHHHHh
Q 030193 145 LHSLR---------Q--RHWYIQSTCATSG------EGLYEGLDWLSNNI 177 (181)
Q Consensus 145 ~~~~~---------~--~~~~~~~~S~~~~------~~i~~~~~~i~~~l 177 (181)
..... . .+++|++|||++| .|++++|++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00111 1 1788999999999 99999999998753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=182.73 Aligned_cols=159 Identities=22% Similarity=0.399 Sum_probs=124.4
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.+..++|+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 366799999999999999999999998876 445555533 34555565 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|+|++++.++.....|+..+.... .++|+++|+||+|+.+... .++..... ...+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999999999887776665432 4799999999999875432 22221111 112346899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=184.07 Aligned_cols=159 Identities=21% Similarity=0.377 Sum_probs=121.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|.+.. ...+...+ +.+++||+||++++...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 56789999999999999999999998875 445665543 34455555 79999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcce-EEEEcccCCCCCH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHW-YIQSTCATSGEGL 166 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i 166 (181)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+. ...++..... +..++ ++++|||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCH
Confidence 9999999999988887776654432 357999999999999753 2333332221 12244 7999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 181 ~~l~~~l~~~i~~ 193 (201)
T 2hup_A 181 EEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=184.77 Aligned_cols=161 Identities=18% Similarity=0.383 Sum_probs=118.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceEEE--EEECC--EEEEEEEcCCCCCcccccccccccccE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+..++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +...+ +.+++||+||++++...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 366899999999999999999999998874 445666665532 34444 689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 999999999999888877766654422 2579999999999997643 222222211 12245789999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030193 166 LYEGLDWLSNNIATK 180 (181)
Q Consensus 166 i~~~~~~i~~~l~~~ 180 (181)
++++++++.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=182.57 Aligned_cols=162 Identities=20% Similarity=0.366 Sum_probs=127.6
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE---EEEEC-----------CEEEEEEEcCCCCCcccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYK-----------NISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~~~d~~g~~~~~~~ 77 (181)
..+..++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+... .+.+++||+||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3466899999999999999999999998875 44667666554 33333 468999999999999999
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+..+++.+|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... ...++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCE
Confidence 999999999999999999999998888877776554433579999999999997532 223322211 1123478
Q ss_pred EEcccCCCCCHHHHHHHHHHHhhh
Q 030193 156 QSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 156 ~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++||+++.|+++++++|.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-32 Score=190.75 Aligned_cols=165 Identities=19% Similarity=0.364 Sum_probs=116.4
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccc
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~ 85 (181)
+...+..++|+++|++|+|||||+++|++..+. ...++.+.. ...+...+ +.+++||+||++++...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 344467899999999999999999999998865 345555533 33344443 7899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC------C--CCHhHHHhhhCCCccCCcceEEEE
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN------A--MNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
|++++|+|++++.++.....|+..+.. ....++|+++|+||+|+.+ . ...++... + +...++++++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~ 175 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIED-AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-L----AMTYGALFCE 175 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHH-HC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-H----HHHHTCEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHH-hcCCCCCEEEEEECcccccccccccccccCHHHHHH-H----HHHcCCeEEE
Confidence 999999999999999888876654432 2224789999999999852 1 11111111 1 1123458999
Q ss_pred cccCCCCCHHHHHHHHHHHhhhcC
Q 030193 158 TCATSGEGLYEGLDWLSNNIATKA 181 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~~~ 181 (181)
+||++|.|+++++++|.+.+.++|
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~~~~ 199 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVKKRT 199 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC--
T ss_pred eeCCCCCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999998775
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=183.58 Aligned_cols=161 Identities=17% Similarity=0.301 Sum_probs=123.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--ceEEEEEECC---EEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.+.++|+++|++|+|||||+++|.+..+. ...||.+ .....+...+ ..+++||+||++.+...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 56799999999999999999999998875 3456665 3445566655 8999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++|+|++++.+++....|+..+.... ....+|+++|+||+|+.+.. ..++..... +..+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCC
Confidence 99999999999988876665543310 00234589999999997532 222222211 1224579999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030193 165 GLYEGLDWLSNNIATK 180 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~~ 180 (181)
|+++++++|.+.+.+.
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=184.56 Aligned_cols=160 Identities=20% Similarity=0.368 Sum_probs=125.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 56789999999999999999999998875 445555533 34455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.... ++..... ...+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Confidence 999999999998888876655432 2257999999999999764322 2221111 1123468999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=179.89 Aligned_cols=161 Identities=20% Similarity=0.320 Sum_probs=126.4
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..++.+||+++|++|+|||||+++|.+..+. ...++.+..... +.. ....+++||+||++++...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3367899999999999999999999998875 456666655433 322 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAIN 172 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcC
Confidence 99999999999999887776665432 23579999999999997522 333333322 23356899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 173 i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 173 IEELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=179.98 Aligned_cols=160 Identities=24% Similarity=0.394 Sum_probs=126.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+... ..+... .+.+++||+||++++...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45789999999999999999999998876 4456655443 334443 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++.... ++..+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF-----ARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHHH
Confidence 999999999998888877776554434579999999999996432 22222221 112346799999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
++++|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (195)
T 1x3s_A 168 AFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=178.48 Aligned_cols=163 Identities=13% Similarity=0.294 Sum_probs=124.5
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
....++|+++|++|+|||||++++.+..+. ...++.+... ..+...+ +.+++||+||++++...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 356799999999999999999999988865 4456666544 3444444 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++|+|++++.++.....|+..+... ....++|+++|+||+|+.+.. ..++...... ...+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 9999999999988887766655432 222578999999999997432 3333333221 0234579999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030193 165 GLYEGLDWLSNNIATK 180 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~~ 180 (181)
|++++++++.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=180.96 Aligned_cols=159 Identities=20% Similarity=0.344 Sum_probs=125.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 56799999999999999999999998876 3455555433 3445554 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++.... +...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 999999999998888777654432 22579999999999996432 22232221 12234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++++++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=183.06 Aligned_cols=161 Identities=20% Similarity=0.322 Sum_probs=125.0
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..+..++|+++|++|+|||||+++|.+..+.. ..++.+... ..+... .+.+++||+||++++...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34678999999999999999999999988763 445555433 334443 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++.++.....|+...... ...++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 99999999999998888776655432 22579999999999996532 223332221 12345899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++++++.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=181.13 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=122.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..+|..... ..+...+ +.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 357899999999999999999999988764 344443222 2333444 568899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+|++++.++.....|+..+.......++|+++|+||+|+.+.....+....+. ...+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999888887776644446899999999999975443222222111 1123468999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+++.+.+..
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=186.87 Aligned_cols=159 Identities=19% Similarity=0.326 Sum_probs=124.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|++..+. ...+|.+..+ ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45789999999999999999999998876 4556665444 3445544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... ...++++++|||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999998888776655432 22579999999999997532 222222211 1234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-31 Score=184.06 Aligned_cols=159 Identities=19% Similarity=0.323 Sum_probs=125.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+..+. .+.. ....+++||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45789999999999999999999998876 34556555443 2333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999998888777666543 33579999999999997532 222222211 1234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=176.30 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=117.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||++++.+..+. ...++.+.... .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988875 45566665443 3433 3468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.. ....++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRK-MLGNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 99999999999888877665433 222479999999999997532 223322211 1234588999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=179.37 Aligned_cols=159 Identities=21% Similarity=0.370 Sum_probs=124.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.+..+. ...++.+... ..+... ...+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999998865 3456655443 334444 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.. ...+..|+++|+||+|+.+... .++... + ....+++++++||+++.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKD-Y----ADSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHH-H----HHHcCCEEEEEeCCCCcCHH
Confidence 99999999999888776655543 3336799999999999975432 222222 1 11234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=183.07 Aligned_cols=161 Identities=22% Similarity=0.387 Sum_probs=122.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..+..++|+++|++|+|||||+++|++..+. ...++.+.. ...+...+ +.+++||+||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3466899999999999999999999988865 445555533 34555655 789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
+++|+|++++.++.....|+..+... ...++|+++|+||+|+..... .++... +. ...+++++++||+++.|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEA-LA----KELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTCSSCCSCHHHHHH-HH----HHHTCCEEECBTTTTBSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccccCHHHHHH-HH----HHcCCEEEEEeCCCCCCH
Confidence 99999999998888888776665442 224799999999999954322 222221 11 112346899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 170 ~~l~~~l~~~~~~ 182 (213)
T 3cph_A 170 NEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=178.07 Aligned_cols=159 Identities=18% Similarity=0.341 Sum_probs=124.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|.+... ..+... ...+++||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998875 3456655443 344444 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ..++..... +..+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999999988887766654432 478999999999987532 233332211 1234589999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
+++++|.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999987653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=186.10 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=120.4
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--ceEEEEEEC--CEEEEEEEcCCCCCccc-ccccccccc
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNT 85 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~~~d~~g~~~~~~-~~~~~~~~~ 85 (181)
.+....++|+++|++|||||||+++|.+.... ...+++. .....+... .+.+.+||++|++++.. .+..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 34467899999999999999999999764432 2333333 223334444 46889999999988765 677888999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|||++++.+|..+..|+..+.......++|+++|+||+|+.+.. ..++.... ++..++++++|||+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALH 172 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEEEBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHH-----HHHhCCEEEEEcCCCC
Confidence 9999999999999999999888776553333479999999999997542 22332221 1122357999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|++++|+++.+.+.+
T Consensus 173 ~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 173 HNTRELFEGAVRQIRL 188 (195)
T ss_dssp BSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=179.17 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=117.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
...+||+++|++|+|||||+++|.++.+..+.||.+..+ ..+...+ +.+++||+||+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 457999999999999999999999998877677766443 2344443 6889999999977 4577889999999
Q ss_pred EECCCcccHHHHHHHHH--HHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 92 VDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~--~~~~~~~~~~~piivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
||++++.++.....|+. ..+......++|+++|+||+|+.+ ....++....... ..++++++|||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEeccccCC
Confidence 99999999999888632 333333335799999999999842 1223333221110 0246899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|+++.+.+.+
T Consensus 156 i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 156 VDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=180.55 Aligned_cols=160 Identities=17% Similarity=0.165 Sum_probs=121.9
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.+..+.. ..+|.+..+ ..+...+ +.+++||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3567899999999999999999999988763 455655443 2344443 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCccCCcce-E
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW-Y 154 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 154 (181)
+|+|++++.+|......|...+.... +++|+++|+||+|+.+.. ..++.... .+..+. +
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~ 168 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL-----AKEIGACC 168 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH-----HHHHTCSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH-----HHHcCCcE
Confidence 99999999999988744444333322 479999999999997532 11111110 111122 6
Q ss_pred EEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 155 IQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 155 ~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++|||++|.|+++++++|.+.+..
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 8999999999999999999988754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-31 Score=185.78 Aligned_cols=165 Identities=17% Similarity=0.241 Sum_probs=123.1
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEEC--CEEEEEEEcCCCCCccccccccccc
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~ 84 (181)
+++......++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+++||+||+++ ...+..+++.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 98 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRW 98 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence 33444467899999999999999999999998876 345565544422 3343 47899999999988 7778888999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+|++++|||++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..++++++|||++
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACT 173 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECCCc
Confidence 99999999999999998888777665543333579999999999997532 222222211 12245899999999
Q ss_pred CC-CHHHHHHHHHHHhhh
Q 030193 163 GE-GLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~-~i~~~~~~i~~~l~~ 179 (181)
|. |++++|++|.+.+.+
T Consensus 174 g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 174 GEGNITEIFYELCREVRR 191 (196)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 99 999999999998765
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=184.10 Aligned_cols=159 Identities=20% Similarity=0.359 Sum_probs=125.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 56799999999999999999999998876 3456655443 3445544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999999999888876665432 23579999999999997643 222222211 1234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=183.84 Aligned_cols=159 Identities=20% Similarity=0.321 Sum_probs=122.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||+++|.+..+.. ..++.+.. ...+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 467899999999999999999999988753 34554433 33455544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.+++....|+..+... ...++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999998888877665442 22579999999999996532 222222211 2234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=180.28 Aligned_cols=164 Identities=19% Similarity=0.275 Sum_probs=127.8
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCccccccccccccc
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
..+....++|+++|++|||||||+++|.+..+.. ..+|.+..+ ..+...+ +.+.+||+||++++...+..+++.+|
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3444678999999999999999999999888753 445555433 3344444 68999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++++|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCC
Confidence 999999999999999988887777664444579999999999997532 233332222 1234579999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030193 165 GLYEGLDWLSNNIAT 179 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~ 179 (181)
|+++++++|.+.+.+
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=184.48 Aligned_cols=162 Identities=20% Similarity=0.343 Sum_probs=121.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcc-ccccccccccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIR-PLWRHYFQNTQ 86 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~-~~~~~~~~~~d 86 (181)
+..+.+||+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 3357799999999999999999999988876 345555543 34455554 789999999999998 78889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCC-
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG- 163 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~- 163 (181)
++++|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++... + ....+++++++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-F----ADTHSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-H----HHHcCCEEEEEeCCcCC
Confidence 999999999999999888877776654434679999999999996542 2222221 1 1123457899999999
Q ss_pred --CCHHHHHHHHHHHhhh
Q 030193 164 --EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 --~~i~~~~~~i~~~l~~ 179 (181)
.|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887653
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=178.15 Aligned_cols=160 Identities=19% Similarity=0.292 Sum_probs=126.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..+|.+... ..+...+ +.+.+||+||++++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 567999999999999999999999888763 345554443 2344444 689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHH
Confidence 99999999999988887776654433579999999999986532 233333222 22345899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
++++|.+.+.+
T Consensus 171 l~~~l~~~i~~ 181 (187)
T 2a9k_A 171 VFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=183.82 Aligned_cols=159 Identities=18% Similarity=0.347 Sum_probs=124.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. ...++.+..+ ..+... .+.+++||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45789999999999999999999998875 4456665443 334333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+... .++..... +..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCHH
Confidence 999999999998888776665432 235799999999999976432 22222211 1123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=181.48 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=111.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE---EEEEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||++++.+..+.. ..+|.+..+ ..++...+.+++||+||++++...+..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 568999999999999999999999887653 345544222 1234456778899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------------HhHHHhhhCCCccCCcc-eEEEE
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRQRH-WYIQS 157 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (181)
|+|++++.++......|...+.... .++|+++|+||+|+.+... .++... ..+..+ .++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~ 159 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-----LKKLIGAPAYIE 159 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-----HHHHHTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-----HHHHcCCCEEEE
Confidence 9999999999988754444444322 3799999999999865421 111111 111123 37999
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|||++|.|++++++++.+.+.+
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=180.59 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=120.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+.. ..||.+..+ ..+...+ +.+++||+||++++...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 567899999999999999999999988763 345555443 2344444 689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------cCCcce-EEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~S~ 160 (181)
|+|++++.++......|...+.... +++|+++|+||+|+.+.....+......... ....+. ++++|||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 9999999999988655555544322 4799999999999975422221111111110 011223 7999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|+++++++|.+.+.+
T Consensus 182 ~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=184.54 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=119.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEE--ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+.+||+++|++|+|||||+++|.++.+. ...+|.+.... .+. ...+.+++||+||++++...+..+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 367899999999999999999999988876 34455543322 222 34467889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------cCCcc-eEEEEcc
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LRQRH-WYIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 159 (181)
+|+|++++.++......|...+.... .++|+++|+||+|+.+.....+......... .+..+ .++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 99999999999988755555554432 5799999999999876432222211111110 11112 3699999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 030193 160 ATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l 177 (181)
|++|.|++++++++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=187.93 Aligned_cols=160 Identities=19% Similarity=0.361 Sum_probs=124.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEE--ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. ...++.+... ..+. ...+.+++||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 57899999999999999999999988765 3344444333 3333 35689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.. ....++|+++|+||+|+.+.. ..++.... ....+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLL-----AEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence 99999999999888876665544 333579999999999986532 22222111 11224579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=180.78 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=120.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. +.||.+..+. .+.. ..+.+++||+||+++|...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 567999999999999999999999988763 4566654432 2332 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCccCCcc-eEE
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH-WYI 155 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~ 155 (181)
|+|++++.++......|...+.... +++|+++|+||+|+.+. ...++.... ++..+ +++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 158 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAATY 158 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH-----HHHcCCcEE
Confidence 9999999999888544444333322 47999999999999742 111211111 11112 479
Q ss_pred EEcccC-CCCCHHHHHHHHHHHhhhc
Q 030193 156 QSTCAT-SGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 156 ~~~S~~-~~~~i~~~~~~i~~~l~~~ 180 (181)
++|||+ ++.|++++|+.+.+.+.++
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 999999 6899999999999987654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=182.26 Aligned_cols=158 Identities=20% Similarity=0.377 Sum_probs=123.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEECC-------------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN------------------------------- 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~~------------------------------- 60 (181)
+..++|+++|++|+|||||+++|++..+. ...+|.+..+. .+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 56899999999999999999999998876 34556554432 233332
Q ss_pred --------EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 61 --------ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 --------~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
..+++||+||++.+...+..+++.+|++++|+|++++.++.....|+..+... .+.|+++|+||+|...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999999999999999999999999999998888777766553 2499999999999432
Q ss_pred -CCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 133 -AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
....++..... +..+++++++||++|.|+++++++|.+.+.++
T Consensus 162 ~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 22333433322 12345899999999999999999999987653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=177.15 Aligned_cols=159 Identities=16% Similarity=0.255 Sum_probs=123.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccce-EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+...+ ..+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999888653 34444432 23344444 5699999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++.++.....++..+.......+.|+++|+||+|+.+... .++.... .+..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL-----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHH-----HHHhCCCEEEecCCCCcCHHHH
Confidence 99999999999888887776644445799999999999865322 2222211 1112347899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-31 Score=181.08 Aligned_cols=159 Identities=18% Similarity=0.368 Sum_probs=124.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|++..+. ...++.+... ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988776 3455555433 3444544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||+++.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988887776654422 25799999999999875432 22222211 1234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=179.08 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=123.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+....+||+++|++|+|||||++++.+..+. ...||.+..+ ..+...+ +.+++||+||++++...+..+++.+|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 3466789999999999999999999998876 3455555443 3344443 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CccCCcce-EEEEc
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQRHW-YIQST 158 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 158 (181)
++|+|++++.++......|...+.... .++|+++|+||+|+.+.....+....... ..++..+. ++++|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999988655555554322 47999999999999764221111110000 00111233 79999
Q ss_pred ccCCCCCHHHHHHHHHHHhhh
Q 030193 159 CATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l~~ 179 (181)
||++|.|+++++++|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=180.55 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=123.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+.... .+... .+.+++||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 56899999999999999999999998865 44556554443 33333 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+|+|++++.++.....|+..+.... ...++|+++|+||+|+.+... .++...... ...+++++++||++|.|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCCC
Confidence 9999999999888877766554321 124689999999999975332 223322211 02345799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 162 VEQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=186.09 Aligned_cols=160 Identities=21% Similarity=0.357 Sum_probs=120.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|.+.. ...+...+ +.+++||+||++++...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 56799999999999999999999998876 344555533 34455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++.... +...+++++++||+++.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTF-----AQENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999888777665432 22579999999999997532 22222221 12234689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
+++++|.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=180.36 Aligned_cols=161 Identities=19% Similarity=0.340 Sum_probs=120.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 56789999999999999999999998875 345555433 34455544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+ ......++|+++|+||+|+.+... .++....... -.+++++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i-~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHH-HHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHH-HHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCHH
Confidence 999999999998887665443 333335799999999999975332 2222221111 024589999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
+++++|.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=189.33 Aligned_cols=160 Identities=21% Similarity=0.420 Sum_probs=124.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC------------CEEEEEEEcCCCCCcccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK------------NISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~~~d~~g~~~~~~~~~ 79 (181)
++.++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+... .+.+++||+||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 56799999999999999999999998875 33455554332 23332 57899999999999999999
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEE
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++|+|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..... +..++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 99999999999999999999988887776654433335799999999999975322 22222211 122357899
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|||+++.|+++++++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=182.62 Aligned_cols=159 Identities=21% Similarity=0.334 Sum_probs=118.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++++...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 56799999999999999999999988875 344555433 34455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++.... ++..++++++|||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRF-----AQENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888776654422 2579999999999996532 22232221 12234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=178.87 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=115.4
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.....++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+...+ +.+++||+||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 3467899999999999999999999998865 34566654432 344444 6788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCccCCcc-e
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRH-W 153 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~-~ 153 (181)
++|+|++++.++......|...+.... .++|+++|+||+|+.+.. ..++... + .+..+ +
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~ 169 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-L----AEEIKAA 169 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-H----HHhcCCc
Confidence 999999999999988744444333322 479999999999986521 1111111 0 11112 3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++++|||++|.|++++|+++.+.+.+
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999987753
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=185.25 Aligned_cols=160 Identities=22% Similarity=0.308 Sum_probs=122.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE--C--C-EEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY--K--N-ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~--~--~-~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
...+||+++|++|+|||||+++|++..+. ...+|.+........ . . +.+++||+||++.+...+..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 56799999999999999999999988765 335566655444332 1 1 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
++|+|++++.++.....|+..+... ...++|+++|+||+|+.+... ..+....+ ....+++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEV----LKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHH----TTTCCCEEEEEBTTTTBTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHH----HHHcCCcEEEEecCCCCCHH
Confidence 9999999999998887766554432 224689999999999976422 12222222 22345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+..
T Consensus 164 ~l~~~l~~~~~~ 175 (218)
T 4djt_A 164 LPFLHLARIFTG 175 (218)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=185.05 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=118.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|||||||+++|++..+. .+.+|.+..+. .+.. ..+.+++||++|++++... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 56799999999999999999999998876 44566664432 2333 3478999999999988875 678899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEccc-CCCCC
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA-TSGEG 165 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~ 165 (181)
|||++++.+|.....|+..+..... ..++|+++|+||+|+.+.. ..++..... +..++++++||| ++|.|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcccc
Confidence 9999999999998887766554211 1478999999999996532 222222211 122457999999 89999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|+.+.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=182.87 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=120.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+. ...||.+..+. .+.. ..+.+++||+||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46799999999999999999999988876 44566654432 2333 34799999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------CHhHHHhhhCCCccCCcc-eEEEEcc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----------NAAEITDKLGLHSLRQRH-WYIQSTC 159 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~S 159 (181)
|||++++.++......|...+.... +++|+++|+||+|+.+.. ..++.... ....+ .++++||
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~S 160 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL-----RKQIGAAAYIECS 160 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH-----HHHHTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH-----HHHcCCceEEEcc
Confidence 9999999999988744444444322 479999999999986532 12221111 11112 3799999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 030193 160 ATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~ 179 (181)
|++|.|++++|+++.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=179.09 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=121.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||+++|.+..+. ...+|.+... ..+... .+.+++||+||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 45789999999999999999999988875 3455554333 223333 4678899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CccCCcc-eEEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQRH-WYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~S~ 160 (181)
|+|++++.++......|...+.... .+.|+++|+||+|+.+.....+....... ...+..+ ++++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 9999999999988754444444322 37999999999998654211111111000 0111123 38999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++++++.+.+..
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=172.22 Aligned_cols=158 Identities=19% Similarity=0.291 Sum_probs=121.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... .+.+++||+||++++...+..+++.+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 5799999999999999999999887753 344544332 223333 467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++.++.....|+..+.......++|+++|+||+|+.+... .++..... +..+++++++|+++|.|++++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA-----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHH
Confidence 9999999988877776655433334799999999999876432 22222211 11234799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998765
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=182.03 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=120.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+.. +.+|.+..+. .+.. ..+.+++||+||+++|...+..+++.+|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 567999999999999999999999988763 4566654442 2332 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCccCCcc-eEE
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH-WYI 155 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~ 155 (181)
|||++++.+|......|...+.... .+.|+++|+||+|+.+. ...++.... ++..+ +++
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 179 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAATY 179 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH-----HHHcCCCEE
Confidence 9999999999888444444333322 47999999999999642 111111111 11112 479
Q ss_pred EEcccC-CCCCHHHHHHHHHHHhhhc
Q 030193 156 QSTCAT-SGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 156 ~~~S~~-~~~~i~~~~~~i~~~l~~~ 180 (181)
++|||+ ++.|++++|+.+.+.+.++
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 999999 6899999999999987654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=175.44 Aligned_cols=162 Identities=14% Similarity=0.248 Sum_probs=112.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEEC---CEEEEEEEcCCCCCcccccccccccccE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
....++|+++|++|+|||||++++.+..+. ...++.+.. ...+... ...+++||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356899999999999999999999998865 344555433 3344433 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+++|+|++++.++.....|+..+... ....++|+++|+||+|+.... ..++...... ...+++++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 99999999999998888777665432 122578999999999985431 2222222111 0124578999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|+++++++|.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=182.71 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=103.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||+++|.+..+.. ..+|....+ ..+... .+.+++||+||++++...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999988753 445554333 223333 4689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCccCCcce-EEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S~ 160 (181)
|+|++++.++......|...+.... .++|+++|+||+|+.+.....+...... ....+..+. ++++|||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 9999999999988754444444322 4789999999999976422211111000 001111233 8999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|+++++++|.+.+.+
T Consensus 191 ~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-30 Score=175.21 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=121.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.+..+. ...++.+..... +.. ..+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999998765 345555544332 222 336899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|++++.++.....++..+.... ...+.|+++|+||+|+.+.... ++... + ....+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-L----ARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-H----HHHhCCeEEEecCCCCcCHHH
Confidence 99999998888877776554321 1247899999999998654322 22111 1 112345899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030193 169 GLDWLSNNIATK 180 (181)
Q Consensus 169 ~~~~i~~~l~~~ 180 (181)
++++|.+.+..+
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999877643
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-30 Score=184.45 Aligned_cols=160 Identities=21% Similarity=0.345 Sum_probs=125.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEE--EE--CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|||||||+++|+.+.+. ...++.+...... .. ..+.+++||+||++.+...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 3467899999999999999999998766654 3456665444332 22 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+++|+|++++.++.....|+..+.... .++|+++|+||+|+.+.....+ .....+..++++++|||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999998888777665532 4789999999999976433221 112223345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+..
T Consensus 164 ~l~~~l~~~l~~ 175 (221)
T 3gj0_A 164 KPFLWLARKLIG 175 (221)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-30 Score=182.58 Aligned_cols=159 Identities=15% Similarity=0.163 Sum_probs=117.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cccccCcccceE--EEEEECC--EEEEEEEcCCCCC-cccccccccccccE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ 87 (181)
...+||+++|++|+|||||+++|.+.. +....++++... ..+...+ +.+.+|||+|+++ +......+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999999644 334344444332 3344444 5678999999887 55567778899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|||++++.+|+....|+..+.......++|+++|+||+|+.+.. ..++... + +...++++++|||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~----a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-C----AVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-H----HHHcCCEEEEEeCCCCCC
Confidence 99999999999999998887766543333579999999999996532 2222111 1 112245799999999999
Q ss_pred HHHHHHHHHHHhh
Q 030193 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 i~~~~~~i~~~l~ 178 (181)
++++|+++.+.+.
T Consensus 190 v~elf~~l~~~i~ 202 (211)
T 2g3y_A 190 VKELFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-31 Score=186.25 Aligned_cols=157 Identities=23% Similarity=0.417 Sum_probs=117.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcc--cceEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI--GFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~--~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+.. ..++. +.....+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999999988653 33433 34445555555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|+|++++.++.....|+..+.. ....++|+++|+||+|+.+.. ..+++...+ +++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHS-CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-hccCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 99999999999998887766544 333579999999999986532 222333322 3468899999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030193 165 GLYEGLDWLSNNIATK 180 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=174.66 Aligned_cols=160 Identities=18% Similarity=0.290 Sum_probs=112.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..++.+... ..+...+ +.+++||+||++++...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 567899999999999999999999887653 344444333 2344443 679999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|++++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999998887776655443222479999999999987632 222222211 112347899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 174 ~~~l~~~~~~ 183 (190)
T 3con_A 174 FYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-30 Score=180.65 Aligned_cols=163 Identities=20% Similarity=0.279 Sum_probs=114.5
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccccC----cccceEEEEE-ECCEEEEEEEcCCCCCccccc---ccccc
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVE-YKNISFTVWDVGGQDKIRPLW---RHYFQ 83 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----t~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~---~~~~~ 83 (181)
.+.++.+||+++|++|||||||++++.+........ +.......+. ...+.+++||++|+++|.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 445789999999999999999999888764433222 1212222222 355899999999999987776 78999
Q ss_pred cccEEEEEEECCCc--ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHh----hhCCCccCCcce
Q 030193 84 NTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITD----KLGLHSLRQRHW 153 (181)
Q Consensus 84 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~~~ 153 (181)
++|++|+|||+++. +++.....|+...... ..++|+++|+||+|+.+... ..++.. .+........++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999986 5666666666654321 25799999999999875321 112211 121222225678
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
++++|||++ .|++++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 999999999 99999999999876
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=177.20 Aligned_cols=160 Identities=16% Similarity=0.219 Sum_probs=122.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+. ...+|.+..... +.. ..+.+++||+||++++...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 56799999999999999999999998775 345565544322 222 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|++++.++.....++..+.... ...++|+++|+||+|+.+... .++... + ....+++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-V----AQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-H----HHHhCCeEEEEecCCCCCHHH
Confidence 999999999888877665443311 124689999999999976432 222221 1 112345799999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
++++|.+.+..
T Consensus 161 l~~~l~~~~~~ 171 (199)
T 2gf0_A 161 LFQELLTLETR 171 (199)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHHHHhh
Confidence 99999997754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-30 Score=180.69 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=93.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCccc--ceEEEEEEC----CEEEEEEEcCCCCCcccccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIG--FNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~-~~~~t~~--~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~ 85 (181)
...++|+++|++|+|||||+++|.+. .+. ...+|.+ .....+... .+.+++||+||++++...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56789999999999999999999998 655 4456665 333445555 57899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCC-C--CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-A--MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|++++|+|++++.++.....|+..+..... ..++|+++|+||+|+.+ . ...++..... +..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999998877766654322 14799999999999976 2 2223332221 122468999999
Q ss_pred CC-CCCHHHHHHHHHHHhhh
Q 030193 161 TS-GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~-~~~i~~~~~~i~~~l~~ 179 (181)
++ +.|+++++++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987653
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=166.53 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=119.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccC--cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+.++|+++|++|+|||||+++|.+..+.. ..+ +.+.....+...+..+++||+||++++...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999988753 333 334445567778899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-C-ccCCc--ceEEEEcccCCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-H-SLRQR--HWYIQSTCATSGEG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~S~~~~~~ 165 (181)
+|+|+++...... .+.+..... .++|+++|+||+|+.+. ..+++...+.. . ..... .+++++|||++|.|
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999987432222 222322222 47899999999999764 33333333221 1 11222 37899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+..
T Consensus 158 v~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 158 LDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=175.18 Aligned_cols=159 Identities=15% Similarity=0.155 Sum_probs=113.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cccccCcccceE--EEEEECC--EEEEEEEcCCCCC-cccccccccccccE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ 87 (181)
...+||+++|++|||||||+++|.+.. +....++++... ..+...+ +.+.+||++|.++ ++..+..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999999643 333334443332 3344444 5778999999876 55667788889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|||++++.+|.....|+..+.......++|+++|+||+|+.+.. ..++... + ....++++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-X----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-H----HHHhCCceEEeccccCCC
Confidence 99999999999999988877665442223578999999999986432 2222111 1 111235789999999999
Q ss_pred HHHHHHHHHHHhh
Q 030193 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 i~~~~~~i~~~l~ 178 (181)
++++|+++.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=176.16 Aligned_cols=161 Identities=18% Similarity=0.278 Sum_probs=113.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCcccceEEEEE-------ECCEEEEEEEcCCCCCccccccccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVETVE-------YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~--~~~-~~~~t~~~~~~~~~-------~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
.+||+++|++|||||||+++|.+. .+. .+.+|.+..+.... ...+.+++||++|+++|...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 333 34667776654432 24678999999999999999999999999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce----EEEEcccC
Q 030193 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW----YIQSTCAT 161 (181)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~S~~ 161 (181)
++++|+|++++ .++.....|+..+.... ++.|+++|+||+|+.+.....+..........+..++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999886 47888877776654321 4789999999999875422211111111111122233 48999999
Q ss_pred CCC-CHHHHHHHHHHHhhh
Q 030193 162 SGE-GLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~-~i~~~~~~i~~~l~~ 179 (181)
++. |++++++.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 996 999999999887653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-31 Score=185.47 Aligned_cols=163 Identities=19% Similarity=0.232 Sum_probs=122.4
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE---EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.+..+.. ..+|.+... ..++...+.+++||+||++++...+..+++++|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 3678999999999999999999999887653 344443222 123445578889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCccCCcce-EEEEcc
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRQRHW-YIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
+|+|++++.++......|...+.... .++|+++|+||+|+.+..... .+........++..+. ++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 99999999999888755555554432 379999999999997542211 1111122222333454 799999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 030193 160 ATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l 177 (181)
|++|.|+++++++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-29 Score=184.59 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=116.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc----ccCcccceEEEEEECCEEEEEEEcCCCCCccc---ccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~d~~i~v 91 (181)
||+++|+.|+|||||++++.++.+.. ..||.+..+..++ ..+++++|||+|+++|+. .+..|+++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988765442 4678888776663 458999999999999975 368899999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccC----CcceEEEEcccC
Q 030193 92 VDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLR----QRHWYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~S~~ 161 (181)
||++++ +.....+|.+++.. ...+++|+++++||+|+.++.. ..++....+...++ +.++++++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999976 44444555443321 1125799999999999976432 12333333222233 357899999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+ .|+.++|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999887653
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-28 Score=173.73 Aligned_cols=168 Identities=13% Similarity=0.097 Sum_probs=112.4
Q ss_pred Hhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCC------Cc---c
Q 030193 10 SKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQD------KI---R 75 (181)
Q Consensus 10 ~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~------~~---~ 75 (181)
...|. .+.++|+++|++|+|||||+++|++..+. ...+ |.......+...+..+.+|||||+. +. .
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 99 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEM 99 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHH
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHH
Confidence 34444 57899999999999999999999998875 2222 4455555667788999999999983 31 1
Q ss_pred cccccccccccEEEEEEECCCcccHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcc-
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH- 152 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~- 152 (181)
..+..++..+|++++|+|++++.++.. ...++..+ ... ..++|+++|+||+|+.+...................+
T Consensus 100 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l-~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 100 TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI-KSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHH-HTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHH-HHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 112344678899999999998877642 22334333 322 1379999999999997643322111101011111222
Q ss_pred -eEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 153 -WYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 -~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++++|||++|.|+++++++|.+.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-28 Score=168.80 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=109.0
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--ceEEEEEECCEEEEEEEcCC----------CCCccccc
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGG----------QDKIRPLW 78 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~ 78 (181)
.+....++|+++|++|+|||||+++|++..+. ...++.+ .....+.. +..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34467899999999999999999999998743 2233222 11222222 33799999999 56666667
Q ss_pred ccccccc---cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCccCCc
Q 030193 79 RHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSLRQR 151 (181)
Q Consensus 79 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~ 151 (181)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.+..... ++...+. ...
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~ 167 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----IDP 167 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CCT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----ccC
Confidence 7777766 9999999998877665532 2223322 478999999999998754433 2332232 234
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+++++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999998765
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=160.37 Aligned_cols=147 Identities=22% Similarity=0.287 Sum_probs=107.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCccc------ccccccc--cc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--NT 85 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~--~~ 85 (181)
.++|+++|++|+|||||+++|.+..+. ...| |.+.....+...+..+++|||||++++.. ....+++ ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 579999999999999999999987653 3344 33444555677789999999999987752 3355554 79
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+++++|+|+++.+ ....|+..... .+.|+++|+||+|+.... ..+++...++ ++++++||+
T Consensus 83 ~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA~ 147 (165)
T 2wji_A 83 DLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAA 147 (165)
T ss_dssp SEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGG
T ss_pred CEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEcC
Confidence 9999999998754 33344444433 368999999999985321 2334444333 468999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030193 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~ 178 (181)
+|.|++++|+++.+.+.
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=161.85 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC-------ccccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~d 86 (181)
+||+++|++|+|||||++++.+..+. ...+ +.+.....+...+..+.+||+||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 68999999999999999999988743 2222 33455566777888999999999877 3445566788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce-EEEEcccCCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 165 (181)
++++|+|+++..+. ...++...+.. .+.|+++|+||+|+.+.. ++... + ...++ +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~-~-----~~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGP-L-----YGLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGG-G-----GGGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccch--HhHHH-H-----HhCCCCCeEEEecccCCC
Confidence 99999999875433 22344444443 468999999999987541 11111 1 12233 588999999999
Q ss_pred HHHHHHHHHHHh
Q 030193 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~~~~~i~~~l 177 (181)
++++++++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998875
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=163.78 Aligned_cols=152 Identities=19% Similarity=0.246 Sum_probs=109.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 82 (181)
....+|+++|++|+|||||+++|.+..+. ...+ |.+.....+...+..+++|||||..++... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 34689999999999999999999987642 2233 334445567778888999999998754321 11356
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.++. ...|+..+.. ....++|+++|+||+|+.+.. .......+.++++|||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIA-RLPAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHH-HSCTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHH-hcccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCC
Confidence 8999999999999887765 3345444333 222479999999999985421 111122356899999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|+++++++|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=167.05 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=110.3
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEE-EEEECCEEEEEEEcCC----------CCCccccccc
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG----------QDKIRPLWRH 80 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g----------~~~~~~~~~~ 80 (181)
.+....++|+++|++|+|||||+++|++..+....++.+.... .....+..+.+||+|| ++.+...+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3446788999999999999999999999885544444332221 1222345788999999 5556666666
Q ss_pred ccccc---cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCC-cceEEE
Q 030193 81 YFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQ 156 (181)
Q Consensus 81 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 156 (181)
+++.+ +++++|+|+.+..+.... .+...+.. .++|+++|+||+|+.+....+....... ..+.. ..++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~ 171 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHR-KVFSKYGEYTII 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHH-HHHHSSCCSCEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHH-HHHhhcCCCceE
Confidence 66655 999999999765433222 22222222 2689999999999986544333322221 11111 245799
Q ss_pred EcccCCCCCHHHHHHHHHHHhhh
Q 030193 157 STCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++||++|.|++++++++.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998865
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=175.03 Aligned_cols=165 Identities=17% Similarity=0.203 Sum_probs=121.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||++++.++.+. ...+|++..+ ..+...+ +.+++||+||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 56799999999999999999999988875 3455554333 2334444 567799999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------ccCCcce-EEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~S~ 160 (181)
|+|++++.++......|...+.... .++|+++|+||+|+.+.....+........ ..+..+. ++++|||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999999888754544444322 379999999999986532111111110000 0111233 8999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
++|.|++++++.|.+.+..+
T Consensus 312 ~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999987654
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=174.86 Aligned_cols=160 Identities=12% Similarity=0.108 Sum_probs=113.9
Q ss_pred cccceEEEEcCC---------CCChHHHHhhhhc---CCcc-cccCcc-cceE------------------EEEEECCEE
Q 030193 15 KKEMRILMVGLD---------AAGKTTILYKLKL---GEIV-TTIPTI-GFNV------------------ETVEYKNIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~---------~~GKSsli~~l~~---~~~~-~~~~t~-~~~~------------------~~~~~~~~~ 62 (181)
...+||+++|++ |||||||+++|++ ..+. ...+|+ +..+ ..++...+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 667999999999 9999999999998 4443 334433 2111 013445688
Q ss_pred EEEEE-----------------------cCCCCCcccccccccc---------------------cccEEEEEEECCCc-
Q 030193 63 FTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFVVDSNDR- 97 (181)
Q Consensus 63 ~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~- 97 (181)
+++|| ++|+++|...+..+++ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888887 79999999999998
Q ss_pred -ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 98 -DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 98 -~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
.+|+.+..|+..+.......++|+++|+||+|+.+....++....... ..++++++|||++|.|++++|++|.+.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 899998888776654322247999999999998653222222221111 124579999999999999999999987
Q ss_pred hh
Q 030193 177 IA 178 (181)
Q Consensus 177 l~ 178 (181)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-27 Score=175.95 Aligned_cols=161 Identities=22% Similarity=0.252 Sum_probs=119.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--cc--cccCcccceEEEEEE-CCEEEEEEEcCCCCCc-----ccccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~-----~~~~~~~~~~~ 85 (181)
..+||+++|++|||||||+++++++. +. ...+|.+..+..+.. +++.+++||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 36899999999999999999998873 32 356788888777775 5789999999999988 67888889999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH--hcCCCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCccCCc---ceEEEE
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQR---HWYIQS 157 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~ 157 (181)
|++++|+|++++.++.....|...+ +... .+++|+++|+||+|+.+.....+ ..........+.. .+++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9999999999999998886543221 2111 25799999999999976211110 1111111111222 368999
Q ss_pred cccCCCCCHHHHHHHHHHHhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~ 178 (181)
|||++ .|+.+++..+.+.+.
T Consensus 161 tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTC
T ss_pred eeecC-ChHHHHHHHHHHHHc
Confidence 99999 899999998887653
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-28 Score=168.61 Aligned_cols=160 Identities=18% Similarity=0.238 Sum_probs=111.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCC-----------CCCccccccccccc-
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYFQN- 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~~~- 84 (181)
++|+++|++|+|||||++++.+..+. ...|+.......+... .+++||+|| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998865 3455555544455544 789999999 55666677777766
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHH---------HhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcce
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHR---------MLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (181)
++++++|+++.+..++......|.. ........++|+++|+||+|+.+.. ..+++...++.. +.+...
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCC
Confidence 6666666666555667665333322 1111111479999999999997643 234455555442 112234
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
++++|||++|.|++++++++.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999987643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-27 Score=169.73 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=111.2
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCc---ccccC--cccceEEEEE-ECCEEEEEEEcCCCCC----------c
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VTTIP--TIGFNVETVE-YKNISFTVWDVGGQDK----------I 74 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~--t~~~~~~~~~-~~~~~~~~~d~~g~~~----------~ 74 (181)
..+....++|+++|++|+|||||+|+|++... ....+ |.......+. ..+..+.+|||||... +
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 34446789999999999999999999999872 22233 3333333343 3468899999999532 3
Q ss_pred cccccccccc---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH----hhhCCC-
Q 030193 75 RPLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT----DKLGLH- 146 (181)
Q Consensus 75 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~----~~~~~~- 146 (181)
...+..+++. +|++++|+|+.+..+ .....+...+.. .++|+++|+||+|+.+.....+.. ..+...
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 4445555555 788999999986433 333444455544 478999999999997643322222 111100
Q ss_pred -ccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 147 -SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 147 -~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
......++++++||++|.|+++++++|.+.+..
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 001245789999999999999999999998764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=157.05 Aligned_cols=151 Identities=22% Similarity=0.274 Sum_probs=113.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCc--ccceEEEEEECCEEEEEEEcCCCCCcc------cccccccc--
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ-- 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~-- 83 (181)
.+.++|+++|++|+|||||+++|.+..+. ...|+ .+.....+...+..+++|||||++.+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 45789999999999999999999987643 33443 334455677788999999999998875 33555554
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.++++++|+|+.+ +.....|+..... .+.|+++|+||+|+... ...+++...++ ++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEE
Confidence 4999999999974 4555555555443 47899999999998542 23344444443 3689999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|+++.|++++++++.+.+.++
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999887653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=162.64 Aligned_cols=159 Identities=18% Similarity=0.338 Sum_probs=119.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|||||||++++.+..+. ...||.+.. ...+...+ +.+++||++|+++++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45689999999999999999999998875 345555433 33455554 67889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|+.+..++.....|+..+.. ....+.|+++++||+|+.+.. ..++.+. + +...++.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKSDLRHLRAVPTDEARA-F----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEECcccccccCcCHHHHHH-H----HHHcCCeEEEEeCCCCCCHH
Confidence 99999998888877776654432 122478999999999996532 2222221 1 12234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++++++.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=161.89 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=112.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCccccc------cccc--c
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW------RHYF--Q 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~------~~~~--~ 83 (181)
.+.++|+++|++|+|||||+|+|++..+. ...| |.+.....+...+..+++||+||+..+...+ ..++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999999998764 3344 4444555677788999999999998776532 4454 5
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+|++++|+|+++.++. ..++..... .++|+++|+||+|+.+. ...+++...++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 79999999999876543 234444433 37999999999998542 12344544443 4789999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++|.|++++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=165.59 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=116.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc--ccC--cccceEEEEEEC-CEEEEEEEcCCCCCcc----------cc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYK-NISFTVWDVGGQDKIR----------PL 77 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~--t~~~~~~~~~~~-~~~~~~~d~~g~~~~~----------~~ 77 (181)
++...-.|+++|.+|||||||+|+|++..+.. ..+ |.......+... +..+.+|||||+..+. ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 33556789999999999999999999988652 222 333344456667 8999999999986654 45
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCccCCcceEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+..+++.+|++++|+|+++..++.....|+ ..+.. .++|+++|+||+|+. +.....+....+.... ....+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~-~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQ-NFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHH-HHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEE
Confidence 667788999999999999887776654434 44443 478999999999997 4433333322221110 0123689
Q ss_pred EcccCCCCCHHHHHHHHHHHhhh
Q 030193 157 STCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++||++|.|++++++++.+.+..
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEeCCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999988753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=164.97 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=112.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC--------cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 83 (181)
+..+|+++|.+|+|||||+|+|++..+. +..| |.......+...+.++++|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 4557999999999999999999998864 2333 22322334566789999999999876 3445667789
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|++++|+|+++..+. ...++.+.+.... .+.|+++|+||+|+.+... ..+....+ . ...+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~-----~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL-L-----PEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT-S-----TTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCCh--HHHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh-c-----CcCcEEEEeCCC
Confidence 99999999999876443 3456555555432 3799999999999875433 23333333 1 123689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|++++++.+.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999988664
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=165.04 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=110.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc----------ccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~~ 82 (181)
.+++|+++|.+|+|||||+|+|++..+. ...| |.+.....+...+..+.+|||||+..+... +..++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4689999999999999999999998754 3344 444555667777889999999998876632 22232
Q ss_pred --ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEE
Q 030193 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+.+|++++|+|+++.++......++.+ .++|+++|+||+|+.+.. ..+.+...++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 689999999999876544433333332 269999999999986532 2344444443 4689
Q ss_pred EcccCCCCCHHHHHHHHHHHhh
Q 030193 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++||++|.|++++++++.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988664
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=162.33 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=108.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCccc----------cccccc--
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF-- 82 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~-- 82 (181)
.+|+++|.+|||||||+|+|++.... ...| |.+.....+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 58999999999999999999998753 3444 44455666777889999999999877764 345566
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEEEc
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+.+|++++|+|+++.++..... ..+.. .++|+++|+||+|+.... ..+.+...++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~----~~l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLT----SQLFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHH----HHHTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHH----HHHHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 7899999999998754443322 23333 379999999999986432 2334444443 479999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030193 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~ 176 (181)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=154.49 Aligned_cols=157 Identities=17% Similarity=0.328 Sum_probs=119.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|||||||++++.+..+. .+.||.+... ..+...+ +.+++||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34689999999999999999999998875 4556665443 3455555 56678999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|+.+..++++...|+..... ....+.|+++++||+|+.+.. ..++.+. + +...++.++++|++++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l----~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKSDLRHLRAVPTDEARA-F----AEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHH
Confidence 99999998888877766654332 122468999999999986532 2222221 1 12234578999999999999
Q ss_pred HHHHHHHHHh
Q 030193 168 EGLDWLSNNI 177 (181)
Q Consensus 168 ~~~~~i~~~l 177 (181)
++++.+.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-25 Score=160.84 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=106.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc-ccccCc--ccceEEEEEECCEEEEEEEcCCCCCcc------cccccccc--c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t--~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 84 (181)
+.++|+++|++|||||||+|+|++... ....|. .+.....+.. +..+++|||||+..+. ..+..++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 367999999999999999999998763 344453 3333333433 6789999999998775 34455554 5
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|+|+++.++. ..++..... .++|+++|+||+|+... ...+.+...++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 9999999999875433 333333333 47999999999998532 23344444443 46899999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|++++++++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=168.98 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=97.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCccccc--------cccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 82 (181)
++.++|+++|++|+|||||+|+|++... .+..+ |.+.....+...+..+++|||||...+...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 5678999999999999999999999863 33334 4445556778889999999999987765433 3467
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCccCCcceEEEEccc
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--ITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+.+|++++|+|++++.++..... +..++... .++|+++|+||+|+........ +... . ..+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEEEE
Confidence 89999999999998877643211 11222211 2689999999999976543321 2221 0 136889999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=174.49 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=112.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCC----------CCcccccc-c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DKIRPLWR-H 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~~~-~ 80 (181)
..++|+++|++|+|||||+|+|++.... +..+ |.+.....+...+..+++|||||+ +.|...+. .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999998753 3333 444445567778889999999997 34443333 4
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++.+|++++|+|+++..+++.. .++ ..+.. .++|+++|+||+|+.+... .+++..............+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~-~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIA-GYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHH-HHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHH-HHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 67889999999999988776654 333 33332 4799999999999986543 23333222211112234579999
Q ss_pred ccCCCCCHHHHHHHHHHHhhh
Q 030193 159 CATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l~~ 179 (181)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=174.39 Aligned_cols=155 Identities=21% Similarity=0.318 Sum_probs=106.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEE------------ECCEEEEEEEcCCCCCcccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE------------YKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~------------~~~~~~~~~d~~g~~~~~~~~~~~ 81 (181)
...+||+++|.+|||||||++++++..+. ...+|.+..+.... ..+..+++||+||++.+...+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 56799999999999999999999998875 44567766655331 235899999999999999999999
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcc
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++.+|++++|+|+++.+.... |+..+ .... .+.|+++|+||+|+.+... .++..... ...+.+++++|
T Consensus 119 l~~~d~ii~V~D~s~~~~~~~---~~~~l-~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTDSNKHY---WLRHI-EKYG-GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGGGGHHH---HHHHH-HHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEECC
T ss_pred ccCCcEEEEEEeCCCchhHHH---HHHHH-HHhC-CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEEe
Confidence 999999999999986654433 33332 2211 3689999999999976433 33333322 12234699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 030193 160 ATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~ 179 (181)
|++|.|++++++.+.+.+.+
T Consensus 189 A~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp C-----CTTHHHHHHHHHTC
T ss_pred cCcccCHHHHHHHHHHHHhc
Confidence 99999999999999987754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-24 Score=156.00 Aligned_cols=150 Identities=22% Similarity=0.236 Sum_probs=113.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCccc------cccccc--cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~ 84 (181)
..++|+++|++|+|||||+|+|++..+. ...| |.+.....+...+..+.+||+||+..+.. .+..++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3689999999999999999999998764 3344 34444556777889999999999987766 455555 67
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|+|+++. .....++...... ..+|+++|+||+|+.+. .....+.+.++ ++++++|+
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBG
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEe
Confidence 9999999999864 3344445554442 23999999999997532 23445555554 36899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++++.+.+.+..
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-26 Score=163.24 Aligned_cols=117 Identities=25% Similarity=0.341 Sum_probs=94.7
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccc----ccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccc----c
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~ 85 (181)
....++|+++|++|+|||||+++|.+..+.. ..++....+ ....+++||+||++.++..+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4678999999999999999999999987643 233332222 56789999999999999888888877 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCC
Q 030193 86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 86 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~ 135 (181)
|++++|+|++ ++.++.....++..++... ...++|+++|+||+|+.+...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8889998888888776532 125799999999999987654
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=166.46 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=113.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccccc----Ccc--------------cc-----eEEEEEECCEEEEEEEcCC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTI--------------GF-----NVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----~t~--------------~~-----~~~~~~~~~~~~~~~d~~g 70 (181)
.+..++|+++|++|+|||||+++|++....... .+. +. ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 467899999999999999999999985432100 000 00 0000011237899999999
Q ss_pred CCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCC
Q 030193 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLH 146 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~----~~~~~~~~ 146 (181)
|++|...+..++..+|++++|+|+.+..++....+++...... ...|+++|+||+|+.+....++ +...+.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~-- 159 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK-- 159 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT--
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999998776566666655443221 2358999999999986543222 222221
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.....+++++++||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 11223568999999999999999999998764
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-25 Score=170.97 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=108.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc--cc--cCcccceEEEEEECCE-EEEEEEcCCCCCcccc-------ccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRH 80 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~-------~~~ 80 (181)
+....++|+++|++|+|||||+++|++..+. +. ..|.+.....+...+. .+++|||||++++... +..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4467899999999999999999999998763 22 2255566667777665 9999999999877654 234
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
++..+|++++|+|+... .....|+. .+.. .++|+++|+||+|+.+.... +....+. +..+++++++||
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~-~l~~---~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVN-LFKE---MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHH-HHHH---TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHH-HHHh---cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEEC
Confidence 77889999999999322 22233333 3333 37999999999999876544 2222222 233467899999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|+++++++|.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999874
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-24 Score=166.65 Aligned_cols=151 Identities=25% Similarity=0.348 Sum_probs=114.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCC-Cccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQD-KIRP--------LWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~-~~~~--------~~~~~ 81 (181)
++.++|+++|.+|+|||||+|+|++.+. .+..| |.+.....+...+..+++|||||.. .+.. ....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3458999999999999999999998763 33344 5556667788889999999999987 5542 12356
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
++.+|++|+|+|++++.+++.. +.+ +.+ .++|+++|+||+|+.+....+++..... .+++++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 7889999999999988776543 223 333 2689999999999976544455544322 22468899999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030193 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~ 178 (181)
+|.|+++++++|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=170.38 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=113.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCC----------CCCcccccc-
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG----------QDKIRPLWR- 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~~- 79 (181)
...++|+++|.+|+|||||+++|++.... +..+ |.+.....+...+..+++||||| ++.|...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 45789999999999999999999987632 3333 34444466778889999999999 666666654
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEE
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++.. .....++...+.. .++|+++|+||+|+.+... .++...........-..+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~--~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGI--IEQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCc--CHHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 4678899999999997643 3344455555444 4799999999999976432 2333332211111112357999
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+||++|.|++++++.+.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=158.08 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=115.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCCCCCccc---------cccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---------~~~~~~ 82 (181)
...++|+++|++|+|||||+++|.+..+. . ...|.+.....+...+..+.+|||||...... ....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999988753 2 23355666666677789999999999754321 112344
Q ss_pred ccccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
..+|.+++|+|+++.. ++.....++..+.... .+.|+++|+||+|+......++..... ...+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5699999999998776 6676666666554422 278999999999987643332222211 123457889999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987653
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=159.26 Aligned_cols=133 Identities=26% Similarity=0.441 Sum_probs=105.7
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (181)
||.++....+..+++.+++||++|++.++..|..++++++++|+|+|+++ ..++.....++..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 35666777788889999999999999999999999999999999999998 46799999999998876555
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHhHHHhhhC-----CCcc-CCcceEEEEcccCCCCCHHHHHHHH
Q 030193 117 RDAVLLVFANKQDLPN-----------------AMNAAEITDKLG-----LHSL-RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
.++|+++++||+|+.. ....++...... +... ...++++++|||+++.|++++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 6899999999999842 122333322211 1111 2356889999999999999999999
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 339 ~~~i~~ 344 (353)
T 1cip_A 339 TDVIIK 344 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-24 Score=165.91 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC---------ccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~ 84 (181)
.+|+++|.+|||||||+|+|++.... ...| |.+.....+.+.+..+++|||||.+. +...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999988743 3333 45566677888899999999999764 23446677899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce-EEEEcccCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (181)
+|++++|+|+.+..+. ...++..++.. .++|+++|+||+|+.+.. ..+....+. ..++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~--~d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCH--HHHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCC
Confidence 9999999999765433 22344444433 368999999999985320 111101111 1122 4679999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030193 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~ 178 (181)
.|++++++++.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 151 INLDTMLETIIKKLE 165 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999998775
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=153.56 Aligned_cols=134 Identities=24% Similarity=0.417 Sum_probs=107.3
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC----------CcccHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (181)
||+++....+..+++.+++||++|+++++..|.+|+++++++|+|+|++ +..++.....+|..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 4677788888899999999999999999999999999999999999664 567888899999998877666
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHHHhh----h-CCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 117 RDAVLLVFANKQDLPNA------------------MNAAEITDK----L-GLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~------------------~~~~~~~~~----~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
.++|+++++||+|+..+ ...++.... + .....+..++.+++|||+++.|++++|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 78999999999998531 122222221 1 122233456788999999999999999999
Q ss_pred HHHhhhc
Q 030193 174 SNNIATK 180 (181)
Q Consensus 174 ~~~l~~~ 180 (181)
.+.+.++
T Consensus 313 ~~~Il~~ 319 (327)
T 3ohm_A 313 KDTILQL 319 (327)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9987654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=168.29 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=102.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccccc--C--cccceEEEEEECCEEEEEEEcCCCC--------Cccccccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~ 84 (181)
.++|+++|.+|||||||+|+|++..+.... | |.+..+..+.+.+..+++|||||.+ .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 478999999999999999999987754222 2 3344445555667899999999985 566667788899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce-EEEEcccCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (181)
+|++++|+|+.+..+.. ..++.+.+.+ .++|+++|+||+|+..... + ...+...++ +++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~------~~~~~~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--N------IYDFYSLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------C------CCSSGGGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--h------HHHHHHcCCCCeEEEeCcCC
Confidence 99999999998765543 4566666664 5789999999999865321 0 011111222 5789999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030193 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~ 178 (181)
.|++++++++.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFK 164 (436)
T ss_dssp BTHHHHHHHHHHTGG
T ss_pred CChHHHHHHHHHhcC
Confidence 999999999998775
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-24 Score=160.08 Aligned_cols=156 Identities=24% Similarity=0.303 Sum_probs=113.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-EEEEEEEcCCC----CCcccccccccc---ccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQ----DKIRPLWRHYFQ---NTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~d~~g~----~~~~~~~~~~~~---~~d 86 (181)
.+|+++|.+|||||||+++|++..+. .. ..|.......+...+ ..+.+||+||. ..+......+++ .++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 47999999999999999999987643 22 235555555666665 79999999994 334444444544 499
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 87 GLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
++|+|+|+++ +++++....++..+.... ...++|+++|+||+|+.+.. ..+++...+... ++++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~------~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD------YPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC------CCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC------CCEEEEECC
Confidence 9999999988 678877776665554321 13579999999999987532 123333333211 468899999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
++.|+++++++|.+.+.+
T Consensus 313 tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 313 TREGLRELLFEVANQLEN 330 (342)
T ss_dssp CSSTTHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=155.89 Aligned_cols=132 Identities=26% Similarity=0.409 Sum_probs=97.1
Q ss_pred cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCCC
Q 030193 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.++....+..+++.+++||++|++.++..|..++++++++|||+|+++ ..++.....+|..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 3455666777889999999999999999999999999999999999998 678999999999988765556
Q ss_pred CCeEEEEEeCCCCCCC------------------CCHhHHHhhh-----CCCccC-CcceEEEEcccCCCCCHHHHHHHH
Q 030193 118 DAVLLVFANKQDLPNA------------------MNAAEITDKL-----GLHSLR-QRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 118 ~~piivv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
++|+++++||+|+..+ ...++..... .+.... ..++.+++|||+++.|++++|+++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 8999999999998521 2333333221 111111 346789999999999999999999
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=162.99 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=103.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCccccc--------cccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 82 (181)
+..++|+++|++|+|||||+|+|++... .+..+ |.+.....+...+..+++|||||...+...+ ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4678999999999999999999998754 23334 3344445677789999999999976554332 3357
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.+... ..+.+.+. ..|+++|+||+|+........ ...+. ...+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~--~~i~~~l~-----~~piivV~NK~Dl~~~~~~~~------~~~~~-~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD--QEIYEQVK-----HRPLILVMNKIDLVEKQLITS------LEYPE-NITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH--HHHHHHHT-----TSCEEEEEECTTSSCGGGSTT------CCCCT-TCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH--HHHHHhcc-----CCcEEEEEECCCCCcchhhHH------HHHhc-cCCcEEEEECCC
Confidence 88999999999988765443 33444443 379999999999876432221 11111 245789999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
|.|+++++++|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=170.33 Aligned_cols=158 Identities=17% Similarity=0.109 Sum_probs=113.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccC--cccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||+++|.+..+.. ..+ |.++....+.. .+..+++||||||+.|...+..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 57899999999999999999999876542 222 33333333433 456899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--C-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--N-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|+++....+. .+.+..... .++|+++++||+|+.+.. . ..++.............++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt-~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQT-VESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHH-HHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHH-HHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99987544333 333333332 478999999999987532 1 122222111111112357899999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+++++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999988653
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=151.29 Aligned_cols=153 Identities=19% Similarity=0.107 Sum_probs=109.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCC---------Cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~---------~~~~~~~~~~ 82 (181)
+..+|+++|++|+|||||+|++++..+. +..+ |.......+...+..+.+|||||+. .+......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 3458999999999999999999998764 2223 2223334466678999999999987 3445566778
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCccCCcce-EEEEccc
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~S~ 160 (181)
+.+|++++|+|+.+ +.....++.+.+.. .+.|+++++||+|+.. .....+....+.. ..++ .++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~----~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHH----hcCcCceEEEEC
Confidence 99999999999976 33444555555553 4689999999999875 2222222222211 1122 6889999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=161.02 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=89.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------------------Cccc-------ccCcccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------------------EIVT-------TIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..+|+++|++|+|||||+++|+.. .+.+ ...|.......+.+.++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 56789999999999999999999621 1111 1224555667788899999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|+.+|...+..+++.+|++|+|+|+++..+.+.. ..|..... .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999876554443 34443333 47899999999999654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=156.72 Aligned_cols=159 Identities=17% Similarity=0.097 Sum_probs=102.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc----cccC--cccceEEEEEE---------------C--------CEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIP--TIGFNVETVEY---------------K--------NISFTV 65 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~~~--t~~~~~~~~~~---------------~--------~~~~~~ 65 (181)
...++|+++|+.++|||||+++|.+.... +..+ |.+..+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 56789999999999999999999865422 1122 55444333221 1 168999
Q ss_pred EEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHh
Q 030193 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITD 141 (181)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~ 141 (181)
||+|||++|...+...+..+|++++|+|+++........+.+...... ...|+++++||+|+.+... .+++..
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888999999999998542112222222221111 2358999999999976542 233333
Q ss_pred hhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 142 KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 142 ~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.+.. ....+++++++||++|.|+++++++|.+.+.
T Consensus 163 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3321 1123568999999999999999999998664
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=146.83 Aligned_cols=125 Identities=27% Similarity=0.393 Sum_probs=95.7
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccc----cCcccceEEEEEECCEEEEEEEcCCCCCccccccccccc----c
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~ 85 (181)
....++|+++|++|||||||+++|.+..+... .++... ++....+.+||+||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 36778999999999999999999999875432 222222 2256789999999999998888888776 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030193 86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
|++++|+|++ ++.++.....|+...+... ...++|+++|+||+|+.+....+++...+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 8889988888887776432 12479999999999998776666555443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=159.06 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=106.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCccccc------------c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW------------R 79 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~------------~ 79 (181)
..++|+++|++|||||||+|++++.... +..+ |.+.....+...+..+.+|||+|..+..... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999998752 3333 3334445677788899999999974332211 2
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEE
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+.+..+.+. ..+...+.. .+.|+++|+||+|+.+... .+++..............++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 35567999999999987655443 233343332 4789999999999976432 3333222211111122357899
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+||++|.|++++++.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999886643
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=163.11 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=108.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccccc-----CcccceEEEEE----------------ECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~~~d~~g~~~ 73 (181)
.+.++|+++|++++|||||+++|++..+.... ++.+....... +....+++||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876554322 23332222111 1123699999999999
Q ss_pred cccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------------~ 136 (181)
|...+..+++.+|++|+|+|+++ +++++... . +.. .++|+++++||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~-l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----I-LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----H-HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----H-HHH---cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99999999999999999999987 44444332 2 222 4789999999999864211 0
Q ss_pred h-----------HHHhhhCCCcc----------CCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 137 A-----------EITDKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+ ++...+....+ ....++++++||++|.|++++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 1 11111111111 024578999999999999999999987654
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-23 Score=163.79 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=110.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC----cc----c--ccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV----T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~----~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 84 (181)
...++|+++|++++|||||+++|.+.. +. + ...|.+..+..+..++..+++||+||+++|...+..++..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 456899999999999999999999876 21 1 1235566666777788999999999999998888889999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh----hCCC-ccCCcceEEEEcc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK----LGLH-SLRQRHWYIQSTC 159 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~S 159 (181)
+|++++|+|+++... ....+.+. .+.. .++|+++|+||+|+.+....+++... +... .+ .+++++++|
T Consensus 97 aD~~ilVvda~~g~~-~qt~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~--~~~~ii~vS 169 (482)
T 1wb1_A 97 IDLALIVVDAKEGPK-TQTGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL--KNSSIIPIS 169 (482)
T ss_dssp CCEEEEEEETTTCSC-HHHHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG--GGCCEEECC
T ss_pred CCEEEEEEecCCCcc-HHHHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc--ccceEEEEE
Confidence 999999999986221 11122222 2222 36888999999999864322222221 1111 11 156899999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++|.|+++++++|.+.+.
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999998764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=165.58 Aligned_cols=152 Identities=23% Similarity=0.285 Sum_probs=105.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC----cccceEEEEEECCEEEEEEEcCC--------CCCccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGG--------QDKIRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g--------~~~~~~~~~~~~ 82 (181)
....+|+++|.+|||||||+|+|++..+....+ |.+.....+.+.+..+++||||| ++.+...+..++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 557899999999999999999999987643222 33344445555678999999999 556777788888
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++|+|+|..+ ++.....++.+.+.+ .++|+++|+||+|+.+... .....+.+ .+ + .++++||++
T Consensus 101 ~~ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e~~~l-g~---~-~~~~iSA~~ 168 (456)
T 4dcu_A 101 DEADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYDFYSL-GF---G-EPYPISGTH 168 (456)
T ss_dssp HHCSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG-SS---S-SEEECCTTT
T ss_pred hhCCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHHHHHc-CC---C-ceEEeeccc
Confidence 99999999999864 344556677777765 5799999999999864321 11111100 11 1 246899999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|++++++.+.+.+.
T Consensus 169 g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CTTHHHHHHHHHTTGG
T ss_pred ccchHHHHHHHHhhcc
Confidence 9999999999988764
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=159.99 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=106.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--cc---------ccc-------CcccceEEEEEEC-----CEEEEEEEcCCCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------TTI-------PTIGFNVETVEYK-----NISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~---------~~~-------~t~~~~~~~~~~~-----~~~~~~~d~~g~~ 72 (181)
+..+|+++|+.++|||||+++|+... .. +.. .|.......+.+. .+.+++||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999997632 10 110 1222223344443 4899999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccC
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~ 149 (181)
+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+..... .+++...++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence 99999999999999999999998766665555444333 2 3789999999999976432 223334333321
Q ss_pred CcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+++++||++|.|++++++++.+.+..
T Consensus 156 ---~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 ---TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp ---TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ---ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 137899999999999999999988764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=145.75 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=104.9
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCc-cc-ccC---cccceEEEEEECCEEEEEEEcCCCCCccccc----------
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI-VT-TIP---TIGFNVETVEYKNISFTVWDVGGQDKIRPLW---------- 78 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~---t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---------- 78 (181)
....++|+++|++|+|||||++++++... .. ..+ |.......+...+..+.+|||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999998773 22 222 4445555677788999999999976654322
Q ss_pred -ccccccccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhhh
Q 030193 79 -RHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN-KQDLPNAMNAAE------------ITDKL 143 (181)
Q Consensus 79 -~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~n-K~D~~~~~~~~~------------~~~~~ 143 (181)
..+++.+|++++|+|+++.... .....++.+..... ...|.++|+| |+|+... ...+ +....
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 2366889999999999863322 12223343433211 1346666666 9999743 2322 22222
Q ss_pred CCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..... .+..+++||+++.|++++++++.+.+..
T Consensus 176 ~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 176 GGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEE---EecCcccccccHHHHHHHHHHHHHHHHh
Confidence 22110 0111689999999999999999998765
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=154.38 Aligned_cols=146 Identities=8% Similarity=0.036 Sum_probs=110.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+|+++|++++|||||+++|+ ....|.+.....++.++..+++|||||+++|.......++.+|++++|+| . ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999999 33456667777777788999999999999998888888899999999999 4 33
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeE-EEEEe-CCCCCCCCCHh----HHHhhhCCCccCCcceEEEE--cccCC---CCCHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVL-LVFAN-KQDLPNAMNAA----EITDKLGLHSLRQRHWYIQS--TCATS---GEGLY 167 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~S~~~---~~~i~ 167 (181)
.+....+++..... .++|. ++++| |+|+ +....+ ++...+... ....+++++ +||++ +.|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 44455555543322 35676 89999 9998 432222 222222211 113578999 99999 99999
Q ss_pred HHHHHHHHHhh
Q 030193 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~l~ 178 (181)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999988764
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=151.63 Aligned_cols=132 Identities=27% Similarity=0.369 Sum_probs=104.9
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC----------CcccHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (181)
+|.++....+..+++.+++||++|+++++..|.+|+++++++|+|+|++ +..++.....+|..++.....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 4667778888889999999999999999999999999999999999998 678899999999998887666
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHH----Hhhh-------CCCccCC-----------cceEEEE
Q 030193 117 RDAVLLVFANKQDLPNA-----------------MNAAEI----TDKL-------GLHSLRQ-----------RHWYIQS 157 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~-----------------~~~~~~----~~~~-------~~~~~~~-----------~~~~~~~ 157 (181)
.++|+++++||+|+..+ ...++. ...+ ....... ..+.+.+
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998531 112221 1122 1111111 4588999
Q ss_pred cccCCCCCHHHHHHHHHHHhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~ 178 (181)
|||++..|++.+|+.+.+.+.
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-22 Score=158.27 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=109.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cc---------ccc-------CcccceEEEEEEC-----CEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------TTI-------PTIGFNVETVEYK-----NISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~---------~~~-------~t~~~~~~~~~~~-----~~~~~~~d~~g~ 71 (181)
++..+|+++|+.++|||||+++|+... +. +.. .|.......+.+. .+.+++||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997521 10 100 1222222344333 378999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCc
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHS 147 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~----~~~~~~~~~ 147 (181)
.+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+.... .++ +...++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~- 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD- 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC-
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhhCCC-
Confidence 999999999999999999999999877666655544433 2 479999999999997643 222 33322221
Q ss_pred cCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..+++++||++|.|++++++++.+.+..
T Consensus 157 ----~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 ----PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ----GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ----cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 1247899999999999999999988754
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=157.13 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=109.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc----cccC--cccceEEEEEEC-----------------------CEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIP--TIGFNVETVEYK-----------------------NISFT 64 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~~~--t~~~~~~~~~~~-----------------------~~~~~ 64 (181)
+...++|+++|++++|||||+++|++.... +..+ |.+..+...... ...++
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 355789999999999999999999865422 1122 555444333220 17899
Q ss_pred EEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHH
Q 030193 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEIT 140 (181)
Q Consensus 65 ~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~ 140 (181)
+||+|||++|...+...+..+|++++|+|+++........+.+...... ...|+++|+||+|+.+... .+++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999888888888999999999998532112222222211110 2358999999999986432 22233
Q ss_pred hhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
..+.. ....+++++++||++|.|+++++++|.+.+.
T Consensus 164 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 32221 1123568999999999999999999998664
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-23 Score=161.66 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=101.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Cccc--------------------------------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|++. .+.. ...|.+.....++..+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999864 2210 1235555556677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHH-------HHHHHHhcCCCCCC-CeEEEEEeCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-------DELHRMLNEDELRD-AVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-------~~~~~~~~~~~~~~-~piivv~nK~D~~~ 132 (181)
..+++|||||+++|...+..+++.+|++|+|+|+.+ .+|+... +.+.. ... .+ .|+++++||+|+.+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~-~~~---~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIIL-AKT---MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHH-HHH---TTCTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHH-HHH---cCCCeEEEEEEcccCCC
Confidence 999999999999999999999999999999999987 5665332 22221 111 23 46899999999976
Q ss_pred CC----C----HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 133 AM----N----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 133 ~~----~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
.. . .+++...+....+....++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 31 1 1222222221122223478999999999999754
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=163.36 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=108.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-cc--CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+.++|+++|++++|||||+++|.+..+.. .. -|.......+...+..+++||||||+.|...+..++..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998765432 11 233333344555667899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--cCC--cceEEEEcccCCCCCHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQ--RHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~S~~~~~~i~ 167 (181)
+|+++... ....+.+..... .++|+++++||+|+..... +++...+.... ... ..++++++||++|.|++
T Consensus 82 Vda~~g~~-~qT~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVM-PQTIEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSC-TTTHHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCcc-HHHHHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99986321 111122222222 4789999999999975321 11211111110 111 24789999999999999
Q ss_pred HHHHHHHH
Q 030193 168 EGLDWLSN 175 (181)
Q Consensus 168 ~~~~~i~~ 175 (181)
++++++..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99999865
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=156.31 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=105.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--c-------------------------c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--V-------------------------T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|++..- . + ...|.+.....++..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 5678999999999999999999965420 0 0 1124555556677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCccc---HH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~ 133 (181)
..+.+||||||++|...+..+++.+|++|+|+|+.+... |. ...+.+..... .++| +++++||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence 999999999999999999999999999999999986421 11 22222222221 2455 9999999998642
Q ss_pred C----CHhHHHh----hhCCCccCC-cceEEEEcccCCCCCHHHHHH
Q 030193 134 M----NAAEITD----KLGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 134 ~----~~~~~~~----~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~ 171 (181)
. ..+++.. .+....+.. .+++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 1122222 111111211 257899999999999998654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-22 Score=150.99 Aligned_cols=156 Identities=18% Similarity=0.117 Sum_probs=105.3
Q ss_pred cce-EEEEcCCCCChHHHHhhhhcCCcc---cccCcccceEEEEEECCEEEEEEEcCCCCC---------cccccccccc
Q 030193 17 EMR-ILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQ 83 (181)
Q Consensus 17 ~~~-i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~ 83 (181)
.++ |+++|++|+|||||+|+|.+..+. ...+|.+.....+.+.+..+.+|||+|..+ |...+. .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 455 999999999999999999988753 224466677777888889999999999622 333333 457
Q ss_pred cccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh--HH----HhhhCCCccCCcceEE
Q 030193 84 NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA--EI----TDKLGLHSLRQRHWYI 155 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--~~----~~~~~~~~~~~~~~~~ 155 (181)
.+|++++|+|++++. ..... ..+...+......+.|+++|+||+|+.+....+ +. ...+. ..+.++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-----~~~~~~ 330 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-----SPIFDV 330 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-----SCEEEE
T ss_pred hCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-----CCCCcE
Confidence 899999999998765 33332 223333333222578999999999987643111 01 12221 123467
Q ss_pred EEcccCCCCCHHHHHHHHHHHhhh
Q 030193 156 QSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 156 ~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++|++++.|++++++.|.+.+..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhcc
Confidence 899999999999999999887653
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=154.33 Aligned_cols=121 Identities=18% Similarity=0.342 Sum_probs=91.6
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECC----------CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
+.+.+++|||+|+++++..|..++++++++|+|+|++ +..+|.....||..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4589999999999999999999999999999999998 778999999999888776555689999999999
Q ss_pred CCCCC----CC-------------------HhHHHhhhCC-----------CccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 129 DLPNA----MN-------------------AAEITDKLGL-----------HSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 129 D~~~~----~~-------------------~~~~~~~~~~-----------~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
|+..+ .. .++....... +......+.+++|||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98431 00 1111111000 00012346778999999999999999999
Q ss_pred HHhhh
Q 030193 175 NNIAT 179 (181)
Q Consensus 175 ~~l~~ 179 (181)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=156.01 Aligned_cols=159 Identities=20% Similarity=0.170 Sum_probs=112.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--------Cccc------------ccCcccceEEEEEECCEEEEEEEcCCCCCc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EIVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 74 (181)
...++|+++|++++|||||+++|++. .+.. ...|.+.....++..+..+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56789999999999999999999873 1111 112444555566667899999999999999
Q ss_pred ccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcc
Q 030193 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (181)
...+..++..+|++|+|+|+++... ....+++..... .++| +++++||+|+.+... .+ ++...+....+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 9888888999999999999987543 334444443322 3677 899999999975211 11 12222211112
Q ss_pred CCcceEEEEcccCCCCC------------------HHHHHHHHHHHhh
Q 030193 149 RQRHWYIQSTCATSGEG------------------LYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~~------------------i~~~~~~i~~~l~ 178 (181)
....++++++||++|.| ++++++.+.+.+.
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 22346899999999987 7888888877654
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=152.38 Aligned_cols=157 Identities=16% Similarity=0.083 Sum_probs=104.7
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCCc---ccc---------------------------------cCcccce
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VTT---------------------------------IPTIGFN 52 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~---------------------------------~~t~~~~ 52 (181)
+.+......++|+++|++++|||||+++|++... ... .-|.+..
T Consensus 16 l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~ 95 (434)
T 1zun_B 16 LGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVA 95 (434)
T ss_dssp CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCE
T ss_pred HhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEee
Confidence 3333345568999999999999999999976531 000 1133344
Q ss_pred EEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 53 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 53 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+...+..+++|||||+++|...+..++..+|++|+|+|+++... ....+++.. +... ...|+++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~-~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 96 YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYI-ASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHH-HHHT--TCCEEEEEEECTTTTT
T ss_pred eeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHH-HHHc--CCCeEEEEEEcCcCCc
Confidence 45566778999999999999999888888999999999999987542 233333322 2221 1247999999999976
Q ss_pred CCC--HhHHH----hhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 133 AMN--AAEIT----DKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 133 ~~~--~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
... .+++. .......+....++++++||++|.|++++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 321 11121 11111111123478999999999999873
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-22 Score=155.67 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=103.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--c-------------------------c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--V-------------------------T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (181)
...+||+++|++|+|||||+++|++... . + ...|.+.....++.++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 5679999999999999999999976510 0 0 1225555666778888
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHH-----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~- 134 (181)
..+.||||||+++|...+..+++.+|++|+|+|+++...+.. ............ ...|+++|+||+|+.+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999987543211 112222222221 135799999999997632
Q ss_pred -CHhHHHhhh----CCCccCCcceEEEEcccCCCCCHHH
Q 030193 135 -NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 135 -~~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
..+++.... ....+...+++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 122222211 1112223367899999999999875
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-22 Score=154.33 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=109.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------ccc------------ccCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
.++|+++|++++|||||+++|++.. +.. ...|.+.....++..+..+.+|||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998741 110 112344444456667789999999999999888
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCccCCc
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLRQR 151 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~ 151 (181)
+..+++.+|++|+|+|+++.... ...+.+.. +.. .++| +++++||+|+.+..+ . +++...+....+...
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~-~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMP-QTREHLLL-ARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCH-HHHHHHHH-HHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCH-HHHHHHHH-HHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88889999999999999874432 33334432 222 3677 789999999975211 1 122222211122223
Q ss_pred ceEEEEcccCCCCC----------HHHHHHHHHHHhh
Q 030193 152 HWYIQSTCATSGEG----------LYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~S~~~~~~----------i~~~~~~i~~~l~ 178 (181)
.++++++||++|.| ++++++.|.+.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 46899999999765 8999999988664
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-22 Score=149.18 Aligned_cols=157 Identities=15% Similarity=0.249 Sum_probs=91.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cc-------cCcccceEEEEEE----CCEEEEEEEcCCCCCc-------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-------IPTIGFNVETVEY----KNISFTVWDVGGQDKI------- 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~-------~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~------- 74 (181)
...++|+++|.+|+|||||+|++++.... .. .+|.+........ ..+.+++|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 34689999999999999999998876643 22 4566666555443 2369999999997332
Q ss_pred cccc-------ccccc-------------cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 75 RPLW-------RHYFQ-------------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.... ..++. .+|+++++++.+.. ++......+.+.+.. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 2221 22222 37799999987642 233444555555553 79999999999987543
Q ss_pred CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+........ ...+...+++++++|+++++|+++++++|.+.+
T Consensus 161 e~~~~~~~i-~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHH-HHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHH-HHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 333322221 112223456788999999999999999998764
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-22 Score=161.99 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=104.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--c--------------------------------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--T--------------------------------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~--------------------------------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++|+|||||+++|++.... . ...|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45789999999999999999999866321 0 1225555666788888
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
..++||||||+++|...+..+++.+|++|+|+|+++.. ++ ......+ ...... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHHc--CCCeEEEEEecccccchh
Confidence 99999999999999999999999999999999997531 10 1111222 222221 235699999999997632
Q ss_pred --CHhHHH----hhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 135 --NAAEIT----DKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 135 --~~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
..+++. ..+....+....++++++||++|.|++++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 112222 11111112223568999999999999865
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=148.40 Aligned_cols=115 Identities=22% Similarity=0.198 Sum_probs=85.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c----------------ccc-------cCcccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I----------------VTT-------IPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~----------------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..+|+++|++|+|||||+++|+... . .+. ..|.......+.+.++.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 567899999999999999999998631 1 000 012333445677889999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|+.+|...+..+++.+|++|+|+|+++.... .....+ ..... .++|+++|+||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~-~~~~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLM-EVTRL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHH-HHHTT---TTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHH-HHHHH---cCCCEEEEEcCcCCcccc
Confidence 9999998888899999999999999865322 222333 33333 478999999999997643
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-22 Score=157.02 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=91.0
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCcccceEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEY 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~ 58 (181)
.....++|+++|++++|||||+++|+.. .+. ....|.+.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3456789999999999999999999742 110 012355555556777
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cHH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDAV-LLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~ 131 (181)
.+..+++||||||++|...+..++..+|++|+|+|+.+.. +|+ ...+.+..... .++| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 8899999999999999999999999999999999998642 221 12222222211 3576 99999999996
Q ss_pred CCC-C---Hh----HHHhhhCCC-ccC-CcceEEEEcccCCCCCHHHHH
Q 030193 132 NAM-N---AA----EITDKLGLH-SLR-QRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 132 ~~~-~---~~----~~~~~~~~~-~~~-~~~~~~~~~S~~~~~~i~~~~ 170 (181)
... . .+ ++...+... .+. ..+++++++||++|.|+++++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 1 11 122211111 111 125789999999999998754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-22 Score=142.71 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=98.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-cc----CcccceEEEEEECCEEEEEEEcCCCC-----------Cccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI----PTIGFNVETVEYKNISFTVWDVGGQD-----------KIRP 76 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~----~t~~~~~~~~~~~~~~~~~~d~~g~~-----------~~~~ 76 (181)
+....++|+++|++|+|||||+|++++..+.. .. .|.......+...+..+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34677999999999999999999999987642 22 24445556677888999999999943 2334
Q ss_pred ccccccccccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCccCCcc
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRH 152 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~ 152 (181)
.+..+++.+|++|+|+|+++.... .....++...+... ...|+++|+||+|+......++...... ....+..+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 455556788999999999754331 11222333322211 2369999999999876433221111000 00011112
Q ss_pred eEEEEcccC-----CCCCHHHHHHHHHHHhhh
Q 030193 153 WYIQSTCAT-----SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 ~~~~~~S~~-----~~~~i~~~~~~i~~~l~~ 179 (181)
..++.++.. ++.++.++++.+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 234445444 347899999998887653
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-23 Score=165.52 Aligned_cols=158 Identities=19% Similarity=0.165 Sum_probs=89.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc---------------------------cc-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI---------------------------VT-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------------------~~-------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|++..- .+ ..-|.+.....+...+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 4567999999999999999999964210 00 0114444455566677
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~ 133 (181)
..+.|||||||++|...+..++..+|++|+|+|+++.. ++ ......+.. +.. .++| +++|+||+|+.+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~-~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYL-LRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHH-HHH---SSCCCEEEEEECGGGGTT
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHH-HHH---cCCCeEEEEEeccccccc
Confidence 89999999999999999999999999999999997531 11 111122222 221 2455 9999999999752
Q ss_pred C--CH----hHHHhhh-CCCccCCcceEEEEcccCCCCCHH--------------HHHHHHHHH
Q 030193 134 M--NA----AEITDKL-GLHSLRQRHWYIQSTCATSGEGLY--------------EGLDWLSNN 176 (181)
Q Consensus 134 ~--~~----~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~--------------~~~~~i~~~ 176 (181)
. .. .++...+ ....+...+++++++||++|.|+. .|++.|...
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 2 11 2233333 223333446789999999999998 688777654
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-21 Score=141.41 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=100.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-------cccCc----------------------ccce-------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGFN------------- 52 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~t----------------------~~~~------------- 52 (181)
...++|+++|.+|+|||||+|+|++..+. +..|+ +...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 46779999999999999999999998753 11232 1000
Q ss_pred ------------EEEEEEC-CEEEEEEEcCCCC-------------CcccccccccccccEEE-EEEECCCcccHHHHHH
Q 030193 53 ------------VETVEYK-NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (181)
Q Consensus 53 ------------~~~~~~~-~~~~~~~d~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 105 (181)
...+... ...+++|||||.. .+...+..+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0111122 3789999999953 23445667778887666 7999976433222222
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+.+.+.. .+.|+++|+||+|+.+... ..+..... .........+++++||++|.|++++++++.+
T Consensus 184 -~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 -IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp -HHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred -HHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 3344433 4789999999999976433 22222210 1111111247899999999999999998876
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=151.06 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=103.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|++. .+. ....|.+.....++..+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999864 111 01236666667788888
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cHH---HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDA-VLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~ 133 (181)
..+.+||||||++|...+..++..+|++|+|+|+.+.. +|+ ...+.+... .. .++ ++++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999997532 121 223333222 21 245 49999999999742
Q ss_pred --CCHhH----HHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 134 --MNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 134 --~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
...++ +...+....+...+++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11112 2211111112222468999999999998743
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=150.45 Aligned_cols=114 Identities=23% Similarity=0.161 Sum_probs=87.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c------------c-------cccCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~------------~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
.+..+|+++|++|+|||||+++|+... + . ....|.......+.+.++.+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 567899999999999999999998311 1 0 112355555667788899999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|...+..+++.+|++|+|+|+++..+++... .|..... .++|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHHHH----cCCCEEEEEECCCcccC
Confidence 9999999999999999999998876665543 3333333 37999999999998754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-22 Score=150.90 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=85.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-c-c--------cCcccceEEEE--EECC--EEEEEEEcCCC-------CC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T-T--------IPTIGFNVETV--EYKN--ISFTVWDVGGQ-------DK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~-~--------~~t~~~~~~~~--~~~~--~~~~~~d~~g~-------~~ 73 (181)
...++|+++|++|+|||||+++|.+.... . . .+|.+.....+ ...+ ..+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998765432 1 1 13444333332 2223 47999999998 66
Q ss_pred cccccc-------cccccc-------------cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWR-------HYFQNT-------------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+...+. .+++.+ |+++|+++.+ ..++......+...+. .++|+++|+||+|+.+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 666655 555443 3466666542 4456666655555553 47999999999998764
Q ss_pred CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+....... ....+...+++++++|++++.| ++.+..+.+.+.+
T Consensus 190 ~ev~~~k~~-i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 190 KERERLKKR-ILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHH-HHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 332221111 1222344567899999999998 7777777776643
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=135.57 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=84.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccccccccc-------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ------- 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~------- 83 (181)
.+.++|+++|++|+|||||+|+|++.... ...+ |.......+...+..+++|||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 36799999999999999999999998753 2222 444555667788999999999999887666554443
Q ss_pred --cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCC--CCeEEEEEeCCCCCC
Q 030193 84 --NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPN 132 (181)
Q Consensus 84 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~ 132 (181)
.+|++++|++++... +......+.+.+...... ..|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999987543 444433333333321112 249999999999863
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=157.74 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=108.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-------cc-----c-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IV-----T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~-----~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|++++|||||+++|++.. +. + ...|.+.....++..+..+++||||||++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998641 00 0 0113333334566677899999999999999
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~----~~~~~~~~~~~~~ 149 (181)
..+..++..+|++|+|+|+++... ....+++... .. .++| +++++||+|+.+..+ . +++...+....+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll-~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLG-RQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHH-HH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHH-HH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 888889999999999999986432 2233344322 22 3577 899999999975221 1 1222222111222
Q ss_pred CcceEEEEcccCCC--------CCHHHHHHHHHHHhh
Q 030193 150 QRHWYIQSTCATSG--------EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~~~--------~~i~~~~~~i~~~l~ 178 (181)
...++++++||++| .|++++++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 33578999999999 568999999887654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=145.00 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=84.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--------------cc-------cCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
.+..+|+++|+.|+|||||+++|++.... +. ..+.......+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 56789999999999999999999843211 00 1133344456677889999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|...+..+++.+|++++|+|+.+.... ....+|..... .++|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 999899999999999999998764332 22344444333 378999999999987
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-19 Score=143.49 Aligned_cols=115 Identities=20% Similarity=0.165 Sum_probs=87.4
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhc--CCcc------------c-------ccCcccceEEEEEECCEEEEEEEcCCCC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 72 (181)
..+..+|+++|++|+|||||+++|+. ..+. + ...|.......+.+.++.+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35678999999999999999999984 2110 1 1124444456677889999999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+|...+..+++.+|++|+|+|+.+..+.+.. ..|..... .++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHHHHH----cCCCEEEEEECCCcccc
Confidence 9999999999999999999999876665444 33433333 37899999999999764
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=136.36 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=98.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc-cc------ccC----cccc--------------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VT------TIP----TIGF-------------------------------- 51 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~------~~~----t~~~-------------------------------- 51 (181)
...++|+|+|++|+|||||+|+|++..+ +. ..| +...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4567999999999999999999999875 11 111 0000
Q ss_pred -----------------eEEEE--EE-CCEEEEEEEcCCCCC-------------cccccccccccccEEEEEEECCCcc
Q 030193 52 -----------------NVETV--EY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 52 -----------------~~~~~--~~-~~~~~~~~d~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
....+ .. .+..+.+|||||... +...+..++..+|++++|+|+++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00001 11 346799999999753 4455667788999999999985332
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCC---CCCHHHHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS---GEGLYEGLDWLS 174 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~~~~i~ 174 (181)
........+...+.. .+.|+++|+||+|+.+... ..+..... .......-++++.+|+.+ +.|++++++.+.
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 111111233344443 4789999999999976543 22222210 111111123455566666 899999999988
Q ss_pred HHhh
Q 030193 175 NNIA 178 (181)
Q Consensus 175 ~~l~ 178 (181)
+.+.
T Consensus 258 ~~~~ 261 (315)
T 1jwy_B 258 LYFK 261 (315)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=127.06 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=97.2
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECCEEEEEEEcCCCCC----------cccccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWR 79 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~----------~~~~~~ 79 (181)
+.....+|+++|++|||||||++++.+..+. ...|+.+... ..+...+ .+.+||+||... ++....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3467789999999999999999999988732 2233333221 2233333 688999999743 222222
Q ss_pred ccc---ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccCCcc
Q 030193 80 HYF---QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRH 152 (181)
Q Consensus 80 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~ 152 (181)
.++ ..++++++++|+....+... ..+...+.. .+.|+++++||+|+.+... .+..+...... ...
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~---~~~ 172 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF---NGD 172 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG---CSC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc---CCC
Confidence 333 46899999999987655432 112222222 4689999999999865321 11222222111 124
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+.++++|++++.|++++++.|.+.+.
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHh
Confidence 57889999999999999999988754
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=141.58 Aligned_cols=114 Identities=16% Similarity=0.039 Sum_probs=85.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cc------------cc-------cCcccceEEEEEECC-------EEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV------------TT-------IPTIGFNVETVEYKN-------ISFTVW 66 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~------------~~-------~~t~~~~~~~~~~~~-------~~~~~~ 66 (181)
++..+|+|+|+.|+|||||+++|+... +. +. ..|.......+.+.+ +.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 567899999999999999999997431 10 11 113333344555555 899999
Q ss_pred EcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
||||+.+|...+..+++.+|++|+|+|+++....+. ...|..... .++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS-ETVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999999999999999999999987654333 334433322 47899999999998653
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=139.62 Aligned_cols=132 Identities=27% Similarity=0.385 Sum_probs=102.9
Q ss_pred cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCCC
Q 030193 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|+++....+..+++.+++|||+|+++++..|..++++++++|+|+|+++ ..+|.....|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5667777788889999999999999999999999999999999999998 889999999999988765557
Q ss_pred CCeEEEEEeCCCCCCC-----C-C-------------------------HhHHHhhhC----CCc-----cCCcceEEEE
Q 030193 118 DAVLLVFANKQDLPNA-----M-N-------------------------AAEITDKLG----LHS-----LRQRHWYIQS 157 (181)
Q Consensus 118 ~~piivv~nK~D~~~~-----~-~-------------------------~~~~~~~~~----~~~-----~~~~~~~~~~ 157 (181)
++|++||+||+|+... . . ..+....+. ... -....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 8999999999998421 0 0 001111110 000 0113577889
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|||+++.||+++|.++.+.+..
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=145.87 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=105.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccce-E---------EE---------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN-V---------ET--------------------------- 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~-~---------~~--------------------------- 55 (181)
...++|+|+|++|+|||||+|+|++..+. +..|++... . +.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 57899999999999999999999988743 334433110 0 00
Q ss_pred ------------------EEECC----EEEEEEEcCCCCC---cccccccccccccEEEEEEECCCcccHHHHHHHHHHH
Q 030193 56 ------------------VEYKN----ISFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110 (181)
Q Consensus 56 ------------------~~~~~----~~~~~~d~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 110 (181)
+.... ..+.+|||||... ....+..+++.+|++|+|+|++++.+...... |...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence 01110 3589999999543 34456677889999999999987766554433 3334
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCCC-----CHhH-------HHhhh---CCCccC-----CcceEEEEcccC---------
Q 030193 111 LNEDELRDAVLLVFANKQDLPNAM-----NAAE-------ITDKL---GLHSLR-----QRHWYIQSTCAT--------- 161 (181)
Q Consensus 111 ~~~~~~~~~piivv~nK~D~~~~~-----~~~~-------~~~~~---~~~~~~-----~~~~~~~~~S~~--------- 161 (181)
+.. .+.|+++|+||+|+.... ..++ +.... ...... ....+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 433 367899999999986432 1111 21110 001111 123468899999
Q ss_pred -----CCCCHHHHHHHHHHHhh
Q 030193 162 -----SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 -----~~~~i~~~~~~i~~~l~ 178 (181)
++.|++++++.+.+.+.
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.1e-19 Score=128.94 Aligned_cols=118 Identities=11% Similarity=0.111 Sum_probs=81.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc--ccC--cccceEEEEEECCEEEEEEEcCCCCCcccccc-------c--c
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR-------H--Y 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------~--~ 81 (181)
...++|+++|.+|+|||||+|+|++..+.. ..+ |.......+...+..+.+|||||..++..... . .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 357899999999999999999999887532 222 33344455677889999999999876653322 1 1
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC--CeEEEEEeCCCCCCC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD--AVLLVFANKQDLPNA 133 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~ 133 (181)
...+|+++||+|++.. ++......|...+......+ .|+++|+||+|+...
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2469999999998653 34444333333333211122 699999999998753
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-18 Score=135.45 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=86.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------------------CcccccC-------cccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------------------EIVTTIP-------TIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------------------~~~~~~~-------t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..||+|+|+.++|||||..+|+.. .+.+..+ |+......+.++++.++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 45789999999999999999999521 1112111 4445567789999999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
||.+|.....+.++-+|++|+|+|+.+--. .+....|..... .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~-~qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVE-AQTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSC-HHHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcc-cccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999975432 333445554444 48999999999997643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-19 Score=135.28 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=95.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cc-c-Ccccc-----------------------------------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT-I-PTIGF----------------------------------------- 51 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~-~-~t~~~----------------------------------------- 51 (181)
.-..|+|+|++|||||||+|+|++..+. .. . .|...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4559999999999999999999997652 11 0 01000
Q ss_pred -----------e--EEEEEE-CCEEEEEEEcCCCCCc-------------ccccccccccccEEEEEEECCCcccHHHHH
Q 030193 52 -----------N--VETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR 104 (181)
Q Consensus 52 -----------~--~~~~~~-~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 104 (181)
. ...+.. ....+++|||||..++ ......|++.+|++|+|+|+++........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0 011111 2357899999997766 555677889999999999986544332222
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 105 DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 105 ~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
..+...+.. .+.|+++|+||+|+.+... ..+..... ....+.+|+++|++++.++++.+..
T Consensus 193 ~~l~~~~~~---~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 193 IKISREVDP---SGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHSCT---TCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHhcc---cCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCCH
Confidence 223333332 4689999999999976432 22222211 2233456888999998887765444
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=130.88 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=104.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-EEEEEEEcCCCCCc----cccccc---cccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPLWRH---YFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~----~~~~~~---~~~~~d 86 (181)
..|+++|++|||||||++++.+.... .. ..|.......+...+ ..+.+||+||.... ...... ....++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 46899999999999999999987532 11 223344444555554 78999999997432 112222 235699
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
.++.++|++ ...+.....++.+..... .....|.++|+||+|+......+++...+ +..+++++.+||+++.|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence 999999997 555555554443332210 01257899999999987642222333322 22345789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 312 i~eL~~~i~~~l~~ 325 (416)
T 1udx_A 312 LPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=118.67 Aligned_cols=173 Identities=21% Similarity=0.331 Sum_probs=116.0
Q ss_pred HHHHHhhhccccceEEEEcCC-CCChHHHHhhhhcCCcc--------cccCcccceE-------EEEEE-----------
Q 030193 6 TKLFSKLFAKKEMRILMVGLD-AAGKTTILYKLKLGEIV--------TTIPTIGFNV-------ETVEY----------- 58 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~-~~GKSsli~~l~~~~~~--------~~~~t~~~~~-------~~~~~----------- 58 (181)
++++.+......++++++||. -.=..+|+.++....-. ......+-.+ ..++.
T Consensus 5 ~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er 84 (227)
T 3l82_B 5 TSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKER 84 (227)
T ss_dssp CCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-----
T ss_pred HHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHh
Confidence 345667777889999999983 34556899988775411 1111111100 01111
Q ss_pred -----CC----EEEEEEE------cCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHH---HHHhcCCC-CCCC
Q 030193 59 -----KN----ISFTVWD------VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRDA 119 (181)
Q Consensus 59 -----~~----~~~~~~d------~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~ 119 (181)
++ -++-... .+|++..+..|.+|+.++|++|||+|.++.+.++ ..+.+ ..++.... ..+.
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~ga 163 (227)
T 3l82_B 85 DRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGR 163 (227)
T ss_dssp --------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCS
T ss_pred hhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCC
Confidence 00 1112223 3378899999999999999999999999876554 44444 44454432 3689
Q ss_pred eEEEEEeCC-CCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 120 VLLVFANKQ-DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 120 piivv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|++|++||. |+.......++...+.+..+ .+.|.+..|||++|+|+.+.++||.+.+.+|
T Consensus 164 pLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 164 PLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp CEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred eEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 999999995 78888899999999998877 4799999999999999999999999988765
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=132.57 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=95.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-------cccCc----------------------ccce-------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGFN------------- 52 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~t----------------------~~~~------------- 52 (181)
...++|+|+|.+|+|||||+|+|++..+. +..|+ +...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998753 11222 1000
Q ss_pred ------------EEEEEEC-CEEEEEEEcCCCC-------------Cccccccccccccc-EEEEEEECCCcccHHHHHH
Q 030193 53 ------------VETVEYK-NISFTVWDVGGQD-------------KIRPLWRHYFQNTQ-GLIFVVDSNDRDRVVEARD 105 (181)
Q Consensus 53 ------------~~~~~~~-~~~~~~~d~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 105 (181)
...+... ...++||||||.. .+......|+..++ ++++|+|++.. +.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchhHH
Confidence 0111222 4689999999953 23345556666555 55556666532 222211
Q ss_pred -HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcc-eEEEEcccCCCCCHHHHHHHHHH
Q 030193 106 -ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 -~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.+.+.+.. .+.|+++|+||+|+.+... ..++... .......+ .+++++||+++.|++++++++.+
T Consensus 187 ~~i~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~--~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN--KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCT---TCTTEEEEEECGGGSCTTCCCHHHHTT--CSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCc---CCCceEEEeccccccCcchhHHHHHhC--CcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 13333332 4789999999999976433 2222221 11111123 46889999999999999998876
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-19 Score=131.42 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=79.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC-Ccccc---------cCcccceEEEEE----ECCEEEEEEEcCCC-------CC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG-EIVTT---------IPTIGFNVETVE----YKNISFTVWDVGGQ-------DK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~---------~~t~~~~~~~~~----~~~~~~~~~d~~g~-------~~ 73 (181)
.-.++|+++|++|+|||||++++.+. .++.. .++.......+. .....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 33321 122222222222 22468999999997 55
Q ss_pred cccccc-------ccccc-------------ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWR-------HYFQN-------------TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..... .+++. ++.++|+.+++. .++......+.+.+. .+.|+++|+||.|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCCH
Confidence 554443 34332 234666666532 123333323333333 36799999999998753
Q ss_pred CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+...... .....++..+++++++||+++ |++++|..+.+.+.+
T Consensus 171 ~e~~~~~~-~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKK-RILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHH-HHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 22211111 111122333567899999999 999999999887754
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-18 Score=129.83 Aligned_cols=80 Identities=30% Similarity=0.350 Sum_probs=47.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEE--E-------------------EC---CEEEEEEEcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETV--E-------------------YK---NISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~--~-------------------~~---~~~~~~~d~~g 70 (181)
++|+++|.+|+|||||+|+|++.... +..| |.+...... . .. ...+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987732 2222 332222211 1 11 36899999999
Q ss_pred CCC----cccc---cccccccccEEEEEEECCCc
Q 030193 71 QDK----IRPL---WRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 71 ~~~----~~~~---~~~~~~~~d~~i~v~d~~~~ 97 (181)
... .+.. ...+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 2222 22456899999999999764
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-18 Score=141.27 Aligned_cols=112 Identities=19% Similarity=0.134 Sum_probs=85.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------cccc-------cCcccceEEEEEEC----------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT-------IPTIGFNVETVEYK---------------- 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~-------~~t~~~~~~~~~~~---------------- 59 (181)
.+..||+|+|++|+|||||+++|+... +.+. ..|.......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 567899999999999999999998641 1111 11333333444443
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
++.++||||||+.+|...+..+++.+|++|+|+|+.+..+++.... |..... .++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH----cCCCeEEEEECCCcc
Confidence 6899999999999999999999999999999999998777765443 333333 478999999999986
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=123.52 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=98.9
Q ss_pred HHHhhhhcCCcc--cccCcccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc-cHHHHHHHH
Q 030193 32 TILYKLKLGEIV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDEL 107 (181)
Q Consensus 32 sli~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~ 107 (181)
+|+.+++.+.|. .+.||.+..+. +.. .+..+++||+ +++|+.++..+++++|++|+|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888875 45688884443 332 1237999999 9999999999999999999999999887 677777776
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 108 HRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
..... .++|+++|+||+|+.+... .+++...+.. . +++++|||++|.|+++++..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 65432 4799999999999975432 2223333221 1 47899999999999999988754
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=133.48 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=82.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc----cccCcccceEEEEE---------------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVE--------------------------------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~~~t~~~~~~~~~--------------------------------- 57 (181)
...++|+|+|.+|+|||||+|+|++..+. +..|++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998752 33333321110000
Q ss_pred -----ECC---EEEEEEEcCCCCC-----------cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC
Q 030193 58 -----YKN---ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (181)
Q Consensus 58 -----~~~---~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
... ..+.+|||||... +...+..++..+|++++|+|+++.........++ +.+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l-~~l~~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAI-GALRG---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHH-HHTTT---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHH-HHHHh---cC
Confidence 000 3589999999764 4455566778899999999998754444444444 33443 36
Q ss_pred CeEEEEEeCCCCCCCCCHhHHH
Q 030193 119 AVLLVFANKQDLPNAMNAAEIT 140 (181)
Q Consensus 119 ~piivv~nK~D~~~~~~~~~~~ 140 (181)
.|+++|+||+|+.+.....++.
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~~ 240 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRVY 240 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHHH
Confidence 8999999999998654444443
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=128.33 Aligned_cols=157 Identities=13% Similarity=0.207 Sum_probs=75.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc---------cCcccceEEEE--E--ECCEEEEEEEcCCCCCccc-----
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVETV--E--YKNISFTVWDVGGQDKIRP----- 76 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~t~~~~~~~~--~--~~~~~~~~~d~~g~~~~~~----- 76 (181)
.-.++|+++|++|+|||||+++|++..+... .++.......+ . .....+++||++|...+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3456899999999999999999998775311 12222221111 1 1235789999999765321
Q ss_pred --------------------ccccccccccE--EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 77 --------------------LWRHYFQNTQG--LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 77 --------------------~~~~~~~~~d~--~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
....++.++++ ++|+++++ ..++......|...+. .++|+|+|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt-~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS-GHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC--CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc-ccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 11234455554 44444442 1345555444444454 379999999999987543
Q ss_pred CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+........ ...+...+++++++|++++.++++++..+.+.+
T Consensus 184 ev~~~k~~i-~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHH-HHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHH-HHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 222211111 112223356788999999999999888777653
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-17 Score=115.02 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=93.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-------cccCcc----------cceEEEEE------------------E
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE------------------Y 58 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~t~----------~~~~~~~~------------------~ 58 (181)
..+..+|+++|.+|+|||||+++|++.... ...+.. +.....++ .
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 356789999999999999999999864210 111110 11111111 1
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCH
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNA 136 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~ 136 (181)
.+..+.+|||+|+..... .+....+.+++|+|+.+.... ... +... .+.|+++|+||+|+.+. ...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHH
Confidence 346788999999521111 111356889999998754321 111 1111 24788999999998643 244
Q ss_pred hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++...+.. . ...++++++|+++|.|++++++++.+.+..
T Consensus 175 ~~~~~~~~~--~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 175 EKMKADAKL--I-NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH--H-CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH--h-CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444333211 1 124578999999999999999999987653
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-17 Score=124.76 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=94.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCcccc-------------------eEE-------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIGF-------------------NVE------------- 54 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~~t~~~-------------------~~~------------- 54 (181)
.+...|+++|.+|+|||||+++|... .. .+..|+... ...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 45678999999999999999999632 11 011111000 000
Q ss_pred ---------EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 55 ---------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 55 ---------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
.++..++.+.|+||||... ........+|++++|+|+...+.++... ....+.|+++|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVl 224 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEE
Confidence 0122568899999999432 2223447899999999987544331111 111346999999
Q ss_pred eCCCCCCCCCHh----HHHhhhCCC--ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 126 NKQDLPNAMNAA----EITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 126 nK~D~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
||+|+....... ++...+... ....++.+++++||++|.|+++++++|.+.+.
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 999986532222 222221100 01122457999999999999999999988764
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=120.95 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=87.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC------c--ccccCccc--------------------ceEE--------------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTIG--------------------FNVE-------------- 54 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~------~--~~~~~t~~--------------------~~~~-------------- 54 (181)
...|+++|++|||||||+|++.+.. . ....|+.. ..+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 6889999999999999999998621 0 01111100 0000
Q ss_pred -------EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030193 55 -------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 55 -------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
.++..+..+.++||+|-... .......+|++++|+|+......+.... .+ ...|.++|+||
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK 221 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTK 221 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECC
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEee
Confidence 00125678899999995321 2334578999999999975432211111 11 24588999999
Q ss_pred CCCCCCCCH----hHHHhhhCCCcc--CCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 128 QDLPNAMNA----AEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 128 ~D~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+|+.+.... .++...+..... .....+++.+|+++|.|+++++++|.+.+
T Consensus 222 ~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 222 SDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 998643211 122222221100 11234788999999999999999998865
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-17 Score=133.37 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=111.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC--------C------cccccC-------cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG--------E------IVTTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~--------~------~~~~~~-------t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
..||+|+|+.++|||||..+|+.. . +.+..+ |+......+.++++.++|+|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999999631 0 111111 3444455678899999999999999999
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCc-----
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS----- 147 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~----- 147 (181)
....+.++-+|++++|+|+.+--. .+....|..... .++|.++++||+|.....- .+++...+....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~-~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQ-AQTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTC-SHHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 999999999999999999975321 123344544443 3789999999999764321 222322222110
Q ss_pred ---------------------------------------------------cCCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 148 ---------------------------------------------------LRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 148 ---------------------------------------------------~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
....-.|++..||+++.|++.+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 00112577889999999999999999987
Q ss_pred hhh
Q 030193 177 IAT 179 (181)
Q Consensus 177 l~~ 179 (181)
+..
T Consensus 237 ~p~ 239 (638)
T 3j25_A 237 FYS 239 (638)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.3e-15 Score=121.01 Aligned_cols=113 Identities=18% Similarity=0.116 Sum_probs=81.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--------------cccccC-------cccceEEEEEEC-------CEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTTIP-------TIGFNVETVEYK-------NISFTVW 66 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--------------~~~~~~-------t~~~~~~~~~~~-------~~~~~~~ 66 (181)
++..||+|+|+.++|||||+.+|+... +.+..+ |+......+.++ ++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 566799999999999999999996311 111111 222333444443 6899999
Q ss_pred EcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
|||||.+|.....+.++-+|++|+|+|+.+--. .+....|..... .++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-~qT~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-PQSETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEccccccC
Confidence 999999999999999999999999999975322 233344555444 3799999999999754
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=111.24 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=74.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECCEEEEEEEcCCCCCcc-------ccccccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d 86 (181)
..+|+++|.||+|||||+|+|++.... .. ..|.+.....+.+.+.+++++|+||-.... ...-...+.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 348999999999999999999987643 33 347777777888999999999999942211 11223457899
Q ss_pred EEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 87 GLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 87 ~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
++++|+|++++..- +.+...+...- ....+.|.++++||.|.
T Consensus 152 ~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred ccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence 99999999876322 22222222211 11124566666777764
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=113.53 Aligned_cols=111 Identities=23% Similarity=0.382 Sum_probs=89.0
Q ss_pred cCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHH---HHhcCCC-CCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 030193 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDK 142 (181)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piivv~nK-~D~~~~~~~~~~~~~ 142 (181)
.+|++..+..|..|+.++|++|||+|.++.+.++ ..+.+. .++.+.. ..+.|++|++|| .|+.......++...
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578899999999999999999999999887654 333222 3443221 257999999997 589888899999999
Q ss_pred hCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
+++..+. +.|.+..|||.+|+|+.+.++|+.+.+.+|
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 9988774 799999999999999999999999988765
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-16 Score=116.71 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=91.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCcc---------------------cceEEE----------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTI---------------------GFNVET---------- 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~~t~---------------------~~~~~~---------- 55 (181)
.+...|+++|++|+||||+++.+.+. .. .+..+.. ......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 56678999999999999999999631 11 0111100 000000
Q ss_pred ----------EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+...++.+.++||||....... ....+|++++|+|+.....++.... .. .+.|.++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~ 201 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVI 201 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEE
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEE
Confidence 0134678999999997554432 3578999999999964432111000 00 146889999
Q ss_pred eCCCCCCCCCHh----HHHhhhCC-C-ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 126 NKQDLPNAMNAA----EITDKLGL-H-SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 126 nK~D~~~~~~~~----~~~~~~~~-~-~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
||+|+....... ++...+.. . ....+..+++++||++|.|+++++++|.+.+.
T Consensus 202 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 202 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999987532222 22221111 1 00112347899999999999999999988653
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=121.89 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=97.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc-c-cccCccc------------------------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIG------------------------------------------ 50 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~~~~t~~------------------------------------------ 50 (181)
..-++|+|+|.+++|||||+|+|++..+ + ...+++.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999765 1 1111110
Q ss_pred ----------ceEEEEEEC-CEEEEEEEcCCCCC-------------ccccccccc-ccccEEEEEEECCCcccHHHHHH
Q 030193 51 ----------FNVETVEYK-NISFTVWDVGGQDK-------------IRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARD 105 (181)
Q Consensus 51 ----------~~~~~~~~~-~~~~~~~d~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 105 (181)
.....+... ...+.|+||||-.. .......|+ ..+|++++|+|++....-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l- 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence 001112222 23688999999533 112233333 4689999999997643222211
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.+...+.. .+.|+++|+||+|+.+.... ..+... ..........+++++||++|.|++++++.+.+
T Consensus 208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 23344443 47899999999999865332 222221 11111112346889999999999999998876
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-16 Score=116.15 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=93.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhh-----cCCcc--cccCccc-c------------eEEEE------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK-----LGEIV--TTIPTIG-F------------NVETV------------------ 56 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~-----~~~~~--~~~~t~~-~------------~~~~~------------------ 56 (181)
.+...+++.|.+|+||||+++.+. +.... +..+... . .....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 567788899999999999999997 44321 2111100 0 00000
Q ss_pred ------------E-ECCEEEEEEEcCCCCCcccccc------cccccccEEEEEEECCCcccHHHHHHH---HHHHhcCC
Q 030193 57 ------------E-YKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDE---LHRMLNED 114 (181)
Q Consensus 57 ------------~-~~~~~~~~~d~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~ 114 (181)
. ..++.+.+|||||......... ..+.. +++++++|+....+....... .......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~- 169 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR- 169 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-
Confidence 0 0135899999999866543221 23355 899999998543322222211 1111111
Q ss_pred CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-C----c------------------cC--CcceEEEEcccCCCCCHHHH
Q 030193 115 ELRDAVLLVFANKQDLPNAMNAAEITDKLGL-H----S------------------LR--QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 115 ~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~----~------------------~~--~~~~~~~~~S~~~~~~i~~~ 169 (181)
.+.|+++|+||+|+......+++...+.. . . ++ ....+++++|++++.|++++
T Consensus 170 --~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 170 --LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp --HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred --cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence 36899999999998754322111111000 0 0 00 11236789999999999999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
+++|.+.+.
T Consensus 248 ~~~i~~~~~ 256 (262)
T 1yrb_A 248 ETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988764
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-14 Score=107.48 Aligned_cols=80 Identities=23% Similarity=0.247 Sum_probs=57.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-ccc--CcccceEEEEEECC-----------------EEEEEEEcCCCCCcc-
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR- 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~~- 75 (181)
.++|+++|.+|+|||||+|++++..+. ... .|.+.+...+...+ ..+++||+||..++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987642 222 24444444444443 579999999987653
Q ss_pred ---cc---cccccccccEEEEEEECCC
Q 030193 76 ---PL---WRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 76 ---~~---~~~~~~~~d~~i~v~d~~~ 96 (181)
.. +..+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2234689999999999975
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=102.54 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=84.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCccc----------------ceEEEEEEC------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG----------------FNVETVEYK------------------ 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~----------------~~~~~~~~~------------------ 59 (181)
.+.++|+++|++|||||||+++|+...+.. ..++.+ .....++..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 467899999999999999999998764321 111111 111112100
Q ss_pred --CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CC
Q 030193 60 --NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MN 135 (181)
Q Consensus 60 --~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~ 135 (181)
+..+.++|++|.-.... .+-...+..+.++|+........ .....+ +.|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~------~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGIM------KTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHHH------TTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhHh------hcCCEEEEeccccCchhHHH
Confidence 11455666665311111 11123445566777532111100 001111 4678999999998643 23
Q ss_pred HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+++...... + ..+.+++++||++|.|++++++++.+.+..
T Consensus 184 ~~~~~~~~~~--~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKR--I-NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHH--H-CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--h-CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3433332211 0 123579999999999999999999987754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=103.91 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=55.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEE---------------------CCEEEEEEEcCCCCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY---------------------KNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~---------------------~~~~~~~~d~~g~~~ 73 (181)
++|+++|.+|+|||||+|++++.... ...| |...+...... .+..+++||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999999876421 2222 33333333322 246799999999865
Q ss_pred ccc-------ccccccccccEEEEEEECCC
Q 030193 74 IRP-------LWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 ~~~-------~~~~~~~~~d~~i~v~d~~~ 96 (181)
+.. .+..+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 431 12234689999999999975
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=102.58 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=88.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc------CCcc--cccCcc--------------c-----ceEEE------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPTI--------------G-----FNVET------------ 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~--~~~~t~--------------~-----~~~~~------------ 55 (181)
.....++++|++|||||||++.+.+ .... ...++. + ...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 2211 111100 0 00000
Q ss_pred ----------EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
++..+..+.++||+|-..-.. .....+|.+++|+|+...+..+...... ...+.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEE
Confidence 122578899999999643221 2346799999999986432211110000 124667888
Q ss_pred eCCCCCCCCC-----HhHHHhhhCCCcc--CCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 126 NKQDLPNAMN-----AAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 126 nK~D~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
||+|+..... .+++......... .....+++.+|++++.|++++++.|.+...
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999754221 1222222211110 011236788999999999999999987653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=96.67 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCCcccccccccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030193 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~ 146 (181)
++++......+++++|++++|+|+.++. ++..+..|+..... .++|+++|+||+|+.+... .+++...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~---- 137 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI---- 137 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH----
Confidence 7888888888999999999999999885 88877777764433 4799999999999975421 1222221
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++..+++++++||++|.|++++++.+..
T Consensus 138 -~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 138 -YRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp -HHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred -HHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 1223457999999999999999987653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=99.59 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=52.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-ccc--CcccceEEEEEEC-----------------CEEEEEEEcCCCCCc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~~ 74 (181)
....+|+++|.+|+|||||+|++++..+. ... .|.+.+...+... ...+++||+||...+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45789999999999999999999988652 222 2444444444433 236999999997664
Q ss_pred cc-------ccccccccccEEEEEEECCCcc
Q 030193 75 RP-------LWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 75 ~~-------~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
.. .+..+++.+|++++|+|+.+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 43 3556678999999999997543
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=91.47 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=88.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhh------cCCcc--cc---cCc-----------ccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~--~~---~~t-----------~~~~~~~~----------------- 56 (181)
....|+++|.+||||||++++|. +.... +. .+. .++.+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999998 44321 11 110 01111110
Q ss_pred EECCEEEEEEEcCCCCCccc-ccc---cc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCC
Q 030193 57 EYKNISFTVWDVGGQDKIRP-LWR---HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D 129 (181)
...++.+.|+||||...... .+. .+ ...+|.+++|+|+............+.+ .+|+ ++|+||.|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCCc
Confidence 11567899999999754221 111 11 1268999999999764332122122211 2564 89999999
Q ss_pred CCCCCC-HhHHHhhhCCCcc-----CC-cc----eEEEEcccCCCCC-HHHHHHHHHHH
Q 030193 130 LPNAMN-AAEITDKLGLHSL-----RQ-RH----WYIQSTCATSGEG-LYEGLDWLSNN 176 (181)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~~~-----~~-~~----~~~~~~S~~~~~~-i~~~~~~i~~~ 176 (181)
...... ...+...++.+.. +. .+ .+.+.+|+..|.| ++++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 875433 2233344433220 00 00 1234579999999 99999998754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=89.37 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=71.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-----cCcccceEEEE--EECC--EEEEEEEcCCCCCcc------------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV--EYKN--ISFTVWDVGGQDKIR------------ 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~--~~~~--~~~~~~d~~g~~~~~------------ 75 (181)
.++++|+|++|+|||||++.+.+..+... .+........+ .... ..++++|++|-....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 34699999999999999999998754211 11111111112 1122 378999999853220
Q ss_pred --cccc----cc---------ccc--ccE-EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh
Q 030193 76 --PLWR----HY---------FQN--TQG-LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137 (181)
Q Consensus 76 --~~~~----~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~ 137 (181)
..+. .+ ... .|. ++++.|... ++...+..+.+.+. .++|+|+|.||+|.....+..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHH
Confidence 0111 11 112 233 445555532 33344445555554 479999999999987654444
Q ss_pred HHHhhhCCCccCCcceEEEEccc
Q 030193 138 EITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.+...+. ..+...+++++.+|.
T Consensus 196 ~l~~~I~-~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 196 KFKIKIT-SELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHH-HHHBTTBCCCCCCC-
T ss_pred HHHHHHH-HHHHHcCCcEEecCC
Confidence 3333221 112334555555554
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-11 Score=89.81 Aligned_cols=100 Identities=19% Similarity=0.141 Sum_probs=67.2
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcc
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSL 148 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (181)
..++|++.+..+.+.++++++|+|+.++. ......+.+++ .+.|+++|+||+|+.+... .+++.... ...+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l-~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWM-RYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHH-HHHH
Confidence 46789999999999999999999998753 11112233332 3689999999999976432 22222111 0011
Q ss_pred CCcce---EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 149 RQRHW---YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~---~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+..++ +++.+||++|.|++++++.+.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 11222 688999999999999999997754
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=84.03 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=59.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc-c-cccC--cccceEEEEEECC-----------------EEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~ 73 (181)
....+++++|++|+|||||+|+|++... . .+.| |...+...+...+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999999764 2 3333 4455555555554 5789999999432
Q ss_pred -------cccccccccccccEEEEEEECCC
Q 030193 74 -------IRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 -------~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
....+...++.+|.+++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455678999999999863
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=89.29 Aligned_cols=113 Identities=9% Similarity=0.118 Sum_probs=67.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC------Cc-ccccCcccceEEEEEECCEEEEEEEcCCCCCccc--------cccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG------EI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~------~~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~ 80 (181)
...+|+++|.+|+|||||+|+|++. .. .+..|.+......+... ..+.++||||-..... ....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 3568999999999999999999986 22 13333222333333332 2389999999432211 1111
Q ss_pred cc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 81 YF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 81 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
++ ...+.++|++++...--+..... ...+.. .+.|+++++||.|..+..
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~~---~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIKG---GRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE--EEEEES---SSEEEEEEECTTSCEEEE
T ss_pred HhcccccCceEEEEcCCceEEECCEEE--EEEccC---CCceEEEEecCCcccccc
Confidence 21 56899999999842210001100 112222 468999999999987643
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-10 Score=89.18 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=68.4
Q ss_pred CCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc
Q 030193 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHS 147 (181)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~ 147 (181)
..+++|++...++++.++++++|+|+.++.+ .....+.+.+ .+.|+++|+||+|+.+... .+.+.... ...
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l-~~~ 127 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWM-RRM 127 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHH-HHH
Confidence 3578899999999899999999999988653 1222233332 3689999999999976532 22222111 011
Q ss_pred cCCcce---EEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 148 LRQRHW---YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~---~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++..++ +++.+||++|.|++++++.+.+...
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 112222 6889999999999999999987654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=80.42 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=64.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc---------cC-cccceEEEEEE----CCEEEEEEEcCCCCCccc------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---------IP-TIGFNVETVEY----KNISFTVWDVGGQDKIRP------ 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~-t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~------ 76 (181)
.++++++|++|+|||||+|.+++...+.. .+ +.......+-. -...++++|++|-.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999987543211 11 11111111111 123789999998321000
Q ss_pred -c---------------------cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 77 -L---------------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 77 -~---------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
. ....+..+++.++++|... .++...+..+.+.+.. ..++++|++|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 0 0011223578889999641 2223333444444543 38999999999987654
Q ss_pred C
Q 030193 135 N 135 (181)
Q Consensus 135 ~ 135 (181)
+
T Consensus 157 e 157 (270)
T 3sop_A 157 E 157 (270)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.7e-10 Score=84.06 Aligned_cols=115 Identities=8% Similarity=0.134 Sum_probs=66.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC------cc--cccCcccceEEEEEECCEEEEEEEcCCCCCcccc--------cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE------IV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WR 79 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~ 79 (181)
...+|+++|.+|+|||||+|++++.. .. +..|.+......+... ..+.++||||-...... ..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 35789999999999999999998753 11 2223221222223322 23899999994322111 11
Q ss_pred cc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030193 80 HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (181)
Q Consensus 80 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 136 (181)
.+ ....+..+|++++...--+.... ....+.. .+.|+++++||.|..+..+.
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~---~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG---GRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES---SSEEEEEEECTTSCEEEEEH
T ss_pred HhccccccCceEEEEcCCCEEEEcceE--EEEEecC---CCceEEEEecCccccccccH
Confidence 11 24578889999884211000100 0112222 46899999999998765433
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=78.86 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=83.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc-------cCcccceEEEEEECCE-EEEEEEcCCCCCcccccccc-----c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-------IPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHY-----F 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~-----~ 82 (181)
....++++|++|+|||||+|.+.+....+. .++... ...+..... .++++|++|..........+ +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 456899999999999999999998543211 111111 111222222 58999999843211111111 2
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCCc---cCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP---------NAMNAAEITDKLGLHS---LRQ 150 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~---------~~~~~~~~~~~~~~~~---~~~ 150 (181)
...+..++ ++.... +..+..+.+.+.. .+.|+++|.||.|+. +....+++...+.... +..
T Consensus 147 ~~~~~~~~-lS~G~~---~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRF---KKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCC---CHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCc---cHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23455554 676521 1222223333332 368999999999864 2222232222111100 000
Q ss_pred ---cceEEEEccc--CCCCCHHHHHHHHHHHhh
Q 030193 151 ---RHWYIQSTCA--TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 151 ---~~~~~~~~S~--~~~~~i~~~~~~i~~~l~ 178 (181)
....++.+|+ .++.|++++.+.+.+.+.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 0124677899 456679999999988764
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-09 Score=79.15 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=67.6
Q ss_pred EEEcCCCC-CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030193 65 VWDVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 65 ~~d~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
+-..|||. .........+..+|+++.|+|+.++.+..+ ..+.+++ .++|.++|+||+|+.+....+.+...+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44578885 344555667789999999999988765532 1233333 368999999999998643333333332
Q ss_pred CCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+..+++++.+|++++.|++++++.+.+.+.
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 123446889999999999999998887664
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-08 Score=73.81 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=37.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc--cC--cccceEEEEEECCEEEEEEEcCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~d~~g~~ 72 (181)
...++|+++|.+|+|||||+|++.+...... .| |.... .+.. +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 4678999999999999999999998774322 22 22222 2222 3468999999953
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.4e-09 Score=76.34 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccce--EEEEEECCEEEEEEEcCCCCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++++++|.+|+|||||+|++.+.......++.+.. ...+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 69999999999999999999988764333222211 112222 34789999999543
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.7e-07 Score=72.95 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=41.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-ccc-----CcccceEEEEE---ECCEEEEEEEcCCCCC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI-----PTIGFNVETVE---YKNISFTVWDVGGQDK 73 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~-----~t~~~~~~~~~---~~~~~~~~~d~~g~~~ 73 (181)
....+.|+|+|.+|+|||||+|+|++.... ... .|.+....... ..+..+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 356688999999999999999999987632 221 23333222111 2467899999999543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=67.13 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=62.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--c---ccC-----------cccceEEEE-----------------E
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIP-----------TIGFNVETV-----------------E 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~------~~~~--~---~~~-----------t~~~~~~~~-----------------~ 57 (181)
...|+++|++|+||||++..|.. ..+. . ..+ ..+...... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999998863 2210 1 111 011111110 0
Q ss_pred ECCEEEEEEEcCCCCCcccc----cc--cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 58 YKNISFTVWDVGGQDKIRPL----WR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
..++.+.|+||+|....... .. .....+|.+++|+|+...+.-......+.+ .-.+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~-------~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE-------ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH-------SCTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh-------hCCCeEEEEECCCCc
Confidence 13478999999995432211 11 111357899999999754332222222222 124567999999986
Q ss_pred CC
Q 030193 132 NA 133 (181)
Q Consensus 132 ~~ 133 (181)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.34 E-value=5e-07 Score=70.39 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=62.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC------Ccc--ccc--------------------------Cccc---ceEEEE-EE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG------EIV--TTI--------------------------PTIG---FNVETV-EY 58 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~------~~~--~~~--------------------------~t~~---~~~~~~-~~ 58 (181)
...|+++|++|+||||+++.|... ... +.. .+.+ .....+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999652 110 100 0001 000000 01
Q ss_pred CCEEEEEEEcCCCCCcccc----c--ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC-e-EEEEEeCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPL----W--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDL 130 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~D~ 130 (181)
.++.+.|+||||....... . ......+|.+++|+|+..... ..... ..+. ... | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~-~~~~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQA-KAFK----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHH-HHHH----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHH-HHHh----hcccCCeEEEEeCCCC
Confidence 5678999999996542111 1 111236899999999864332 11212 2222 134 5 8999999998
Q ss_pred CC
Q 030193 131 PN 132 (181)
Q Consensus 131 ~~ 132 (181)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.34 E-value=4.7e-07 Score=73.53 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..++|+|+.|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 469999999999999999998864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-07 Score=69.45 Aligned_cols=93 Identities=8% Similarity=0.005 Sum_probs=58.5
Q ss_pred cCCCCCc-ccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030193 68 VGGQDKI-RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
Q Consensus 68 ~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~ 146 (181)
.|||... .......+.++|+++.|+|+.++.+..+.. +. + . ++|.++|+||+|+.+....+.+...+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 5776432 234455668999999999998775543211 11 1 1 689999999999986433333333221
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
..++++ .+|++++.|++++++.+.+
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 223456 8999999999999887654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-07 Score=68.36 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=57.0
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccCCcce
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~ 153 (181)
......++|.+++|+|+.+|..-.+..+.+...... .++|.++|+||+|+.+... .+++...+ +..++
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~ 151 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGY 151 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCCC
Confidence 334568899999999998654333333333332222 4789999999999987533 23343333 22234
Q ss_pred EEEEcccCCCCCHHHHHHH
Q 030193 154 YIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~ 172 (181)
+++.+|+.++.|++++++.
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 6888999999998877654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=60.59 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=53.2
Q ss_pred ccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCCcceEEE
Q 030193 81 YFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (181)
...++|.+++|.... |. +...++.++... .. .++|.++|+||+|+.+... .+++... ++..+++++
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a-~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~-----y~~~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGC-ET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDI-----YRNIGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHH-HH---HTCEEEEEEECGGGCCHHHHHHHHHHHHH-----HHTTTCCEE
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCchhHHHHHHHHHH-----HHhCCCcEE
Confidence 457899999886654 43 333333333221 11 3688899999999986532 2223332 234455788
Q ss_pred EcccCCCCCHHHHHHHH
Q 030193 157 STCATSGEGLYEGLDWL 173 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i 173 (181)
.+|++++.|++++...+
T Consensus 197 ~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHhc
Confidence 99999999999987754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.8e-06 Score=65.36 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--c---ccC-----------cccceEEE-----------------EE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIP-----------TIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~------~~~~--~---~~~-----------t~~~~~~~-----------------~~ 57 (181)
..-|+++|++|+||||++..|.. ..+. + ..+ ..+..... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 45788999999999999998862 2210 0 000 01111110 00
Q ss_pred ECCEEEEEEEcCCCCC--cc----cccccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 58 YKNISFTVWDVGGQDK--IR----PLWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~--~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
..++.+.++||||... .. ...... ....+.+++|+|+...+........+.+. -.+..+|+||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1357889999999644 11 111111 12468999999997543333333334332 245789999999
Q ss_pred CCC
Q 030193 130 LPN 132 (181)
Q Consensus 130 ~~~ 132 (181)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.89 E-value=3.7e-05 Score=56.98 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--ccc---C-----------cccceEEE-----------------EE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--TTI---P-----------TIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~------~~~~--~~~---~-----------t~~~~~~~-----------------~~ 57 (181)
...|+++|++|+||||++..+.. .... +.. + ..++.+.. ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999998863 2211 100 1 00111100 01
Q ss_pred ECCEEEEEEEcCCCCC--ccc-ccc-----cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCC
Q 030193 58 YKNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
..++.+.++||||... ... ... .....+|.+++|+|+..... .......+.. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1467899999999766 211 111 12346899999999864322 2222222211 244 67899999
Q ss_pred CCCC
Q 030193 129 DLPN 132 (181)
Q Consensus 129 D~~~ 132 (181)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.5e-07 Score=71.00 Aligned_cols=110 Identities=23% Similarity=0.238 Sum_probs=61.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE----EEEEECCEEEEEEEcCCCCC--ccccc--------c
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDK--IRPLW--------R 79 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~--~~~~~--------~ 79 (181)
......|+++|.+||||||+.++|.........++..+.. ...........+||..|.+. .+..+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3557799999999999999999997643211122211110 00001113346788888732 33333 4
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.++...++.++|+|.++. ....... |...+.. .+.+++.+-..+
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~---~~~~vv~l~~~~ 159 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQ---NGYKTFFVESIC 159 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHH---HTCEEEEEEECC
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHh---cCCcEEEEEEEC
Confidence 556667888999999876 3433333 3333332 134555444333
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.9e-05 Score=60.58 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|.|+|++++|||+|+|++++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3445779999999999999999863
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=3.4e-05 Score=55.43 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=21.3
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhh
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
+++..........|+++|++||||||+++.+.
T Consensus 17 ~~~~~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ---------CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 44444444556789999999999999999998
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.59 E-value=3.6e-05 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=55.57 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCChHHHHhhhh-------cCCcc--cccC--------------cccceEEE-----------------E
Q 030193 17 EMRILMVGLDAAGKTTILYKLK-------LGEIV--TTIP--------------TIGFNVET-----------------V 56 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~-------~~~~~--~~~~--------------t~~~~~~~-----------------~ 56 (181)
...|+++|.+|+||||++..|. +.... +..+ ..++.... .
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4568899999999999998886 33211 1111 00111100 0
Q ss_pred EECCEEEEEEEcCCCCCccc-ccc-----cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCC
Q 030193 57 EYKNISFTVWDVGGQDKIRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D 129 (181)
...++.+.|+||||...... ... .....++.+++|+|+............+.. ..+ .-+|+||.|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~--------~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE--------ALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHH--------HSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhc--------cCCCeEEEEecCC
Confidence 11467899999999654321 111 113468899999999743322222222211 233 357999999
Q ss_pred CCCC
Q 030193 130 LPNA 133 (181)
Q Consensus 130 ~~~~ 133 (181)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=4e-05 Score=52.47 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.--++++|++|||||||++.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=4.9e-05 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-.++++|++|||||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999976
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.42 E-value=6.9e-05 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.--++++|++||||||+++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446899999999999999999764
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.41 E-value=9.8e-05 Score=51.37 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=23.4
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+....--|+++|++|+|||||++.|.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34456678899999999999999999864
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.40 E-value=8.6e-05 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+|+|++|||||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999988653
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
....-|+++|++||||||+++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345578999999999999999998654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0001 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.|+++|++||||||+++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999875
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.37 E-value=8.7e-05 Score=51.88 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...--++++|++|||||||++.+.+-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445568999999999999999997643
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.37 E-value=7.1e-05 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=16.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhh-cC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK-LG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~-~~ 40 (181)
..--++++|++||||||+++.+. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34568999999999999999998 64
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.35 E-value=9.4e-05 Score=52.25 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|||||||++.+.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45568999999999999999998743
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=9.9e-05 Score=52.25 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..--++++|++|||||||++.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45578899999999999999998753
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=9.8e-05 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=19.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 344678999999999999997553
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=48.76 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCChHHHHhhh
Q 030193 18 MRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l 37 (181)
..|++.|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00018 Score=48.95 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...-.+++.|++|+|||+|++.+.+.-
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999987644
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=52.01 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
..=.++++|+.|||||||++.+.+-..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 344689999999999999999987653
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.312 Sum_probs=21.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++|||||||++.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998763
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
....|+++|++||||||+++.+.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35578999999999999999997754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=48.90 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=49.79 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=22.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|++.|++||||||+++.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999864
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=49.73 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00023 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+++.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00017 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|+++|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3557899999999999999999754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00016 Score=54.82 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.-.++++|++|+|||||+|.+.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 44789999999999999999998654
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=49.71 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998764
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=48.22 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=20.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 355789999999999999998864
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=48.15 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468999999999999999998765
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00018 Score=49.33 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=48.06 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00025 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|++.|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00048 Score=46.73 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=25.2
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+.........-.+++.|++|+|||++++.+...
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333345567999999999999999988764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
=.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998864
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00022 Score=52.24 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4468999999999999999998754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00023 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=.++++|+.|||||||++.+.+-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467899999999999999998764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999998765
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=48.87 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+...|+|.|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 55678999999999999999998764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00024 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|+|||||++.+.+-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00027 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
++|++.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00026 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+|+++|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999876
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00024 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468899999999999999998754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00025 Score=51.42 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999998754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00033 Score=47.95 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44678999999999999999998765
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00029 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
++|++.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999954
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00029 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999998764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00025 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++++|++|+||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00027 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|+|||||++.+.+-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999998864
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00027 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...-.++|+|++|+|||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4456799999999999999999875
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00036 Score=48.38 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++||||||+.+.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0003 Score=50.57 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.08 E-value=9.5e-05 Score=55.00 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|++|+|||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4578999999999999999998754
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00033 Score=47.87 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00027 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.-.++++|++|+|||||+|.+.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 44678999999999999999988653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00028 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-.++++|++||||||+++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 44557899999999999999999763
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00029 Score=51.24 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34467899999999999999998764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00033 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0003 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999998864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00025 Score=49.78 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.++++|+.|+|||||++.+.+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999876
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0003 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|||||||++.+.+-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468899999999999999998754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00036 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.272 Sum_probs=20.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
...+-|+|+|++||||||+++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455679999999999999998884
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00037 Score=48.30 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+.+.|..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00032 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999998764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00032 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.=.++++|+.|+|||||++.+.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999985
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00035 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34478999999999999999998753
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00035 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 5567899999999999999999876
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0004 Score=47.36 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00039 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|+.||||||+++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999866
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00034 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|.+.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00034 Score=51.11 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0006 Score=47.35 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00036 Score=47.72 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00043 Score=48.18 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++||||||+++.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999764
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00038 Score=48.09 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999865
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00042 Score=47.45 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00035 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..=.++++|+.|+|||||++.+.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446889999999999999999986
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00043 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|+++|+|||||+|.+..|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00036 Score=50.43 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=.++++|+.|||||||++.+.+-..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999988653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00035 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||++.+.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344688999999999999999987
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00041 Score=50.92 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999998754
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00038 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468899999999999999998754
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00044 Score=47.29 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|.+||||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998653
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00038 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-++++|++|+|||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346789999999999999999864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0006 Score=46.12 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 8 LFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+...........+++.|++|+|||+++..+...
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 333333345668899999999999999988654
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00047 Score=49.46 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+|++.|++||||||+++.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999964
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00039 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|++|+|||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4567999999999999999998 54
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00055 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998876
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00047 Score=48.32 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+|++.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999854
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00048 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00054 Score=47.38 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...|++.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 567999999999999999999765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00047 Score=46.83 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|++.|++||||||+++.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999999863
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00055 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|+++|.+||||||+++.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999854
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0005 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00049 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00049 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999854
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00051 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|++||||||+++.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999863
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00057 Score=46.92 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|++.|++||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00061 Score=50.28 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+|+|++|||||||++.+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5677899999999999999988743
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00057 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.....|+|+|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999998
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00022 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.++|+|++|||||||++.+.+-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00052 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999998865
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00048 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998854
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00034 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34578999999999999999998743
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00066 Score=47.30 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00067 Score=46.98 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+...|++.|.+||||||+++.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998864
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00058 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|++.|++||||||+++.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999964
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00043 Score=52.65 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-+++|+|++|+|||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00069 Score=47.13 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|++.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999965
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00066 Score=45.44 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00047 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=16.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00063 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|+|||||++.+.+-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999998764
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00058 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.--++++|+.|||||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3467899999999999999998754
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00047 Score=45.68 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|+|||+|++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998744
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00058 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999998854
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0008 Score=47.80 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|.+||||||+++.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999854
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0006 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+++.|++|+|||+|++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999864
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00079 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0015 Score=46.11 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0007 Score=50.88 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|||||||++.+.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999998754
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00069 Score=50.32 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=66.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--------c---ccCc-----------ccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--------T---TIPT-----------IGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------~---~~~t-----------~~~~~~~~----------------- 56 (181)
..-.++++|++||||||+++.+.+.... . ..+. .++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999642100 0 0000 01111000
Q ss_pred EECCEEEEEEEcCCCCCcccc------------cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030193 57 EYKNISFTVWDVGGQDKIRPL------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...+....++|++|....... ........+.+++++|+............+.+... ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~-------~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC-------CcEEE
Confidence 002345678999995332110 11223457888899998755433333333332221 35788
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCC
Q 030193 125 ANKQDLPNAM-NAAEITDKLGLH 146 (181)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~ 146 (181)
+||.|....- ....+....+.+
T Consensus 254 vTh~d~~a~gg~~l~i~~~~~~p 276 (304)
T 1rj9_A 254 VTKLDGTAKGGVLIPIVRTLKVP 276 (304)
T ss_dssp EECTTSSCCCTTHHHHHHHHCCC
T ss_pred EECCcccccccHHHHHHHHHCCC
Confidence 9999975332 333455555443
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00073 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999998754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00093 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...++++|++||||||++.++...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 446889999999999999998763
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0011 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.=.++|+|++||||||+++.+.+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 338999999999999999999763
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00075 Score=51.64 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3457899999999999999998754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00076 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3457899999999999999998754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00089 Score=45.79 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00074 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0007 Score=51.50 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...-.++|+|++|||||||++.+.+-.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456689999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0008 Score=45.82 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00099 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
....-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45668999999999999999999765
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00079 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999998754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00098 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00078 Score=48.61 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00064 Score=49.00 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998854
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00034 Score=48.77 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999865
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|++.|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999876
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00086 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3357899999999999999998764
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.001 Score=47.40 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...+.|++.|++||||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999863
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00093 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.001 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999865
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0011 Score=46.25 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.+++.||||+|||+++.++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888865
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0016 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++|+|++||||||+++.+.+--
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45569999999999999999998754
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00084 Score=49.82 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++|+.||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999965
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00089 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467899999999999999998754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|++.|.+||||||+++.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00094 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=19.1
Q ss_pred ccce-EEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMR-ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~-i~v~G~~~~GKSsli~~l~~ 39 (181)
.+.+ |.++|+|||||+|.+..|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444 45789999999999998864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-.|++.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0009 Score=50.22 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999965
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0014 Score=49.97 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-.++|+|++||||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999763
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.+...|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344678999999999999999874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00072 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|+.|||||||++.+.+-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3467899999999999999998754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=.++++|++|||||||++.+.+-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4468999999999999999998743
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=48.31 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999864
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999764
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0023 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+|||+++..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999988753
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0019 Score=46.82 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455668999999999999999998764
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0023 Score=46.68 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....+++.|++|+|||++++.+.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999754
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0028 Score=41.55 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.....|++.|++|+|||+++..+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 567789999999999999999987653
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0023 Score=49.62 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...=.++|+|+.||||||+++.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 33446899999999999999999764
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=51.86 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...-.++|+|+.|||||||++.+.+-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 456789999999999999999998754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=47.24 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+...|++.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 56678999999999999999998754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0029 Score=44.14 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|.+||||||+++.+...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44567899999999999999988653
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999999753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0007 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999998765
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999854
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 344688999999999999998864
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=46.02 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998653
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=49.72 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++|+.||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44688999999999999999965
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-.|+++|++||||||+.+.+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998854
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999986
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0029 Score=41.38 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45678999999999999999988764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=49.11 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=23.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.+.=+++++|+.|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=51.42 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++|+.||||||+++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44688999999999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.002 Score=44.52 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=22.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|++.|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=45.97 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...--++++|++|+|||||+..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34556899999999999999999873
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0021 Score=44.38 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+|||+|+..+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0013 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=17.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998854
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=42.59 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030193 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~ 38 (181)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999874
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0026 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5677899999999999999998864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0036 Score=49.24 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-......-+++++|++|+|||++++.+...
T Consensus 193 ~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 193 IEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33333355678999999999999999988654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0037 Score=46.14 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.|++.|++|+|||++++.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3456999999999999999999764
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0015 Score=48.11 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=20.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-+++.|+||+|||++++++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999998753
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0018 Score=48.35 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-++|.|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999865
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34478999999999999999998754
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0028 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=21.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455789999999999999999975
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4578999999999999999975
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0021 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34578999999999999999998754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998854
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0025 Score=49.78 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.+.=+++++|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456689999999999999999998764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=51.17 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=22.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...=-++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344567899999999999999998854
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0036 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999877
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0044 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.003 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+++++|++||||||++..|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998854
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 568999999999999999999764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=51.43 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0027 Score=44.52 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0031 Score=43.60 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0037 Score=43.40 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
....|+|+|++|+|||++...|...-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45578999999999999999997654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0054 Score=46.44 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+|+++|++|+||||+...+.+
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999987754
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0037 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+++.|++|+|||++++.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999975
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0049 Score=47.96 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|++.||||+|||++++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34567999999999999999999764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0028 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++|+|++|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 44678999999999999998874
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34578999999999999999998754
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0059 Score=44.92 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....+++.|++|+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999987754
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=47.26 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=23.3
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
......+++.|+||+|||++++.+...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999999999999754
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0059 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+|||++++.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=51.20 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|+|||||++.+.+-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0032 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34468999999999999999998754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0053 Score=46.56 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++|.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.006 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-|++.||||+|||++++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999999763
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0044 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
++|+|.++||||++...+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0036 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=.++++|+.|+|||||++.+.+-..
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999988643
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.004 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=18.6
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.--+++.|++|+|||+|+..+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4457899999999999987775
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0039 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|+++|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4456889999999999999998754
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0062 Score=47.54 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.0
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
..=|.|+|+.++|||+|+|.++
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3445599999999999999654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0038 Score=46.13 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhh
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
..-.++++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35578899999999999999885
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0067 Score=47.24 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.--|++.||||+|||++++++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999999764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.+++.|++|+|||++++.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998764
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=44.29 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=18.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+..-|.+.|++||||||+++.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0042 Score=50.48 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34468999999999999999998754
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0039 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..--+.|+|++|+|||||+..+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456789999999999999999764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0042 Score=47.26 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.1
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.+ .+|+|+.|+|||||++++.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 44 4699999999999999986
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0066 Score=46.73 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...--|++.||||+|||.+++++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999763
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0046 Score=49.53 Aligned_cols=26 Identities=35% Similarity=0.230 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=.++++|+.|+|||||++.+.+-..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44689999999999999999988653
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0047 Score=43.16 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0044 Score=46.04 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
--|+++|++|+||||++..+.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4578999999999999998854
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0041 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.+++.|++|+|||+|++.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999998763
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0047 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0052 Score=41.72 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
....-|++.|++|+||||++..|....
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 345678999999999999999997643
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0045 Score=45.44 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999865
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0093 Score=44.26 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0046 Score=50.25 Aligned_cols=26 Identities=35% Similarity=0.230 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=.++++|+.|+|||||++.+.+-..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44689999999999999999988643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0051 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-.+++.|++|+|||++++.+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0055 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0049 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..|++.|++|+|||++++.+.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999764
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.01 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.+++.|++|+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0061 Score=43.37 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0039 Score=55.09 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..=+|+++|++|||||||++.+.+-
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3458999999999999999999763
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.007 Score=42.81 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+..-|.+.|.+||||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5677899999999999999998864
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0091 Score=49.75 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+..-......-++++.|+||+|||++++.+...
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3333344456778999999999999999988654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0054 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~ 43 (181)
.++++|+.|+|||||++.+.+-..+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3789999999999999999886543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0059 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||+++.++.+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0036 Score=45.17 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...+++.|++|+|||++++.+.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999965
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0041 Score=49.91 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++|||||||++.|.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 45678999999999999999999764
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0077 Score=44.84 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-|+|+||+|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45789999999999999999653
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.011 Score=45.82 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.--|++.||||+|||++++++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 34567999999999999999999764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0061 Score=42.38 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.8
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030193 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~ 38 (181)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999874
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.011 Score=49.11 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+.........-+++++|++|+|||++++.+...
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3444444456778999999999999999998764
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0087 Score=44.97 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998654
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.013 Score=42.24 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.....|++.|++|+|||++++.+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 456789999999999999999987643
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0091 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
....+++.|++|+|||+++..+...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998753
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.014 Score=43.12 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||+++..+...
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 335999999999999999998764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0057 Score=46.23 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-.+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999998754
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.011 Score=46.24 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.--|++.||||+|||+|++++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45668999999999999999999763
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.01 Score=41.68 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+..-|.+.|++||||||+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 181 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 7e-51 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 3e-45 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 2e-40 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-38 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-38 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-37 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 5e-35 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-33 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 5e-33 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 1e-30 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 4e-30 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-28 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 2e-25 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-25 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 9e-25 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 1e-24 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 1e-23 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-23 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 8e-22 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-20 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 3e-20 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 8e-20 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 3e-19 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 5e-18 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 2e-17 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 5e-17 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 1e-16 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 3e-16 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 2e-14 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-13 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 3e-13 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-12 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 5e-12 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-11 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 2e-11 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 4e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 7e-11 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 4e-10 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 5e-10 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 7e-09 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 7e-09 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 1e-08 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 1e-08 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 2e-08 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 6e-08 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-07 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 3e-07 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-06 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 3e-06 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 3e-06 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 4e-06 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 1e-05 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-05 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 6e-05 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-04 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 2e-04 | |
| d1ls1a2 | 207 | c.37.1.10 (A:89-295) GTPase domain of the signal s | 4e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 6e-04 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.002 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 0.002 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 159 bits (402), Expect = 7e-51
Identities = 123/171 (71%), Positives = 147/171 (85%)
Query: 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
K+ SK+F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
DVGGQDKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
KQDLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 145 bits (366), Expect = 3e-45
Identities = 102/180 (56%), Positives = 134/180 (74%), Gaps = 1/180 (0%)
Query: 2 GLSFTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
G F+ +F KL+ KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN
Sbjct: 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ VWD+GGQ IRP WR Y+ +T +IFVVDS D+DR+ A ELH ML E+EL+DA
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
LLVFANKQD P A++A+E++ +L L L+ R W I ++ A GEG+ EGLDWL + I +
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 133 bits (334), Expect = 2e-40
Identities = 83/176 (47%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 2 GLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
G+ FT+++ +LF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59
Query: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A L
Sbjct: 60 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
L+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ + +
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 127 bits (319), Expect = 2e-38
Identities = 149/160 (93%), Positives = 155/160 (96%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 126 bits (318), Expect = 4e-38
Identities = 81/172 (47%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Query: 8 LFSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 65
+ KL + +E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + V
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNV 64
Query: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125
WD+GGQ KIRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+FA
Sbjct: 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
NKQDL A A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 125 bits (314), Expect = 1e-37
Identities = 80/165 (48%), Positives = 115/165 (69%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++ +WDVGGQ +R
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A++
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
I + L L S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 119 bits (298), Expect = 5e-35
Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 6 TKLFSKL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
+ + L KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT
Sbjct: 1 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 60
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+D+GG + R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+
Sbjct: 61 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 120
Query: 125 ANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDW 172
NK D P A++ + + GL+ L R + +G EG W
Sbjct: 121 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 180
Query: 173 LSNNI 177
++ I
Sbjct: 181 MAQYI 185
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 114 bits (286), Expect = 2e-33
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
++L +GLD AGKTT+L+ LK + T PT E + NI FT +D+GG + R LW
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+ YF G++F+VD+ D +R EAR EL + N EL+D ++ NK D PNA++ AE
Sbjct: 62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121
Query: 139 ITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLDWLS 174
+ LGL + QR + G E WLS
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 115 bits (288), Expect = 5e-33
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+ R+L++G +GK+TI+ ++++ +V T G + ++F ++DVGGQ
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDE 60
Query: 75 RPLWRHYFQNTQGLIFVV----------DSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
R W F + +IFVV + N +R+ EA + + N LR +++F
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 125 ANKQDLP 131
NKQDL
Sbjct: 121 LNKQDLL 127
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 108 bits (270), Expect = 1e-30
Identities = 38/195 (19%), Positives = 83/195 (42%), Gaps = 34/195 (17%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+++L++G +GK+T + ++++ + +PT G + +++ F + DVGGQ R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVV----------EARDELHRMLNEDELRDAVLLVFA 125
W H F+N ++F+V ++ D+V+ E++ ++ +++ +++F
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 126 NKQDLPNAMNAAEITDK-----------------------LGLHSLRQRHWYIQSTCATS 162
NK+DL + L+ + Y TCAT
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 163 GEGLYEGLDWLSNNI 177
E + + + I
Sbjct: 180 TENIRFVFAAVKDTI 194
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 106 bits (264), Expect = 4e-30
Identities = 49/163 (30%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ +WD+GGQ +
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W Y + ++++VD+ D++++ +++ELH +L++ +L+ +LV NK+DLP A+
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ E+ +K+ L +++ R S + + L WL +
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 101 bits (251), Expect = 4e-28
Identities = 95/166 (57%), Positives = 125/166 (75%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG I
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
RP WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+ AM
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
++E+ + LGL +L+ R W I T AT G GL E ++WL + ++
Sbjct: 123 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.1 bits (233), Expect = 2e-25
Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 10/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
M+IL++G GK+ +L + + + I TIG + + + K + +WD GQ+
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G+I V D D + + +LLV NK D+
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV-GNKSDMET 121
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
+ A+ G ++ + A + + + E L+ I K
Sbjct: 122 RVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 95.0 bits (235), Expect = 2e-25
Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+++L++G +GK+TI+ ++K+ G +K++ F ++DVGGQ R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEAR----------DELHRMLNEDELRDAVLLVFA 125
W H F+ +IF V +D D V+ + N D +++F
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 126 N-KQDLPNAMNAAEITDKLGLH----------------------SLRQRHWYIQSTCATS 162
N K + + +T + + Y TCAT
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 163 GEGLYEGLDWLSNNI 177
+ + D +++ I
Sbjct: 177 TKNVQFVFDAVTDVI 191
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.4 bits (231), Expect = 9e-25
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+ ++IL++G +GK+T L ++++ PT G + E KN+ F + DVGGQ R
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVV----------EARDELHRMLNEDELRDAVLLVFA 125
W F + ++F+V S++ D+V+ E+ + ++N + +++F
Sbjct: 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118
Query: 126 NKQ-DLPNAMNAAEITDK 142
NK L + I D
Sbjct: 119 NKTDLLEEKVQVVSIKDY 136
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.5 bits (229), Expect = 1e-24
Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GKT +L++ T I TIG F + T+E K I +WD GQ+
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G++ V D + R+ + + +++
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
+ E G T A + + L+ +I K
Sbjct: 127 RQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (222), Expect = 1e-23
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 9/166 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNISFTVWDVGGQ 71
++IL++G GK+++L + + +V+ +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R L Y++ QG+I V D RD V+ + L+ + D V ++ NK D
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-- 124
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
E+ GL R+ A + +G+ + L I
Sbjct: 125 --KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.1 bits (222), Expect = 2e-23
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 7/151 (4%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 75
+L VGL +GKT + +L G+ T +I + + N + G +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAV--LLVFANKQDLPN 132
L + + + ++FVVDS R V + + L+++L + LL+ NKQD+
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
A +A I +L R +
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.7 bits (211), Expect = 8e-22
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 9/165 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
++L++G GK+ +L + I TIG + + ++ K + +WD GQ+
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ + G+I V D D++ + L + LLV
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ ++ T A + + ++ I
Sbjct: 127 RVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMARQI 167
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.9 bits (201), Expect = 1e-20
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNISFTVWDVGGQD 72
+ L++G GK+ +L++ + G + V K + +WD GQ+
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + R Y++ G + V D R+ + L ++L K +
Sbjct: 66 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
+ ++ T A +GE + E + I K
Sbjct: 126 REVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKILNK 169
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.5 bits (200), Expect = 3e-20
Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 18/178 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--------------FNVETVEYKNIS 62
+++L +G GKTT LY+ + I T+G N + + +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD GQ++ R L +F++ G + + D + + R+ + ++ + ++
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
+ NK DLP+ E + T A +G+ + + ++ L + I +
Sbjct: 126 LIGNKADLPDQREVNERQ---ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 79.5 bits (195), Expect = 8e-20
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNISFTVWDVGGQD 72
+IL++G + GKT+ L++ + K I +WD GQ+
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G I + D + + +D ++ VLLV
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
+ ++E + A + + + L + I K
Sbjct: 126 RVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 3e-19
Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 10/166 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNISFTVWDVGGQ 71
++++VG GKT +L + K G + T I T+G + V+ + +WD GQ
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R + Y+++ L+ + D ++ + L + + A++L+
Sbjct: 67 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS-- 124
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + G ++ T A +G + ++ +
Sbjct: 125 --AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.1 bits (183), Expect = 5e-18
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNI----SFTVWDVGGQD 72
++++++G A GK++I+ + + PTIG T F +WD GQ+
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ L Y++N Q + V D ++AR + + + +D ++ + NK D+
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQ 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
++ + G ++ T A +GE + + + I K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.7 bits (182), Expect = 2e-17
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
I++ G +GKT++L L + T+ + + +Y T+ D G K+R
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKL 63
Query: 79 RHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQDL 130
Y + + V + D ++ + L +L+ E +L+ NK +L
Sbjct: 64 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123
Query: 131 PNAMNAAEITDKL 143
A ++I D L
Sbjct: 124 FTARPPSKIKDAL 136
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (176), Expect = 5e-17
Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG V+ K I +WD GQ+
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G + V D L + + + + V+++ NK DL +
Sbjct: 65 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + T A + E + I
Sbjct: 124 LRA---VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.1 bits (173), Expect = 1e-16
Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNISFTVWDVGGQD 72
+ +++G GK+ +L++ + + P G + V + I +WD GQ+
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + R Y++ G + V D R + V+++ NK DL
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRST-YNHLSSWLTDARNLTNPNTVIILIGNKADLEA 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ +T + + A +GE + + + I
Sbjct: 124 QRD---VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (171), Expect = 3e-16
Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 9/169 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT ++ + G + F ++TVE + + +WD GQ+
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + + Y+++ LI D + + L + + +LV
Sbjct: 66 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATKA 181
+ + + Y T A + + + L+ + ++A
Sbjct: 126 REV----SQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 170
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (159), Expect = 2e-14
Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ +++G GK+ +L + +T G + ++ K I +WD GQ+
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
R + R Y++ G + V D R+ + + V+++ NK DL +
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRET-FNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
+ + G R+ T A + + E + I K
Sbjct: 123 RRDVKR---EEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (153), Expect = 1e-13
Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 7/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G + + V+ + D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG I V ++ + + +++ +++ NK DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ ++ G + T A S + E + +
Sbjct: 122 SERE---VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (150), Expect = 3e-13
Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 9/166 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G+ + ++ + F +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ L Y++ Q I V D + + A++ + + + + L
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-- 123
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N + + T A + + E ++ +
Sbjct: 124 --ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 3e-12
Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 20/178 (11%)
Query: 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNISFT 64
S LF +++++G GK++++ + + T V+ ++
Sbjct: 4 SSLF-----KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 58
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLI---FVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
+WD GQ++ R L +++ + + V DS + + E + E
Sbjct: 59 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ--STCATSGEGLYEGLDWLSNNI 177
++ NK D+ + E + + T A + + +
Sbjct: 119 VILGNKIDISERQVSTEEAQA-----WCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (141), Expect = 5e-12
Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 9/165 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72
+++++G GKT+++ + + T + K ++ +WD GQ+
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ L Y++++ G I V D D D + ++ + + + +V
Sbjct: 64 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + T A +G+ E L +
Sbjct: 124 RHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.1 bits (139), Expect = 1e-11
Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 9/169 (5%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNISFTVWDV 68
A +E+++ ++G GK++I+++ I + + + F +WD
Sbjct: 1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
G ++ R L Y++ + I V D + ++ + + V +
Sbjct: 61 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
H T A + + E +S I
Sbjct: 121 LTDVREVMERDAKDYA----DSIHAIFVETSAKNAININELFIEISRRI 165
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.4 bits (137), Expect = 2e-11
Identities = 24/165 (14%), Positives = 58/165 (35%), Gaps = 5/165 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQD 72
++++++G GKT+++ + + TIG V+ + ++ +WD GQ+
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + L +++ + V D + L + RD F + +
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N T + + + T A + + ++ N
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 56.5 bits (135), Expect = 4e-11
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 7/166 (4%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKI 74
+++MVG GK+ + + E V + ++ + + + D GQ+
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
+ +YF++ +G + V + + D ++L E + L+ NK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
+ K + Q + T A + + + L I +
Sbjct: 126 QVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.8 bits (133), Expect = 7e-11
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGG 70
+ +I+++G GKT + Y+ G T TIG + ++ + I +WD G
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60
Query: 71 QDKIRPLWR-HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
Q++ R HY++N ++FV D + + D ++ NK D
Sbjct: 61 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120
Query: 130 LPNAMN 135
L +A+
Sbjct: 121 LRSAIQ 126
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.9 bits (128), Expect = 4e-10
Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQD 72
+++++VG A GK++++ + G V +++ +WD GQ+
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + + Y++ Q + V + DR+ +++ E D + NK DL +
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLLD 120
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
I ++ ++ T + E +L+
Sbjct: 121 DSC---IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 5e-10
Identities = 27/164 (16%), Positives = 66/164 (40%), Gaps = 9/164 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+++ +G + GKT+++ + T +E + I +WD GQ++
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
R L Y +++ + V D + + + + + E ++LV NK DL +
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLADK 120
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+++ + G ++ + T A +G + + ++ +
Sbjct: 121 R---QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.5 bits (119), Expect = 7e-09
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 10/169 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-----FNVETVEYKNISFTVWDVGGQ 71
++++++G GKT+++++ + TIG V K + VWD GQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE---ARDELHRMLNEDELRDAVLLVFANKQ 128
++ + L +++ + V D + RDE N + ++ NK
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
D + L T A + + + ++ +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSA 170
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 7e-09
Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 12/164 (7%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYK----NISFTVWDVGGQDK 73
++++VG GKTT + + GE + T+G V + + I F VWD GQ+K
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L Y+ Q ++ + RV + +++ NK D+ +
Sbjct: 65 FGGLRDGYYIQAQ--CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
A+ R+++ A S + WL+ +
Sbjct: 123 KVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 1e-08
Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 8/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG---FNVETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI ++ + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y + +G + V N+ + ++ + D +++ NK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + YI+ T A + +G+ + L I
Sbjct: 122 ARTVESRQAQD---LARSYGIPYIE-TSAKTRQGVEDAFYTLVREI 163
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 1e-08
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 7/167 (4%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG 70
+ ++++VG GK+ + + V+ + + +V+ + D G
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ + Y + G + V NDR E ++L + D +++ NK DL
Sbjct: 64 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ ++ H A + E + L +
Sbjct: 124 ESQR---QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 2e-08
Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 15/178 (8%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVG 69
+ + ++ ++VG A GKT +L + T+ V+ K ++ +WD
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
GQ+ L + T + R + + + + +++ K D
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD 120
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQS----------TCATSGEGLYEGLDWLSNNI 177
L + + E + L + + A + GL D +
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 6e-08
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 6/166 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE---TVEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G + PTI + V+ + + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG V + + +D ++L + D +++ NK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + + + A S + E L I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFL--ESSAKSKINVNEIFYDLVRQI 165
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 1e-07
Identities = 24/172 (13%), Positives = 52/172 (30%), Gaps = 15/172 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY---KNISFTVWDVGGQ 71
+ ++ ++VG A GKT +L + +PT+ N + + ++D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ L + T + +++ + L+ + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120
Query: 132 NAMNAAEITDKLGLHSLRQ----------RHWYIQSTCATSGEGLYEGLDWL 173
+ + E K + + A + +GL D
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 3e-07
Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 15/170 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN---VETVEYKNISFTVWDVGGQDK 73
++++VG A GKT +L + +PT+ N V+ K + +WD G +
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L + +T ++ + D + ++ + + +++ NK+DL N
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 121
Query: 134 MNAAEITDKLGLHSLRQRHWYIQS----------TCATSGEGLYEGLDWL 173
+ K+ ++ + A + +G+ E +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 2e-06
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 6/165 (3%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQD 72
++++VG GK+ + + V TI ++ + V D GQ+
Sbjct: 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + Y + G + V D+ +L + +++ ANK DL
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM- 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
D+ + + YI+++ + + L I
Sbjct: 123 -HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 3e-06
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+I++VG GKT +L+ V T+ ++ + I ++WD G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + ++ ++ D + + + + + E +LLV K DL
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRT 120
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 3e-06
Identities = 21/166 (12%), Positives = 57/166 (34%), Gaps = 8/166 (4%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ R+ + G GK++++ + G + T+ V + + + + D G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML-NEDELRDAVLLVFANKQDLP 131
+ + R I V R + E + ++ + ++ +++ NK
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK--CD 119
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + + + + +++ T A + E L N
Sbjct: 120 ESPSREVQSSEAEALARTWKCAFME-TSAKLNHNVKELFQELLNLE 164
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 4e-06
Identities = 14/162 (8%), Positives = 35/162 (21%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
++L++G GK+ + E G + + V +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
V + R + + + + + E
Sbjct: 63 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
++ G T A + + + I +
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-05
Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 7/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQ 71
K +I ++G + GK+++ + G+ V + I + TV + + D GQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
D+ + Y + G I V + ++L+ +++ NK+DL
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
++ + +++ + A + + +
Sbjct: 123 MERV--ISYEEGKALAESWNAAFLE-SSAKENQTAVDVFRRIILEA 165
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 2e-05
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 7/167 (4%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG 70
+++ R+++VG GK+ + + VT + ++ + + D G
Sbjct: 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAG 62
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ + Y + +G + V DR E ++L + + +++ NK DL
Sbjct: 63 QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + RQ A + + L I
Sbjct: 123 DHQRQVTQEEGQ---QLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 39.6 bits (91), Expect = 6e-05
Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 22/173 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
+ +VG AGK+++L + T P +G + FT+ D+ G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV---EVSEEERFTLADIPGI 59
Query: 72 DKIRPLWRHYFQNT-------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+ + + L++V+D+ D + L LV
Sbjct: 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
NK DL + D L + + A +G GL + L +
Sbjct: 120 LNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPALKEALHALV 167
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 1e-04
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 15/174 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
++ ++VG A GKT +L V T+ TV K ++D GQ+
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L + T + + ++E L E + L+ + DL +
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 128
Query: 134 MNAAEITDKLGLH--------SLRQRHWYIQ--STCATSGEGLYEGLDWLSNNI 177
+ + L + A + +GL D I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 2e-04
Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 8/153 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
E+++ + G GK+ ++ + E T+ + + T++ + +S + D GQ+
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + +G + V D DR E + + + ++ L++ NK DL +
Sbjct: 62 DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165
+ ++ + G + A +GEG
Sbjct: 121 SRQ---VSTEEGEKLATELACAFYECSACTGEG 150
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Score = 37.4 bits (86), Expect = 4e-04
Identities = 30/143 (20%), Positives = 43/143 (30%), Gaps = 13/143 (9%)
Query: 20 ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEY--------KNISFTVW 66
+VGL +GKTT KL G + E V
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 72
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
D + IR + + +VD+ R ++ E L E D VLLV
Sbjct: 73 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 132
Query: 127 KQDLPNAMNAAEITDKLGLHSLR 149
A +K+G+ L
Sbjct: 133 MTGQEALSVARAFDEKVGVTGLV 155
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.5 bits (83), Expect = 6e-04
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 12/162 (7%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
+R+++VG GK+T+L +L + G + + + I F + D G
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF--ANKQDLP 131
+ L + ++ V++A L + R NK D+
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+N EI +KLG ++ A GEGL + + +
Sbjct: 121 EKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESI 156
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.1 bits (79), Expect = 0.002
Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 25/181 (13%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR---- 75
I+ G GK+T++Y+L G+ V G + +E + + + D+ G +
Sbjct: 3 IIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 76 -------------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL----HRMLNEDELRD 118
+ L+ + + D
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 119 AVLLVFANKQDLPNAMNAA--EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+V NK D + + +K + L + A G+ + + +
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEV 180
Query: 177 I 177
I
Sbjct: 181 I 181
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.0 bits (79), Expect = 0.002
Identities = 16/162 (9%), Positives = 50/162 (30%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
E+R+ ++G +GK++++++ G T + + + + +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
+ + +F ++ + + V L + L + + + +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + TCAT G + ++ +
Sbjct: 124 RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 181 | |||
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.98 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.98 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.98 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.98 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.96 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.95 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.93 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.93 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.91 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.91 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.9 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.89 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.88 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.86 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.83 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.83 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.81 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.79 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.78 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.77 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.75 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.75 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.74 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.62 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.59 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.59 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.55 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.49 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.47 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.11 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.08 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.06 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.99 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.96 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.77 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.45 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.39 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.25 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.22 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.2 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.98 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.96 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.96 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.95 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.92 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.85 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.84 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.81 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.8 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.76 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.68 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.67 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.65 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.65 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.6 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.59 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.57 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.57 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.56 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.53 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.51 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.51 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.47 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.42 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.4 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.39 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.38 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.36 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.36 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.35 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.35 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.33 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.31 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.3 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.29 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.27 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.26 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.26 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.26 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.25 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.24 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.24 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.24 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.23 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.23 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.23 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.23 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.21 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.21 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.2 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.2 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.14 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.14 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.13 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.13 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.12 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.12 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.12 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.11 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.1 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.1 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.08 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.06 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.05 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.04 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.03 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.99 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.98 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.96 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.96 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.95 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.92 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.92 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.91 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.87 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.86 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.86 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.84 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.84 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.84 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.78 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.76 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.75 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.72 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.71 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.67 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.67 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.67 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.57 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.55 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.39 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.37 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.3 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.29 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.27 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.22 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.19 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.13 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.09 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.08 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.08 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.06 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.05 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.04 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.03 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.98 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.98 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.9 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.82 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.82 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.7 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.7 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.67 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.62 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.57 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.52 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.41 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.39 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.38 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.35 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.32 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.3 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.29 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.23 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.21 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.17 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.12 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.09 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.04 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 94.91 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.87 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.8 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.79 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.65 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.58 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.54 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.36 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.35 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 94.19 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.13 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.01 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.99 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.84 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.79 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.79 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.79 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.59 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 93.42 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.28 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.19 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 91.75 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.27 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 91.18 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 89.79 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 89.7 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.9 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 88.76 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 88.75 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.23 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 88.15 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 88.02 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.67 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 86.93 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.15 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.82 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.04 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 84.89 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 84.3 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 84.29 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.26 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 83.94 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.17 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 82.93 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=1.5e-38 Score=220.37 Aligned_cols=179 Identities=57% Similarity=1.006 Sum_probs=160.3
Q ss_pred cchHHHHHHhhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 2 GLSFTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
|..+++++++.+. .+.+||+++|++|||||||++++.+..+....||.+........+++.+.+||++|++.++..+..
T Consensus 1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (182)
T d1moza_ 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 80 (182)
T ss_dssp CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence 5678888887744 789999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.++++++|+|++++.++.....+|...+......+.|+++|+||+|+.+....+++...+....+...++++++|||
T Consensus 81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA 160 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 160 (182)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 99999999999999999999999999988888776678999999999999888888899998888888888899999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
++|+|+++++++|.+.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 161 IKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp GGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999988754
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=1.3e-37 Score=214.02 Aligned_cols=171 Identities=72% Similarity=1.254 Sum_probs=156.9
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccccc
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
+.+++.+..+.+||+++|++|||||||++++.++.+....+|.+..........+.+.+||+||++.++..+..+++.++
T Consensus 2 ~~~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (173)
T d1e0sa_ 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 81 (173)
T ss_dssp HHHHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCC
T ss_pred hhhhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccc
Confidence 34556666789999999999999999999999999888888999998889999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++|+|+++.+++....++|...+......+.|+++++||+|+.+.....++...+.+..+.+.++++++|||++|+|+
T Consensus 82 ~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv 161 (173)
T d1e0sa_ 82 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161 (173)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred eEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence 99999999999999999999999888766678999999999999988888889888888888888999999999999999
Q ss_pred HHHHHHHHHHh
Q 030193 167 YEGLDWLSNNI 177 (181)
Q Consensus 167 ~~~~~~i~~~l 177 (181)
+++|++|.+.+
T Consensus 162 ~e~~~~l~~~~ 172 (173)
T d1e0sa_ 162 YEGLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998865
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=2.8e-37 Score=210.75 Aligned_cols=165 Identities=48% Similarity=0.904 Sum_probs=151.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+.+||+++|++|||||||+++|.+..+.+..||.+.....++.+++.+.+||++|++.++..+..+++.++++++|+|++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence 46899999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+..++.....+|...+......++|+++|+||+|+.+....++....+....+...++++++|||++|+|++++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 160 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999888766678999999999999888888888877777767777899999999999999999999999
Q ss_pred Hhhhc
Q 030193 176 NIATK 180 (181)
Q Consensus 176 ~l~~~ 180 (181)
.+.+|
T Consensus 161 ~i~~r 165 (165)
T d1ksha_ 161 DISSR 165 (165)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 98765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=5.2e-37 Score=211.41 Aligned_cols=166 Identities=48% Similarity=0.846 Sum_probs=150.8
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++++.+||+++|++|||||||+++|.++.+....++.+.....+..+++.+.+||++|++.++..+..+++.+|++++|
T Consensus 11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 90 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence 34477899999999999999999999999998778888888888999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
||++++.++.....++..........++|+++|+||+|+.+.....++...+....+....+++++|||++|+|++++|+
T Consensus 91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~ 170 (176)
T d1fzqa_ 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170 (176)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998888776667899999999999998888888887777666677788999999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
+|.+.+
T Consensus 171 ~l~~~i 176 (176)
T d1fzqa_ 171 WVCKNV 176 (176)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 998754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=2.5e-36 Score=205.84 Aligned_cols=161 Identities=30% Similarity=0.680 Sum_probs=149.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
.+||+++|++|||||||+++|.++.+. ...||.+.....++.++..+++||+||++.+...+..++..++++++|||++
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 81 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence 579999999999999999999998876 5678999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++++|.....++..++......++|+++|+||+|+.+.....++...+....+...+++++++||++|.|++++|++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~ 161 (164)
T d1zd9a1 82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161 (164)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence 99999999999999988877778999999999999888888888888887878888899999999999999999999998
Q ss_pred Hh
Q 030193 176 NI 177 (181)
Q Consensus 176 ~l 177 (181)
.+
T Consensus 162 ~~ 163 (164)
T d1zd9a1 162 HS 163 (164)
T ss_dssp TC
T ss_pred cc
Confidence 64
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-35 Score=203.05 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+||+++|++|||||||++++.+..+....++....+. .+.. ..+.+.+||++|+++++..+..+++.+|++++|||+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence 6999999999999999999999887655555544432 2333 447899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
+++.+|..+..|+..+........+|+++|+||+|+.+... .++... + .+..+++|++|||++|.|++++|+.
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-C----AVVFDCKFIETSAALHHNVQALFEG 156 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHH-H----HHhcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999888876654446789999999999876432 222211 1 1223458999999999999999999
Q ss_pred HHHHhhh
Q 030193 173 LSNNIAT 179 (181)
Q Consensus 173 i~~~l~~ 179 (181)
|++.+..
T Consensus 157 l~~~i~~ 163 (168)
T d2gjsa1 157 VVRQIRL 163 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-35 Score=201.18 Aligned_cols=162 Identities=18% Similarity=0.278 Sum_probs=128.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccce-EEEEEEC--CEEEEEEEcCCCCCcccccccccccccEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~-~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
++.+.+||+++|++|||||||+++|.++.+... .+|.... ...+... .+.+.+||++|++++...+..+++++|++
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 81 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence 457789999999999999999999999988754 4443322 2234433 47889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|||++++.+|..+..|+..+.......+.|+++|+||+|+.+... .++... + .+..++++++|||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sak~g~gv 156 (173)
T d2fn4a1 82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-F----GASHHVAYFEASAKLRLNV 156 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSH
T ss_pred eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhH-H----HHhcCCEEEEEeCCCCcCH
Confidence 99999999999999999988876654446899999999999865422 222211 1 1223468999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++|+.|++.+.+
T Consensus 157 ~e~f~~l~~~i~k 169 (173)
T d2fn4a1 157 DEAFEQLVRAVRK 169 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=3.2e-33 Score=189.00 Aligned_cols=160 Identities=93% Similarity=1.424 Sum_probs=145.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|++|||||||+++|.++++....++........+...+.+.+||++|...+...+..++..++++++++|..++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence 58999999999999999999999887666666666777888899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
.++.....++.+.........+|+++++||+|+.+.....++........+...++++++|||++|+|++++|++|.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 99999999999998877777899999999999998888888888777777777889999999999999999999999875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=6.7e-33 Score=190.64 Aligned_cols=176 Identities=47% Similarity=0.893 Sum_probs=153.6
Q ss_pred cchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccc
Q 030193 2 GLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 81 (181)
|.+|+++. +.+..+.+||+++|.+|||||||++++.++++....++.+.....+...+.++.+||+++++.....+..+
T Consensus 1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 79 (177)
T d1zj6a1 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 79 (177)
T ss_dssp CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred ChhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhh
Confidence 56777777 66678889999999999999999999999998877788887778888899999999999999999999999
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+..++.+++|+|.++..++.....++..........+.|+++|+||+|+......+++...+....+...++++++|||+
T Consensus 80 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 159 (177)
T d1zj6a1 80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 159 (177)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred hccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCC
Confidence 99999999999999999998888777777666666789999999999998888888888888877777888999999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030193 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~ 178 (181)
+|+|+++++++|.+++.
T Consensus 160 tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 160 TGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TTBTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998863
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-34 Score=195.68 Aligned_cols=156 Identities=22% Similarity=0.360 Sum_probs=125.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
++||+++|++|||||||+++|+++.+. .+.||.+..+..... ..+.+.+||++|++.+...+..++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 579999999999999999999999876 456788766654433 458999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
||++++++|+.+..|+....+.. .++|+++|+||+|+......++.. ......+++|++|||++|.|++++|+
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999888766532 479999999999997654333221 12234466899999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
+|.+.+.+
T Consensus 156 ~l~~~l~~ 163 (170)
T d1i2ma_ 156 WLARKLIG 163 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 99998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-34 Score=196.78 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=125.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEE-EE--ECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~-~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+.||+++|++|+|||||+++|.++.+.. +.||.+..... .. ...+.+++||++|++.+...+..+++++|++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 5799999999999999999999998874 45665533322 22 34578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------cCCc-ceEEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LRQR-HWYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~S~~~ 162 (181)
|++++++|++...+|...+.... +++|+++|+||+|+.+.....+......... ++.. ..+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999998888777543 6799999999999976432221111111111 1111 24799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|++++|+.+.+++.
T Consensus 161 ~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 161 KDGVREVFEMATRAAL 176 (177)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-34 Score=197.44 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=128.5
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+....+||+++|++|||||||+++|+++.+. ...||.+..... +.. ..+.+++||++|++.+...+..+++.+|+
T Consensus 4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~ 83 (185)
T d2atxa1 4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 83 (185)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence 45677899999999999999999999998876 445666533322 222 44789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------ccCCc-ceEEEE
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQR-HWYIQS 157 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~ 157 (181)
+++|||++++++|++...+|...++... .+.|+++|+||+|+.+.............+ .++.. .++|+|
T Consensus 84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E 162 (185)
T d2atxa1 84 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 162 (185)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred eeeccccchHHHHHHHHHHHHHHHHhcC-CCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999888888776543 689999999999997632211111111000 01111 247899
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|||++|.|++++|+.+++++..
T Consensus 163 ~SAk~~~gv~e~F~~li~~il~ 184 (185)
T d2atxa1 163 CSALTQKGLKTVFDEAIIAILT 184 (185)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred ecCCCCcCHHHHHHHHHHHHcC
Confidence 9999999999999999988753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=5.3e-35 Score=200.00 Aligned_cols=159 Identities=19% Similarity=0.304 Sum_probs=125.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
-+||+++|++|||||||+++++++.+. .+.||.+..+.. +.. ..+.+.+||++|++++...+..+++++|++++|+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 83 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence 469999999999999999999998876 456777655432 333 4478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.+|+....|+..+.+....+++|+++|+||+|+.+.. ..++.... ++..++++++|||++|.|++++|
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gv~e~f 158 (168)
T d1u8za_ 84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCTTHHHHH
T ss_pred eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHH-----HHHcCCeEEEEcCCCCcCHHHHH
Confidence 999999999999888777654444689999999999986532 22332221 22234579999999999999999
Q ss_pred HHHHHHhhhc
Q 030193 171 DWLSNNIATK 180 (181)
Q Consensus 171 ~~i~~~l~~~ 180 (181)
++|++.+.+|
T Consensus 159 ~~l~~~i~~r 168 (168)
T d1u8za_ 159 FDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCc
Confidence 9999998775
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.2e-34 Score=196.26 Aligned_cols=159 Identities=19% Similarity=0.374 Sum_probs=126.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|||||||+++|.++.+. ...++.+.... .+... .+.+++||+||++++...++.+++++|++|+
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4589999999999999999999998876 44555554433 33333 3789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||+++++++.....++..... ......|+++|+||+|+..... .++... + ++..+++|++|||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~g~gv~e 157 (169)
T d3raba_ 84 MYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQ-L----ADHLGFEFFEASAKDNINVKQ 157 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHH
T ss_pred EEECccchhhhhhhhhhhhhhc-ccCCcceEEEEEeecccccccccchhhhHH-H----HHHcCCEEEEecCCCCcCHHH
Confidence 9999999999999888866543 2336799999999999876432 222222 1 123356899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030193 169 GLDWLSNNIATK 180 (181)
Q Consensus 169 ~~~~i~~~l~~~ 180 (181)
+|++|++.+.+|
T Consensus 158 ~f~~l~~~i~ek 169 (169)
T d3raba_ 158 TFERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-34 Score=196.11 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=128.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEE-E--EECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.+||+++|++|||||||+++|..+.+.. +.||.+..+.. + +...+.+.+||++|++.+...++.+++++|++++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 57899999999999999999999999874 45666544432 2 23458899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||++++.+|+++..|+....+....+++|+++|+||+|+..... .++...... +..++++++|||++|.|++++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHHH
Confidence 99999999999999998876654446899999999999976432 222222111 112468999999999999999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
|++|++.+.
T Consensus 158 F~~l~~~i~ 166 (167)
T d1c1ya_ 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-34 Score=196.70 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=128.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.+||+++|++|||||||+++|+++.+.. +.||.+..+. .+.. ..+.+.+||++|.+.+...+..+++.+|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 346799999999999999999999988764 5677776643 2344 34788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++++|..+..|+..+.......++|+++|+||+|+.... ..++... + .+..+++|++|||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~-~----a~~~~~~~~e~Sak~~~~v~~ 156 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA-L----AESWNAAFLESSAKENQTAVD 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECCTTCHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHH-H----HHHcCCEEEEEecCCCCCHHH
Confidence 99999999999999998887665444679999999999986532 2333221 1 123345799999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+|+.|++.+.
T Consensus 157 ~f~~li~~~~ 166 (167)
T d1xtqa1 157 VFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-33 Score=191.83 Aligned_cols=155 Identities=18% Similarity=0.361 Sum_probs=125.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEE--E--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||+++|.++++. .+.|+.+....... . ..+.+.+||++|++.+...+..+++.++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 58999999999999999999998876 44666655544322 2 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.+|..+..||....... ..++|+++|+||+|+.+.. ..++... .++..++++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHH-----HHHHcCCEEEEecCCCCcCHHHHH
Confidence 9999999999999998866533 2579999999999986532 2222222 112234579999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
++|+++|.
T Consensus 155 ~~i~~~l~ 162 (164)
T d1yzqa1 155 RRVAAALP 162 (164)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhC
Confidence 99999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-34 Score=194.66 Aligned_cols=158 Identities=19% Similarity=0.339 Sum_probs=125.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|||||||+++|.++.+. ...++.+..+ ..+... .+++++||+||++.|...++.++++++++++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~ 83 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 83 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence 4689999999999999999999998876 3455554433 344443 4788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|++++.++....+++..+.... ...+|+++|+||+|+.+.. ..++... + .+..++++++|||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ilvgnK~D~~~~~~v~~~~~~~-~----~~~~~~~~~~~SAktg~gV~e 157 (171)
T d2ew1a1 84 TYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEE-F----SEAQDMYYLETSAKESDNVEK 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCCEEECCTTTCTTHHH
T ss_pred eeecccchhhhhhhhhhhhhcccc-cccccEEEEEeecccccccchhhhHHHH-H----HHhCCCEEEEEccCCCCCHHH
Confidence 999999999999999888765532 2578999999999986543 2222221 1 122345789999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|..|++.+.+
T Consensus 158 ~f~~l~~~l~~ 168 (171)
T d2ew1a1 158 LFLDLACRLIS 168 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-34 Score=195.01 Aligned_cols=160 Identities=16% Similarity=0.248 Sum_probs=125.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.+||+++|++|||||||+++|+++.+. .+.||.+..+.. ... ..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 3689999999999999999999998876 456777755433 223 336889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
||++++++|..+..|+...... ....++|+++|+||+|+.+.. ..++... + .+..++++++|||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~-~----~~~~~~~~~e~Sak~~~~v~e 155 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-L----ARTWKCAFMETSAKLNHNVKE 155 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHH
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHH-H----HHHcCCeEEEEcCCCCcCHHH
Confidence 9999999999999888766542 223578999999999986532 2222221 1 122345899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030193 169 GLDWLSNNIATK 180 (181)
Q Consensus 169 ~~~~i~~~l~~~ 180 (181)
+|+.|.+.+.++
T Consensus 156 ~f~~l~~~~~~~ 167 (171)
T d2erxa1 156 LFQELLNLEKRR 167 (171)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHHHh
Confidence 999999987765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.2e-34 Score=194.84 Aligned_cols=159 Identities=17% Similarity=0.212 Sum_probs=127.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++.++.+. ...||.+..+.. +.. ..+.+++||++|++.+...+..+++++|++++||
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~ 83 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY 83 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence 489999999999999999999998876 445665543322 233 4478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCC-CHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~ 169 (181)
|++++.+|.++..|+..+.+.....++|+++++||+|+.... ..++... + ++..+++|++|||+++. ||+++
T Consensus 84 d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~-~----~~~~~~~~~e~Sak~~~~nV~~~ 158 (169)
T d1x1ra1 84 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-M----ATKYNIPYIETSAKDPPLNVDKT 158 (169)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-H----HHHHTCCEEEEBCSSSCBSHHHH
T ss_pred ccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH-H----HHHcCCEEEEEcCCCCCcCHHHH
Confidence 999999999999998887665444679999999999987653 2233221 1 12234579999999875 99999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|..|++.+.++
T Consensus 159 F~~l~~~i~~~ 169 (169)
T d1x1ra1 159 FHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999988764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-33 Score=191.99 Aligned_cols=157 Identities=20% Similarity=0.327 Sum_probs=119.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEE--EE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|||||||+++|.++.+.. ..||.+...... .. ..+.+++||++|++++...+..+++++|++++|
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 82 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV 82 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence 5799999999999999999999988774 566666554432 22 348999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||++++++|+.+..|+....... ....|+++|+||+|+.+.. ..++... .++..++++++|||++|.|++++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~-----~a~~~~~~~~e~Sak~~~~v~e~ 156 (167)
T d1z08a1 83 YDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAES-----YAESVGAKHYHTSAKQNKGIEEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHH-----HHHHcCCeEEEEecCCCcCHHHH
Confidence 99999999999998887654322 2578999999999987543 2333322 12233568999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|++|++.+.+
T Consensus 157 F~~l~~~i~~ 166 (167)
T d1z08a1 157 FLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-34 Score=194.90 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=124.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
++++||+++|++|||||||++++.++.+. ...||.+... ..+.. ..+.+++||++|.+.+...+..+++.+|++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 45689999999999999999999998876 4456655333 22333 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|++++.+|..+..|+............|+++|+||+|+.+.. ..++... + ++..+++|++|||++|.|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~~~~i~e 157 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ-L----ARQLKVTYMEASAKIRMNVDQ 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHH-H----HHHTTCEEEECBTTTTBSHHH
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHH-H----HHHcCCEEEEEcCCCCcCHHH
Confidence 99999999999999988877665444679999999999986542 2222222 1 223456899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|..|++.+.+
T Consensus 158 ~f~~l~~~i~k 168 (171)
T d2erya1 158 AFHELVRVIRK 168 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.3e-33 Score=190.84 Aligned_cols=158 Identities=21% Similarity=0.345 Sum_probs=126.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEE--EEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--EYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~--~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.+||+++|++|||||||+++|.++.+. .+.+|.+...... ... ...+.+||++|++++...+..+++.+++++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 46789999999999999999999999887 4456666554332 222 357889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||++++++|..+..|+...... ...+.|+++|+||+|+.+.. ..++... + ++..+++|++|||++|.|++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SAk~~~nV~ 155 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKD-Y----ADSIHAIFVETSAKNAININ 155 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHH
T ss_pred EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHH-H----HHHcCCEEEEEecCCCCCHH
Confidence 999999999999998888665443 33689999999999996542 2222222 1 22345689999999999999
Q ss_pred HHHHHHHHHhh
Q 030193 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~l~ 178 (181)
++|..|++.+.
T Consensus 156 e~f~~l~~~i~ 166 (167)
T d1z0ja1 156 ELFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 99999999874
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-33 Score=192.84 Aligned_cols=162 Identities=20% Similarity=0.401 Sum_probs=127.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||+++|.++.+.. +.||.+..+. .+... .+.+.+||++|++++...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 5899999999999999999999998774 5667665443 44444 37899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
||++++.+|.....|+....... ....|+++++||+|+.+......+........++..+++|++|||++|.|++++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 99999999999998887655433 25789999999999865432222211111222334567899999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
.|.+.|.-
T Consensus 162 ~i~~~i~~ 169 (170)
T d1ek0a_ 162 GIGEKIPL 169 (170)
T ss_dssp HHHTTSCC
T ss_pred HHHHHhcc
Confidence 99987754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.6e-34 Score=193.46 Aligned_cols=155 Identities=19% Similarity=0.350 Sum_probs=124.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|||||||+++|.++.+. ...||.+..... .... .+.+.+||++|++++...+..+++.++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 479999999999999999999988876 456777655443 3333 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||++++.+|+.+..|+..+.... +++|+++|+||+|+.+.. ..++... + ++..++++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEG-L----AKRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHH-H----HHHcCCEEEEeccCCCcCHHHH
Confidence 99999999999988877765432 479999999999986543 2222221 1 1233568999999999999999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
|+.|++.+.
T Consensus 155 f~~l~~~~l 163 (164)
T d1z2aa1 155 FKYLAEKHL 163 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-32 Score=191.64 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=125.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.+||+++|++|||||||+++|.++.+. .+.||.+..... ... ..+.+++||++|+++|...+..+++.+|++++|
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 4689999999999999999999999976 456776644322 222 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CccCC-cceEEEEcccC
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQ-RHWYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~S~~ 161 (181)
||++++++|+++.+||...+.... .+.|+++|+||+|+.+.....+....... ..++. .+.+|++|||+
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred cccchHHHHHHHHHHHHHHHhhcC-CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence 999999999999988888776533 57999999999998643211111000000 00111 23478999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|++++|+.+...+.+
T Consensus 161 ~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAALE 178 (191)
T ss_dssp TCTTHHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999987654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-33 Score=190.64 Aligned_cols=156 Identities=21% Similarity=0.361 Sum_probs=123.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|+|||||++++.++.+.. ..++..... ..+... .+.+++||++|++++...+..+++.+|++++
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il 82 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 82 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence 35899999999999999999999988764 344444333 333333 4689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|+++.++|.....|+..... ......|+++++||+|+..... .++... + ++..++++++|||++|.|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Saktg~~v~e 156 (166)
T d1z0fa1 83 VYDITRRSTYNHLSSWLTDARN-LTNPNTVIILIGNKADLEAQRDVTYEEAKQ-F----AEENGLLFLEASAKTGENVED 156 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHH
T ss_pred EeccCchHHHHHHHHHHHHHHh-hccccceEEEEcccccchhhcccHHHHHHH-H----HHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999988876644 3336799999999999854332 222222 1 123346899999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+|+.|.+.+
T Consensus 157 ~f~~i~~~i 165 (166)
T d1z0fa1 157 AFLEAAKKI 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.5e-34 Score=193.49 Aligned_cols=158 Identities=17% Similarity=0.269 Sum_probs=125.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.+||+++|++|||||||+++|+++.+.. ..|+.+.... .+.. ..+.+++||++|++.+...+..++++++++++|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence 57899999999999999999999998774 4555553322 2223 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||++++.+|.+...|+..........++|+++|+||+|+.+... .++... + ++..++++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sak~g~~i~e~ 156 (167)
T d1kaoa_ 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-L----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSCEEEECTTCHHHHHHH
T ss_pred eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHH-H----HHHcCCeEEEECCCCCcCHHHH
Confidence 99999999999999998876654456899999999999865422 222111 1 1123457899999999999999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
|+.|++.|.
T Consensus 157 f~~i~~~i~ 165 (167)
T d1kaoa_ 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998763
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-33 Score=190.45 Aligned_cols=158 Identities=20% Similarity=0.352 Sum_probs=127.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEE--EEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--EYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~--~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
-.+||+++|++|||||||+++|.++.+. ...+|.+...... ... .+.+.+||++|++.+...+..++++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 4679999999999999999999998876 4466666655432 232 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|+++++++.....|+..+... ..+++|+++|+||+|+.++. ..++... + .+..+++|++|||++|.|+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~-~----~~~~~~~~~e~SAk~g~~V~e 158 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQS-Y----ADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHH
T ss_pred EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHH-H----HHhcCCEEEEeeCCCCCCHHH
Confidence 99999999999999888876543 33689999999999986543 2222221 1 122356899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|+.|++.|.+
T Consensus 159 ~f~~l~~~i~~ 169 (170)
T d1r2qa_ 159 IFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHHHhh
Confidence 99999988764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-32 Score=189.03 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=126.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.+||+++|++|||||||+++|+++.+. .+.||.+.... .+.. ..+.+.+||++|++.+...+..+++.+|++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence 45799999999999999999999999876 45666654332 2333 44788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------cCC-cceEEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LRQ-RHWYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~S~ 160 (181)
|||++++++|+++..+|...++... .++|+++|+||+|+.+.....+......... +++ ..++|+||||
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeccchHHHHHHHHHHHHHHHHHhC-CCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 9999999999999888887766533 5799999999999865422211111111110 111 2268999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++|+.+++.+..
T Consensus 162 k~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHHHHcC
Confidence 9999999999999987654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-33 Score=191.13 Aligned_cols=160 Identities=20% Similarity=0.356 Sum_probs=126.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|||||||+++|.++.+. ...|+....... +.. ....+++||+||++++...+..+++.+++++
T Consensus 3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (174)
T d2bmea1 3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 82 (174)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence 34689999999999999999999998876 345555554433 222 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|+|+++++++..+..++....... ..++|+++|+||+|+....... +....+ .++.++++++|||++|.|+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sak~~~gi~e 157 (174)
T d2bmea1 83 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEE 157 (174)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHH----HHhCCCEEEEeeCCCCcCHHH
Confidence 9999999999999998888865533 3689999999999986533221 111111 123456899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|+++.+++.+
T Consensus 158 ~f~~l~~~i~~ 168 (174)
T d2bmea1 158 AFVQCARKILN 168 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=5.2e-33 Score=190.04 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=121.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEE-EE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~-~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|||||||+++++++.+. .+.||.+..+... .. ..+.+++||++|++.+. .+..++++++++++||
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 589999999999999999999999876 5577877665332 22 34789999999998875 4566889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCC-CHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~ 169 (181)
|++++.+|..+..|+..........+.|+++|+||+|+.+.. ..++... + ++..+++|++|||++|. ||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~-~----a~~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-L----ATELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSEEEECCTTTCTTCHHHH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH-H----HHHhCCeEEEEccccCCcCHHHH
Confidence 999999999998865544333333579999999999986532 2232222 1 12234589999999998 59999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|..|++.+.++
T Consensus 156 F~~l~~~i~~~ 166 (168)
T d2atva1 156 FYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.8e-33 Score=195.27 Aligned_cols=160 Identities=21% Similarity=0.431 Sum_probs=125.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE------------CCEEEEEEEcCCCCCccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY------------KNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~------------~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
..+||+++|++|||||||+++|+++.+.. ..++....+ ..+.. ..+++++||++|++.|+..+..
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence 45899999999999999999999988763 344433332 22221 2368999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++|+|||++++.+++.+..|+...........+|+++|+||+|+.+... .++... + +++.++++++|
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~-~----~~~~~~~~~e~ 158 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE-L----ADKYGIPYFET 158 (186)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCCEEEE
T ss_pred HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHH-H----HHHcCCEEEEE
Confidence 9999999999999999999999998887766655556789999999999975432 222211 1 22334578999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhc
Q 030193 159 CATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
||++|.|++++|+++.+.+.++
T Consensus 159 Sak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 159 SAATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.6e-32 Score=186.94 Aligned_cols=158 Identities=18% Similarity=0.330 Sum_probs=123.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccc--eEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|||||||++++.++.+.. ..++.+. ....+...+ +.+.+||++|+++|...+..+++.++++++
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence 46899999999999999999999988763 3444433 333444444 789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|||.+++.+|....+++..+.... ..++|+++|+||+|+.+..... +..... .+..+.++++|||++|.|++++
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~i~e~ 157 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNLSFIETSALDSTNVEEA 157 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHh----hcccCceEEEEecCCCcCHHHH
Confidence 999999999999999887765533 3679999999999997643222 221211 1123458999999999999999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
|+.+.+.+.
T Consensus 158 f~~l~~~i~ 166 (175)
T d2f9la1 158 FKNILTEIY 166 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.6e-32 Score=187.82 Aligned_cols=159 Identities=19% Similarity=0.402 Sum_probs=118.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cc-cCcccceEEE--EEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT-IPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~-~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+..+||+++|+++||||||+++++++.+. .. .++.+..... +...+ +.+++|||+|++++...+..+++++|++
T Consensus 4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~ 83 (170)
T d2g6ba1 4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 83 (170)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence 45789999999999999999999998865 32 3445555443 33443 6889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|||+++++++.....++........ ...|+++|+||+|+.+... .++... + ++..++++++|||++|.|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~g~gi 157 (170)
T d2g6ba1 84 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEK-L----AKEYGLPFMETSAKTGLNV 157 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHH-H----HHHHTCCEEECCTTTCTTH
T ss_pred EEEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHH-H----HHHcCCEEEEEeCCCCcCH
Confidence 999999999999999998887655433 5789999999999876532 222222 1 1233567999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++|++|++.|.+
T Consensus 158 ~e~f~~l~~~i~k 170 (170)
T d2g6ba1 158 DLAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=6.5e-33 Score=190.37 Aligned_cols=159 Identities=21% Similarity=0.359 Sum_probs=121.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+|+|++|||||||++++.++++.. +.++..... ..... ....+.+||++|++.+...+..+++.+|++++|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 4799999999999999999999988763 344333322 22223 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+|++++.+|.....||...... ...++|+++|+||+|+..... ..+....+ ++..+++|++|||++|.|++++|
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~----a~~~~~~~~e~Sa~tg~~V~e~f 157 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAF----AREHGLIFMETSAKTACNVEEAF 157 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHHTCEEEEECTTTCTTHHHHH
T ss_pred EeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHH----HHHcCCEEEEecCCCCCCHHHHH
Confidence 9999999999999998776553 336799999999999765321 11111111 12234589999999999999999
Q ss_pred HHHHHHhhhc
Q 030193 171 DWLSNNIATK 180 (181)
Q Consensus 171 ~~i~~~l~~~ 180 (181)
..+.+.+.++
T Consensus 158 ~~i~~~i~~~ 167 (173)
T d2a5ja1 158 INTAKEIYRK 167 (173)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.7e-32 Score=186.07 Aligned_cols=160 Identities=19% Similarity=0.286 Sum_probs=127.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEE-E--EECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
..+||+++|++|||||||+++|+++.+.. ..++.+..... + ....+.+.+||++|++.+...+..+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 35899999999999999999999998775 45565544322 2 22347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+|++++.+|+....|+..+.......++|+++|+||+|+.......+....+ .+..++++++|||++|.|++++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDL----ARSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHH----HHHHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHH----HHHhCCeEEEEcCCCCcCHHHHHH
Confidence 9999999999998888776654444679999999999997654322222222 122345799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
.|++.+.+
T Consensus 158 ~i~~~i~~ 165 (166)
T d1ctqa_ 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=7e-32 Score=186.15 Aligned_cols=156 Identities=16% Similarity=0.244 Sum_probs=124.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEE--ECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|||||||++++.++.+.. +.||.+.... .+. ...+.+++||++|++.+...+..+++.+|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 5799999999999999999999999874 4666543332 222 24578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhH---HHhhhCCCccCCcceEE
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAE---ITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~ 155 (181)
|++++++|+....+|...+.... .++|+++|+||+|+.+.. ..++ +.+..+ ..+|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-------~~~y 153 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATY 153 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEE
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC-------CCeE
Confidence 99999999999998888765433 589999999999986421 1111 111111 2479
Q ss_pred EEcccCCCCC-HHHHHHHHHHHhhhc
Q 030193 156 QSTCATSGEG-LYEGLDWLSNNIATK 180 (181)
Q Consensus 156 ~~~S~~~~~~-i~~~~~~i~~~l~~~ 180 (181)
+||||++|.| ++++|+.+.+.+.+|
T Consensus 154 ~E~SAk~~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 154 IECSALQSENSVRDIFHVATLACVNK 179 (179)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999985 999999999988765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=4.6e-32 Score=184.89 Aligned_cols=159 Identities=23% Similarity=0.412 Sum_probs=124.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
-+||+++|++|+|||||+++|+++.+. ...||.+..+. .+... .+.+.+||+||++.+...+..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 479999999999999999999998876 44566655443 34433 47888999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
||+++++++.....++....... ....|++++++|.|+.+.....+....+ +...++++++|||++|+|++++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEAL----AKELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHH----HHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHH----HHhcCCeEEEECCCCCCCHHHHHH
Confidence 99999999998887776655533 3578999999999987765444433333 123456899999999999999999
Q ss_pred HHHHHhhhc
Q 030193 172 WLSNNIATK 180 (181)
Q Consensus 172 ~i~~~l~~~ 180 (181)
+|.+.+.+|
T Consensus 157 ~l~~~i~~k 165 (166)
T d1g16a_ 157 TLAKLIQEK 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998775
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=4.2e-32 Score=189.53 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=126.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+|+|++|||||||+++|+++.+. ...||.+.... .+.. ..+.+++||++|++++...+..++++++++|
T Consensus 4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i 83 (194)
T d2bcgy1 4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 83 (194)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 44689999999999999999999998876 44566655443 3433 4578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||+++++++.....++..+... ....+|+++|+||+|+.+... .++..... ...++++++|||++|.|++
T Consensus 84 ~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~ 157 (194)
T d2bcgy1 84 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 157 (194)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHH
Confidence 999999999999998887776443 336799999999999976432 22222211 1223468999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+.+++.+.+
T Consensus 158 e~f~~l~~~i~~ 169 (194)
T d2bcgy1 158 DAFLTMARQIKE 169 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.4e-32 Score=187.50 Aligned_cols=160 Identities=21% Similarity=0.378 Sum_probs=99.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|||||||+++|.++.+. ...+|.+.. ...+...+ +.+++||+||++.+...+..+++.+|++|
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i 83 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 83 (173)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence 45689999999999999999999998875 344555443 34455444 78889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||++++.++..+..++..... ....+.|+++|+||+|+...... ++.... +...++++++|||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~g~gv~ 157 (173)
T d2fu5c1 84 LVYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVE 157 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHH
T ss_pred EEEECCChhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHH-----HHhcCCEEEEEeCCCCCCHH
Confidence 99999999999999888776643 33467999999999998764322 222211 12335689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
++|++|++.+.+|
T Consensus 158 e~f~~l~~~i~~k 170 (173)
T d2fu5c1 158 NAFFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.97 E-value=3.9e-30 Score=174.95 Aligned_cols=165 Identities=58% Similarity=1.021 Sum_probs=149.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+.+||+++|++|||||||++++.++++....++.+........+++.+.+||.+|.+.+...+...+...+.+++++|+.
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 83 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence 46899999999999999999999999988888888888888889999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+..++.....++............|+++++||.|+.+.....++...+....+...+++|++|||++|.|++++|++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~ 163 (169)
T d1upta_ 84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 163 (169)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 98888888888777777666678999999999999988888888888777777778899999999999999999999999
Q ss_pred Hhhhc
Q 030193 176 NIATK 180 (181)
Q Consensus 176 ~l~~~ 180 (181)
.+.+|
T Consensus 164 ~l~~k 168 (169)
T d1upta_ 164 TLKSR 168 (169)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 98765
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.6e-31 Score=181.68 Aligned_cols=158 Identities=25% Similarity=0.405 Sum_probs=126.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccce--EEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~--~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||+++|.++.+... .++.+.. ...+... .+.+.+||+||++++...+..+++.+|++++|
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 86 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 86 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 58999999999999999999999887643 4444333 2334443 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
||++++.++.....++..+.........|+++++||.|...... .++... ..+..+++|++|||++|.|++++|
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~tg~gv~e~f 161 (177)
T d1x3sa1 87 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-----FARKHSMLFIEASAKTCDGVQCAF 161 (177)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHH-----HHHHCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999998876655556799999999999865432 222222 122345689999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+++++.+.+
T Consensus 162 ~~l~~~l~~ 170 (177)
T d1x3sa1 162 EELVEKIIQ 170 (177)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 999998765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=5e-31 Score=182.56 Aligned_cols=159 Identities=17% Similarity=0.278 Sum_probs=125.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||+++|+++.+. .+.||.+........ ..+.+.+||++|+..+...+..++..++++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 79999999999999999999998876 456677766554433 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhc---CCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~---~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|.+++.++..+..|+..+.. .....++|+++|+||+|+.+.....+....+.. ...++++++|||++|.|++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH---HhcCCeEEEEcCCCCcCHHHH
Confidence 99999999998887765533 333356899999999998765433332222211 123457999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+++++.+.+
T Consensus 160 f~~l~~~i~~ 169 (184)
T d1vg8a_ 160 FQTIARNALK 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.3e-31 Score=180.95 Aligned_cols=156 Identities=17% Similarity=0.287 Sum_probs=110.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEE-----CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
-+||+++|++|||||||+++|+++++.. ..|+.+........ ....+.+||++|++++...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 4799999999999999999999988764 44554433332221 23678999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhc---CCCCCCCeEEEEEeCCCCCCCC---CHhH---HHhhhCCCccCCcceEEEEcccC
Q 030193 91 VVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNAM---NAAE---ITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piivv~nK~D~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
|||++++.+|.....|+..+.. .....++|+++|+||+|+.+.. ..++ +.+.++ ..+|++|||+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SA~ 154 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG-------DIPLFLTSAK 154 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT-------SCCEEEEBTT
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcC-------CCeEEEEeCC
Confidence 9999999999998887766543 2333578999999999987532 2222 222221 2468999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|++++|++|.+.+.+
T Consensus 155 ~g~gv~e~f~~l~~~~l~ 172 (175)
T d1ky3a_ 155 NAINVDTAFEEIARSALQ 172 (175)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999987654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.7e-30 Score=177.32 Aligned_cols=160 Identities=14% Similarity=0.299 Sum_probs=121.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.-+||+++|++|||||||+++|.++.+.. +.+|.+.... .+... .+.+.+||++|+..+...+..++..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 45799999999999999999999988764 4455554432 22333 4788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHh---cCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 91 VVDSNDRDRVVEARDELHRML---NEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|.+++.++.....|+..+. ......++|+++|+||+|+.+.. ..++...... +..+++|++|||++|.|+
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNV 160 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTH
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCcCH
Confidence 999999999998888765443 33344578999999999997633 3333322111 012357899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++|+.+++.+.+
T Consensus 161 ~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 161 AAAFEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.9e-31 Score=181.91 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=118.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceE--EEEEE--CCEEEEEEEcCCCCCc-ccccccccccccEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKI-RPLWRHYFQNTQGLI 89 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~-~~~~~~~~~~~d~~i 89 (181)
-+||+++|++|+|||||+++|.+..+. ...++++... ..+.. ..+.+.+||+++.... +..+..+++.+|++|
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i 82 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 82 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence 479999999999999999999987653 3445555433 23333 3467889998764322 224667889999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||++++.++.++..|+.........+++|+++|+||+|+.+.. ..++.. .+ ....++++++|||++|.|++
T Consensus 83 lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~Sak~g~~i~ 157 (172)
T d2g3ya1 83 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-AC----AVVFDCKFIETSAAVQHNVK 157 (172)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHH
T ss_pred eeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHH-HH----HHHcCCeEEEEeCCCCcCHH
Confidence 999999999999999998887766555689999999999986542 222221 11 12234689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
++|+.|++.+..+
T Consensus 158 ~~f~~l~~~i~~r 170 (172)
T d2g3ya1 158 ELFEGIVRQVRLR 170 (172)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.4e-29 Score=170.20 Aligned_cols=157 Identities=39% Similarity=0.640 Sum_probs=139.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++|||||||+|++.++.+....||.+.........+....+||++|...+...+..++..++++++++|.++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence 79999999999999999999999988889999888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-------CCcceEEEEcccCCCCCHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++.....++..........+.|++++++|.|+.......++...+..... ....+++++|||++|+|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~ 161 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence 99998888888877766678999999999999887777777776654433 23467899999999999999999
Q ss_pred HHHH
Q 030193 172 WLSN 175 (181)
Q Consensus 172 ~i~~ 175 (181)
||.+
T Consensus 162 ~l~~ 165 (166)
T d2qtvb1 162 WLSQ 165 (166)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.1e-30 Score=176.52 Aligned_cols=154 Identities=13% Similarity=0.178 Sum_probs=116.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.+||+++|++|||||||+++++++.+....++....+.. +.. ..+.+++||++|+.++. +++.+|++|+|||
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd 79 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFS 79 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEEee
Confidence 589999999999999999999999987666665544432 344 34789999999987654 6788999999999
Q ss_pred CCCcccHHHHHHHHHHHh--cCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 94 SNDRDRVVEARDELHRML--NEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~--~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
++++++|+.+..|+..+. ......++|+++|+||.|+.... ..++...... +..+++|++|||++|.|++
T Consensus 80 ~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~~v~ 155 (175)
T d2bmja1 80 LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKRCSYYETCATYGLNVD 155 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTTEEEEEEBTTTTBTHH
T ss_pred cccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH----HhCCCeEEEeCCCCCcCHH
Confidence 999999999888766543 33333578999999999975422 1222222111 1235689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|..+++.+.+
T Consensus 156 ~~F~~l~~~i~~ 167 (175)
T d2bmja1 156 RVFQEVAQKVVT 167 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.4e-30 Score=177.21 Aligned_cols=153 Identities=22% Similarity=0.356 Sum_probs=117.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEE--ECCEEEEEEEcCCCCCccc-ccccccccccEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~-~~~~~~~~~d~~i 89 (181)
+.+||+++|++|||||||+++|.++.+.. ..++.+.... ... .....+.+||++|...+.. .++.+++++|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 35799999999999999999999988764 4444443332 222 3457899999999877654 4678899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCC---CC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATS---GE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~ 164 (181)
+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.. ..++... + .++.++++++|||++ +.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SAkt~~~~~ 155 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-F----ADTHSMPLFETSAKNPNDND 155 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCCEEECCSSSGGGGS
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH-H----HHHCCCEEEEEecccCCcCc
Confidence 999999999999998888887665555689999999999986542 2333222 1 123345789999987 56
Q ss_pred CHHHHHHHH
Q 030193 165 GLYEGLDWL 173 (181)
Q Consensus 165 ~i~~~~~~i 173 (181)
||+++|.+|
T Consensus 156 ~V~e~F~~l 164 (165)
T d1z06a1 156 HVEAIFMTL 164 (165)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 999999876
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.96 E-value=3e-28 Score=167.91 Aligned_cols=163 Identities=29% Similarity=0.614 Sum_probs=132.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+..||+++|++|||||||+++|.+..+....|+.......+...+..+.+||+.++..+...+..+....+++++++|+
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 90 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC 90 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeec
Confidence 67899999999999999999999999988778888888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------ccCCcceEEEEcccCC
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATS 162 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~S~~~ 162 (181)
++...+......+..........+.|+++++||.|+.......++...+... .+...++++++|||++
T Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~t 170 (186)
T d1f6ba_ 91 ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 170 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTT
T ss_pred cCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCC
Confidence 9999998888877777776666789999999999998777766666555422 1233467899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
|+|++|+|+||.+++
T Consensus 171 g~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 171 RQGYGEGFRWMAQYI 185 (186)
T ss_dssp TBSHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999999875
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=7.1e-28 Score=168.07 Aligned_cols=163 Identities=25% Similarity=0.446 Sum_probs=131.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+.+||+++|+.|||||||+++|..+.+ .+.||.+..+..+......+++||++|++.++..|..+++.++++++|+|.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence 368999999999999999999988887 4679999999999999999999999999999999999999999999999997
Q ss_pred Ccc----------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------------------CCHhH----HH-hh
Q 030193 96 DRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------MNAAE----IT-DK 142 (181)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------------~~~~~----~~-~~ 142 (181)
+.. .+....+.|...+......+.|+++++||.|+... ..... +. ..
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence 653 34556677888887766678999999999997421 01111 11 11
Q ss_pred hCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..........+.+++|||++|.|++++|+.+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~ 196 (200)
T d2bcjq2 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 196 (200)
T ss_dssp HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence 1222233456788999999999999999999888764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=3e-27 Score=164.28 Aligned_cols=161 Identities=26% Similarity=0.441 Sum_probs=126.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+.+||+++|+.|||||||+++|...++ ||.+.....++.....+++||++|++.++..|..+++.++++++|+|.+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence 368999999999999999999976554 5667777888999999999999999999999999999999999999998
Q ss_pred CcccH----------HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----------------CCHhHHH----hhh-
Q 030193 96 DRDRV----------VEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEIT----DKL- 143 (181)
Q Consensus 96 ~~~s~----------~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----------------~~~~~~~----~~~- 143 (181)
+..++ .....+|...+......+.|+++++||+|+... ....+.. ..+
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE 156 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence 76544 345567778777777778999999999986321 1111111 111
Q ss_pred C-CCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 144 G-LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 144 ~-~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
. ........+++++|||+++.|++++|+.+.+.+.++
T Consensus 157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 1 111223567888999999999999999999887653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.2e-26 Score=159.56 Aligned_cols=153 Identities=17% Similarity=0.074 Sum_probs=108.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------cccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~~~ 85 (181)
-.|+++|.+|||||||+|+|++.... +..+ |...........+..+.+|||||....... ...++.++
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a 85 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 85 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence 36999999999999999999988643 2222 444555567778899999999997543322 33456789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
|++++|+|+.++.. ....++.+.++... .+.|+++|+||+|+.+.. ++....+... + ....++++||++|.|
T Consensus 86 d~il~v~D~~~~~~--~~~~~i~~~l~~~~-~~~piilv~NK~Dl~~~~--~~~~~~~~~~-~--~~~~~~~iSA~~~~g 157 (178)
T d1wf3a1 86 NAVVWVVDLRHPPT--PEDELVARALKPLV-GKVPILLVGNKLDAAKYP--EEAMKAYHEL-L--PEAEPRMLSALDERQ 157 (178)
T ss_dssp SEEEEEEETTSCCC--HHHHHHHHHHGGGT-TTSCEEEEEECGGGCSSH--HHHHHHHHHT-S--TTSEEEECCTTCHHH
T ss_pred cceeeeechhhhhc--ccccchhhheeccc-cchhhhhhhcccccccCH--HHHHHHHHhh-c--ccCceEEEecCCCCC
Confidence 99999999976543 34456666665432 478999999999986542 2221111100 0 012577899999999
Q ss_pred HHHHHHHHHHHhh
Q 030193 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 i~~~~~~i~~~l~ 178 (181)
+++++++|.+.+.
T Consensus 158 i~~L~~~i~~~lp 170 (178)
T d1wf3a1 158 VAELKADLLALMP 170 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998774
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1e-25 Score=157.22 Aligned_cols=162 Identities=25% Similarity=0.416 Sum_probs=120.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+-+||+++|++|||||||+++|. ......||.++....++.+...+++||++|++.++..|..+++.++++++++|.+
T Consensus 1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 35899999999999999999993 2235788999999999999999999999999999999999999999999999998
Q ss_pred Cc----------ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------------------CCHhH----HHhhh
Q 030193 96 DR----------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------MNAAE----ITDKL 143 (181)
Q Consensus 96 ~~----------~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------------~~~~~----~~~~~ 143 (181)
+. .++.....+|..++......++|+++++||+|+... ...+. +...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 64 345667778888888777778999999999998431 11111 11111
Q ss_pred CC--CccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 144 GL--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 144 ~~--~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.. ..-....+.+++|||+++.|++++|+.+.+.+.+
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 11 1112234667789999999999999999887654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=7.5e-26 Score=155.63 Aligned_cols=160 Identities=17% Similarity=0.183 Sum_probs=112.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc---cC-------cccceEEEEEECCEEEEEEEcCCCCCccccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IP-------TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~-------t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 84 (181)
.+.++|+++|.+|+|||||+|+|++...... .+ +.......+...+..+.++|++|+..|.......+..
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence 4678999999999999999999987542211 11 2223334566788999999999999999888888899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCccCCcceEEEEcccC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+|++++|+|+.+.... ...+.+.. +.. .++|+++|+||+|+.+....+ +..+.+........+.+++++||+
T Consensus 83 ~d~~ilv~d~~~g~~~-~~~~~~~~-~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKT-QTGEHMLI-LDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp CCEEEEEEETTTCSCH-HHHHHHHH-HHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred ccccccccccccccch-hhhhhhhh-hhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 9999999999865332 22233322 222 478999999999998653322 222222111122234678999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|+|++++++.|.+.+.+
T Consensus 158 ~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNN 175 (179)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCc
Confidence 999999999999988764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.2e-25 Score=151.82 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=107.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCccc--------cccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~ 84 (181)
.+||+++|++|||||||+|+|++.... ...+ +.......+...+..+.++|++|...... ....++..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 479999999999999999999987743 2222 33344456778899999999999644322 13345678
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|++++++|..+..++..... |...+.... .+.|+++|+||+|+.+.... ..+....+++++||++|.
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~----------~~~~~~~~~~~iSAk~~~ 148 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEI-WPEFIARLP-AKLPITVVRNKADITGETLG----------MSEVNGHALIRLSARTGE 148 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHH-CHHHHHHSC-TTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTTCT
T ss_pred ccccceeeccccccchhhhhh-hhhhhhhcc-cccceeeccchhhhhhhHHH----------HHHhCCCcEEEEECCCCC
Confidence 999999999988766544443 223333222 47899999999998653211 111234689999999999
Q ss_pred CHHHHHHHHHHHh
Q 030193 165 GLYEGLDWLSNNI 177 (181)
Q Consensus 165 ~i~~~~~~i~~~l 177 (181)
|+++++++|.+.|
T Consensus 149 gi~~L~~~l~~~l 161 (161)
T d2gj8a1 149 GVDVLRNHLKQSM 161 (161)
T ss_dssp THHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=4e-25 Score=150.80 Aligned_cols=152 Identities=19% Similarity=0.189 Sum_probs=101.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--cc--cCcccceEEEEEECCEEEEEEEcCCCCC---------cccccccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQNT 85 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~~ 85 (181)
.|+++|++|||||||+|+|++.... +. ..|.......+......+.+||++|... +......++..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 6899999999999999999987643 22 2244455667888899999999999422 122233445789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
|++++++|..+.... ....+...+.. .++|+++|+||+|+.++...+......... ...++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~--~~~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREFEREVKPELYSLG-----FGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGGS-----SCSCEECBTTTTBS
T ss_pred cEEEEeecccccccc--ccccccccccc---ccccccccchhhhhhhhhhhHHHHHHHhcC-----CCCeEEEecCCCCC
Confidence 999999998754433 22333444433 468999999999987532222222211111 12457899999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030193 166 LYEGLDWLSNNIATK 180 (181)
Q Consensus 166 i~~~~~~i~~~l~~~ 180 (181)
+++++++|.+.+.++
T Consensus 152 id~L~~~i~~~l~e~ 166 (171)
T d1mkya1 152 LDTMLETIIKKLEEK 166 (171)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=5.6e-25 Score=151.91 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=107.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcc------------c
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------------P 76 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------------~ 76 (181)
...+.+||+++|++|||||||+|+|++.... ...+ +.......+...+..+.++|+||..... .
T Consensus 4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 83 (186)
T d1mkya2 4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY 83 (186)
T ss_dssp CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhH
Confidence 3466899999999999999999999987642 2222 3334445677788999999999954322 2
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceE
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWY 154 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~ 154 (181)
.....++.+|++++|+|+..... .....+...+.. .+.|+++|+||+|+..... ..++...+..........+
T Consensus 84 ~~~~~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
T d1mkya2 84 RVVDSIEKADVVVIVLDATQGIT--RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 158 (186)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhcCCEEEEeecccccch--hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence 23334567999999999975433 233333444433 4689999999999865432 2333332222111122347
Q ss_pred EEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 155 IQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 155 ~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++++||++|.|+++|++.|.+.+.+
T Consensus 159 i~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 159 LIFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999887653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.3e-24 Score=154.11 Aligned_cols=162 Identities=27% Similarity=0.435 Sum_probs=127.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+...||+++|++|||||||++++...+ ..||.++....++.+++.+++||++|++.++..|..+++.++++++|+|.
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~ 80 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVAS 80 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEET
T ss_pred hhcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEc
Confidence 347899999999999999999997554 35899999999999999999999999999999999999999999999998
Q ss_pred CCc----------ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------CCHh---------------------
Q 030193 95 NDR----------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MNAA--------------------- 137 (181)
Q Consensus 95 ~~~----------~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------~~~~--------------------- 137 (181)
++. .++......|..++......++|++|++||+|+.++ ....
T Consensus 81 s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~ 160 (221)
T d1azta2 81 SSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGE 160 (221)
T ss_dssp TGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTC
T ss_pred cccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCC
Confidence 753 345566677888888877788999999999998531 1100
Q ss_pred -----H----HHhhh----CCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 138 -----E----ITDKL----GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 138 -----~----~~~~~----~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+ +...+ ......+..+....|||++..|++.+|+.+.+.+.+
T Consensus 161 ~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 161 DPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 0 11111 111122234666789999999999999887776653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=8.8e-25 Score=150.26 Aligned_cols=154 Identities=23% Similarity=0.259 Sum_probs=103.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEE-ECCEEEEEEEcCCCCCcc-------cccccccccccE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVE-YKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~-~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d~ 87 (181)
+|+++|.+|||||||+|+|++.... .. ..++........ ..+..+++|||||..... ......+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 5999999999999999999987643 11 223433333322 346789999999953321 122344577999
Q ss_pred EEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++++|..... .+.....++... . ....++|+++|+||+|+.+....+++...+. ..+.+++++||++|.|
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAY-D-PALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 155 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHH-C-HHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhhcccccccccchhhhhhhhhcc-c-cccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCCCCC
Confidence 99999986432 222222222221 1 1113579999999999987655554444433 2355799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++++.|.+.+.+
T Consensus 156 id~L~~~i~~~l~~ 169 (180)
T d1udxa2 156 LPALKEALHALVRS 169 (180)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=2.8e-24 Score=144.91 Aligned_cols=146 Identities=25% Similarity=0.338 Sum_probs=107.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcc---------ccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~ 84 (181)
+||+++|.+|||||||+|+|++.... +..+ +.......+...+..+.+||+||..... ......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 2222 3334455677889999999999942110 112223567
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|++++|+|++++...+.. ..+ ..+ ...++++++||.|+.+....+++...+... .+++++||++|.
T Consensus 81 ad~ii~v~d~~~~~~~~~~-~~~-~~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhh-hhh-hhc-----ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCC
Confidence 9999999999987654332 222 222 357899999999999888888877766532 358899999999
Q ss_pred CHHHHHHHHHHH
Q 030193 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~i~~~~~~i~~~ 176 (181)
|+++|+++|.+.
T Consensus 148 gi~~L~~~I~ke 159 (160)
T d1xzpa2 148 GLEKLEESIYRE 159 (160)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 999999998763
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.91 E-value=7.4e-25 Score=150.96 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=101.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCc---------------cccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKI---------------RPLWRHYF 82 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------------~~~~~~~~ 82 (181)
.|+++|.+|||||||+|+|++.... +..|.+......+...+ ++++|+||.... ........
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 5899999999999999999987754 33442222334455554 568999994211 11223445
Q ss_pred ccccEEEEEEECCCcccHHH---------HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCc
Q 030193 83 QNTQGLIFVVDSNDRDRVVE---------ARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQR 151 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~ 151 (181)
+.+|++++|+|+..+..... ....+.+.+.. .++|+++|+||+|+....+ ...+...+.. .+...
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~ 155 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEI 155 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGGH
T ss_pred cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-ccccc
Confidence 67999999999964321111 11223333333 4789999999999865321 1122233322 22333
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
...++++||++|.|+++++++|.+.+.++
T Consensus 156 ~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 156 DKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 44578999999999999999999988764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.90 E-value=1.6e-23 Score=148.96 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=104.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc---cCcccceE------------------EEEEECCEEEEEEEcCCCCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNV------------------ETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~t~~~~~------------------~~~~~~~~~~~~~d~~g~~~~ 74 (181)
+++.|+|+|++++|||||+++|++...... ..+..... ..++..+..+.++|||||..|
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f 83 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence 344599999999999999999987432110 00111111 112345678999999999999
Q ss_pred ccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhC-------
Q 030193 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLG------- 144 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~------- 144 (181)
...+...+..+|++|+|+|+.+.- +.........+.. .++|+++|+||+|+.+.... ..+.....
T Consensus 84 ~~~~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (227)
T d1g7sa4 84 TTLRKRGGALADLAILIVDINEGF--KPQTQEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (227)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred cccchhcccccceEEEEEecccCc--ccchhHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence 999888889999999999997532 2223333333333 47899999999998753211 00000000
Q ss_pred ---------------CC----------ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 145 ---------------LH----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 145 ---------------~~----------~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.. .......+++++||++|.|++++++.|.....
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~ 217 (227)
T d1g7sa4 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00 00112468999999999999999999877543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=1.3e-22 Score=142.26 Aligned_cols=157 Identities=26% Similarity=0.361 Sum_probs=110.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE---CCEEEEEEEcCCCCCcc-cccccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~-~~~~~~~~~~d~~i~v~d~ 94 (181)
+|+++|++|||||||+++|+++.+....||.+.....+.. .+..+.+||++|++.++ ..+..++..++.+++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 6999999999999999999999887777777777666654 45789999999998886 4567888999999999999
Q ss_pred CCcccH-HHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------------------CCcc
Q 030193 95 NDRDRV-VEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG-----------------------LHSL 148 (181)
Q Consensus 95 ~~~~s~-~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----------------------~~~~ 148 (181)
++..++ ....+++...+.. ....++|+++|+||+|+.+....+++...+. ....
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 986653 4444455444321 1124689999999999987665554433210 0000
Q ss_pred -----------CCcceEEEEcccCCCCC------HHHHHHHHHH
Q 030193 149 -----------RQRHWYIQSTCATSGEG------LYEGLDWLSN 175 (181)
Q Consensus 149 -----------~~~~~~~~~~S~~~~~~------i~~~~~~i~~ 175 (181)
-+..+.++++|++++.+ ++++-+|+.+
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence 01346789999999887 6667666654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=7.2e-24 Score=147.40 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=98.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccceEEEEEECCEEEEEEEcCCCCCc-------------ccc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDKI-------------RPL 77 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~-------------~~~ 77 (181)
...-.+|+++|++|||||||+|+|++.... +..++......... ....+.+.|++|-... ...
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-INDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE-ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc-ccccceEEEEEeeccccccccccchhhhHHhh
Confidence 344559999999999999999999986532 22222222222222 2345566777773211 112
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
+......++++++++|+.++. +.....+.+.+.. .++|+++|+||+|+......++.........-.....++++
T Consensus 99 ~~~~~~~~~~vi~viD~~~~~--~~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (195)
T d1svia_ 99 YITTREELKAVVQIVDLRHAP--SNDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred hhccccchhhhhhhhhccccc--ccccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 233445679999999997543 2333344444444 46899999999998765544433322211111223457899
Q ss_pred cccCCCCCHHHHHHHHHHHhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+||++|.|+++++++|.+.+.
T Consensus 174 ~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999998874
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=1.2e-23 Score=146.34 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=106.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc------cCcccceEEE--E---------------------EECCEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVET--V---------------------EYKNISFTV 65 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~t~~~~~~~--~---------------------~~~~~~~~~ 65 (181)
+..++|+++|+.++|||||+++|++...... .-|....+.. . ......+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 4568999999999999999999987432110 1111111111 1 112356899
Q ss_pred EEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHh
Q 030193 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITD 141 (181)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~ 141 (181)
+|+|||.+|.......+..+|++++|+|+.+....+...+.+...... ...++++++||+|+.+..... .+..
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence 999999999999888889999999999997643222223322222111 135688999999998753222 2222
Q ss_pred hhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 142 KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 142 ~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.+. ......++++++||++|+|+++|++.+.+.+.
T Consensus 160 ~~~--~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 160 FIE--GTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred Hhc--cccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 222 22234578999999999999999999988763
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=2.5e-23 Score=143.51 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cc-cCcccceEEEEEEC-CEEEEEEEcCCCC----Cccccc---cccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK-NISFTVWDVGGQD----KIRPLW---RHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~~~d~~g~~----~~~~~~---~~~~~~~d 86 (181)
.+|+++|++|||||||+|+|++.... +. ..|........... +..+++|||||.. ...... ...+..++
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 36999999999999999999987643 22 23555555555554 4679999999942 111111 12235688
Q ss_pred EEEEEEECCCcccHHHHH----HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccC
Q 030193 87 GLIFVVDSNDRDRVVEAR----DELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
.++++++........... .............++|+++|+||+|+.+.... +.+...+. .+++++.+||+
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~~iSA~ 155 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAV 155 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSC
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------cCCcEEEEECC
Confidence 999999876543222111 12222333444457899999999999764322 22332221 24578899999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|++++++.|.+.+.+
T Consensus 156 ~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 156 TREGLRELLFEVANQLEN 173 (185)
T ss_dssp CSSTTHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHhhhh
Confidence 999999999999998854
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.88 E-value=8.1e-23 Score=143.17 Aligned_cols=160 Identities=17% Similarity=0.063 Sum_probs=103.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc------cCcccceE--EE--------------------------EEECCEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNV--ET--------------------------VEYKNIS 62 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~t~~~~~--~~--------------------------~~~~~~~ 62 (181)
.++|+++|+.++|||||+++|++...... ..+..... .. .......
T Consensus 8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 87 (205)
T d2qn6a3 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR 87 (205)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence 37999999999999999999986321100 00000000 00 0111247
Q ss_pred EEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030193 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (181)
Q Consensus 63 ~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~ 142 (181)
+.++|+|||..|.......+..+|++|+|+|+.+.-.-....+.+...... ...|+++++||+|+.+..........
T Consensus 88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~~~ 164 (205)
T d2qn6a3 88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQ 164 (205)
T ss_dssp EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHHHH
Confidence 899999999999888888889999999999997632112222333222211 13589999999999865432222111
Q ss_pred h--CCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 143 L--GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 143 ~--~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
. .+......+++++++||++|.|++++++.|..++..
T Consensus 165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 1 112233346789999999999999999999988754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.86 E-value=6.2e-22 Score=137.29 Aligned_cols=158 Identities=18% Similarity=0.116 Sum_probs=110.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------c-----ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE-------I-----VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~-------~-----~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
.++|+++|+.++|||||+++|++.. + ... .-|.+.....+...+..+.++|+|||.+|...
T Consensus 3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 82 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (196)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence 4799999999999999999997410 0 000 11344455667788899999999999999988
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-Hh----HHHhhhCCCccCCcc
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AA----EITDKLGLHSLRQRH 152 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~ 152 (181)
....+..+|++++|+|+.+... .+..+.+...... ...|+|+++||+|+..... .+ ++...+....+....
T Consensus 83 ~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 158 (196)
T d1d2ea3 83 MITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (196)
T ss_dssp HHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence 8888899999999999975322 2333333332221 2468999999999875322 12 222222222233446
Q ss_pred eEEEEcccCCC----------CCHHHHHHHHHHHhh
Q 030193 153 WYIQSTCATSG----------EGLYEGLDWLSNNIA 178 (181)
Q Consensus 153 ~~~~~~S~~~~----------~~i~~~~~~i~~~l~ 178 (181)
+|++++|+++| .|+.+|++.+.+.+.
T Consensus 159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 78999999998 589999999887764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=5.3e-21 Score=133.54 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=97.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC--------c-----ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE--------I-----VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~--------~-----~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 76 (181)
.+||+++|++++|||||+++|+... . .+. .-|++.....+.+.+.+++++|||||.+|..
T Consensus 3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~ 82 (204)
T d2c78a3 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK 82 (204)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence 4799999999999999999996320 0 011 2266667778889999999999999999999
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCccCC
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQ 150 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~~~ 150 (181)
.....++.+|++|+|+|+.+.... +..+.|..... .++| +++++||+|+.+..+ .+ ++...+....+..
T Consensus 83 ~~~~~~~~aD~avlVvda~~Gv~~-qt~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 157 (204)
T d2c78a3 83 NMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 157 (204)
T ss_dssp HHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 988888999999999999754332 33344443333 3555 788899999876321 12 2233232222333
Q ss_pred cceEEEEcccCC
Q 030193 151 RHWYIQSTCATS 162 (181)
Q Consensus 151 ~~~~~~~~S~~~ 162 (181)
..+++++.|+..
T Consensus 158 ~~i~~i~~sa~~ 169 (204)
T d2c78a3 158 DEVPVIRGSALL 169 (204)
T ss_dssp TTSCEEECCHHH
T ss_pred ccceeeeeechh
Confidence 446678888753
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.83 E-value=7.9e-20 Score=128.87 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=103.4
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCC--cc------------------c----------------ccCcccceEEE
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGE--IV------------------T----------------TIPTIGFNVET 55 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~------------------~----------------~~~t~~~~~~~ 55 (181)
+.+...+||+++|+.++|||||+++|+... .. . ...+.......
T Consensus 4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 83 (222)
T d1zunb3 4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY 83 (222)
T ss_dssp TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence 345678899999999999999999996311 00 0 01133344455
Q ss_pred EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCCC
Q 030193 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAM 134 (181)
Q Consensus 56 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~~~ 134 (181)
+...+..+.++|+|||..|..........+|++++|+|+.+...- +..+.+ ..+.. .+ ..+++++||+|+.+..
T Consensus 84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~-Qt~e~~-~~~~~---~gv~~iiv~vNK~D~~~~~ 158 (222)
T d1zunb3 84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHS-YIASL---LGIKHIVVAINKMDLNGFD 158 (222)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHH-HHHHH---TTCCEEEEEEECTTTTTSC
T ss_pred EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCccc-chHHHH-HHHHH---cCCCEEEEEEEcccccccc
Confidence 666789999999999999999988888999999999999753222 222222 22222 24 4589999999998643
Q ss_pred C------HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 135 N------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 ~------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+ ..++...+....+....++++++||.+|.|+.
T Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 2 12223333333445567889999999999884
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=4.3e-19 Score=128.22 Aligned_cols=112 Identities=21% Similarity=0.142 Sum_probs=86.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--------------cccc-------cCcccceEEEEEECCEEEEEEEcCCCCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--------------~~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 74 (181)
+..||+++|+.|+|||||+.+++... ..+. .-|+......+.+++.+++++||||+.+|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 34489999999999999999996310 0011 12555666788999999999999999999
Q ss_pred ccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.......++.+|++|+|+|+.+.-. ......|..... .++|.++++||+|...
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~-~~T~~~w~~a~~----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVE-PQSETVWRQAEK----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSC-HHHHHHHHHHHT----TTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhhhheEEeccccCCcc-hhHHHHHHHHHH----cCCCEEEEEecccccc
Confidence 9999999999999999999975433 344455655443 4899999999999863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=4.3e-19 Score=121.13 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=97.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--ccc-Ccccc-eEEEEEECCEEEEEEEcCCCCC---------cccccccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGF-NVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQNT 85 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~-~t~~~-~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~~ 85 (181)
.|+++|.+|||||||+|+|++.... +.. .+... ...........+..+|++|... ...........+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV 86 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence 5899999999999999999988754 222 23322 2334455677888899998432 122233334568
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH-HHhhhCCCccCCcceEEEEcccCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE-ITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
++++++.|..+... .....+..... ...|.++|+||.|+..... ... ....... -...+++++||++|
T Consensus 87 ~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g 156 (179)
T d1egaa1 87 ELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLASQ----MNFLDIVPISAETG 156 (179)
T ss_dssp EEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT----SCCSEEEECCTTTT
T ss_pred ceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhhh----cCCCCEEEEeCcCC
Confidence 88999999875432 22233333332 3578999999999875421 111 1111111 12347899999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|+++|++.|.+.+.+
T Consensus 157 ~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 157 LNVDTIAAIVRKHLPE 172 (179)
T ss_dssp TTHHHHHHHHHTTCCB
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999988754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.79 E-value=1.4e-18 Score=125.20 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=84.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC--------c------ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE--------I------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~--------~------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 76 (181)
.+|+++|+.++|||||+.+++... . .+. ..|.......+.+++.+++++|||||.+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence 379999999999999999995311 0 011 1255566778899999999999999999999
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.....++.+|++++|+|+.+.-. ......|..... .++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~-~~t~~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCCcc-chhHHHHHhhhh----ccccccccccccccc
Confidence 99999999999999999975433 233444444433 479999999999964
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.2e-19 Score=126.76 Aligned_cols=119 Identities=24% Similarity=0.302 Sum_probs=85.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccc----cccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY----FQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~~~d~~i~v 91 (181)
..++|+++|++|||||||+|+|++..+... .|.......++..+..+.+||+||++.++..+..+ ...++.++++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 357899999999999999999999876432 23334444555677889999999998876665544 3456899999
Q ss_pred EECCC-cccHHHHHHHHHHH---hcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 92 VDSND-RDRVVEARDELHRM---LNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~~---~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
+|+.+ ..++.....++... .......++|+++|+||+|+.+...
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 99764 55556655554332 2222335799999999999976543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.1e-18 Score=119.53 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=90.3
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCcccc---cCccc-ceEEEEEECCEEEEEEEcCCC-CCccc-------c
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG-FNVETVEYKNISFTVWDVGGQ-DKIRP-------L 77 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~t~~-~~~~~~~~~~~~~~~~d~~g~-~~~~~-------~ 77 (181)
++.|.++.++|+++|.+|||||||+|++++...... .++.. .........+......+.++. ..... .
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA 88 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence 566778899999999999999999999998875422 22222 222222334444443333331 11110 1
Q ss_pred ---cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-ccCCcce
Q 030193 78 ---WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-SLRQRHW 153 (181)
Q Consensus 78 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (181)
........+.++.+.+....... .....+..... ...++++++||+|+.+..........+... .......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (188)
T d1puia_ 89 LGEYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 163 (188)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred hhhhhhhhhheeEEEEeecccccchh-HHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence 11112334556666666543322 22223333222 367899999999988754333222111100 1112346
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+++++||++|.|+++|++.|.+.+
T Consensus 164 ~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 164 QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 889999999999999999998765
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2e-18 Score=122.93 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=101.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC---------------------C-c-----cc-------ccCcccceEEEEEECCE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG---------------------E-I-----VT-------TIPTIGFNVETVEYKNI 61 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~---------------------~-~-----~~-------~~~t~~~~~~~~~~~~~ 61 (181)
..++|+++|+.++|||||+.+|+.. . + .+ ..-|.+.....+...++
T Consensus 5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 84 (239)
T d1f60a3 5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 84 (239)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence 3589999999999999999999521 0 0 00 12266667788899999
Q ss_pred EEEEEEcCCCCCcccccccccccccEEEEEEECCCcccH-------HHHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCC
Q 030193 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV-------VEARDELHRMLNEDELRDA-VLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~ 133 (181)
+++++|+|||.+|...+......+|++|+|+|+.+. .| .+..+.+.-... .++ ++|+++||+|..+.
T Consensus 85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G-~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-EFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-HHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC-ccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCC
Confidence 999999999999999999999999999999999742 11 122333322211 244 58999999998764
Q ss_pred CC--HhH----HHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 134 MN--AAE----ITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 134 ~~--~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
.. .++ +...+....+....++++++|+.+|.|+
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 32 122 2222211222334567889999999886
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.75 E-value=1.2e-18 Score=124.60 Aligned_cols=159 Identities=17% Similarity=0.224 Sum_probs=90.5
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCC--c-------------------------cc-------ccCcccceEE
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVE 54 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~-------------------------~~-------~~~t~~~~~~ 54 (181)
++....+..++|+++|+.++|||||+.+|+... . .. ...+......
T Consensus 16 ~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~ 95 (245)
T d1r5ba3 16 LKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA 95 (245)
T ss_dssp HHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC
T ss_pred HHHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccc
Confidence 344445667899999999999999999994210 0 00 0112223334
Q ss_pred EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCC-eEEEEEeC
Q 030193 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDA-VLLVFANK 127 (181)
Q Consensus 55 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-piivv~nK 127 (181)
.+...+..+.+.|+|||..|..........+|++++|+|+.+.. ++ ....+.+.-. .. .++ ++++++||
T Consensus 96 ~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~---~~i~~iiv~iNK 171 (245)
T d1r5ba3 96 YFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINK 171 (245)
T ss_dssp EEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEEC
T ss_pred ccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HH---cCCCeEEEEEEc
Confidence 45667889999999999999999998889999999999997521 00 0122222221 11 234 58899999
Q ss_pred CCCCCCCC----HhHHHhhhCC---C--cc-CCcceEEEEcccCCCCCHHHHHH
Q 030193 128 QDLPNAMN----AAEITDKLGL---H--SL-RQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 128 ~D~~~~~~----~~~~~~~~~~---~--~~-~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+|++.... .+++...+.. . .. ....++++++||++|+|+.++++
T Consensus 172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 99875332 2233222211 0 01 11257899999999999987643
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.74 E-value=4.5e-18 Score=120.22 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=95.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC---------------------------ccc-------ccCcccceEEEEEECCEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE---------------------------IVT-------TIPTIGFNVETVEYKNIS 62 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~---------------------------~~~-------~~~t~~~~~~~~~~~~~~ 62 (181)
.++|+++|+.++|||||+.+|+... ..+ ..-+.......++.+++.
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 82 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 82 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence 4799999999999999999995310 000 011333444567778899
Q ss_pred EEEEEcCCCCCcccccccccccccEEEEEEECCCccc------HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030193 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR------VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (181)
Q Consensus 63 ~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 136 (181)
++++|+|||..|........+-+|++|+|+|+.+-.. .....+.+.-.... ...++++++||+|+......
T Consensus 83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~~~ 159 (224)
T d1jnya3 83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPPYD 159 (224)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSSTTC
T ss_pred eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCcccc
Confidence 9999999999999999999999999999999975310 11122222211111 23568999999998753211
Q ss_pred ----hHH----HhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 137 ----AEI----TDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 137 ----~~~----~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+.+ ...+..-.+....++++++||.+|.|+.+
T Consensus 160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 111 11111112334467889999999999753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=6.1e-16 Score=117.72 Aligned_cols=156 Identities=10% Similarity=0.055 Sum_probs=91.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-------ccCcccceEEEEEEC-CEEEEEEEcCCCCCcccc-----cccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPL-----WRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~-----~~~~ 81 (181)
...++|+|+|.+|+|||||+|+|+|..... ..+|+. ....+... ...+.+|||||-...... ....
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~-~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~ 132 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 132 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCce-eeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhh
Confidence 457999999999999999999999854321 111221 12223333 346889999995432221 1223
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------CC----HhHHHhhhC--CC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------MN----AAEITDKLG--LH 146 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---------~~----~~~~~~~~~--~~ 146 (181)
...+|.+|++.|.. +...+..+...+.+ .++|+++|.||+|.... .. .++++.... +.
T Consensus 133 ~~~~d~~l~~~~~~----~~~~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 133 FYEYDFFIIISATR----FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp GGGCSEEEEEESSC----CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcceEEEEecCCC----CCHHHHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 45688888887642 33334444444444 47899999999996310 11 111211110 00
Q ss_pred ccCCcceEEEEcccCC--CCCHHHHHHHHHHHhh
Q 030193 147 SLRQRHWYIQSTCATS--GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~--~~~i~~~~~~i~~~l~ 178 (181)
...-..-++|.+|..+ ..++.++.+.+.+.+.
T Consensus 206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~ 239 (400)
T d1tq4a_ 206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 239 (400)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence 0011123577788764 4589999999988765
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=5.8e-15 Score=109.48 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=78.1
Q ss_pred ccc-eEEEEcCCCCChHHHHhhhhcCC------------cccccC-------cccceEEEEEE----------------C
Q 030193 16 KEM-RILMVGLDAAGKTTILYKLKLGE------------IVTTIP-------TIGFNVETVEY----------------K 59 (181)
Q Consensus 16 ~~~-~i~v~G~~~~GKSsli~~l~~~~------------~~~~~~-------t~~~~~~~~~~----------------~ 59 (181)
..+ +|+|+|+.++|||||+.+|+... +.+..+ |+......+.+ +
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 94 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence 445 69999999999999999996211 111111 22222222322 4
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+.++++|||||.+|.......++.+|++++|+|+.+.-.. .....|..... .++|+++++||+|..
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~-qT~~~~~~a~~----~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV-QTETVLRQALG----ERIKPVVVINKVDRA 161 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcch-hHHHHHHHHHH----cCCCeEEEEECcccc
Confidence 57899999999999999999999999999999999764332 33344444444 479999999999964
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.4e-15 Score=111.18 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=89.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc------CCc--ccccCcccce-------------------EE--EE---------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL------GEI--VTTIPTIGFN-------------------VE--TV--------- 56 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~--~~~~~t~~~~-------------------~~--~~--------- 56 (181)
.+.++|+|.|+||+|||||+++|.. ... ....|+.... .+ ..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 4688999999999999999999963 221 1112221110 10 00
Q ss_pred -----------EECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 57 -----------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 57 -----------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+..++.+.+++|.|....... +...+|.+++|.++..-+..+.....+.++ +-++|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~---i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~Vv 199 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVI 199 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEE
T ss_pred hhhhhHHHHHHHhcCCCeEEEeeccccccchh---hhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEE
Confidence 003456778888876444332 335699999999886554444433444333 348999
Q ss_pred eCCCCCCCCCHh----HHHhhh--CCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 126 NKQDLPNAMNAA----EITDKL--GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 126 nK~D~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
||+|+....... +....+ .......+..+++.|||.+|.|++++++.|.+..
T Consensus 200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 999987533222 122211 1122234556899999999999999999997743
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.55 E-value=2.1e-14 Score=103.08 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=77.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc--c--cCcccceEEEEEECCEEEEEEEcCCCCCcc-------cccc--cc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWR--HY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~--~~ 81 (181)
...++|+++|.+|+|||||+|++++..... . ..|...........+..+.++||||-.... .... ..
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~ 109 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 109 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence 567999999999999999999999987442 1 225555666677889999999999942211 1111 11
Q ss_pred cccccEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 82 FQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
....++++||++++... .-....+.+...+... .-.++++|+||+|...
T Consensus 110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP 161 (257)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence 23578999999986431 1122223344443321 1257999999999875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.49 E-value=1.5e-13 Score=101.39 Aligned_cols=151 Identities=14% Similarity=0.140 Sum_probs=93.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCc-------------------cc-ceEEEE----------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPT-------------------IG-FNVETV---------- 56 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~~t-------------------~~-~~~~~~---------- 56 (181)
.+.+.|+|.|+||+|||||+++|... .. ....|+ .+ ..+.+-
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 46789999999999999999999642 10 001110 00 111110
Q ss_pred -----------EECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 57 -----------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 57 -----------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+..++.+.+++|.|......... ..+|.+++|..+...+..+....-+.+ .+-++|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~---~~~D~~v~v~~p~~GD~iQ~~k~gilE---------~aDi~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDELQGIKKGIFE---------LADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC------CCTTHHH---------HCSEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhh---cccceEEEEeeccchhhhhhhhhhHhh---------hhheeeE
Confidence 11467899999999766555544 449999999999765544433222222 3459999
Q ss_pred eCCCCCCCCCHh-----HHHhhhCCC--ccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 126 NKQDLPNAMNAA-----EITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 126 nK~D~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
||+|+....... +....+... ....+..+++.||+.++.|+++++++|.+..
T Consensus 197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 999987643322 122222222 1223456799999999999999999997754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.47 E-value=1.8e-15 Score=107.50 Aligned_cols=114 Identities=12% Similarity=-0.021 Sum_probs=66.3
Q ss_pred CEEEEEEEcCCCCCcccccccc-----cccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHY-----FQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
...+.+.|+||+..+....... ....+.+++++|+.. ++.+............+ -..|.++|+||+|+.
T Consensus 94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~ 170 (244)
T d1yrba1 94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL 170 (244)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeeccccc
Confidence 3558899999987654332221 123568899999853 22222221111111111 268999999999998
Q ss_pred CCCCHhHHHh----------hhC--CCcc-------------CCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 132 NAMNAAEITD----------KLG--LHSL-------------RQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 132 ~~~~~~~~~~----------~~~--~~~~-------------~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
.....+.+.. ... .... ....++++++||++|+|++++++.|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 171 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6432222111 000 0000 0124578899999999999999998774
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=1.5e-10 Score=84.39 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=68.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc-c-cccCcccce-EEE-------------------------------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFN-VET------------------------------------- 55 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~~~~t~~~~-~~~------------------------------------- 55 (181)
..++|+|+|+.++|||||+|+|++..+ + ...|++... ...
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 456799999999999999999999874 2 333332211 101
Q ss_pred --------------EEEC-CEEEEEEEcCCCCCc-------------ccccccccccccE-EEEEEECCCcccHHHHHHH
Q 030193 56 --------------VEYK-NISFTVWDVGGQDKI-------------RPLWRHYFQNTQG-LIFVVDSNDRDRVVEARDE 106 (181)
Q Consensus 56 --------------~~~~-~~~~~~~d~~g~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~ 106 (181)
+... ...+.++|+||-... ......|+..++. +++|.++....+-.....
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~- 183 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK- 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH-
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH-
Confidence 0111 134889999993211 1334455666664 555666654433333333
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 107 LHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 107 ~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.+.+.. ...++++|+||+|..+.
T Consensus 184 ~~~~~~~---~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 184 IAKEVDP---QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHCT---TCSSEEEEEECGGGSCT
T ss_pred HHHHhCc---CCCceeeEEeccccccc
Confidence 3333332 35789999999998765
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.08 E-value=9.5e-11 Score=85.71 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
-++|+|+|+.++|||||+|+|+|..+
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999998764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.06 E-value=2.4e-10 Score=84.02 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=45.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEE----EEE--------------------ECCEEEEEEEcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVE----TVE--------------------YKNISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~----~~~--------------------~~~~~~~~~d~~g 70 (181)
.+|+++|.|+||||||.|+|++.... .+.| |.+.+.. ..+ .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 47999999999999999999886532 2222 3222211 111 1235799999999
Q ss_pred CC-------CcccccccccccccEEEEEEECCC
Q 030193 71 QD-------KIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 71 ~~-------~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
-- ......-..++.+|+++.|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 31 122223344578999999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.99 E-value=8.8e-10 Score=80.16 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=58.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECC-----------------EEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~ 73 (181)
...++|+++|.|+||||||.|++++... ..+.| |.+.+...+...+ ..+++.|+||--.
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4679999999999999999999997643 23333 5555555555433 5789999998211
Q ss_pred -------cccccccccccccEEEEEEECCC
Q 030193 74 -------IRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 -------~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
.-...-..++.+|+++.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 11223344588999999999854
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.96 E-value=4.9e-10 Score=80.84 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=53.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-----------------EEEEEEEcCCCCC---
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~--- 73 (181)
.++|+++|-|+||||||.|++++.... .. ..|.+.+...+...+ ..+++.|+||--.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 469999999999999999999977643 22 234444444444432 3688999999321
Q ss_pred ----cccccccccccccEEEEEEECC
Q 030193 74 ----IRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
.-...-+.++.+|+++.|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 2222334457899999999873
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=3.9e-09 Score=75.77 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=38.1
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccccC----cccceEEEEEECCEEEEEEEcCCC
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
.....++|+|+|.||||||||+|+|.+.......+ |.+... +.. +-.+.++||||-
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~--i~~-~~~~~l~DTPGi 167 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGI 167 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE--EEC-CCCeEEecCCCc
Confidence 34578999999999999999999999987553333 333322 221 345899999994
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.45 E-value=3.8e-08 Score=70.49 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=64.2
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
....+..+|++|+|+|+-.|.+.. ...+.++++ ++|.++|+||+|+.+....+++...+... +..++.
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~--~~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~-----~~~~i~ 76 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSR--NPMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFENQ-----GIRSLS 76 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTS--CHHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHTT-----TCCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCCCCC--CHHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHHhc-----CCccce
Confidence 344578899999999996654432 234555553 57999999999999876566666555432 335778
Q ss_pred cccCCCCCHHHHHHHHHHHhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+|+.++.+..++.+.+.+.+.
T Consensus 77 isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 77 INSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred eecccCCCccccchhhhhhhh
Confidence 999999999888887766554
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.39 E-value=1.5e-07 Score=65.11 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=58.7
Q ss_pred cccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
..+.|.+++|+.+.+|. +...+++++..... .++|.++|+||+|+.++...+.+..... .....++++.+|+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~---~~~~~~~v~~vSa 80 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEE---IYSGLYPIVKTSA 80 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH---HHTTTSCEEECCT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhc---ccccceeEEEecc
Confidence 36789999999987654 44445555444333 4899999999999987544333332221 1112346889999
Q ss_pred CCCCCHHHHHHHHH
Q 030193 161 TSGEGLYEGLDWLS 174 (181)
Q Consensus 161 ~~~~~i~~~~~~i~ 174 (181)
+++.|++++.+.+.
T Consensus 81 ~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 81 KTGMGIEELKEYLK 94 (225)
T ss_dssp TTCTTHHHHHHHHS
T ss_pred ccchhHhhHHHHhc
Confidence 99999999988763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=5.3e-07 Score=62.24 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-..+++|++|||||||+|+|.++.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchh
Confidence 4567899999999999999998764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=2.9e-06 Score=58.61 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=36.8
Q ss_pred EEEEEEcCCCCCcccccccc--------cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 62 SFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
...++++.|-..-....... .-..+.++.|+|+............+...+.. .-++|+||+|+.++
T Consensus 91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~------AD~ivlNK~Dl~~~ 164 (222)
T d1nija1 91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAGE 164 (222)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT------CSEEEEECTTTCSC
T ss_pred ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh------CCcccccccccccH
Confidence 34677777754332221111 11357889999997654332222333344433 23899999999754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.20 E-value=7.3e-08 Score=66.86 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=59.2
Q ss_pred cccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
..+.|.+++|+++.+|. ++..+++++..... .+++.++|+||+|+.+..+.++....+ ...+...+++++.+|+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~-~~~y~~~g~~v~~~Sa 82 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAY-AEDYRNIGYDVYLTSS 82 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHH-HHHHHHHTCCEEECCH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHH-HHHHhhccccceeeec
Confidence 36889999999987653 45555555544433 589999999999998754433322211 1122334567899999
Q ss_pred CCCCCHHHHHHHH
Q 030193 161 TSGEGLYEGLDWL 173 (181)
Q Consensus 161 ~~~~~i~~~~~~i 173 (181)
+++.|++++.+.+
T Consensus 83 ~~~~gl~~L~~~l 95 (231)
T d1t9ha2 83 KDQDSLADIIPHF 95 (231)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CChhHHHHHHHhh
Confidence 9999999887655
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.98 E-value=1.7e-06 Score=57.26 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
+||+++|++|+|||||++.+++.-
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l 24 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhcC
Confidence 489999999999999999998643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.96 E-value=4.5e-06 Score=56.87 Aligned_cols=123 Identities=18% Similarity=0.161 Sum_probs=66.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC------c-----ccccC-----------cccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE------I-----VTTIP-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~------~-----~~~~~-----------t~~~~~~~~----------------- 56 (181)
+.--|+++|++||||||.+-+|.... . ..+.+ ..+..+...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 84 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM 84 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence 44567899999999999988874311 0 00110 111111111
Q ss_pred EECCEEEEEEEcCCCCCcccc----ccccc--------ccccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEE
Q 030193 57 EYKNISFTVWDVGGQDKIRPL----WRHYF--------QNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLV 123 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piiv 123 (181)
...+..+.++||+|...+... +..+. ...+-.++|+|++.. +........+.. +. +--+
T Consensus 85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~-~~-------~~~l 156 (207)
T d1okkd2 85 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA-VG-------LTGV 156 (207)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHH-HC-------CSEE
T ss_pred HHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhc-cC-------CceE
Confidence 013568999999995443321 11111 245788999999743 333333332222 22 2367
Q ss_pred EEeCCCCCCCC-CHhHHHhhhCCC
Q 030193 124 FANKQDLPNAM-NAAEITDKLGLH 146 (181)
Q Consensus 124 v~nK~D~~~~~-~~~~~~~~~~~~ 146 (181)
++||.|....- ..-.+....+.+
T Consensus 157 I~TKlDet~~~G~~l~~~~~~~~P 180 (207)
T d1okkd2 157 IVTKLDGTAKGGVLIPIVRTLKVP 180 (207)
T ss_dssp EEECTTSSCCCTTHHHHHHHHCCC
T ss_pred EEeccCCCCCccHHHHHHHHHCCC
Confidence 99999976543 333455555554
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.96 E-value=2.9e-06 Score=57.89 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=39.5
Q ss_pred CCEEEEEEEcCCCCCcccc----cccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+..+.++||+|....... +..+ ..+.+-+++|.|+...+.-......+.+.+. +--+++||.|...
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------VTGLVLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC-------CCEEEEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC-------CCeeEEeecCccc
Confidence 4568899999995443221 1112 1356889999999654322222233333322 2358899999654
Q ss_pred C
Q 030193 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 164 ~ 164 (207)
T d1ls1a2 164 R 164 (207)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=9.2e-06 Score=55.55 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
....-|+++|++||||||.+-+|.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455567899999999999988775
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.92 E-value=2.3e-06 Score=59.15 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=32.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc----------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.-..+++|++|+|||||+|+|.++.... ..+|+.... -+...+ --++||||-..+.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~-l~~~~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE-LIHTSG--GLVADTPGFSSLE 162 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC-EEEETT--EEEESSCSCSSCC
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEE-EEecCC--CEEEECCcccccc
Confidence 3456799999999999999998864211 112332221 122333 3578999965443
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.85 E-value=3e-06 Score=56.17 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-+|+|.|++|||||||+++|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.84 E-value=1.5e-05 Score=54.39 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=37.2
Q ss_pred CCEEEEEEEcCCCCCccc------cccccc--ccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 59 KNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
.+..+.++||+|...+.. ....+. ...+-+++|+|++... ........+ ... + +--+++||.|
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~-~~~------~-~~~lI~TKlD 164 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN-QAS------K-IGTIIITKMD 164 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH-HHC------T-TEEEEEECTT
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh-ccc------C-cceEEEeccc
Confidence 456899999999543321 111111 2367889999996432 222222211 111 2 2347799999
Q ss_pred CCCC
Q 030193 130 LPNA 133 (181)
Q Consensus 130 ~~~~ 133 (181)
....
T Consensus 165 et~~ 168 (211)
T d1j8yf2 165 GTAK 168 (211)
T ss_dssp SCSC
T ss_pred CCCc
Confidence 7543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.81 E-value=4.6e-06 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.+|++.|+|||||||+++.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999954
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.80 E-value=6.1e-06 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+.++|++.|++||||||+++.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=1.1e-05 Score=55.11 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=42.7
Q ss_pred CCEEEEEEEcCCCCCccc----ccc---cccc-----cccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 59 KNISFTVWDVGGQDKIRP----LWR---HYFQ-----NTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~----~~~---~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+++.+.++||+|...... ... ...+ ..+-.++|+|+... +........+. .+ -+--+++
T Consensus 90 ~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~-~~-------~~~~lIl 161 (211)
T d2qy9a2 90 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE-AV-------GLTGITL 161 (211)
T ss_dssp TTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHH-HS-------CCCEEEE
T ss_pred cCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhh-cc-------CCceEEE
Confidence 356789999999533221 111 1111 25689999999632 22222222221 11 2447899
Q ss_pred eCCCCCCCCCH-hHHHhhhCCC
Q 030193 126 NKQDLPNAMNA-AEITDKLGLH 146 (181)
Q Consensus 126 nK~D~~~~~~~-~~~~~~~~~~ 146 (181)
||.|....-.. -.+....+.+
T Consensus 162 TKlDe~~~~G~~l~~~~~~~~P 183 (211)
T d2qy9a2 162 TKLDGTAKGGVIFSVADQFGIP 183 (211)
T ss_dssp ECCTTCTTTTHHHHHHHHHCCC
T ss_pred eecCCCCCccHHHHHHHHHCCC
Confidence 99998654432 2344444443
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.68 E-value=1.1e-05 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+.++|+++|+|||||||++..|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999964
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=9.3e-06 Score=52.99 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
-|+|+|++|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.67 E-value=1.1e-05 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
++|+|+|+|||||||++..|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.65 E-value=1.4e-05 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+.++|+++|+|||||||+...|...
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999753
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.65 E-value=1.1e-05 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+..+|+++|++||||||++..|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=1.5e-05 Score=52.83 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
++|+++|+|||||||+++.|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.59 E-value=1.8e-05 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+++|+|||||||++..|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998653
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=2.1e-05 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++|+++|+|||||||++..|...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.57 E-value=1.8e-05 Score=50.74 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|++.|+|||||||++++|...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999998654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.56 E-value=2.2e-05 Score=52.62 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|+|+|+|||||||++..|..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999965
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=2.4e-05 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+|+++|+|||||||.++.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.51 E-value=2.3e-05 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-|++.|++||||||+++.|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999753
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00012 Score=51.86 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=40.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-c-----ccCcccceEEEEE---ECCEEEEEEEcCCCCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-T-----TIPTIGFNVETVE---YKNISFTVWDVGGQDK 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~-----~~~t~~~~~~~~~---~~~~~~~~~d~~g~~~ 73 (181)
..=|.|+|+.++|||+|+|.|++.... . ...|.|+-..... ..+..+.++||.|...
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence 335669999999999999999987632 1 1236665443332 2457899999999543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=3.1e-05 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-+|.++|++||||||+...|...
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988653
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.42 E-value=3.5e-05 Score=50.30 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030193 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~ 39 (181)
+.|+|.+|||||||++++..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999965
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.40 E-value=4.8e-05 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+.+-|.++|.+||||||+.+.|..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999988864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.39 E-value=7.3e-05 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..++-|+|.|++|||||||++.|..
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999999953
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=4.4e-05 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+.|+|+|+|||||||.+..|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=4.9e-05 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=+++|+|++|||||||++.+.+-.
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45589999999999999999998754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.36 E-value=4.3e-05 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030193 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~ 38 (181)
++|+++|.+||||||+.+.+.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 578999999999999988884
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=6.2e-05 Score=49.58 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....-|+++|.|||||||++.++..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567889999999999999999864
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00011 Score=49.14 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=31.5
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccC
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 47 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~ 47 (181)
+..+..-..++.+-+++++|+||+|||+++..|...-.....|
T Consensus 31 i~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp 73 (195)
T d1jbka_ 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP 73 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCC
Confidence 3444555555678899999999999999999987655443333
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.33 E-value=5.6e-05 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-|++.|++||||||+.+.|...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=5.1e-05 Score=49.80 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.30 E-value=5.7e-05 Score=49.70 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030193 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~ 38 (181)
-|+|.|++||||||+++.|.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999884
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00013 Score=51.36 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=31.9
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccC
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 47 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~ 47 (181)
+..+..-+.+..+-+++++|+||+|||+++..|...-.....|
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp 69 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVP 69 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcc
Confidence 3445555556777899999999999999999987655443333
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.27 E-value=9.1e-05 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-|++.|+||+||||++..+.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.26 E-value=7.3e-05 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|++|||||||++.+.+-.
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999998744
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.26 E-value=8.7e-05 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+++.|+|-||+||||||.+..|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999999964
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.26 E-value=6.9e-05 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
+|.++|++||||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888843
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.25 E-value=7.5e-05 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++|+|++|||||||++.+.+-.
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhccc
Confidence 34579999999999999999998743
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.24 E-value=7.3e-05 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=-++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCcchhhHhccCCC
Confidence 34468999999999999999988754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.24 E-value=0.00089 Score=43.13 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=41.2
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCC
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g 70 (181)
+.+.+.+...+...-|++-|+-|+|||||++.++..--. . ..||-.. ...+...+..+.-+|.--
T Consensus 21 la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~~i~H~DlYR 88 (158)
T d1htwa_ 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGKMIYHFDLYR 88 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTEEEEEEECTT
T ss_pred HHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeeccCCceEEEEEEec
Confidence 334443333345667889999999999999999754322 1 2444433 334555667777777764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=7.2e-05 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|+++|+|||||||++..|...
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999653
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.23 E-value=7.5e-05 Score=50.30 Aligned_cols=22 Identities=55% Similarity=0.572 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-|+++|.|||||||+.++|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999974
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.23 E-value=7.4e-05 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-|+++||+||||||+++.|...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3679999999999999999754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=7.4e-05 Score=49.76 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|+||+||||+||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.23 E-value=7.9e-05 Score=50.34 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
..=.++++|+.|+|||||++.+.+-..
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~ 52 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTYLK 52 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcccc
Confidence 344678999999999999999988653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=9e-05 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|++|||||||++.+.+-.
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhccc
Confidence 34578999999999999999998754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.21 E-value=8.1e-05 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
=|++.|++||||||+++.|...
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3667799999999999999763
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=8.3e-05 Score=48.35 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-=+++.|++||||||+.+.|..
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=8.9e-05 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=-++++|+.|||||||++.+.+-.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34467899999999999999997643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.14 E-value=0.00012 Score=48.93 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-|.++|+|||||||++..|...
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999653
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.14 E-value=0.00011 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++|+|+.|+|||||++.+.+-.
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44578999999999999999998754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00011 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+++||+|+||+||+++|...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00011 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=-++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34467899999999999999998854
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.12 E-value=0.0001 Score=51.59 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=+++|+|++|||||||++.+.+-.
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 44589999999999999999997643
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.12 E-value=0.00012 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
-++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 45799999999999999998855
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.12 E-value=0.00012 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|+.|||||||++.+.+-.
T Consensus 32 Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 32 GEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467999999999999999998754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=6.2e-05 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|.++|.+||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999964
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.10 E-value=0.00018 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.||||+|||++++.+.+
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHhh
Confidence 34699999999999999999975
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.10 E-value=0.00013 Score=48.78 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|+||+|||||||++.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.08 E-value=0.00014 Score=50.43 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
..=.++++|+.|||||||++.+.+-..
T Consensus 28 ~Ge~~~liG~sGaGKSTll~~i~gl~~ 54 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 344689999999999999999987653
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00014 Score=49.24 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-|+++||+|||||||+++|+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 34789999999999999999764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.05 E-value=0.00015 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=-++++|+.|+|||||++.+.+-..
T Consensus 32 Gei~~liGpnGaGKSTl~~~i~Gl~~ 57 (240)
T d1ji0a_ 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34578999999999999999988653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.04 E-value=9.5e-05 Score=50.86 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=-++++|+.|||||||++.+.+-..
T Consensus 26 Ge~~~liGpsGaGKSTll~~l~Gl~~ 51 (229)
T d3d31a2 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (229)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 33578999999999999999988653
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.03 E-value=0.00017 Score=47.16 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030193 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~ 38 (181)
.|.++|++||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47789999999999999885
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00021 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.+-|+|.|++|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999884
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.00022 Score=49.36 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=-++++|+.|+|||||++.+.+-..
T Consensus 28 Gei~glvG~nGaGKSTLl~~l~G~~~ 53 (238)
T d1vpla_ 28 GEIFGLIGPNGAGKTTTLRIISTLIK 53 (238)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999988653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.98 E-value=0.0002 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
....+++.||||+||||+++.+.+.
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.96 E-value=0.00036 Score=47.70 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+...+++.||+|+|||+++..+...
T Consensus 43 ~~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 43 GSMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34457999999999999999998764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.96 E-value=0.0002 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=-++++|+.|||||||++.+.+-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 34468999999999999999998754
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.00013 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..=-++++|+.|+|||||++.+.+-
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3446889999999999999999874
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.92 E-value=0.00022 Score=49.86 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
=-++++|+.|+|||||++.+.+-.
T Consensus 31 ei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 31 DVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHCCC
Confidence 357899999999999999998864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.92 E-value=0.00022 Score=46.99 Aligned_cols=20 Identities=40% Similarity=0.788 Sum_probs=17.0
Q ss_pred eE-EEEcCCCCChHHHHhhhh
Q 030193 19 RI-LMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i-~v~G~~~~GKSsli~~l~ 38 (181)
|| +|.|.+||||||+++.|.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 45 467999999999999885
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.00021 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.||||+||||+++.+...
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHhc
Confidence 457999999999999999998753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.91 E-value=0.0002 Score=51.88 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
+.+.+|+|.|++||||||+++++++.-
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhc
Confidence 456689999999999999999998643
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.87 E-value=0.00052 Score=47.64 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-.+++.|++|+|||++++.+...
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999998753
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.86 E-value=0.00013 Score=50.64 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
+.=.++++|++|||||||++.+.+-..
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~ 56 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCcC
Confidence 345789999999999999999988653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.86 E-value=0.00034 Score=46.56 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+.+-|+|-|..||||||+++.|...
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 356678999999999999999999753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.84 E-value=0.00049 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..-.|+|.|++|+|||||+.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 445688999999999999998864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.84 E-value=0.00033 Score=46.49 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+++-|+|.|.+||||||+++.|...
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 4677899999999999999988653
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0004 Score=49.85 Aligned_cols=28 Identities=25% Similarity=0.142 Sum_probs=22.6
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhh
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.......+-|+|.|++||||||+.+.|.
T Consensus 74 ~~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 74 TNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3334667899999999999999988874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00032 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
=|+|.|||||||+|+...|...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999999653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00066 Score=46.37 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+...+++.||+|+||||++..+...
T Consensus 32 ~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 32 NLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.75 E-value=0.00068 Score=46.11 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=21.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+...+++.||+|+||||+++.+...
T Consensus 34 ~~~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 34 GNMPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHH
Confidence 34457999999999999999888643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.72 E-value=0.00036 Score=50.14 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.++++||||+|||.|++++...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 356899999999999999999753
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.71 E-value=0.00056 Score=50.67 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcc
Q 030193 6 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~ 43 (181)
..+..-+.++.+-+++++|+||+|||+++..|...-..
T Consensus 32 ~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~ 69 (387)
T d1qvra2 32 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 69 (387)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHh
Confidence 34445555677888999999999999999877654433
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.67 E-value=0.00089 Score=45.24 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=24.4
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+....+..-|.+.|.||||||||.+.|...
T Consensus 18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334467778999999999999999998643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.67 E-value=0.00079 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.|++.||+|+|||++++++.+.
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHH
Confidence 345999999999999999999863
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.67 E-value=0.00055 Score=47.30 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..+++.||+|+||||++..+.+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.001 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+...+++.|++|+||||++..+.+.
T Consensus 34 ~~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 34 KLPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCChhHHHHHHHHH
Confidence 3446999999999999999999764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.55 E-value=0.001 Score=46.41 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...|++.||||+|||++++++.+.
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHHH
Confidence 446999999999999999999764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.00089 Score=46.12 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...++++.|++|+||||++..+...
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3446999999999999999998764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00084 Score=46.87 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+++.||||+|||++++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 4599999999999999999975
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.30 E-value=0.00089 Score=50.46 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+-||+++||+|||||-|+++|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999999954
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.0022 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.9
Q ss_pred cccceEEEEcCCCCChHHHHhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l 37 (181)
...+=|+|.|++|||||||...+
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l 47 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQI 47 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHH
Confidence 45678899999999999998766
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.27 E-value=0.0018 Score=44.96 Aligned_cols=20 Identities=25% Similarity=0.059 Sum_probs=17.2
Q ss_pred EEEcCCCCChHHHHhhhhcC
Q 030193 21 LMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 21 ~v~G~~~~GKSsli~~l~~~ 40 (181)
++.|+||+|||++++.+...
T Consensus 50 ~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHH
T ss_pred EeECCCCCCHHHHHHHHHHH
Confidence 45699999999999999764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.22 E-value=0.0014 Score=43.81 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
-|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.19 E-value=0.0016 Score=45.56 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...|++.|++|+|||++++++.+.-
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 4469999999999999999997644
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0017 Score=43.64 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+-|+|.|..||||||+++.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 45889999999999999988543
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0016 Score=44.35 Aligned_cols=23 Identities=39% Similarity=0.330 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..|+|-|+.||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0016 Score=43.39 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=20.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--+.|.|+||+|||+|+..+..
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344568999999999999988864
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.06 E-value=0.0025 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+-.+++.||||+|||+++..+.+
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999998864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.05 E-value=0.0017 Score=43.60 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+-|+|.|..||||||+++.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998854
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.04 E-value=0.0018 Score=42.42 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...-|++.|++|+||||++-.|....
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 45678999999999999999987654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.03 E-value=0.0011 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=16.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhh
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
+.+=|+|.|++||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 34459999999999999999874
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0017 Score=43.56 Aligned_cols=21 Identities=38% Similarity=0.426 Sum_probs=18.2
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
=|+|-|..||||||+++.|..
T Consensus 4 fIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378889999999999998864
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.98 E-value=0.0021 Score=42.15 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...-|++.|++|+||||++..|....
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 45678999999999999999987654
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.90 E-value=0.0042 Score=43.62 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|+|.|.+|+|||||+..+.+.
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3446789999999999999988654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.0023 Score=43.49 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=24.5
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
|..++.... ...--+.|.|+||+|||+|+..+...
T Consensus 23 LD~ll~GGi-~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 23 LDTLLGGGV-ETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp HHHHHTSSE-ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred HHhhhCCCC-cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 334444433 33456789999999999999888643
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0042 Score=41.65 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=23.2
Q ss_pred HHHHhhhccccce-EEEEcCCCCChHHHHhhhhc
Q 030193 7 KLFSKLFAKKEMR-ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 7 ~~~~~~~~~~~~~-i~v~G~~~~GKSsli~~l~~ 39 (181)
++.+.....+... +++.|++|+||||++..+..
T Consensus 13 ~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 3333333334344 89999999999999998765
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0035 Score=42.19 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=18.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..=|+|-|..||||||+++.|..
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 34578889999999998887744
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.70 E-value=0.0015 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
=.+++.|+||+|||++++++..
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHH
Confidence 3799999999999999998854
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.67 E-value=0.0032 Score=40.94 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
-...-|++.|++|+||||+.-.+....
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 346679999999999999998887654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0044 Score=44.40 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.++++||+|+|||.|+..+..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 588999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.57 E-value=0.0034 Score=42.96 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++|.|+||+|||+|+-.++.
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34568999999999999888864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.41 E-value=0.0041 Score=42.39 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..--++|.|+||+|||+|+..+...
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3455689999999999999888643
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0042 Score=42.36 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
-|+|-|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999975
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.38 E-value=0.0034 Score=45.36 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...++|.|-|.-|+||||+++.|...
T Consensus 3 m~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 3 MGVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.0078 Score=41.14 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030193 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~ 39 (181)
+++-|++|+|||+++..+..
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999999998754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.32 E-value=0.0031 Score=44.61 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=15.8
Q ss_pred EEEcCCCCChHHHHhhh
Q 030193 21 LMVGLDAAGKTTILYKL 37 (181)
Q Consensus 21 ~v~G~~~~GKSsli~~l 37 (181)
+++|+.||||||++.++
T Consensus 28 vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEECCTTTCSTHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 68999999999999887
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.30 E-value=0.0057 Score=44.75 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.-+++++||+|||||-++++|..
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 456799999999999999998854
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.29 E-value=0.006 Score=40.66 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=21.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++-.+++.||+++|||.|+.++.+-
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 34567889999999999999888653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.21 E-value=0.0052 Score=41.67 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++|.|++|+|||+|+..+..
T Consensus 34 G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 34 QSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 44568999999999999888864
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0011 Score=43.65 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=16.1
Q ss_pred EEEcCCCCChHHHHhhhh
Q 030193 21 LMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 21 ~v~G~~~~GKSsli~~l~ 38 (181)
+|+|+.|||||||+.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999984
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0056 Score=41.73 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++|.|+||+|||+|+..++.
T Consensus 37 G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 37 MAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999988864
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.09 E-value=0.006 Score=43.78 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.4
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
+++.|+||+|||.+++.+.+.
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 345799999999999999753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.04 E-value=0.0057 Score=45.35 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=23.2
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+......=-|+|.|+.||||||.+..++..
T Consensus 152 ~l~~~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 152 RLIKRPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp HHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhhhhceEEEEcCCCCCccHHHHHHhhh
Confidence 333344456899999999999999999763
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=94.91 E-value=0.0077 Score=43.44 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..++|.|=|.-|+||||+++.|...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred ceEEEEEECCccCCHHHHHHHHHHH
Confidence 4679999999999999999998753
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.87 E-value=0.0073 Score=41.16 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
-|++.|..||||||+++.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999965
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.0066 Score=44.63 Aligned_cols=21 Identities=14% Similarity=0.488 Sum_probs=17.7
Q ss_pred ccceEEEEcCCCCChHHHHhhh
Q 030193 16 KEMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l 37 (181)
..++ +|+|+.|+|||+++.++
T Consensus 25 ~~l~-~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 25 SNFT-SIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp CSEE-EEECSTTSSHHHHHHHH
T ss_pred CCEE-EEECCCCCCHHHHHHHH
Confidence 4455 48899999999999987
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0079 Score=40.47 Aligned_cols=22 Identities=45% Similarity=0.425 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.=|++-|..||||||+++.|..
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4488999999999999988853
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.65 E-value=0.0091 Score=40.12 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=18.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhh
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
..--+.|.|++|+|||+|+..++
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 34556888999999999987664
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.58 E-value=0.0081 Score=43.23 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+|.|-|.-|+||||+++.|..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 46799999999999999999964
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.54 E-value=0.01 Score=41.29 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=17.0
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030193 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~ 38 (181)
-++|.|+||+|||+|+..+.
T Consensus 37 l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46799999999999977775
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.36 E-value=0.011 Score=39.71 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~ 41 (181)
+.+.|++|+|||-|++++.+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8899999999999999987643
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.35 E-value=0.017 Score=40.27 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+-.+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456778889999999999998865
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.19 E-value=0.024 Score=38.96 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHhhhc--cccceEEEEcCCCCChHHHHhhhhc
Q 030193 5 FTKLFSKLFA--KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 5 ~~~~~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+.+++.+... .....|+|.|++|+||+.+.+.+-.
T Consensus 9 ~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 9 MKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp HHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 3444444333 5567899999999999999888853
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.13 E-value=0.0088 Score=41.99 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.6
Q ss_pred eEEEEcCCCCChHHHH
Q 030193 19 RILMVGLDAAGKTTIL 34 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli 34 (181)
.++|+|+||+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4789999999999763
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.01 E-value=0.11 Score=36.00 Aligned_cols=85 Identities=15% Similarity=0.077 Sum_probs=45.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
.--..+.|++++|||+|+-.+...... .+..+.++|+.+.-.......... +.+-+ +++.+.
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~q~---------------~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~i-l~~~~~- 121 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDPDYAKKLGV-DTDSL-LVSQPD- 121 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHHHH---------------TTCEEEEEESSCCCCHHHHHHHTC-CGGGC-EEECCS-
T ss_pred ceeEEEecCCCcHHHHHHHHHHHHHhc---------------CCCEEEEEECCccCCHHHHHHhCC-CHHHe-EEecCC-
Confidence 344579999999999998777632110 133467789998543322222222 23322 344443
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 97 RDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+.+...+....+... +.+.++|+
T Consensus 122 --~~E~~~~~~~~l~~~----~~~~liIi 144 (269)
T d1mo6a1 122 --TGEQALEIADMLIRS----GALDIVVI 144 (269)
T ss_dssp --SHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred --CHHHHHHHHHHHHhc----CCCCEEEE
Confidence 345555545454442 44555554
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=93.99 E-value=0.012 Score=41.63 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.8
Q ss_pred eEEEEcCCCCChHHHH
Q 030193 19 RILMVGLDAAGKTTIL 34 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli 34 (181)
.++|.|.+|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4889999999999764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.84 E-value=0.021 Score=40.78 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.++++||+|+|||.+++.+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 567889999999999988864
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.79 E-value=0.081 Score=36.70 Aligned_cols=76 Identities=16% Similarity=0.066 Sum_probs=41.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
..-..+.|++++|||+|+..+.....- .+..+.++|+.+.-+.......-+ +.|-++ ++.+
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~~aqk---------------~g~~v~yiDtE~~~~~~~a~~~Gv-d~d~i~-~~~~-- 117 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVAQAQK---------------AGGTCAFIDAEHALDPVYARALGV-NTDELL-VSQP-- 117 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-EECC--
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHh---------------CCCEEEEEECCccCCHHHHHHhCC-CchhEE-EEcC--
Confidence 335579999999999999877653211 123456788887543332222222 233332 3343
Q ss_pred cccHHHHHHHHHHHhc
Q 030193 97 RDRVVEARDELHRMLN 112 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~ 112 (181)
...+...+.+..+..
T Consensus 118 -~~~E~~~~~~~~l~~ 132 (268)
T d1xp8a1 118 -DNGEQALEIMELLVR 132 (268)
T ss_dssp -SSHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHh
Confidence 344555555555554
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.018 Score=42.63 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...++|+|.+|+|||+++..++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHHH
Confidence 44699999999999999877754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.017 Score=39.90 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.8
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030193 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~ 38 (181)
-.+|.|++|+|||+|+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 35699999999999987764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.02 Score=40.28 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=21.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-+.=|++|+|++|+|||+|+..+...
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 34558999999999999998888653
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.42 E-value=0.027 Score=34.18 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=22.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
++.+.|.+-|..|+|||+|.+.|..
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHH
Confidence 6789999999999999999999853
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.28 E-value=0.06 Score=35.55 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....+++-|++|+||++++..+.+
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999988875
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=0.042 Score=38.06 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=18.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--+.+.|++++|||+|+-.+..
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 34457999999999999877753
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.048 Score=39.58 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCChHHHHhhh
Q 030193 18 MRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l 37 (181)
--.+|.|+||+|||+++..+
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHH
Confidence 35678999999999987543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.27 E-value=0.062 Score=37.44 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+.=|++++|++|+|||+|+..+..+
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 3448999999999999998877543
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.18 E-value=0.29 Score=32.38 Aligned_cols=71 Identities=7% Similarity=0.062 Sum_probs=46.2
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCHh
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAA 137 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~~ 137 (181)
.+.+.++|+++..... ....+..+|.++++.... ..++....+..... .+ .+.|+. +|+||.|..+.....
T Consensus 111 ~~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~-~~---~~~~~~giv~N~~~~~~~~~~~ 182 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQLD--AMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVL-KK---AGLAILGFVLNRYGRSDRDIPP 182 (237)
T ss_dssp GCSEEEEECCSSSSHH--HHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHH-HH---TTCEEEEEEEEEETSCTTCCCH
T ss_pred cCCEEEEccccccccc--chhhhhhhhccccccccc-ceecchhhHHHHHH-hh---hhhhhhhhhhcccccccchhhh
Confidence 4789999999865332 333456799999999885 45555555544333 32 456765 899999876544333
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=89.79 E-value=0.1 Score=35.81 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=44.8
Q ss_pred CEEEEEEEcCCCCCcccc-cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-H
Q 030193 60 NISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A 136 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~ 136 (181)
.+.+.++|+|+.-..... .......+|.++++.++. ..++.........+.......+.+ .-+|.|+.+.....+ .
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~ 193 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL 193 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchh
Confidence 467999999975432222 222224578888888774 555554443322221111112333 347889988765322 2
Q ss_pred hHHHhhhCCC
Q 030193 137 AEITDKLGLH 146 (181)
Q Consensus 137 ~~~~~~~~~~ 146 (181)
+++.+.++.+
T Consensus 194 ~~~~~~~~~~ 203 (269)
T d1cp2a_ 194 DAFAKELGSQ 203 (269)
T ss_dssp HHHHHHHTCC
T ss_pred hhhHhhcCCe
Confidence 3344445443
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=89.70 E-value=0.11 Score=33.67 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|.|...||||.+...+...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 689999999999999998754
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=88.76 E-value=0.13 Score=31.91 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.0
Q ss_pred EEEcCCCCChHH-HHhhh
Q 030193 21 LMVGLDAAGKTT-ILYKL 37 (181)
Q Consensus 21 ~v~G~~~~GKSs-li~~l 37 (181)
+++||-.||||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 578999999999 56555
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.75 E-value=0.13 Score=35.57 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=24.5
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhh
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l 37 (181)
+..+..+.......+-++.|+.|||||-+.-..
T Consensus 92 i~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 92 HQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp HHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred HHHHHHHhhccCcceeeeeccccccccHHHHHH
Confidence 445566666677788899999999999764443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=88.23 E-value=0.13 Score=31.28 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=15.8
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030193 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~ 38 (181)
..++.++.|+|||.++-.+.
T Consensus 10 ~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 34679999999998876554
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=88.15 E-value=0.16 Score=33.23 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=16.7
Q ss_pred ceEEEEcCC-CCChHHHHhhh
Q 030193 18 MRILMVGLD-AAGKTTILYKL 37 (181)
Q Consensus 18 ~~i~v~G~~-~~GKSsli~~l 37 (181)
.|+.|.|.. ||||||+.-.|
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~L 22 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCAL 22 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHH
Confidence 378899995 99999997666
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=88.02 E-value=0.31 Score=33.33 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=18.0
Q ss_pred hccccceEEEE-cCCCCChHHHHhhh
Q 030193 13 FAKKEMRILMV-GLDAAGKTTILYKL 37 (181)
Q Consensus 13 ~~~~~~~i~v~-G~~~~GKSsli~~l 37 (181)
+.+...+|.++ |..|+||||+.-.|
T Consensus 15 ~~~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 15 IARNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp HHTTSCEEEEEECSTTSSHHHHHHHH
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHH
Confidence 33556666654 99999999986555
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.67 E-value=0.13 Score=35.97 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=20.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-+.=|++++|++|+|||+|+..+..+
T Consensus 66 g~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 66 GRGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHh
Confidence 34558999999999999998766543
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=86.93 E-value=0.41 Score=32.25 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHhhhccccceEEEEcCCCCChHHHHhhh
Q 030193 6 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l 37 (181)
..+.+..........++.|+.|||||-+.-+.
T Consensus 65 ~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a 96 (233)
T d2eyqa3 65 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 96 (233)
T ss_dssp HHHHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred HHHHHHHhccCccCeEEEcCCCCCcHHHHHHH
Confidence 34455555566778899999999999775444
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.15 E-value=0.22 Score=34.32 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.2
Q ss_pred eEEEEcCCCCChHHHHhhh
Q 030193 19 RILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l 37 (181)
-|.+.|..|+||||+.-.+
T Consensus 10 ~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCcChHHHHHHHH
Confidence 3458899999999986665
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.82 E-value=0.16 Score=35.36 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=19.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+.=|++|+|++|+|||+|+..+..
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHH
T ss_pred CCceEeeccCCCCChHHHHHHHHh
Confidence 344789999999999999866543
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.04 E-value=0.2 Score=35.39 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=12.9
Q ss_pred EEEcCCCCChHHHH
Q 030193 21 LMVGLDAAGKTTIL 34 (181)
Q Consensus 21 ~v~G~~~~GKSsli 34 (181)
+++|.+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (313)
T d2olra1 18 VFFGLSGTGKTTLS 31 (313)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 69999999999985
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.89 E-value=0.28 Score=33.08 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030193 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~ 38 (181)
++|-|+..+|||++++.+.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 5789999999999999884
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=84.30 E-value=0.18 Score=30.22 Aligned_cols=19 Identities=37% Similarity=0.275 Sum_probs=15.0
Q ss_pred cccceEEEEcCCCCChHHH
Q 030193 15 KKEMRILMVGLDAAGKTTI 33 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsl 33 (181)
++.-++++.+++|+|||..
T Consensus 5 ~~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp STTCEEEECCCTTSSTTTT
T ss_pred HcCCcEEEEcCCCCChhHH
Confidence 4466778889999999943
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=84.29 E-value=0.32 Score=33.58 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=42.7
Q ss_pred CEEEEEEEcCCCCCcccccccc-cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCCCCCC-CH
Q 030193 60 NISFTVWDVGGQDKIRPLWRHY-FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAM-NA 136 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D~~~~~-~~ 136 (181)
.+.+.++|+|+........... ...++.++.+.... ..++....+....+.......+.++ .+|.|+.+..... ..
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 196 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELI 196 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHH
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHH
Confidence 4778999998764332222221 23467777776654 4444444443332222111234444 4788988743321 13
Q ss_pred hHHHhhhCCC
Q 030193 137 AEITDKLGLH 146 (181)
Q Consensus 137 ~~~~~~~~~~ 146 (181)
+++.+.++..
T Consensus 197 ~~~~~~~g~~ 206 (289)
T d2afhe1 197 IALANKLGTQ 206 (289)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHcCCe
Confidence 3444444443
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.26 E-value=0.21 Score=35.32 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.8
Q ss_pred EEEEcCCCCChHHHHh
Q 030193 20 ILMVGLDAAGKTTILY 35 (181)
Q Consensus 20 i~v~G~~~~GKSsli~ 35 (181)
-+++|.+|+|||||-.
T Consensus 17 alffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLST 32 (318)
T ss_dssp EEEEECTTSCHHHHTC
T ss_pred EEEEccCCCCcccccc
Confidence 3799999999999853
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.94 E-value=0.32 Score=32.56 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.5
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030193 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~ 39 (181)
+++-|+..+|||++++.+.-
T Consensus 38 ~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp EEEESCSSSSHHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhHH
Confidence 67999999999999998843
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.17 E-value=0.26 Score=34.91 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.5
Q ss_pred EEEEcCCCCChHHHH
Q 030193 20 ILMVGLDAAGKTTIL 34 (181)
Q Consensus 20 i~v~G~~~~GKSsli 34 (181)
-+++|.+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 369999999999996
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.93 E-value=0.38 Score=31.00 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=13.4
Q ss_pred eEEEEcCCCCChHHHH
Q 030193 19 RILMVGLDAAGKTTIL 34 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli 34 (181)
++++++|.|+|||.+.
T Consensus 25 n~lv~~pTGsGKT~i~ 40 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIA 40 (200)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CeEEEeCCCCcHHHHH
Confidence 5789999999999643
|