Citrus Sinensis ID: 030229

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKPYFQLLSTRQSPWIPISNHFHSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNEKKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEEKKISMS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGFGVLRSIIRPlsrtlisrsptstssttpffssssllkpYFQLlstrqspwipisnhfhsltdtrfpkrrpvekprrkraslrppgpyawvqytpgqpispnnpnqgsvkrrnEKKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEEKKISMS
Flexible Loop (DISEMBL)
mgfgvlrsIIRPlsrtlisrsptstssttpffssssLLKPYFQLLSTRQSPWIPIsnhfhsltdtrfpkrrpvekprrkraslrppgpYAWVQytpgqpispnnpnqgsvkrrnekkRMRQRRAFIlseakkrkaqlqeanrkkraqrVERKMAAVARERAWAERLAElqrleeekkisms
Low Complexity Region (SEG)
MGFGVLRSIIRPlsrtlisrsptstssttpffssssllKPYFQLLSTRQSPWIPISNHFHSLTDTrfpkrrpvekprrkrASLRPPGPYAWVQYTPGQPISPNNPNQGSVkrrnekkrmrqrrAFILSEAKKRKAQLQEANRKKRAQRVERKMaavarerawaerlaelqrleeeKKISMS
Disordered region (IsUnstruct)
********II**************************LLKPYFQLLSTRQSPWIPISNHFHSL***************************AWV*****************************************************************************************
Disordered Region (DISOPRED)
****VLRSIIRPLSRTLISRS*****STTPFFSSSSLLKPYFQLLSTRQSPWIPISNHFHSLTDTR*********************PYAWVQYTPG***********************************************************ARERAWAERLAE*************
Disordered Region (DISEMBL)
MGFGVLRSIIRPLSRTLIS*************SSSSLLKPYFQLLSTRQSPWIPISNHFHSLTDTRFP**************LRPPGPYAWVQYTPGQPISPNN****************QRRAFILSEAK***************************ERAWAERLAELQRLE********
Disordered Region (DISPRO)
*GFGVLRSIIRPLSRTLISRS*T**SSTTP*FSSSSLLKPYFQLLSTRQSPWIPISNHFHSLTDTRFPKRR*********ASLRPPGPYAWVQYTPGQPISP*******************RRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERL***QRLEEEKK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKPYFQLLSTRQSPWIPISNHFHSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNEKKRMRQRRAFIxxxxxxxxxxxxxxxxxxxxxxxxRKMAAVARERAWAERLAELQRLEEEKKISMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
225431253	182	PREDICTED: uncharacterized protein LOC10	0.988	0.983	0.717	6e-64
388501038	178	unknown [Lotus japonicus]	0.961	0.977	0.729	3e-63
449450127	182	PREDICTED: uncharacterized protein LOC10	0.977	0.972	0.728	4e-63
224097079	186	predicted protein [Populus trichocarpa]	0.966	0.940	0.692	2e-62
351727617	178	uncharacterized protein LOC100527226 [Gl	0.961	0.977	0.718	3e-62
18409234	188	uncharacterized protein [Arabidopsis tha	0.994	0.957	0.664	3e-61
21553452	188	unknown [Arabidopsis thaliana]	0.994	0.957	0.664	3e-61
297819802	188	hypothetical protein ARALYDRAFT_485453 [	0.994	0.957	0.648	8e-60
351722125	178	uncharacterized protein LOC100305569 [Gl	0.955	0.971	0.704	2e-59
388501894	175	unknown [Lotus japonicus]	0.928	0.96	0.672	7e-58

>gi|225431253|ref|XP_002274615.1| PREDICTED: uncharacterized protein LOC100243711 [Vitis vinifera] gi|147794656|emb|CAN73508.1| hypothetical protein VITISV_007909 [Vitis vinifera] gi|297735072|emb|CBI17434.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 132/184 (71%), Positives = 149/184 (80%), Gaps = 5/184 (2%)

Query: 1   MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKPYFQLLSTRQS---PWIPISN 57
           MG G LRSIIRPLSRTL++R  TST  TT F +SS   +P F+ +S        W+P++N
Sbjct: 1   MGLGALRSIIRPLSRTLVTR--TSTLYTTSFGASSPSPRPDFRFVSGSLYWLPRWVPVAN 58

Query: 58  HFHSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNEKK 117
           HFHSLTDTRFPKRRP +KPRRKRASLRPPGPYAWVQY PG+ I PN PN+GSVK R EKK
Sbjct: 59  HFHSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVQYVPGERILPNRPNEGSVKGRKEKK 118

Query: 118 RMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEEKK 177
           RMR RRAFILSEAKKRK QLQEA RKK  + VERKMAAVARERAWA+RLAELQ+LEEEKK
Sbjct: 119 RMRLRRAFILSEAKKRKTQLQEAKRKKNIKGVERKMAAVARERAWAQRLAELQQLEEEKK 178

Query: 178 ISMS 181
            S++
Sbjct: 179 KSVA 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501038|gb|AFK38585.1| unknown [Lotus japonicus]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 135/185 (72%), Positives = 151/185 (81%), Gaps = 11/185 (5%)

Query: 1   MGF-GVLRSIIRPLSRTLISRSPTSTSSTTPFFS--SSSLLKPYFQLLSTRQSPWI-PIS 56
           MGF G LR+IIRPLS +  SR+ TS  ST P  +  S+SL  P       +Q  W+ P+ 
Sbjct: 1   MGFIGALRNIIRPLSLS-TSRTLTSQISTNPTIALFSTSLASP------CKQPQWLFPLR 53

Query: 57  NHFHSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNEK 116
           NHFHSLTDTRFPKRRP +KPRRKRASLRPPGPYAWVQYTPG+PI PN PN+GSVKRRNEK
Sbjct: 54  NHFHSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNKPNEGSVKRRNEK 113

Query: 117 KRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEEK 176
           KRMRQ RAFIL+E KKRKAQ+QEANRKK  +RVERKMAAVARERAWAERLAELQRLE+EK
Sbjct: 114 KRMRQHRAFILAERKKRKAQMQEANRKKSIKRVERKMAAVARERAWAERLAELQRLEKEK 173

Query: 177 KISMS 181
           K SM+
Sbjct: 174 KNSMA 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450127|ref|XP_004142815.1| PREDICTED: uncharacterized protein LOC101208398 [Cucumis sativus] gi|449504261|ref|XP_004162297.1| PREDICTED: uncharacterized protein LOC101227898 [Cucumis sativus]

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 134/184 (72%), Positives = 146/184 (79%), Gaps = 7/184 (3%)

Query: 1   MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKPYFQLLSTRQ----SPWIPIS 56
           MG G+LRSIIRPL+R  ISRS    SS T F S+ +  KP F L ST       PW PI+
Sbjct: 1   MGLGILRSIIRPLTR--ISRS-HPFSSPTAFPSAFTFSKPGFHLPSTGSVRTGDPWFPIA 57

Query: 57  NHFHSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNEK 116
           NHFHSLT+TR PKRRP  KPRRKRASLRPPGPYAWV YTPGQPI PN PN+GSVKRRNEK
Sbjct: 58  NHFHSLTETRLPKRRPSYKPRRKRASLRPPGPYAWVPYTPGQPILPNQPNEGSVKRRNEK 117

Query: 117 KRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEEK 176
           KR+R  RAFI+SE KKRKAQ+QEAN+KK   RVERKMAAVARERAWA RLAELQ+LEEEK
Sbjct: 118 KRIRLHRAFIMSERKKRKAQVQEANKKKLVMRVERKMAAVARERAWAVRLAELQKLEEEK 177

Query: 177 KISM 180
           K SM
Sbjct: 178 KKSM 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097079|ref|XP_002310829.1| predicted protein [Populus trichocarpa] gi|222853732|gb|EEE91279.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/192 (69%), Positives = 147/192 (76%), Gaps = 17/192 (8%)

Query: 1   MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKPYFQLL--STRQSPWIPISNH 58
           MGFG LR+ IRPLSRTL + +   TSSTTPF +S    KP F+L       SPW  +  H
Sbjct: 1   MGFGALRNAIRPLSRTLTTHA--RTSSTTPFLAS----KPEFRLSLSGGGHSPWTQMIRH 54

Query: 59  F---------HSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGS 109
           F           LT TRFPKRRPV+KPRRKRASL+PPGPYAWVQY PGQPI PNNPN GS
Sbjct: 55  FSFLSEANPFDRLTSTRFPKRRPVDKPRRKRASLKPPGPYAWVQYVPGQPIKPNNPNVGS 114

Query: 110 VKRRNEKKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAEL 169
           VKRRNEKKR+RQR+ FIL+E KKRKAQLQEANRKKR  RVERKMAAVAR+R WA++LAEL
Sbjct: 115 VKRRNEKKRIRQRKEFILAEKKKRKAQLQEANRKKRIARVERKMAAVARDREWAQKLAEL 174

Query: 170 QRLEEEKKISMS 181
           QRLEEEKK SMS
Sbjct: 175 QRLEEEKKKSMS 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727617|ref|NP_001236655.1| uncharacterized protein LOC100527226 [Glycine max] gi|255631824|gb|ACU16279.1| unknown [Glycine max]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 149/185 (80%), Gaps = 11/185 (5%)

Query: 1   MGF-GVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKPYFQLL-STRQSP-WI-PIS 56
           MGF G LR+I+RPLS         S+ + TP  S+++ + P+     S  ++P W+ P+ 
Sbjct: 1   MGFAGALRNIVRPLSVA-------SSRALTPRISTNASMAPFCPAFPSPCKTPQWLHPLW 53

Query: 57  NHFHSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNEK 116
           NHFHSLTDTRFPKRRP EKPRRKRASLRP GPYAWVQYTPGQPI PN PN+GSVKRRNEK
Sbjct: 54  NHFHSLTDTRFPKRRPSEKPRRKRASLRPSGPYAWVQYTPGQPILPNKPNEGSVKRRNEK 113

Query: 117 KRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEEK 176
           KRMRQRRAFIL+E KKRKAQLQEANRKK  QRVERKMAAVARER WAERLAELQRLEEEK
Sbjct: 114 KRMRQRRAFILAEKKKRKAQLQEANRKKNIQRVERKMAAVAREREWAERLAELQRLEEEK 173

Query: 177 KISMS 181
           K SM+
Sbjct: 174 KKSMA 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409234|ref|NP_566942.1| uncharacterized protein [Arabidopsis thaliana] gi|6562253|emb|CAB62623.1| hypothetical protein [Arabidopsis thaliana] gi|98960951|gb|ABF58959.1| At3g51010 [Arabidopsis thaliana] gi|332645216|gb|AEE78737.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/188 (66%), Positives = 151/188 (80%), Gaps = 8/188 (4%)

Query: 1   MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKP-----YFQLLSTRQSPWIPI 55
           MGFG +RSI+RPLSRTL+SR+  + SS  PF ++    KP     +   ++  + PWIP+
Sbjct: 1   MGFGAIRSILRPLSRTLVSRAVVNYSSA-PFNATIPAAKPELCSFFGGSMTHLRLPWIPM 59

Query: 56  SNHFHSL--TDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRR 113
           +NHFHSL  TDTR PKRRP+  P+RKR+ L+PPGPYA+VQYTPGQPIS NNPN+GSVKRR
Sbjct: 60  ANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRR 119

Query: 114 NEKKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLE 173
           N KKR+ QRRAFILSE KKR+A +QEA RKKR ++VERKMAAVAR+RAWAERL ELQ+LE
Sbjct: 120 NAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWAERLIELQQLE 179

Query: 174 EEKKISMS 181
           EEKK SMS
Sbjct: 180 EEKKKSMS 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553452|gb|AAM62545.1| unknown [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/188 (66%), Positives = 151/188 (80%), Gaps = 8/188 (4%)

Query: 1   MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKP-----YFQLLSTRQSPWIPI 55
           MGFG +RSI+RPLSRTL+SR+  + SS  PF ++    KP     +   ++  + PWIP+
Sbjct: 1   MGFGAIRSILRPLSRTLVSRAVVNYSSA-PFNATIPAAKPQLCSFFGGSITHLRLPWIPM 59

Query: 56  SNHFHSL--TDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRR 113
           +NHFHSL  TDTR PKRRP+  P+RKR+ L+PPGPYA+VQYTPGQPIS NNPN+GSVKRR
Sbjct: 60  ANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRR 119

Query: 114 NEKKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLE 173
           N KKR+ QRRAFILSE KKR+A +QEA RKKR ++VERKMAAVAR+RAWAERL ELQ+LE
Sbjct: 120 NAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWAERLIELQQLE 179

Query: 174 EEKKISMS 181
           EEKK SMS
Sbjct: 180 EEKKKSMS 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819802|ref|XP_002877784.1| hypothetical protein ARALYDRAFT_485453 [Arabidopsis lyrata subsp. lyrata] gi|297323622|gb|EFH54043.1| hypothetical protein ARALYDRAFT_485453 [Arabidopsis lyrata subsp. lyrata]

 Score =  234 bits (598), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 148/188 (78%), Gaps = 8/188 (4%)

Query: 1   MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKP-----YFQLLSTRQSPWIPI 55
           MGFG +RSI RPLSRTL+SR+  +  S+ PF +     KP     +   ++  + PWIP+
Sbjct: 1   MGFGAIRSIFRPLSRTLVSRA-VANYSSAPFPAKIPAAKPELCSFFGGSMTHLRLPWIPM 59

Query: 56  SNHFHSL--TDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRR 113
           +NHFHSL  TDTR PKRRP+  P+RKR+ L+PPGPYA+VQYTPGQPIS NNPN+GSVKRR
Sbjct: 60  ANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRR 119

Query: 114 NEKKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLE 173
           N KKR+ QRRAFILSE KKR+A +QEA RKKR ++VERKMAAVAR+RAWAERL EL++ E
Sbjct: 120 NAKKRIAQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWAERLTELKQFE 179

Query: 174 EEKKISMS 181
           EEKK SMS
Sbjct: 180 EEKKNSMS 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722125|ref|NP_001237233.1| uncharacterized protein LOC100305569 [Glycine max] gi|255625943|gb|ACU13316.1| unknown [Glycine max]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/186 (70%), Positives = 144/186 (77%), Gaps = 13/186 (6%)

Query: 1   MG-FGVLRSIIRPLS----RTLISRSPTSTSSTTPFFSSSSLLKPYFQLLSTRQSPWIPI 55
           MG  G LR+I+R LS    R L+ R  T+ S     F+  S  KP  +LL        P+
Sbjct: 1   MGSAGALRNIVRSLSVASSRALLPRISTNASMAPICFALPSPCKPPQRLL--------PL 52

Query: 56  SNHFHSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNE 115
            +HFHSLTDTRFPKRRP E+PRRKRASLRP GPYAWVQYTPG+PI PN PN+GSVKRRNE
Sbjct: 53  WSHFHSLTDTRFPKRRPSERPRRKRASLRPSGPYAWVQYTPGRPILPNKPNEGSVKRRNE 112

Query: 116 KKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEE 175
           KKRMRQRRAFIL+E KKRKAQLQEANRKK  QRVERKMAAVARER WAERLAELQRLEEE
Sbjct: 113 KKRMRQRRAFILAERKKRKAQLQEANRKKNIQRVERKMAAVARERDWAERLAELQRLEEE 172

Query: 176 KKISMS 181
           KK SM+
Sbjct: 173 KKKSMA 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501894|gb|AFK39013.1| unknown [Lotus japonicus]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 123/183 (67%), Positives = 142/183 (77%), Gaps = 15/183 (8%)

Query: 3   FGVLRSIIRPLS----RTLISRSPTSTSSTTPFFSSSSLLKPYFQLLSTRQSPWIPISNH 58
            G LR+I+RPLS    RTL S+  T+ ++T    S   L +  F           P+ NH
Sbjct: 4   IGALRNIVRPLSLSSPRTLPSQICTNPTTTALLESPCKLPQWLF-----------PLRNH 52

Query: 59  FHSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNEKKR 118
           FHSLTDTRFPKRRP +KPRRKRASLRPPGPYAWVQYTPG+PI PN PN+GSVKRRNEKKR
Sbjct: 53  FHSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNKPNEGSVKRRNEKKR 112

Query: 119 MRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEEKKI 178
           +RQ RAF+L+E KKRKAQLQEANRKK  ++VERKMAAVARER WAERLAELQRLE+EKK 
Sbjct: 113 VRQHRAFVLAERKKRKAQLQEANRKKSIKKVERKMAAVAREREWAERLAELQRLEKEKKN 172

Query: 179 SMS 181
           S++
Sbjct: 173 SIA 175

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2080948	188	AT3G51010 "AT3G51010" [Arabido	0.994	0.957	0.409	1.3e-27

TAIR|locus:2080948 AT3G51010 "AT3G51010" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 77/188 (40%), Positives = 91/188 (48%)

Query:     1 MGFGVLRSIIRPXXXXXXXXXXXXXXXXXXXXXXXXXXKP----YFQLLSTR-QSPWIPI 55
             MGFG +RSI+RP                          KP    +F    T  + PWIP+
Sbjct:     1 MGFGAIRSILRPLSRTLVSRAVVNYSSAPFNATIPAA-KPELCSFFGGSMTHLRLPWIPM 59

Query:    56 SNHFHSL--TDTXXXXXXXXXXXXXXXASLRPPGPYAWVQYTPGQPISPNNPNQGSVXXX 113
             +NHFHSL  TDT               + L+PPGPYA+VQYTPGQPIS NNPN+GSV   
Sbjct:    60 ANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRR 119

Query:   114 XXXXXXXXXXAFILSEAKKRKAQLQEANRKKRAQRVERKMXXXXXXXXXXXXXXXXXXXX 173
                       AFILSE KKR+A +QEA RKKR ++VERKM                    
Sbjct:   120 NAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWAERLIELQQLE 179

Query:   174 XXKKISMS 181
               KK SMS
Sbjct:   180 EEKKKSMS 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       105   0.00091  102 3  11 22  0.43    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  502 (53 KB)
  Total size of DFA:  107 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.63u 0.09s 10.72t   Elapsed:  00:00:00
  Total cpu time:  10.63u 0.09s 10.72t   Elapsed:  00:00:00
  Start:  Mon May 20 16:15:38 2013   End:  Mon May 20 16:15:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036864001 SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_83, whole genome shotgun sequence); (182 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PF12083	126	DUF3560: Domain of unknown function (DUF3560); Int	80.93

>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised

Probab=80.93  E-value=12  Score=29.51  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=25.2

Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 030229           94 YTPGQPISPNNPNQGSVKRRNEKKRMRQRRAFILSEAKK  132 (181)
Q Consensus        94 ~~PgepI~~n~pNeGSVk~RnekKRm~qr~aFi~aE~kK  132 (181)
                      .++||||++..-.|+.=++--++--=..+++|-+.++-.
T Consensus        39 ip~GQPIlVGHHSE~R~Rr~~eR~~~~m~kav~~~~kA~   77 (126)
T PF12083_consen   39 IPFGQPILVGHHSEKRHRRYRERIHNRMGKAVEAMDKAE   77 (126)
T ss_pred             cCCCCCeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356999999998888655544443334556666555443

This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 111 KRRNEKKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQ 170
           K   E K + Q+   +  E    + +LQ A  +  A+  E ++   A+++   E L E++
Sbjct: 875 KAEAELKELEQKHTQLCEEKNLLQEKLQ-AETELYAEAEEMRVRLAAKKQELEEILHEME 933

Query: 171 -RLEEEKK 177
            R+EEE++
Sbjct: 934 ARIEEEEE 941

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 111 KRRNEKKRMRQRRAFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQ 170
           +   E + +R+ R       ++++ +LQE +   +    E +  A      W +R +E  
Sbjct: 79  RLTQEPESIRKWR-------EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE-- 129

Query: 171 RLEEEKK 177
           ++E+ K 
Sbjct: 130 QVEKNKI 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	88.16

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=88.16  E-value=1.1  Score=39.55  Aligned_cols=63  Identities=29%  Similarity=0.345  Sum_probs=48.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030229          108 GSVKRRNEKKRMRQRRAFILSEAKKRK-AQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEE  175 (181)
Q Consensus       108 GSVk~RnekKRm~qr~aFi~aE~kKRk-aQ~~~A~rrK~~~rvErKMAAVAReRaWaeRL~eLqqlEee  175 (181)
                      |...|++++|...++++....|.+=.+ ..+-.-.+..-+.-||||+|-.++||.+     |+..+++|
T Consensus       310 ~hL~GKkh~K~~~~~k~iA~~E~~I~~l~~~L~~~~~~Tk~nVERKqa~T~~Ere~-----E~e~l~~e  373 (402)
T 4dgw_A          310 SHLVGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMA-----EMDILTQK  373 (402)
T ss_dssp             TTSSSHHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHH-----HHHHHHHH
T ss_pred             HHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHH
Confidence            567889999999999999999988666 3444455666778899999999998876     44444444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00