Citrus Sinensis ID: 030251

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
MELQMKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKANVLRPIIN
cccccccccHHHHHHHHHHHcccccccEEEEEccccEEEEEEEccccccccccEEEEcccccHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccc
ccHHHHEccHHHHHHHHHHcccccccEEEEEEccccEEEEEEEcccccccccEEEEEccccHccccHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccc
melqmkyvkPLRLFEQMLKRKVSKrgrflgldvgdkyvglsisdpknkiaspLSVLLRKKNTIDLMAEDFRSLISEFnlegfivgypfnrqqnaaDAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELllnpldlhpvEYKTILDKFAAVGILQEYLDNANRKVNLKANVLRPIIN
melqmkyvkplrlFEQMLKRKvskrgrflgldvgdkyvglsisdpknkiasplsvLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYldnanrkvnlkanvlrpiin
MELQMKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKANVLRPIIN
******YVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKANVLR****
***QMKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE****************LDKFAAVGILQEYLD******************
MELQMKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKANVLRPIIN
*ELQMKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKANVLRPIIN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MELQMKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKANVLRPIIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query180 2.2.26 [Sep-21-2011]
B2IEC1165 Putative Holliday junctio yes no 0.783 0.854 0.346 5e-16
Q5NPF1163 Putative Holliday junctio yes no 0.827 0.914 0.325 1e-14
Q1QL26163 Putative Holliday junctio yes no 0.744 0.822 0.314 4e-14
Q3SR28163 Putative Holliday junctio yes no 0.744 0.822 0.321 7e-14
B8EPC5161 Putative Holliday junctio yes no 0.8 0.894 0.326 2e-13
A4J2L0137 Putative Holliday junctio yes no 0.755 0.992 0.321 4e-13
Q0AZP9141 Putative Holliday junctio yes no 0.744 0.950 0.342 5e-13
B0K0Q3139 Putative Holliday junctio yes no 0.755 0.978 0.349 6e-13
Q2IXC6160 Putative Holliday junctio yes no 0.738 0.831 0.316 7e-13
B6IN25188 Putative Holliday junctio yes no 0.794 0.760 0.310 1e-12
>sp|B2IEC1|RUVX_BEII9 Putative Holliday junction resolvase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=Bind_1895 PE=3 SV=1 Back     alignment and function desciption
 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 18  LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 77
           LK  +  R R +G+D+G K +GLS+SD + +IA+PL  + R K T D  AE   +L  +F
Sbjct: 11  LKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKD--AERLLALADQF 68

Query: 78  NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 136
           ++  F++G P N   +A   VQ  + F+  LS    L    + YW+E  ++  V   L  
Sbjct: 69  DVAAFVIGLPLNMDGSAGPRVQATEAFVRSLSG---LTSRPFCYWDERLSTAAVTRDLIA 125

Query: 137 LDLHPVEYKTILDKFAAVGILQEYLDN 163
            D    +   ++DK AA  ILQ  LD 
Sbjct: 126 QDASRAKRAAVVDKLAAAFILQGALDR 152
Could be a nuclease that resolves Holliday junction intermediates in genetic recombination.
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q5NPF1|RUVX_ZYMMO Putative Holliday junction resolvase OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO0785 PE=3 SV=2 Back     alignment and function description
>sp|Q1QL26|RUVX_NITHX Putative Holliday junction resolvase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=Nham_2279 PE=3 SV=2 Back     alignment and function description
>sp|Q3SR28|RUVX_NITWN Putative Holliday junction resolvase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=Nwi_2004 PE=3 SV=1 Back     alignment and function description
>sp|B8EPC5|RUVX_METSB Putative Holliday junction resolvase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=Msil_0742 PE=3 SV=1 Back     alignment and function description
>sp|A4J2L0|RUVX_DESRM Putative Holliday junction resolvase OS=Desulfotomaculum reducens (strain MI-1) GN=Dred_0775 PE=3 SV=1 Back     alignment and function description
>sp|Q0AZP9|RUVX_SYNWW Putative Holliday junction resolvase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=Swol_0470 PE=3 SV=1 Back     alignment and function description
>sp|B0K0Q3|RUVX_THEPX Putative Holliday junction resolvase OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_1491 PE=3 SV=1 Back     alignment and function description
>sp|Q2IXC6|RUVX_RHOP2 Putative Holliday junction resolvase OS=Rhodopseudomonas palustris (strain HaA2) GN=RPB_2429 PE=3 SV=1 Back     alignment and function description
>sp|B6IN25|RUVX_RHOCS Putative Holliday junction resolvase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=RC1_1518 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
224053911170 predicted protein [Populus trichocarpa] 0.933 0.988 0.690 4e-62
297742527224 unnamed protein product [Vitis vinifera] 0.9 0.723 0.716 6e-62
225426409169 PREDICTED: putative Holliday junction re 0.9 0.958 0.716 1e-61
255537457168 conserved hypothetical protein [Ricinus 0.922 0.988 0.684 7e-59
449452328169 PREDICTED: putative Holliday junction re 0.922 0.982 0.668 1e-57
7529715 548 putative protein [Arabidopsis thaliana] 0.922 0.302 0.650 2e-56
297820018 542 hypothetical protein ARALYDRAFT_323835 [ 0.922 0.306 0.644 5e-56
302398811170 GRF domain class transcription factor [M 0.933 0.988 0.705 7e-56
145332817170 Polynucleotidyl transferase/ ribonucleas 0.916 0.970 0.654 2e-55
449452326177 PREDICTED: putative Holliday junction re 0.866 0.881 0.673 3e-55
>gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa] gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/168 (69%), Positives = 140/168 (83%)

Query: 5   MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 64
           MKYV+PL LF ++LK     +GRFLGLDVGDKYVGL++SDP NKIASPLSVLLRKK+ I+
Sbjct: 1   MKYVRPLSLFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIE 60

Query: 65  LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124
           LMA DF+SLISE +L GFIVGYPF+RQ+ A DAV+VKLF+DDL  T KLE +K+ YW+E 
Sbjct: 61  LMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDEC 120

Query: 125 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKA 172
           FTSK VELL+ PLDLHPV  K+I+DKFAAVGILQ YLD  N+K+ L++
Sbjct: 121 FTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQGYLDYVNKKMKLES 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426409|ref|XP_002269986.1| PREDICTED: putative Holliday junction resolvase [Vitis vinifera] Back     alignment and taxonomy information
>gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis] gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449452328|ref|XP_004143911.1| PREDICTED: putative Holliday junction resolvase-like isoform 2 [Cucumis sativus] gi|449495809|ref|XP_004159951.1| PREDICTED: putative Holliday junction resolvase-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp. lyrata] gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|145332817|ref|NP_001078274.1| Polynucleotidyl transferase/ ribonuclease H-like protein [Arabidopsis thaliana] gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana] gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449452326|ref|XP_004143910.1| PREDICTED: putative Holliday junction resolvase-like isoform 1 [Cucumis sativus] gi|449495806|ref|XP_004159950.1| PREDICTED: putative Holliday junction resolvase-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
TAIR|locus:4010713830170 AT3G52905 [Arabidopsis thalian 0.916 0.970 0.654 3e-53
UNIPROTKB|Q71ZG8138 LMOf2365_1521 "Putative Hollid 0.755 0.985 0.321 7.1e-13
UNIPROTKB|Q3AEN4138 CHY_0542 "Putative Holliday ju 0.727 0.949 0.328 3.1e-12
TIGR_CMR|CHY_0542138 CHY_0542 "conserved hypothetic 0.727 0.949 0.328 3.1e-12
UNIPROTKB|Q5LQY2154 SPO2350 "Putative Holliday jun 0.711 0.831 0.291 5.8e-11
TIGR_CMR|SPO_2350154 SPO_2350 "conserved hypothetic 0.711 0.831 0.291 5.8e-11
UNIPROTKB|Q81LK2137 BAS4282 "Putative Holliday jun 0.744 0.978 0.289 1.5e-10
TIGR_CMR|BA_4614137 BA_4614 "conserved hypothetica 0.744 0.978 0.289 1.5e-10
UNIPROTKB|Q2GH06156 ECH_0460 "Putative Holliday ju 0.755 0.871 0.281 5.9e-09
TIGR_CMR|ECH_0460156 ECH_0460 "conserved hypothetic 0.755 0.871 0.281 5.9e-09
TAIR|locus:4010713830 AT3G52905 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 108/165 (65%), Positives = 129/165 (78%)

Query:     5 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 64
             MKYVKPL L    LK KVS  GRFLGLDVGDKYVGL+ISDP N +ASPLSVLLRKK+ ID
Sbjct:     1 MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60

Query:    65 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124
             LMA DF++L+  F++ G +VGYPF +  N  D V V LFI++L  T+KL+D+KY YW+E 
Sbjct:    61 LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 120

Query:   125 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVN 169
              +SK VEL+L PL+LHPV+ KT+LDK AAV ILQEYLD ANR VN
Sbjct:   121 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANRYVN 165
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0006310 "DNA recombination" evidence=IEA
GO:0006974 "response to DNA damage stimulus" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
UNIPROTKB|Q71ZG8 LMOf2365_1521 "Putative Holliday junction resolvase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AEN4 CHY_0542 "Putative Holliday junction resolvase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0542 CHY_0542 "conserved hypothetical protein TIGR00250" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LQY2 SPO2350 "Putative Holliday junction resolvase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2350 SPO_2350 "conserved hypothetical protein TIGR00250" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q81LK2 BAS4282 "Putative Holliday junction resolvase" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4614 BA_4614 "conserved hypothetical protein TIGR00250" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q2GH06 ECH_0460 "Putative Holliday junction resolvase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0460 ECH_0460 "conserved hypothetical protein TIGR00250" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5NPF1RUVX_ZYMMO3, ., 1, ., -, ., -0.3250.82770.9141yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_I8952
hypothetical protein (171 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_IX0259
alanyl-tRNA synthetase (EC-6.1.1.7) (994 aa)
•       0.784
eugene3.00050325
alanyl-tRNA synthetase (EC-6.1.1.7) (973 aa)
•       0.643
eugene3.55420001
annotation not avaliable (132 aa)
•       0.569
grail3.8458000201
annotation not avaliable (169 aa)
•       0.513
eugene3.27090001
Predicted protein (198 aa)
•     • 0.453
gw1.II.3029.1
hypothetical protein; Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs [...] (392 aa)
•       0.420
eugene3.182270001
Predicted protein (163 aa)
•       0.409

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
pfam03652134 pfam03652, UPF0081, Uncharacterized protein family 1e-31
PRK00109138 PRK00109, PRK00109, Holliday junction resolvase-li 1e-20
smart0073299 smart00732, YqgFc, Likely ribonuclease with RNase 1e-18
COG0816141 COG0816, COG0816, Predicted endonuclease involved 2e-17
TIGR00250130 TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF 2e-08
>gnl|CDD|217659 pfam03652, UPF0081, Uncharacterized protein family (UPF0081) Back     alignment and domain information 
 Score =  110 bits (278), Expect = 1e-31
 Identities = 50/139 (35%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 26  GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 85
           GR LGLDVG K +G++ISDP   +ASPL  + RK    D   E+   LI E+  +G +VG
Sbjct: 1   GRILGLDVGTKRIGVAISDPLGILASPLETIRRKNGNPD--LEELAELIKEWQPDGIVVG 58

Query: 86  YPFNRQQNA-ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 144
            P N   +      +V+ F   L     L        +E  T+   E +L    L   + 
Sbjct: 59  LPLNMDGSEGEMTKRVRKFARRLKKRFGLP---VELVDERLTTVEAERILREAGLSRKKR 115

Query: 145 KTILDKFAAVGILQEYLDN 163
           K ++D  AAV ILQ YLD+
Sbjct: 116 KEVVDSIAAVIILQSYLDS 134

Length = 134
>gnl|CDD|234639 PRK00109, PRK00109, Holliday junction resolvase-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|128971 smart00732, YqgFc, Likely ribonuclease with RNase H fold Back     alignment and domain information
>gnl|CDD|223886 COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B Back     alignment and domain information
>gnl|CDD|129352 TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 180
PRK00109138 Holliday junction resolvase-like protein; Reviewed 100.0
PF03652135 UPF0081: Uncharacterised protein family (UPF0081); 100.0
COG0816141 Predicted endonuclease involved in recombination ( 100.0
TIGR00250130 RNAse_H_YqgF RNAse H-fold protein YqgF. This prote 100.0
smart0073299 YqgFc Likely ribonuclease with RNase H fold. YqgF 99.62
PRK00039164 ruvC Holliday junction resolvase; Reviewed 98.27
PF02075149 RuvC: Crossover junction endodeoxyribonuclease Ruv 97.74
cd00529154 RuvC_resolvase Holliday junction resolvases (HJRs) 97.64
TIGR00228156 ruvC crossover junction endodeoxyribonuclease RuvC 97.64
COG2183 780 Tex Transcriptional accessory protein [Transcripti 97.33
PF04312138 DUF460: Protein of unknown function (DUF460); Inte 97.22
PF14639150 YqgF: Holliday-junction resolvase-like of SPT6 ; P 97.02
COG0817160 RuvC Holliday junction resolvasome, endonuclease s 96.88
COG2433 652 Uncharacterized conserved protein [Function unknow 96.72
PRK05082 291 N-acetylmannosamine kinase; Provisional 95.14
COG1940 314 NagC Transcriptional regulator/sugar kinase [Trans 94.91
PRK09557 301 fructokinase; Reviewed 94.81
COG1548 330 Predicted transcriptional regulator/sugar kinase [ 94.7
PRK13310 303 N-acetyl-D-glucosamine kinase; Provisional 93.58
PF04848143 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 93.57
PRK13311256 N-acetyl-D-glucosamine kinase; Provisional 92.91
PRK13321256 pantothenate kinase; Reviewed 92.26
PF07318 343 DUF1464: Protein of unknown function (DUF1464); In 92.19
COG1214220 Inactive homolog of metal-dependent proteases, put 91.71
PRK12408 336 glucokinase; Provisional 91.18
TIGR03725202 bact_YeaZ universal bacterial protein YeaZ. This f 91.01
TIGR00744 318 ROK_glcA_fam ROK family protein (putative glucokin 90.46
PF00480179 ROK: ROK family; InterPro: IPR000600 A family of b 90.02
TIGR0176682 tspaseT_teng_C transposase, IS605 OrfB family, cen 89.88
PRK13318258 pantothenate kinase; Reviewed 89.66
PRK00292 316 glk glucokinase; Provisional 89.64
PF01548144 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 T 89.61
PRK15080267 ethanolamine utilization protein EutJ; Provisional 88.57
PRK14101 638 bifunctional glucokinase/RpiR family transcription 87.28
PF14239176 RRXRR: RRXRR protein 85.93
PRK09698 302 D-allose kinase; Provisional 85.14
>PRK00109 Holliday junction resolvase-like protein; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=6e-44  Score=277.72  Aligned_cols=134  Identities=31%  Similarity=0.514  Sum_probs=125.5

Q ss_pred             CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHH
Q 030251           25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLF  103 (180)
Q Consensus        25 ~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F  103 (180)
                      .+++||||||++|||||+||+.+.+|+|+.++.+++...  .+++|.+++++|++++||||+|++ ||+.++++..++.|
T Consensus         3 ~~~iLalD~G~kriGvAv~d~~~~~a~pl~~i~~~~~~~--~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f   80 (138)
T PRK00109          3 SGRILGLDVGTKRIGVAVSDPLGGTAQPLETIKRNNGTP--DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKF   80 (138)
T ss_pred             CCcEEEEEeCCCEEEEEEecCCCCEEcCEEEEEcCCCch--HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHH
Confidence            578999999999999999999999999999999875443  479999999999999999999999 99999999999999


Q ss_pred             HHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhh
Q 030251          104 IDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN  163 (180)
Q Consensus       104 ~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~  163 (180)
                      +++|++.  + ++||++|||||||++|++.|++.|.+++++|+.+|++||++|||+||++
T Consensus        81 ~~~L~~~--~-~~~v~~~DEr~TT~~A~~~l~~~~~~~~~~k~~vD~~AA~iILq~yL~~  137 (138)
T PRK00109         81 ANRLEGR--F-GLPVVLVDERLSTVEAERALADVGSRKKLRKGVIDSLAAVIILQSYLDS  137 (138)
T ss_pred             HHHHHHH--h-CCCEEEEcCCcCHHHHHHHHHHcCCChhhcccchhHHHHHHHHHHHHhc
Confidence            9999984  5 8999999999999999999999998888888999999999999999985

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination Back     alignment and domain information
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B Back     alignment and domain information
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF Back     alignment and domain information
>smart00732 YqgFc Likely ribonuclease with RNase H fold Back     alignment and domain information
>PRK00039 ruvC Holliday junction resolvase; Reviewed Back     alignment and domain information
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination [] Back     alignment and domain information
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination Back     alignment and domain information
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC Back     alignment and domain information
>COG2183 Tex Transcriptional accessory protein [Transcription] Back     alignment and domain information
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function Back     alignment and domain information
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A Back     alignment and domain information
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK05082 N-acetylmannosamine kinase; Provisional Back     alignment and domain information
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional Back     alignment and domain information
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products Back     alignment and domain information
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length Back     alignment and domain information
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12408 glucokinase; Provisional Back     alignment and domain information
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames [] Back     alignment and domain information
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK00292 glk glucokinase; Provisional Back     alignment and domain information
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>PF14239 RRXRR: RRXRR protein Back     alignment and domain information
>PRK09698 D-allose kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
1vhx_A150 Crystal Structure Of Putative Holliday Junction Res 8e-09
>pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase Length = 150 Back     alignment and structure 
Iteration: 1

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 27  RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
           R LGLD+G K +G+++SD     A  +  +   +   D        LI ++ ++  ++G+
Sbjct: 4   RILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 63
Query: 87  PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 145
           P N         +  + F   L  T    ++    W+E  T+   E  L   D+   + K
Sbjct: 64  PKNXNGTVGPRGEASQTFAKVLETTY---NVPVVLWDERLTTXAAEKXLIAADVSRQKRK 120
Query: 146 TILDKFAAVGILQEYLDNAN 165
            ++DK AAV ILQ YLD+ N
Sbjct: 121 KVIDKXAAVXILQGYLDSLN 140

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
1vhx_A150 Putative holliday junction resolvase; structural g 6e-37
1nu0_A138 Hypothetical protein YQGF; structural genomics, st 1e-29
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 3e-24
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Length = 150 Back     alignment and structure
 Score =  123 bits (312), Expect = 6e-37
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 25  RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 84
             R LGLD+G K +G+++SD     A  +  +   +   D        LI ++ ++  ++
Sbjct: 2   SLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVL 61

Query: 85  GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 143
           G+P N         +  + F   L   +   ++    W+E  T+   E +L   D+   +
Sbjct: 62  GFPKNMNGTVGPRGEASQTFAKVL---ETTYNVPVVLWDERLTTMAAEKMLIAADVSRQK 118

Query: 144 YKTILDKFAAVGILQEYLDNANR 166
            K ++DK AAV ILQ YLD+ N 
Sbjct: 119 RKKVIDKMAAVMILQGYLDSLNE 141
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Length = 138 Back     alignment and structure
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Length = 98 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
1nu0_A138 Hypothetical protein YQGF; structural genomics, st 100.0
1vhx_A150 Putative holliday junction resolvase; structural g 100.0
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 100.0
4ep4_A166 Crossover junction endodeoxyribonuclease RUVC; res 98.58
1hjr_A158 Holliday junction resolvase (RUVC); site-specific 98.14
3bzc_A 785 TEX; helix-turn-helix, helix-hairpin-helix, S1 dom 97.77
3psf_A 1030 Transcription elongation factor SPT6; nucleus; 2.5 97.32
3psi_A 1219 Transcription elongation factor SPT6; nucleus; 3.3 97.05
3vov_A 302 Glucokinase, hexokinase; ROK, sugar kinase, transf 95.96
2gup_A 292 ROK family protein; sugar kinase, streptococcus pn 95.07
2ch5_A 347 NAGK protein; transferase, N-acetylglucosamine, gl 94.83
2e2o_A 299 Hexokinase; acetate and sugar kinases, HSP70, acti 94.5
3djc_A 266 Type III pantothenate kinase; structural genomics, 94.38
3epq_A 302 Putative fructokinase; SCRK, ADP binding, PSI2, MC 94.21
3vgl_A 321 Glucokinase; ROK family, transferase; HET: BGC ANP 94.09
3r6m_A213 YEAZ, resuscitation promoting factor; actin/HSP70 94.07
1saz_A 381 Probable butyrate kinase 2; askha (acetate and sug 93.8
3mcp_A 366 Glucokinase; structural genomics, joint center for 93.77
4htl_A 297 Beta-glucoside kinase; structural genomics, sugar 93.61
2gel_A231 Putative GRAM negative resuscitation promoting FA; 92.72
2aa4_A 289 Mannac kinase, putative N-acetylmannosamine kinase 92.71
3lm2_A226 Putative kinase; structural genomics, joint center 92.52
2ap1_A 327 Putative regulator protein; zinc binding protein, 92.36
2qm1_A 326 Glucokinase; alpha-beta structure, putative helix- 92.31
2hoe_A 380 N-acetylglucosamine kinase; TM1224, structural gen 92.27
4db3_A 327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 92.26
2a6a_A218 Hypothetical protein TM0874; glycoprotein endopept 92.19
1z6r_A 406 MLC protein; transcriptional repressor, ROK family 91.71
3r8e_A 321 Hypothetical sugar kinase; ribonuclease H-like mot 91.62
1woq_A267 Inorganic polyphosphate/ATP-glucomannokinase; tran 91.47
1z05_A 429 Transcriptional regulator, ROK family; structural 90.92
3htv_A 310 D-allose kinase, allokinase; NP_418508.1, structur 90.53
2ivn_A 330 O-sialoglycoprotein endopeptidase; UP1 keops compl 90.48
1zc6_A 305 Probable N-acetylglucosamine kinase; NESG, Q7NU07_ 90.09
3eno_A 334 Putative O-sialoglycoprotein endopeptidase; hydrol 89.82
1sz2_A 332 Glucokinase, glucose kinase; ATP-dependent, glucos 89.57
2q2r_A 373 Glucokinase 1, putative; ATPase hexose kinase fami 89.41
2ych_A 377 Competence protein PILM; cell cycle, type IV pilus 87.35
2yhw_A 343 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N 87.32
3en9_A 540 Glycoprotease, O-sialoglycoprotein endopeptidase/p 87.14
1zbs_A 291 Hypothetical protein PG1100; alpha-beta protein., 86.92
4ehu_A 276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 85.13
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 83.27
3bex_A249 Type III pantothenate kinase; actin-like fold, ATP 82.07
3i8b_A 515 Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 82.02
3ll3_A 504 Gluconate kinase; xylulose kinase, nysgx, ATP, ADP 81.2
2h3g_X 268 Biosynthetic protein; pantothenate kinase, anthrax 80.65
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Back     alignment and structure
Probab=100.00  E-value=1.3e-45  Score=286.10  Aligned_cols=134  Identities=19%  Similarity=0.304  Sum_probs=117.1

Q ss_pred             CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHH
Q 030251           25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLF  103 (180)
Q Consensus        25 ~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F  103 (180)
                      ++++||||||+||||||+||+.+.+|+|++||.+++.+.  .+++|.+++++|+++.||||+|++ ||+++++++++++|
T Consensus         2 ~~~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~--~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f   79 (138)
T 1nu0_A            2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTP--DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKF   79 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEE--CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHH
T ss_pred             CCeEEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCCcch--HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHH
Confidence            368999999999999999999999999999998754333  379999999999999999999999 99999999999999


Q ss_pred             HHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhh
Q 030251          104 IDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN  163 (180)
Q Consensus       104 ~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~  163 (180)
                      +++|++.  + ++||++|||||||++|++.|++.+.+++++|+.+|++||++|||+||+.
T Consensus        80 ~~~L~~~--~-~lpV~~~DERlTT~~A~~~l~~~~~~~~~~k~~iD~~AA~iILq~yLd~  136 (138)
T 1nu0_A           80 ANRIHGR--F-GVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYMEQ  136 (138)
T ss_dssp             HHHHHHH--H-CCCEEEEEEECCCCCC-------CCCCCCCHHHHTTHHHHHHHHHHHHT
T ss_pred             HHHHHHH--h-CCCEEEEcCCcCHHHHHHHHHHhcCcccccCcchhHHHHHHHHHHHHhc
Confidence            9999984  5 7999999999999999999998776777788899999999999999986
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Back     alignment and structure
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Back     alignment and structure
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A Back     alignment and structure
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 Back     alignment and structure
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Back     alignment and structure
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Back     alignment and structure
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus} Back     alignment and structure
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* Back     alignment and structure
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A Back     alignment and structure
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens} Back     alignment and structure
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9 Back     alignment and structure
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Back     alignment and structure
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Back     alignment and structure
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Back     alignment and structure
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* Back     alignment and structure
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A Back     alignment and structure
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 180
d1vhxa_140 c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Ba 6e-26
d1nu0a_138 c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Es 6e-22
d1iv0a_98 c.55.3.8 (A:) Hypothetical protein, YqgF homologue 2e-18
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} Length = 140 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 94.4 bits (234), Expect = 6e-26
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 27  RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
           R LGLD+G K +G+++SD     A  +  +   +   D        LI ++ ++  ++G+
Sbjct: 3   RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 62

Query: 87  PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
           P N         + +         +   ++    W+E  T+   E +L   D+   + K 
Sbjct: 63  PKNMNGTVGP--RGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKK 120

Query: 147 ILDKFAAVGILQEYLDNAN 165
           ++DK AAV ILQ YLD+ N
Sbjct: 121 VIDKMAAVMILQGYLDSLN 139
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Length = 138 Back     information, alignment and structure
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
d1vhxa_140 Hypothetical protein YrrK (RuvX) {Bacillus subtili 100.0
d1nu0a_138 Hypothetical protein YqgF (RuvX) {Escherichia coli 100.0
d1iv0a_98 Hypothetical protein, YqgF homologue {Thermus ther 100.0
d3bzka5149 Transcriptional accessory factor Tex {Pseudomonas 98.9
d1hjra_158 RuvC resolvase {Escherichia coli [TaxId: 562]} 98.16
d2aa4a1119 N-acetylmannosamine kinase NanK {Escherichia coli 96.97
d2gupa1114 Hypothetical protein SP2142 {Streptococcus pneumon 96.97
d2ap1a2117 Putative regulator protein YcfX {Salmonella typhim 96.77
d1xc3a1118 Putative fructokinase YhdR {Bacillus subtilis [Tax 96.74
d1z05a3128 Transcriptional regulator VC2007 {Vibrio cholerae 96.47
d1z6ra2129 Mlc protein {Escherichia coli [TaxId: 562]} 96.35
d2hoea3128 N-acetylglucosamine kinase {Thermotoga maritima [T 95.57
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 95.56
d1okja1106 Hypothetical protein YeaZ {Escherichia coli [TaxId 95.52
d1sz2a1 319 Glucokinase Glk {Escherichia coli [TaxId: 562]} 94.73
d1woqa1129 Inorganic polyphosphate/ATP-glucomannokinase PPGMK 94.39
d2a6aa1103 Hypothetical protein TM0874 {Thermotoga maritima [ 93.32
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 92.89
d1huxa_ 259 Hydroxyglutaryl-CoA dehydratase component A {Acida 92.83
d2ch5a2117 N-acetylglucosamine kinase, NAGK {Human (Homo sapi 88.57
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 88.37
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 85.8
d2ewsa1 267 Type II pantothenate kinase, CoaW {Staphylococcus 84.15
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.5e-45  Score=280.67  Aligned_cols=137  Identities=28%  Similarity=0.457  Sum_probs=128.3

Q ss_pred             CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHH
Q 030251           26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFI  104 (180)
Q Consensus        26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~  104 (180)
                      ||+||||||+||||||+||+.+.+|+|+.++.+++.+.+.++.+|.+++.+|+|++||||+|++ +|+++++++.++.|+
T Consensus         2 mriLgiD~G~kriGvAisd~~~~~a~pl~~i~~~~~~~~~~~~~l~~ii~e~~i~~iViGlP~~~dg~~~~~~~~~~~f~   81 (140)
T d1vhxa_           2 LRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFA   81 (140)
T ss_dssp             EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCEEEEEEecCCCCcccceeeEeecccccchHHHHHHHHHHhhccceEEEecccccCCcchhHHHHHHHHH
Confidence            7899999999999999999999999999999876554444589999999999999999999999 999999999999999


Q ss_pred             HHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhhhh
Q 030251          105 DDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNAN  165 (180)
Q Consensus       105 ~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~~~  165 (180)
                      +.|++.  + ++||++|||||||++|++.|++.|.+++++|+.+|++||++|||+||++.+
T Consensus        82 ~~l~~~--~-~i~V~~~DEr~TS~~A~~~l~~~~~~~~~~k~~iD~~AA~iILe~~L~~~n  139 (140)
T d1vhxa_          82 KVLETT--Y-NVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLN  139 (140)
T ss_dssp             HHHHHH--H-CSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhccC--C-CccEEEeecccCHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHhc
Confidence            999984  4 899999999999999999999999999888999999999999999999865
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} Back     information, alignment and structure
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure