Citrus Sinensis ID: 030267

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQQLED
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHccccccEEEEEcccEEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEEEEEcEEEEEEcccEEEEEcccccEEHHccccHHcc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccHHHcccccccccccccHHHHHHHHHccccccEEEEEcccEEEEEEccccccccccEEEEHccHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHccccccccEEEEEcHHHHHccHHHHHcccHHHHHHHHHHHHHHHEEccHHHccc
Coil and Loop (DISEMBL)
mlgvfssaivsppeelvaagsrtpspkttsTALVDRFLQTnssavsvqvGDNVTLaythqnesplrqrsfAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKAlrdrapyppnhvvghlsgtNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQQLED
Flexible Loop (DISEMBL)
mlgvfssaivsppeelvaagsrtpspkTTSTALVDRFLQTNSSAVSVQVGDNVTLAYthqnesplrqrSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLkvvssqqqled
Low Complexity Region (SEG)
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESllmdmlpllmmlTCskvlaashlllslkvvssqqqlED
Disordered region (IsUnstruct)
*********************************VDRFLQTNSSAVSVQVGDNVTLAYTHQN**PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVV********
Disordered Region (DISOPRED)
MLGVFSSAIVS************************RFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVS*******
Disordered Region (DISEMBL)
MLGVFSSAIVSPPEE*************TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKV*********
Disordered Region (DISPRO)
ML**FSSAIVSPPEELVA**********TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQQLED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
P24805	149	Stem-specific protein TSJ	N/A	no	0.744	0.899	0.411	3e-25

>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 7/141 (4%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGTNLVRFLFI 139
           YPP+ V+  L G    +F FI
Sbjct: 120 YPPDQVIKELEG----KFAFI 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,909,674
Number of Sequences: 539616
Number of extensions: 2119674
Number of successful extensions: 5715
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5712
Number of HSP's gapped (non-prelim): 3
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
56606534	236	aluminum-induced protein [Codonopsis lan	0.75	0.572	0.812	2e-60
388513727	236	unknown [Lotus japonicus]	0.75	0.572	0.798	5e-60
255552269	236	Stem-specific protein TSJT1, putative [R	0.75	0.572	0.827	8e-60
34541994	236	Al-induced protein [Gossypium hirsutum]	0.75	0.572	0.805	4e-59
224100337	236	predicted protein [Populus trichocarpa]	0.75	0.572	0.820	6e-59
257219564	236	Al-induced protein [Jatropha curcas]	0.75	0.572	0.812	8e-59
225432548	236	PREDICTED: stem-specific protein TSJT1 [	0.75	0.572	0.812	1e-58
76573367	252	unknown [Solanum tuberosum]	0.75	0.535	0.805	2e-58
13958130	236	aluminium induced protein [Avicennia mar	0.75	0.572	0.791	3e-58
388504600	237	unknown [Medicago truncatula] gi|3885083	0.75	0.569	0.792	8e-58

>gi|56606534|gb|AAW02789.1| aluminum-induced protein [Codonopsis lanceolata]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 126/139 (90%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPPEELVAAGSRTPSPK T+TALV+RFL++N+SAVS+QVGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPEELVAAGSRTPSPKITATALVNRFLKSNASAVSMQVGDDVHLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP   RSFAVKDEIFCLFEGALDNLGSL+QQYGL+KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPSAPRSFAVKDEIFCLFEGALDNLGSLKQQYGLSKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
           PNHVVGHL G     F F+
Sbjct: 121 PNHVVGHLEG----NFAFV 135

Source: Codonopsis lanceolata

Species: Codonopsis lanceolata

Genus: Codonopsis

Family: Campanulaceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513727|gb|AFK44925.1| unknown [Lotus japonicus]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/139 (79%), Positives = 128/139 (92%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPKTT+ AL+ RF+++N+SAVSV++G+NV LAY+H+
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKTTAGALLKRFVESNASAVSVEIGENVQLAYSHR 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP + RSFAVKDEIFC+FEGALDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPWQPRSFAVKDEIFCIFEGALDNLGSLRQQYGLAKSANEVLLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
            NHVVGHLSG+    F FI
Sbjct: 121 ANHVVGHLSGS----FAFI 135

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552269|ref|XP_002517179.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223543814|gb|EEF45342.1| Stem-specific protein TSJT1, putative [Ricinus communis]

 Score =  234 bits (598), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 124/139 (89%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK TS ALV RFL TN SAVS+Q+GDN  LAYTH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKITSDALVKRFLDTNPSAVSLQIGDNAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           +ES L+ RSFAVKD+IFCLFEGALDNLGSL+QQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  SESLLQPRSFAVKDDIFCLFEGALDNLGSLKQQYGLAKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
           PNHVVGHLSG+    F FI
Sbjct: 121 PNHVVGHLSGS----FAFI 135

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34541994|gb|AAQ74889.1| Al-induced protein [Gossypium hirsutum]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/139 (80%), Positives = 122/139 (87%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAG RTPSPK T+ ALV RFL+TNSS VS+ +GD+V  AY+H 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGCRTPSPKITADALVKRFLETNSSGVSMHIGDHVQFAYSHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
            ESPL+ RSFAVKDEIFCLFEGALDNLGSL+QQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  KESPLQPRSFAVKDEIFCLFEGALDNLGSLKQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
           PNHVVGHL G+    F FI
Sbjct: 121 PNHVVGHLIGS----FAFI 135

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100337|ref|XP_002311836.1| predicted protein [Populus trichocarpa] gi|118485817|gb|ABK94756.1| unknown [Populus trichocarpa] gi|222851656|gb|EEE89203.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 114/139 (82%), Positives = 124/139 (89%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK ++ ALV RF+ TNSSAVSV+VGD+  +A+TH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKISADALVKRFVDTNSSAVSVRVGDDSQVAFTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES L  RSFAVKDEI+CLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  NESMLLPRSFAVKDEIYCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
           PNHVVGHLSG+    F FI
Sbjct: 121 PNHVVGHLSGS----FAFI 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257219564|gb|ACV50435.1| Al-induced protein [Jatropha curcas]

 Score =  231 bits (589), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 123/139 (88%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPKTT+ ALV RF+ TN SAVS+Q+GDN  LAYTH 
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKTTADALVKRFIDTNPSAVSLQIGDNAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           +ES L  RSFAVKD++FCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  SESLLHPRSFAVKDDVFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
            NHVVGHLSG+    F FI
Sbjct: 121 ANHVVGHLSGS----FAFI 135

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432548|ref|XP_002280658.1| PREDICTED: stem-specific protein TSJT1 [Vitis vinifera] gi|297736991|emb|CBI26192.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 123/139 (88%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPP+ELVAAG RTPSPK T+ AL++RF+Q N SAVSV VGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPDELVAAGCRTPSPKITAEALMNRFIQGNPSAVSVHVGDHVQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESPL  RSFAVKDEIF LFEGALDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPLLPRSFAVKDEIFSLFEGALDNLGSLRQQYGLAKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
           PNHVVGHLSG+    F FI
Sbjct: 121 PNHVVGHLSGS----FAFI 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573367|gb|ABA46788.1| unknown [Solanum tuberosum]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/139 (80%), Positives = 123/139 (88%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPPEELVAAGSRTPSPK TS ALV+RF+Q NSSA+S+Q+GD V LAY+H 
Sbjct: 1   MLGVFSSSIVSPPEELVAAGSRTPSPKITSDALVNRFVQRNSSAISMQIGDFVQLAYSHS 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES +  RSFAVKD+IFCLFEG+LDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESAVLPRSFAVKDDIFCLFEGSLDNLGSLRQQYGLAKSANEVMLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
           PNHVVGHL G     F FI
Sbjct: 121 PNHVVGHLEGN----FAFI 135

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13958130|gb|AAK50814.1|AF363286_1 aluminium induced protein [Avicennia marina]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 121/139 (87%), Gaps = 4/139 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPK  +T LV RFL+ NSSAVSV++GD+  LAYTH 
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKVAATKLVGRFLEANSSAVSVKIGDDAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           N+S LR RSFAVKDEIFCLFEGALDNLGSL+QQYGL KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NQSALRPRSFAVKDEIFCLFEGALDNLGSLKQQYGLGKSANEVLLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGTNLVRFLFI 139
           P+HVVGHL G     F FI
Sbjct: 121 PSHVVGHLQGN----FAFI 135

Source: Avicennia marina

Species: Avicennia marina

Genus: Avicennia

Family: Acanthaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504600|gb|AFK40366.1| unknown [Medicago truncatula] gi|388508374|gb|AFK42253.1| unknown [Medicago truncatula]

 Score =  228 bits (581), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 111/140 (79%), Positives = 122/140 (87%), Gaps = 5/140 (3%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNS-SAVSVQVGDNVTLAYTH 59
           MLGVFSS++VSPP+ELVAAGSRTPSPKTT+TAL+ RF ++N  S VSV+VGD V  AYTH
Sbjct: 1   MLGVFSSSVVSPPDELVAAGSRTPSPKTTATALLKRFSESNGGSTVSVEVGDKVRFAYTH 60

Query: 60  QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPY 119
           QNES L+ R F VKDEIFC+FEGALDNLG LRQQYGLAKSANEV+LVIEAYKALRDRAPY
Sbjct: 61  QNESSLQPRMFGVKDEIFCMFEGALDNLGRLRQQYGLAKSANEVVLVIEAYKALRDRAPY 120

Query: 120 PPNHVVGHLSGTNLVRFLFI 139
           PPNHVVGHLSGT    F FI
Sbjct: 121 PPNHVVGHLSGT----FAFI 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2182137	234	AILP1 "AT5G19140" [Arabidopsis	0.722	0.555	0.807	1.3e-52
TAIR|locus:2090116	253	AT3G15450 "AT3G15450" [Arabido	0.722	0.513	0.440	1e-22
TAIR|locus:2170822	251	AT5G43830 "AT5G43830" [Arabido	0.75	0.537	0.417	1.6e-22
TAIR|locus:2123994	250	AT4G27450 "AT4G27450" [Arabido	0.727	0.524	0.432	9e-22
TAIR|locus:2084598	248	AT3G22850 "AT3G22850" [Arabido	0.688	0.5	0.407	1.5e-19

TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 105/130 (80%), Positives = 116/130 (89%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             MLG+FS AIVSPPEELVAAGSRTPSPKTT + LV+RF++ N SAVSVQVGD V LAY+H 
Sbjct:     1 MLGIFSGAIVSPPEELVAAGSRTPSPKTTGSTLVNRFVEKNPSAVSVQVGDYVQLAYSHH 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             NESPLR RSF  KDEIFCLF+G+LDNLGSL+QQYGLAK+ANEV+LVIEAYK LRDRAPYP
Sbjct:    61 NESPLRPRSFGAKDEIFCLFQGSLDNLGSLKQQYGLAKNANEVLLVIEAYKTLRDRAPYP 120

Query:   121 PNHVVGHLSG 130
              NHVV HLSG
Sbjct:   121 ANHVVAHLSG 130

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010044 "response to aluminum ion" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 59/134 (44%), Positives = 80/134 (59%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTP--SPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
             ML +F  A   PPEEL +  S     +PK     L D      ++A S+  GD+  LAY 
Sbjct:     1 MLAIFQKAFAHPPEELNSPASHFSGKTPKLPGETLSDFLSHHQNNAFSMNFGDSAVLAYA 60

Query:    59 HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRA 117
              Q E+ LRQR F   D I+C+F G L+NL +L +QYGL+ K++NE + VIEAY+ LRDR 
Sbjct:    61 RQ-ETSLRQRLFCGLDGIYCMFLGRLNNLCTLNRQYGLSGKNSNEAMFVIEAYRTLRDRG 119

Query:   118 PYPPNHVVGHLSGT 131
             PYP + V+  L G+
Sbjct:   120 PYPADQVLRGLEGS 133

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 58/139 (41%), Positives = 79/139 (56%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             ML VF   + + PE L +  S   +      +L   F   N ++V++  G +  +AY+  
Sbjct:     1 MLAVFEKTVANSPEALQSPHSSESAFALKDGSLATHFASVNPNSVTLNFGSSGFVAYSLD 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             N  P   R FAV D+IFCLF+G ++NL  L+QQYGL K  NE I+VIEAY+ LRDR PYP
Sbjct:    61 NPDPRVPRLFAVVDDIFCLFQGHIENLPFLKQQYGLNKITNEAIIVIEAYRTLRDRGPYP 120

Query:   121 PNHVVGHLSGTNLVRFLFI 139
              + VV    G    +F FI
Sbjct:   121 VDKVVRDFHG----KFAFI 135

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 58/134 (43%), Positives = 75/134 (55%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
             ML +F  A   PPEEL +  S   S  PK     L D  L+   +  S+  G    LAY 
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEKCSKQPKLPEETLNDFLLRYPLNTFSMSFGQAAVLAYV 60

Query:    59 HQNES-PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117
               + S  + QR F   D+I+CLF G+L+NL  L +QYGL K+ NE + VIEAY+ LRDR 
Sbjct:    61 RPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDRG 120

Query:   118 PYPPNHVVGHLSGT 131
             PYP + VV  L G+
Sbjct:   121 PYPADQVVKDLDGS 134

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 55/135 (40%), Positives = 78/135 (57%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSS-----AVSVQVGDNVTL 55
             ML +F   +   PE L   G    S      AL DRFL  + S     AV++ +G +  +
Sbjct:     1 MLAIFDKNVAKTPEAL--QGQEGGSV----CALKDRFLPNHFSSVYPGAVTINLGSSGFI 54

Query:    56 AYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRD 115
             A + + ++PL  R FAV D++FC+F+G ++N+  L+QQYGL K+A EV +VIEAY+ LRD
Sbjct:    55 ACSLEKQNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRD 114

Query:   116 RAPYPPNHVVGHLSG 130
             R PY    VV    G
Sbjct:   115 RGPYSAEQVVRDFQG 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       146   0.00079  103 3  11 22  0.47    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  534 (57 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.60u 0.11s 16.71t   Elapsed:  00:00:01
  Total cpu time:  16.60u 0.11s 16.71t   Elapsed:  00:00:01
  Start:  Fri May 10 17:13:25 2013   End:  Fri May 10 17:13:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0009049102 SubName- Full=Putative uncharacterized protein; (237 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam12481	228	pfam12481, DUF3700, Aluminium induced protein	8e-72
cd01910	224	cd01910, Wali7, This domain is present in Wali7, a	8e-71

>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein

 Score =  215 bits (551), Expect = 8e-72
 Identities = 74/140 (52%), Positives = 92/140 (65%), Gaps = 6/140 (4%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSP--KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH 59
           L VF  ++  PPEEL +  SR PS   K     L+  F+  N +AVSV  GD+  LAY+H
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 60  QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPY 119
             +SPL  R FAV D+IFCLF+G L+NL SLRQQYGL+K+ANE +LVIEAY+ LRDR PY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 120 PPNHVVGHLSGTNLVRFLFI 139
           P + VV  L G     F F+
Sbjct: 121 PADQVVKDLEG----SFAFV 136

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228

>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

 Score =  213 bits (544), Expect = 8e-71
 Identities = 83/138 (60%), Positives = 99/138 (71%), Gaps = 6/138 (4%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQN 61
           L VFS A+  PPEELV+AGSRTP    T+  L+ RFL  N SAV V +G    LAY+H N
Sbjct: 1   LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHN 58

Query: 62  ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPP 121
           +SPL  R FAVKD+IFCLF+G LDNLGSL+QQYGL+K+ANE +LVIEAY+ LRDR PYP 
Sbjct: 59  QSPLHPRLFAVKDDIFCLFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPA 118

Query: 122 NHVVGHLSGTNLVRFLFI 139
           + VV  L G     F F+
Sbjct: 119 DQVVKDLEG----SFAFV 132

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. Length = 224

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF12481	228	DUF3700: Aluminium induced protein ; InterPro: IPR	100.0
cd01910	224	Wali7 This domain is present in Wali7, a protein o	100.0
cd00712	220	AsnB Glutamine amidotransferases class-II (GATase)	97.77
PF13537	125	GATase_7: Glutamine amidotransferase domain; PDB:	97.5
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	96.5
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	96.23
cd00352	220	Gn_AT_II Glutamine amidotransferases class-II (GAT	96.15
PTZ00077	586	asparagine synthetase-like protein; Provisional	96.13
cd01909	199	betaLS_CarA_N Glutamine amidotransferases class-II	95.92
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	95.83
PRK09431	554	asnB asparagine synthetase B; Provisional	95.78
cd00714	215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	95.48
cd03766	181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	94.36
PF13522	133	GATase_6: Glutamine amidotransferase domain	94.31
TIGR03104	589	trio_amidotrans asparagine synthase family amidotr	93.88
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	92.46
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	91.16
cd01907	249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	89.96
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	86.65
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	86.54
PRK07847	510	amidophosphoribosyltransferase; Provisional	86.3
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	86.11
cd00715	252	GPATase_N Glutamine amidotransferases class-II (GN	86.09
PRK08525	445	amidophosphoribosyltransferase; Provisional	83.61
PRK07349	500	amidophosphoribosyltransferase; Provisional	82.93
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	81.06
PRK08341	442	amidophosphoribosyltransferase; Provisional	80.21

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length

Probab=100.00  E-value=2e-79  Score=520.18  Aligned_cols=160  Identities=45%  Similarity=0.744  Sum_probs=154.2

Q ss_pred             cccccccccCCccccccCCCCCCC--CCCChHHHHHHHhcCCCCcEEEEeCCceEEEEecCCCCCccccccccccceeEe
Q 030267            2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL   79 (180)
Q Consensus         2 LaVF~ksVa~~PeEL~Sp~s~~~s--~~k~~~ell~~F~s~~p~avsv~~G~~~~LAYs~~~~~~l~pR~F~~~DDIfCl   79 (180)
                      ||||+|+||++||||+||++..++  ++|+++||+++|+++||+||||+||++++|||||++|++++||+||++||||||
T Consensus         1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi   80 (228)
T PF12481_consen    1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI   80 (228)
T ss_pred             CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence            899999999999999999976443  699999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec--------------------
Q 030267           80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--------------------  139 (180)
Q Consensus        80 F~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--------------------  139 (180)
                      |+|+||||+.|||||||||+|||||||||||||||||||||||||||||+|+|||++||.                    
T Consensus        81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG  160 (228)
T PF12481_consen   81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG  160 (228)
T ss_pred             EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence            999999999999999999999999999999999999999999999999999999999973                    


Q ss_pred             ----chhhhhcchhHHHHHHhHHHHHh
Q 030267          140 ----GESLLMDMLPLLMMLTCSKVLAA  162 (180)
Q Consensus       140 ----g~~~~~d~l~~~~~~~c~k~~a~  162 (180)
                          |++||+||+.+ |.++|+|+||.
T Consensus       161 i~~DGslv~Sdd~~~-ik~~C~kS~Ap  186 (228)
T PF12481_consen  161 IAADGSLVFSDDLEL-IKEGCGKSFAP  186 (228)
T ss_pred             EeCCCCEEEcCCHHH-HHhhhhhccCC
Confidence                78999999999 99999999985

There are two conserved sequence motifs: YGL and LRDR.

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

Probab=100.00  E-value=7.8e-49  Score=331.47  Aligned_cols=164  Identities=54%  Similarity=0.862  Sum_probs=149.0

Q ss_pred             cccccccccCCccccccCCCCCCCCCCChHHHHHHHhcCCCCcEEEEeCCceEEEEecCCCCCccccccccccceeEeec
Q 030267            2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE   81 (180)
Q Consensus         2 LaVF~ksVa~~PeEL~Sp~s~~~s~~k~~~ell~~F~s~~p~avsv~~G~~~~LAYs~~~~~~l~pR~F~~~DDIfClF~   81 (180)
                      ||||+|+||++||||+||++.++  +++++||+++|+++||++|+++||+++.|||+|++|++++||+|++.|+|+|+|.
T Consensus         1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn   78 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ   78 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence            89999999999999999987533  6788899999999999999999999999999999999999999999999999999


Q ss_pred             ccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec----------------------
Q 030267           82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI----------------------  139 (180)
Q Consensus        82 G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~----------------------  139 (180)
                      |.|.|...||+|||+.|+++|+++|||+||++||||||||++++++|+|.|||++||.                      
T Consensus        79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~  158 (224)
T cd01910          79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA  158 (224)
T ss_pred             eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999863                      


Q ss_pred             --chhhhhcchhHHHHHHhHHHHH---hhhhhhh
Q 030267          140 --GESLLMDMLPLLMMLTCSKVLA---ASHLLLS  168 (180)
Q Consensus       140 --g~~~~~d~l~~~~~~~c~k~~a---~~~~~~~  168 (180)
                        |..++++++.. +...|.|+++   ..|...|
T Consensus       159 ~dG~l~FASElka-L~~~c~~~~~~FPpG~~~~s  191 (224)
T cd01910         159 ADGSVVFSDDVEL-VKASCGKSFAPFPKGCFFHS  191 (224)
T ss_pred             CCCEEEEEeCHHH-hhhhhccEEEEECCCCEEeC
Confidence              45677888888 5677976543   4565443

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

Probab=97.77  E-value=8.8e-05  Score=60.16  Aligned_cols=102  Identities=13%  Similarity=0.289  Sum_probs=70.3

Q ss_pred             HHHHHhcCCCCcEEEEeCCceEEEEecC-------CCCCccccccccccceeEeecccccChHHHHHhhCCc----cccc
Q 030267           33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQ-------NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLA----KSAN  101 (180)
Q Consensus        33 ll~~F~s~~p~avsv~~G~~~~LAYs~~-------~~~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGLs----K~aN  101 (180)
                      ++..-.-.=|++..+...+...|+.+.-       +..|+.-+    -.++.++|-|.|.|-..|++.++..    ++.+
T Consensus        22 ~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~----~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~s   97 (220)
T cd00712          22 MLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSE----DGRLVLVFNGEIYNYRELRAELEALGHRFRTHS   97 (220)
T ss_pred             HHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeC----CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCC
Confidence            4444444446665555544444544431       11132222    1478999999999999999998763    6888


Q ss_pred             ceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec--chhhhh
Q 030267          102 EVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--GESLLM  145 (180)
Q Consensus       102 Ev~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--g~~~~~  145 (180)
                      ++-+++++|+.-   |    .+++++++|.|+|++++.  ++.++.
T Consensus        98 D~e~l~~~~~~~---g----~~~~~~l~G~fa~vi~d~~~~~l~~~  136 (220)
T cd00712          98 DTEVILHLYEEW---G----EDCLERLNGMFAFALWDKRKRRLFLA  136 (220)
T ss_pred             hHHHHHHHHHHH---h----HHHHHHhhheEEEEEEECCCCEEEEE
Confidence            999999999864   4    689999999999999987  555443

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A

Probab=97.50  E-value=0.00011  Score=55.30  Aligned_cols=65  Identities=18%  Similarity=0.291  Sum_probs=44.7

Q ss_pred             cccceeEeecccccChHHHHHhhCCc----ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecc
Q 030267           72 VKDEIFCLFEGALDNLGSLRQQYGLA----KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIG  140 (180)
Q Consensus        72 ~~DDIfClF~G~LeNL~~L~qQYGLs----K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g  140 (180)
                      .-+++.+.|.|.|.|...|++++...    ++.+++-++.++|+..++-|    .+++++++|.|||++++..
T Consensus        20 ~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~G~fa~v~~d~~   88 (125)
T PF13537_consen   20 EDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLDGPFAFVIWDKD   88 (125)
T ss_dssp             -----EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--EEEEEEEEETT
T ss_pred             cccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEEEEEeCC
Confidence            45789999999999999999999652    56677777889998744444    3689999999999999983

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=96.50  E-value=0.0047  Score=55.58  Aligned_cols=62  Identities=18%  Similarity=0.335  Sum_probs=50.5

Q ss_pred             ceeEeecccccChHHHHHhhCC---c-ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec--chhh
Q 030267           75 EIFCLFEGALDNLGSLRQQYGL---A-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--GESL  143 (180)
Q Consensus        75 DIfClF~G~LeNL~~L~qQYGL---s-K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--g~~~  143 (180)
                      .+.++|-|.|.|-..|+++++.   . ++.+++-++.++|+..   |    .+++++|+|.|||+++|-  ++.+
T Consensus        67 ~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~~~---g----~~~~~~l~G~fa~~i~D~~~~~l~  134 (467)
T TIGR01536        67 TYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEEW---G----EECVDRLDGMFAFALWDSKKGELF  134 (467)
T ss_pred             CEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHHHH---H----HHHHHHcCCcEEEEEEECCCCEEE
Confidence            6788999999999999998752   2 4566677788999865   3    679999999999999987  5543

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=96.23  E-value=0.015  Score=54.39  Aligned_cols=72  Identities=17%  Similarity=0.290  Sum_probs=54.3

Q ss_pred             cceeEeecccccChHHHHHhh---CCc-ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec--ch-hhhhc
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--GE-SLLMD  146 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GLs-K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--g~-~~~~d  146 (180)
                      ..+-++|-|.|.|-..|++++   |.. ++.++.-+++++|+.-.       .+++++|+|.|||++++.  +. .+.-|
T Consensus        68 ~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g-------~~~~~~l~G~fa~~~~d~~~~~l~~~rD  140 (628)
T TIGR03108        68 GSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEEWG-------EACVERFRGMFAFALWDRNQETLFLARD  140 (628)
T ss_pred             CCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHHHHH-------HHHHHHcCCCEEEEEEECCCCEEEEEEC
Confidence            368889999999999999985   442 45556667899998753       579999999999999997  34 34445


Q ss_pred             c---hhHHH
Q 030267          147 M---LPLLM  152 (180)
Q Consensus       147 ~---l~~~~  152 (180)
                      -   .|+..
T Consensus       141 ~~G~~PLyy  149 (628)
T TIGR03108       141 RLGIKPLYY  149 (628)
T ss_pred             CCCCcceEE
Confidence            5   46544

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)

Probab=96.15  E-value=0.012  Score=46.01  Aligned_cols=78  Identities=10%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             ccccccccccceeEeecccccChHHHHHhhC----CcccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEE
Q 030267           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQYG----LAKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFL  137 (180)
Q Consensus        65 l~pR~F~~~DDIfClF~G~LeNL~~L~qQYG----LsK~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~  137 (180)
                      -||-.... .++..++-|.|+|...|++.++    ..++.++.-++..+|+...+.+. +.   .+.++.++|.|+|+++
T Consensus        88 ~hPf~~~~-~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~~~  165 (220)
T cd00352          88 AQPFRSED-GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGG-LFEAVEDALKRLDGPFAFALW  165 (220)
T ss_pred             CCCcCcCC-CCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCC-HHHHHHHHHHhCCccEEEEEE
Confidence            55644443 6999999999999999998876    46788888888888887765543 22   4578889999999999


Q ss_pred             ec--chhhh
Q 030267          138 FI--GESLL  144 (180)
Q Consensus       138 ~~--g~~~~  144 (180)
                      +.  +..++
T Consensus       166 d~~~~~l~~  174 (220)
T cd00352         166 DGKPDRLFA  174 (220)
T ss_pred             ECCCCEEEE
Confidence            98  55443

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=96.13  E-value=0.0062  Score=57.86  Aligned_cols=60  Identities=17%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~  139 (180)
                      ..+.++|-|.|-|-..||++++.    -++.++.-+++++|+.   .|+   ++++++|+|.|||++||.
T Consensus        73 ~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~---~G~---~~~l~~L~G~FAf~i~D~  136 (586)
T PTZ00077         73 ETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKE---YGP---KDFWNHLDGMFATVIYDM  136 (586)
T ss_pred             CCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hCH---HHHHHhcCCCEEEEEEEC
Confidence            46899999999999999999742    2677888899999985   343   479999999999999985

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type

Probab=95.92  E-value=0.0082  Score=50.27  Aligned_cols=64  Identities=19%  Similarity=0.102  Sum_probs=53.2

Q ss_pred             cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec-chhhh
Q 030267           74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI-GESLL  144 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~-g~~~~  144 (180)
                      +++-++|-|.|.|-..|+++.+.    .++.+++-+++.+|+..-       .+.+++|+|.|||+++|. ++.++
T Consensus        50 ~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G-------~~~l~~L~G~FAfai~D~~~~L~l  118 (199)
T cd01909          50 ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLG-------LHAFRLAEGDFCFFIEDGNGRLTL  118 (199)
T ss_pred             CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHh-------HHHHHHcCEEEEEEEEcCCCEEEE
Confidence            67999999999999999998633    377888889999998553       358999999999999998 55444

Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=95.83  E-value=0.013  Score=55.81  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=50.6

Q ss_pred             cceeEeecccccChHHHHHhhC--CcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQYG--LAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYG--LsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~  139 (180)
                      ..+.++|-|.|-|-..||++++  --++.++.-+++++|+.-   |    .+++++|+|.|||++||.
T Consensus        68 ~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~~~---G----~~~~~~L~G~FAf~i~D~  128 (578)
T PLN02549         68 KTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEEH---G----EEFVDMLDGMFSFVLLDT  128 (578)
T ss_pred             CCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---H----HHHHHhCCCceEEEEEEC
Confidence            3588999999999999999985  347788888999999864   4    269999999999999985

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=95.78  E-value=0.03  Score=52.82  Aligned_cols=105  Identities=12%  Similarity=0.189  Sum_probs=66.7

Q ss_pred             HHHHHhcCCCCcEEEEeCCceEEEEecCC----CCCccccccccccceeEeecccccChHHHHHhhCC---cccccceee
Q 030267           33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQN----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSANEVIL  105 (180)
Q Consensus        33 ll~~F~s~~p~avsv~~G~~~~LAYs~~~----~~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGL---sK~aNEv~l  105 (180)
                      .++.-.-.=|+..-+...+.+.|+...-.    ..--+| .+..-..+.++|-|.|-|-..|+++++-   -++.++.=+
T Consensus        24 m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Ev  102 (554)
T PRK09431         24 MSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQP-LYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEV  102 (554)
T ss_pred             HHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCC-CCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHH
Confidence            44444444566555555444555543211    111112 1233346788999999999999998752   245556666


Q ss_pred             hHHHHHHhHhcCCCCcccccccccCceEEEEEec--chhhhh
Q 030267          106 VIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--GESLLM  145 (180)
Q Consensus       106 VIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--g~~~~~  145 (180)
                      ++++|+..   |+    +++++|+|.|||++||.  ++.++.
T Consensus       103 il~ly~~~---G~----~~~~~L~G~FAf~i~D~~~~~l~la  137 (554)
T PRK09431        103 ILALYQEK---GP----DFLDDLDGMFAFALYDSEKDAYLIA  137 (554)
T ss_pred             HHHHHHHH---HH----HHHHhCCCceEEEEEECCCCEEEEE
Confidence            88999863   42    69999999999999987  554443

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type

Probab=95.48  E-value=0.035  Score=45.59  Aligned_cols=66  Identities=15%  Similarity=0.241  Sum_probs=50.0

Q ss_pred             cceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCcc---cccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN---HVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPAd---QVVkdL~G~Faf~~~~~  139 (180)
                      .++-.++-|.|.|-..||+++   |. -++.++.=++...|....+.++=+.+   ++++.|+|.|||++++.
T Consensus        92 ~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~  164 (215)
T cd00714          92 GEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISK  164 (215)
T ss_pred             CCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEe
Confidence            378889999999999999987   44 25555555777788776554441111   68999999999999985

This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.

>cd03766 Gn_AT_II_novel Gn_AT_II_novel

Probab=94.36  E-value=0.032  Score=45.22  Aligned_cols=59  Identities=12%  Similarity=0.159  Sum_probs=45.5

Q ss_pred             cceeEeecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~  139 (180)
                      +.+..+|-|.|.|-..|++      +.++.-++.++|+.-.+. .=-.-++++.|+|.|||+++|.
T Consensus        72 ~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~  130 (181)
T cd03766          72 TGNVLQWNGELYNIDGVED------EENDTEVIFELLANCSSE-SQDILDVLSSIEGPFAFIYYDA  130 (181)
T ss_pred             CCEEEEECCEEECcccccC------CCCHHHHHHHHHHHHhhh-HHHHHHHHHhcccceEEEEEeC
Confidence            4688899999999999987      566777888888764421 0001258999999999999987

This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet

>PF13522 GATase_6: Glutamine amidotransferase domain

Probab=94.31  E-value=0.045  Score=41.95  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=47.1

Q ss_pred             cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~  139 (180)
                      .+|...+-|.|+|-..||++++.    -++.++.-++...+   ++.|    .++++.++|.|+|.+++.
T Consensus        40 g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li---~~~g----~~~l~~l~G~~a~~~~~~  102 (133)
T PF13522_consen   40 GRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALI---HRWG----EEALERLDGAFAFAVYDK  102 (133)
T ss_pred             CCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHH---HHHH----HHHHHHhcCceEEEEEEc
Confidence            56889999999999999999987    24456666666666   3334    888899999999999985

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase

Probab=93.88  E-value=0.15  Score=48.07  Aligned_cols=58  Identities=21%  Similarity=0.336  Sum_probs=48.4

Q ss_pred             ceeEeecccccChHHHHHhh---CCc-ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030267           75 EIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        75 DIfClF~G~LeNL~~L~qQY---GLs-K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~  139 (180)
                      .+-.+|-|.|.|-..|++++   |.. ++.+++-++.++|+.-   |    .+++++|+|.|||++++-
T Consensus        69 ~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~---G----~~~~~~l~G~fa~~i~d~  130 (589)
T TIGR03104        69 GLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHAW---G----RDCVSRFNGMFAFAIWER  130 (589)
T ss_pred             CEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHH---H----HHHHHHhhcceEEEEEeC
Confidence            46778999999999999987   432 6777888899999864   3    479999999999999876

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=92.46  E-value=0.21  Score=46.68  Aligned_cols=65  Identities=14%  Similarity=0.211  Sum_probs=46.8

Q ss_pred             cceeEeecccccChHHHHHhhC---Cc-ccccceeehHHHHHHhHhcCCCCcc----cccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQYG---LA-KSANEVILVIEAYKALRDRAPYPPN----HVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYG---Ls-K~aNEv~lVIEAYRTLRDRgPYPAd----QVVkdL~G~Faf~~~~~  139 (180)
                      ..+..++-|.|.|...||+++.   .. ++.++.=++.-.|....++|+ ...    ++++.|+|.|+|++++.
T Consensus        92 ~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~-~~~~ai~~~~~~l~G~~a~~i~~~  164 (607)
T TIGR01135        92 GRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGG-DLLEAVQKALKQLRGAYALAVLHA  164 (607)
T ss_pred             CCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCceEEEEEec
Confidence            4578899999999999999973   21 333444455566766555443 111    68999999999999986

The member from Methanococcus jannaschii contains an intein.

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=91.16  E-value=0.62  Score=43.55  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=47.8

Q ss_pred             cceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~~~  139 (180)
                      +++..++-|.|.|-..||+++   |. -++.++.=++.-.|....+-|+=+.   .++++.|+|.|+|++++.
T Consensus        93 ~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~  165 (604)
T PRK00331         93 GRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDK  165 (604)
T ss_pred             CCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEec
Confidence            678889999999999999987   33 2444554455667766533342111   368999999999999996

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

Probab=89.96  E-value=0.72  Score=39.09  Aligned_cols=67  Identities=16%  Similarity=0.214  Sum_probs=43.8

Q ss_pred             ceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCcc----------------------cccccc
Q 030267           75 EIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN----------------------HVVGHL  128 (180)
Q Consensus        75 DIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPAd----------------------QVVkdL  128 (180)
                      ++..++-|.|.|...||+++   |. -++.++.=++.-.|..+...+-.|.+                      .+++.|
T Consensus       104 ~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l  183 (249)
T cd01907         104 DIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADL  183 (249)
T ss_pred             CEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccC
Confidence            88999999999999999876   32 13333333334444433322222322                      588999


Q ss_pred             cCceEEEEEecch
Q 030267          129 SGTNLVRFLFIGE  141 (180)
Q Consensus       129 ~G~Faf~~~~~g~  141 (180)
                      +|.|+|++.+-..
T Consensus       184 ~G~~a~~~~~~~~  196 (249)
T cd01907         184 DGPFTIIVGTPDG  196 (249)
T ss_pred             CCCEEEEEEeCCe
Confidence            9999999987643

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=86.65  E-value=0.93  Score=43.13  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             cceeEeecccccChHHHHHhh---CC---cccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~~~  139 (180)
                      +++-.++-|.|.|-..||+++   |.   +.+-.|+++  -.|....+.|.-+.   .+++++|+|.|+|++++.
T Consensus       123 ~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~--~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~~  195 (640)
T PTZ00295        123 KRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIA--NLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIHK  195 (640)
T ss_pred             CCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHH--HHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEEe
Confidence            578889999999999999985   32   455556554  33443333442111   258999999999999985

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=86.54  E-value=1.7  Score=42.20  Aligned_cols=67  Identities=19%  Similarity=0.370  Sum_probs=46.2

Q ss_pred             ccceeEeecccccChHHHHHhh---CC---cccccceeehH-H-HHHHhHhc-CCCCcc----cccccccCceEEEEEec
Q 030267           73 KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVI-E-AYKALRDR-APYPPN----HVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        73 ~DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVI-E-AYRTLRDR-gPYPAd----QVVkdL~G~Faf~~~~~  139 (180)
                      ...|..++-|.|.|-..||+++   |-   |.+-.|++.-+ + .|+.+... |++...    +++++|+|.|+|++++.
T Consensus       114 ~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~  193 (680)
T PLN02981        114 GNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSP  193 (680)
T ss_pred             CCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEec
Confidence            3578999999999999999986   32   45556766532 2 25443322 212222    48999999999999984

>PRK07847 amidophosphoribosyltransferase; Provisional

Probab=86.30  E-value=0.85  Score=43.37  Aligned_cols=68  Identities=16%  Similarity=0.118  Sum_probs=45.8

Q ss_pred             ccceeEeecccccChHHHHHhh---CC------cccccceeehHHHHHHhHhcCCCCc--ccccccccCceEEEEEecc
Q 030267           73 KDEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALRDRAPYPP--NHVVGHLSGTNLVRFLFIG  140 (180)
Q Consensus        73 ~DDIfClF~G~LeNL~~L~qQY---GL------sK~aNEv~lVIEAYRTLRDRgPYPA--dQVVkdL~G~Faf~~~~~g  140 (180)
                      ..++-..+-|.|.|-..||++.   |.      -++.++.=++...|....+.+.+..  .++++.++|.|+|++++-+
T Consensus       118 ~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~~  196 (510)
T PRK07847        118 GGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDEH  196 (510)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEECC
Confidence            4678899999999999999987   42      2344433344444544333332211  2489999999999999853

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=86.11  E-value=0.86  Score=44.17  Aligned_cols=77  Identities=18%  Similarity=0.213  Sum_probs=52.4

Q ss_pred             cceeEeecccccChHHHHHhh---C--C-cccccceee-hHH-HHHHhHhcCCCCc----ccccccccCceEEEEEec--
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---G--L-AKSANEVIL-VIE-AYKALRDRAPYPP----NHVVGHLSGTNLVRFLFI--  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---G--L-sK~aNEv~l-VIE-AYRTLRDRgPYPA----dQVVkdL~G~Faf~~~~~--  139 (180)
                      ..|-.++-|.|.|-..||+++   |  + |.+-+|++. .|| .|+   +.|....    -+++++|+|.|||++++.  
T Consensus       125 ~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~---~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~  201 (670)
T PTZ00394        125 GEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYT---RKGIHNFADLALEVSRMVEGSYALLVKSVYF  201 (670)
T ss_pred             CCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHccCceEEEEEecCC
Confidence            568889999999999999985   3  2 567778776 343 353   2343222    168999999999999874  


Q ss_pred             ch--hhhhcchhHHHH
Q 030267          140 GE--SLLMDMLPLLMM  153 (180)
Q Consensus       140 g~--~~~~d~l~~~~~  153 (180)
                      ++  ...-|.-||.+-
T Consensus       202 ~~~l~~~Rd~~PL~iG  217 (670)
T PTZ00394        202 PGQLAASRKGSPLMVG  217 (670)
T ss_pred             CCEEEEEEcCCceEEE
Confidence            22  233466666443

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type

Probab=86.09  E-value=0.81  Score=38.32  Aligned_cols=71  Identities=10%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhc-CCCCc-ccccccccCceEEEEEecchhhh
Q 030267           74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDR-APYPP-NHVVGHLSGTNLVRFLFIGESLL  144 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDR-gPYPA-dQVVkdL~G~Faf~~~~~g~~~~  144 (180)
                      .++..++-|.|+|-..|+++++.    -++.++.-++..+|...-++ .+.-| .++++.++|.|+|++++-+..++
T Consensus        94 ~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~~~l~~  170 (252)
T cd00715          94 GGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTADGLIA  170 (252)
T ss_pred             CcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEECCEEEE
Confidence            56888999999999999998742    13445555555666554332 11111 25889999999999988744443

This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.

>PRK08525 amidophosphoribosyltransferase; Provisional

Probab=83.61  E-value=0.96  Score=41.85  Aligned_cols=71  Identities=14%  Similarity=0.168  Sum_probs=45.9

Q ss_pred             cceeEeecccccChHHHHHhh---CCc-ccccceeehHHHHHHhHhcCCCC--cccccccccCceEEEEEecchhhhh
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGTNLVRFLFIGESLLM  145 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GLs-K~aNEv~lVIEAYRTLRDRgPYP--AdQVVkdL~G~Faf~~~~~g~~~~~  145 (180)
                      .++-.+|-|.|.|-..||+.+   |.. ++.++.=++...|....+ +...  .-++++.|+|.|||++++-+..+..
T Consensus        95 g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~~ea~~~~~~~L~G~fa~vi~~~~~l~~~  171 (445)
T PRK08525         95 GEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESLKDRIIEALKKIIGAYCLVLLSRSKMFAI  171 (445)
T ss_pred             CCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCCceEEEEEeCCEEEEE
Confidence            578889999999999999886   321 333333344555543321 1110  1257899999999999886544443

>PRK07349 amidophosphoribosyltransferase; Provisional

Probab=82.93  E-value=1.5  Score=41.59  Aligned_cols=79  Identities=15%  Similarity=0.058  Sum_probs=51.4

Q ss_pred             cceeEeecccccChHHHHHhh---CCc-ccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEEecchh-hhh
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFLFIGES-LLM  145 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GLs-K~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~~~g~~-~~~  145 (180)
                      .++-..+-|.|.|-..||+++   |.. ++.++.=++.-.|....++|.=+.   .++++.|+|.|+|++++-+.. ..-
T Consensus       128 g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~~~l~aaR  207 (500)
T PRK07349        128 GPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTPEGLMGVR  207 (500)
T ss_pred             CCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeCCEEEEEE
Confidence            468889999999999999986   432 334433344455554444442122   368899999999999765333 334


Q ss_pred             cch---hHHH
Q 030267          146 DML---PLLM  152 (180)
Q Consensus       146 d~l---~~~~  152 (180)
                      |-.   ||.+
T Consensus       208 Dp~GiRPL~~  217 (500)
T PRK07349        208 DPNGIRPLVI  217 (500)
T ss_pred             CCCCCCCeEE
Confidence            555   6644

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=81.06  E-value=0.25  Score=48.19  Aligned_cols=102  Identities=21%  Similarity=0.251  Sum_probs=72.7

Q ss_pred             cceeEeecccccChHHHHHhhC------Cccccccee--ehHHHHHHhHhcCCCCc-ccccccccCceEEEEEecch--h
Q 030267           74 DEIFCLFEGALDNLGSLRQQYG------LAKSANEVI--LVIEAYKALRDRAPYPP-NHVVGHLSGTNLVRFLFIGE--S  142 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYG------LsK~aNEv~--lVIEAYRTLRDRgPYPA-dQVVkdL~G~Faf~~~~~g~--~  142 (180)
                      +.|--+--|.|||-..||..|=      .|.+-+||+  ++=+.|+..    ..=| -++++.|+|+||+++.+.+.  .
T Consensus        92 ~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~----~~~a~~~~l~~l~Gsyal~~~~~~~p~~  167 (597)
T COG0449          92 GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTS----LLEAVKKVLKRLEGSYALLCTHSDFPDE  167 (597)
T ss_pred             CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhH----HHHHHHHHHHHhcceeEEEEEecCCCCe
Confidence            7788899999999999998875      278888876  444556542    1112 35899999999999999854  2


Q ss_pred             h--hhcchhHHHHHHhHHHHHhhhhhhheeecccccccc
Q 030267          143 L--LMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQQLE  179 (180)
Q Consensus       143 ~--~~d~l~~~~~~~c~k~~a~~~~~~~~~~~~~~~~~~  179 (180)
                      +  .--.=||+|-.|....|-||-..-.+++...-.-||
T Consensus       168 i~~ar~~sPL~iG~g~~e~f~aSD~~a~l~~t~~~~~l~  206 (597)
T COG0449         168 LVAARKGSPLVIGVGEGENFLASDVSALLNFTRRFVYLE  206 (597)
T ss_pred             EEEEcCCCCeEEEecCCcceEecChhhhhhhhceEEEeC
Confidence            2  224557778888888888887776666555444443

>PRK08341 amidophosphoribosyltransferase; Provisional

Probab=80.21  E-value=0.95  Score=42.18  Aligned_cols=68  Identities=25%  Similarity=0.402  Sum_probs=46.3

Q ss_pred             cceeEeecccccChHHHHHhh---CC---ccccccee--ehHHHHHHhHhcCCC-C-cccccccccCceEEEEEecchhh
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVI--LVIEAYKALRDRAPY-P-PNHVVGHLSGTNLVRFLFIGESL  143 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~--lVIEAYRTLRDRgPY-P-AdQVVkdL~G~Faf~~~~~g~~~  143 (180)
                      ..|-..+-|.|.|-..||+++   |.   +-+-+|++  ++.+.|+   +.|.. . -.++++.|+|.|+|++++-+..+
T Consensus        94 g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~---~~~~~~~ai~~~~~~l~G~yal~i~~~~~l~  170 (442)
T PRK08341         94 YKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYS---ETGDEFEAMREVFNEVKGAYSVAILFDGKII  170 (442)
T ss_pred             CCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHH---hcCCHHHHHHHHHHhccCceEEEEEECCEEE
Confidence            467789999999999999986   32   35566776  3345553   33321 0 12478999999999998765443


Q ss_pred             h
Q 030267          144 L  144 (180)
Q Consensus       144 ~  144 (180)
                      .
T Consensus       171 a  171 (442)
T PRK08341        171 V  171 (442)
T ss_pred             E
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 65/220 (29%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAY--- 57
              + S   +   + ++ +        + +  L    L      V   V + + + Y   
Sbjct: 42  PKSILSKEEI---DHIIMS----KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 58  --THQNESPLRQRSFAVKDEIFC---LFEG----------------ALDN-LGSLRQQ-- 93
               + E   RQ S   +  I     L+                   L   L  LR    
Sbjct: 95  MSPIKTEQ--RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 94  ---YGLA---KSANEVILVIEAYKALRDRA--PYPPNHV----VGHLSGTNLVRFLFIGE 141
               G+    K+     + ++                 +    + + +           E
Sbjct: 153 VLIDGVLGSGKT----WVALD---VCLSYKVQCKMDFKIFWLNLKNCNSP---------E 196

Query: 142 SLLMDMLPLLMMLTCSKVLAASHLL-LSLKVVSSQQQLED 180
           ++L  +  LL  +  +    + H   + L++ S Q +L  
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 33/242 (13%), Positives = 64/242 (26%), Gaps = 90/242 (37%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTP------SPKTTST--ALV-------DRFLQTNSSAVS 46
             +    +   P++L       P      +P+  S     +       D +   N   ++
Sbjct: 304 KSLLLKYLDCRPQDL-------PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 47  VQVGDNVTLAYTHQNESPLRQR--SFAV--KD-----EIFCLF---------EGALDNL- 87
                 +  +      +  R+     +V          +  L             ++ L 
Sbjct: 357 ----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 88  -GSL------RQQYGL--------AKSANEVIL---VIEAYKALR-----DRAP-----Y 119
             SL           +         K  NE  L   +++ Y   +     D  P     Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 120 PPNHVVGHLSGT------NLVR--FL---FIGESLLMDMLPLLMMLTCSKVLAASHLLLS 168
             +H+  HL          L R  FL   F+ + +  D          +   +  + L  
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA------WNASGSILNTLQQ 526

Query: 169 LK 170
           LK
Sbjct: 527 LK 528

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	95.84
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	95.53
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	94.49
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	94.3
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	93.88
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	89.67
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	88.65

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*

Probab=95.84  E-value=0.0081  Score=48.33  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             cceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCcc---cccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN---HVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPAd---QVVkdL~G~Faf~~~~~  139 (180)
                      +++...+-|.|.|...||+++   |. -++.++.-++..+|....++|+-+.+   ++++.|+|.|+|+++|.
T Consensus        91 ~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~  163 (240)
T 1xff_A           91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDS  163 (240)
T ss_dssp             TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEET
T ss_pred             CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEec
Confidence            789999999999999999876   32 24445555556677766555542222   68999999999999984

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=95.53  E-value=0.013  Score=52.74  Aligned_cols=63  Identities=13%  Similarity=0.083  Sum_probs=49.9

Q ss_pred             cceeEeecccccChHHHHHhhCC-cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecchhh
Q 030267           74 DEIFCLFEGALDNLGSLRQQYGL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESL  143 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYGL-sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g~~~  143 (180)
                      .++.++|-|.|.|-..||++++- -++.++.-+++++|...   |    .++++.|+|.|||++++.++.+
T Consensus        69 ~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~~---g----~~~~~~l~G~fA~~i~d~~~l~  132 (513)
T 1jgt_A           69 APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERY---D----LHAFRLVNGRFATVVRTGDRVL  132 (513)
T ss_dssp             SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHHH---G----GGGGGTCCEEEEEEEEETTEEE
T ss_pred             CCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHHH---h----HHhHhhcCeeEEEEEEECCEEE
Confidence            57999999999999999999742 24555555678888764   3    4699999999999999976533

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=94.49  E-value=0.17  Score=45.88  Aligned_cols=98  Identities=14%  Similarity=0.195  Sum_probs=64.8

Q ss_pred             CCCCcEEEEeCCceEEEEecCCC----CCccccccccccceeEeecccccChHHHHHhhCC---cccccceeehHHHHHH
Q 030267           40 TNSSAVSVQVGDNVTLAYTHQNE----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAYKA  112 (180)
Q Consensus        40 ~~p~avsv~~G~~~~LAYs~~~~----~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGL---sK~aNEv~lVIEAYRT  112 (180)
                      .=|++.-+-..+...|+.+.-..    .--||= ...-..+.++|-|.|.|-..||+++.-   -++.++.-+++.+|..
T Consensus        30 RGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~-~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvil~l~~~  108 (553)
T 1ct9_A           30 RGPDWSGIYASDNAILAHERLSIVDVNAGAQPL-YNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQE  108 (553)
T ss_dssp             GCBTEEEEEECSSEEEEEEECCCSCTTTCCSSE-ECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHH
T ss_pred             cCCCcccEEEECCEEEEEEeeeeeCCCCCCCCe-EeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcHHHHHHHHHH
Confidence            44677777776667777763211    112331 112235889999999999999998742   2344444566788875


Q ss_pred             hHhcCCCCcccccccccCceEEEEEec--chhhhh
Q 030267          113 LRDRAPYPPNHVVGHLSGTNLVRFLFI--GESLLM  145 (180)
Q Consensus       113 LRDRgPYPAdQVVkdL~G~Faf~~~~~--g~~~~~  145 (180)
                      -   |    .++++.|+|.|||++++.  +..++.
T Consensus       109 ~---g----~~~l~~l~G~fa~~i~d~~~~~l~~a  136 (553)
T 1ct9_A          109 K---G----PEFLDDLQGMFAFALYDSEKDAYLIG  136 (553)
T ss_dssp             H---T----TTTGGGCCEEEEEEEEETTTTEEEEE
T ss_pred             H---H----HHHHHhCCccEEEEEEECCCCEEEEE
Confidence            3   4    469999999999999996  444443

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=94.30  E-value=0.16  Score=46.16  Aligned_cols=64  Identities=16%  Similarity=0.240  Sum_probs=46.5

Q ss_pred             cceeEeecccccChHHHHHhh---CC---cccccceeehHHHHHHhHhcCCCCcc---cccccccCceEEEEEec
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPN---HVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVIEAYRTLRDRgPYPAd---QVVkdL~G~Faf~~~~~  139 (180)
                      +++...+-|.|+|...||+++   |.   +.+-+|+  +...|....++|+-+.+   ++++.|+|.|+|++++.
T Consensus        91 ~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEv--i~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~  163 (608)
T 2bpl_A           91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEV--IAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDS  163 (608)
T ss_dssp             TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHH--HHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEET
T ss_pred             CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHH--HHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEec
Confidence            788999999999999999876   32   3445554  44555544444541111   58999999999999997

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=93.88  E-value=0.065  Score=48.00  Aligned_cols=60  Identities=18%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             cceeEeecccccChH---HHHHhhCC-cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecch
Q 030267           74 DEIFCLFEGALDNLG---SLRQQYGL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGE  141 (180)
Q Consensus        74 DDIfClF~G~LeNL~---~L~qQYGL-sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g~  141 (180)
                      |.-+++. |.|.|-.   .||+++.- -++.++.-+++.+|...   |    .++++.++|.|||++++..+
T Consensus        50 ~~~~~l~-GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~~---g----~~~l~~l~G~fa~~i~d~~~  113 (503)
T 1q15_A           50 RGTAYLI-GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRL---G----ANALALAEGDFCFFIDEPNG  113 (503)
T ss_dssp             SSEEEEE-ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHH---C----GGGGGGCCSSEEEEEECTTS
T ss_pred             CCeEEEE-EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHHH---H----HHHHHHcCEEEEEEEEeCCC
Confidence            5556666 9999999   99998841 24556666778888753   4    46999999999999999744

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*

Probab=89.67  E-value=0.26  Score=44.11  Aligned_cols=69  Identities=14%  Similarity=0.198  Sum_probs=47.6

Q ss_pred             ceeEeecccccChHHHHHhhC-----CcccccceeehHHHHHHh-HhcCC---CCcc------cccccccCceEEEEEec
Q 030267           75 EIFCLFEGALDNLGSLRQQYG-----LAKSANEVILVIEAYKAL-RDRAP---YPPN------HVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        75 DIfClF~G~LeNL~~L~qQYG-----LsK~aNEv~lVIEAYRTL-RDRgP---YPAd------QVVkdL~G~Faf~~~~~  139 (180)
                      .+...+-|.|.|-..||++..     --++.++.-++..+|... +..|+   .+.|      ++++.++|.|+|++++.
T Consensus        95 ~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l~G~fa~v~~~~  174 (504)
T 1ecf_A           95 GITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMII  174 (504)
T ss_dssp             CEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEEET
T ss_pred             CEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhcCccceEEEEEc
Confidence            488899999999999998752     234555555566677554 33343   2222      57999999999999876


Q ss_pred             chhh
Q 030267          140 GESL  143 (180)
Q Consensus       140 g~~~  143 (180)
                      |..+
T Consensus       175 ~~~l  178 (504)
T 1ecf_A          175 GHGM  178 (504)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            5433

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*

Probab=88.65  E-value=0.12  Score=45.49  Aligned_cols=71  Identities=15%  Similarity=0.160  Sum_probs=46.5

Q ss_pred             cceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCc-ccccccccCceEEEEEecchhhh
Q 030267           74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP-NHVVGHLSGTNLVRFLFIGESLL  144 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPA-dQVVkdL~G~Faf~~~~~g~~~~  144 (180)
                      .++-..+-|.|.|-..||++.   |. -++.++.-++..+|....++.++.| .++++.++|.|+|++++-+..+.
T Consensus        95 g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G~fa~~i~d~~~l~~  170 (459)
T 1ao0_A           95 GSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIV  170 (459)
T ss_dssp             CCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEECSSEEEE
T ss_pred             CcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhccceEEEEEeCCEEEE
Confidence            458889999999999999986   32 2344444455566653221111111 36899999999999998544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1jgta2	206	beta-Lactam synthetase {Streptomyces clavuligerus	96.36
d1ct9a2	192	Asparagine synthetase B, N-terminal domain {Escher	95.92
d1q15a2	204	beta-Lactam synthetase {Pectobacterium carotovorum	93.37
d1xffa_	238	Glucosamine 6-phosphate synthase, N-terminal domai	91.56
d1gph12	234	Glutamine PRPP amidotransferase, N-terminal domain	91.03

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.36  E-value=0.0017  Score=51.12  Aligned_cols=67  Identities=13%  Similarity=0.095  Sum_probs=53.6

Q ss_pred             cccccceeEeecccccChHHHHHhhCCc-ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecchhhh
Q 030267           70 FAVKDEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLL  144 (180)
Q Consensus        70 F~~~DDIfClF~G~LeNL~~L~qQYGLs-K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g~~~~  144 (180)
                      +.+ ++.--+|-|.|.|-..|++++|.. ++..+.=+++++|+..   |    .+-++.|+|.|+|++++..+.++
T Consensus        63 ~~~-~~~~~v~NGeIyN~~eL~~~lg~~~~s~sDtEvil~l~~~~---G----~~~l~~l~G~Fa~vi~d~~~l~l  130 (206)
T d1jgta2          63 LTG-APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERY---D----LHAFRLVNGRFATVVRTGDRVLL  130 (206)
T ss_dssp             CSS-SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHHH---G----GGGGGTCCEEEEEEEEETTEEEE
T ss_pred             cCC-CCEEEEEEEEecCHHHHHHHhCCCCCCCCchHHHHHHhhhh---C----HHHHHHHHhhhheeeeecceEEE
Confidence            444 567889999999999999999995 6666666788999865   4    36899999999999998755443

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.025  Score=42.76  Aligned_cols=91  Identities=15%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             CCcEEEEeCCceEEEEecCCC---CCccccccccccceeEeecccccChHHHHHhhCC---cccccceeehHHHHHHhHh
Q 030267           42 SSAVSVQVGDNVTLAYTHQNE---SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAYKALRD  115 (180)
Q Consensus        42 p~avsv~~G~~~~LAYs~~~~---~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGL---sK~aNEv~lVIEAYRTLRD  115 (180)
                      |++..+...+...|..+.-..   +.-.+-.+..-+++..+|-|.|.|-..|++++..   -++.++.-+++++|+.-  
T Consensus        32 pD~~~~~~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~sDtevll~~~~~~--  109 (192)
T d1ct9a2          32 PDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEK--  109 (192)
T ss_dssp             BTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHHH--
T ss_pred             CCCCCeEEeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchhHHHHHHHhcCcccCCCCcHHHHHHHhhhc--
Confidence            677777776666666653211   1111112234467889999999999999999854   34567888888888753  


Q ss_pred             cCCCCcccccccccCceEEEEEec
Q 030267          116 RAPYPPNHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus       116 RgPYPAdQVVkdL~G~Faf~~~~~  139 (180)
                       |    ...++.|+|.|||++++.
T Consensus       110 -g----~~~~~~l~G~fa~~i~d~  128 (192)
T d1ct9a2         110 -G----PEFLDDLQGMFAFALYDS  128 (192)
T ss_dssp             -T----TTTGGGCCEEEEEEEEET
T ss_pred             -c----hhhhhhhhhheEEEEEec
Confidence             3    347899999999999987

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=93.37  E-value=0.043  Score=43.08  Aligned_cols=62  Identities=16%  Similarity=-0.027  Sum_probs=50.7

Q ss_pred             ccccceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030267           71 AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI  139 (180)
Q Consensus        71 ~~~DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~  139 (180)
                      +-.+..-.+|-|.|=|-..||++.   |. .++.++.=+++++|+..-       .+.++.|+|-|||.+++-
T Consensus        45 ~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvll~~~~~~G-------~~~l~~l~G~Faf~i~~~  110 (204)
T d1q15a2          45 CEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLG-------ANALALAEGDFCFFIDEP  110 (204)
T ss_dssp             EECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHHC-------GGGGGGCCSSEEEEEECT
T ss_pred             ccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHHHHHHHHHH-------HHHHHhhCCceEEEEecC
Confidence            345777889999999999999964   43 467788888999999865       468999999999987664

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.14  Score=39.00  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=50.6

Q ss_pred             cccceeEeecccccChHHHHHhhC---C-cccccceeehHHHHHHhHhcCCCCcc---cccccccCceEEEEEecc
Q 030267           72 VKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPPN---HVVGHLSGTNLVRFLFIG  140 (180)
Q Consensus        72 ~~DDIfClF~G~LeNL~~L~qQYG---L-sK~aNEv~lVIEAYRTLRDRgPYPAd---QVVkdL~G~Faf~~~~~g  140 (180)
                      ..+++..++-|.|.|-..|++.+-   - -++.++.-++.+.|..+.+.+.-+-+   ++++.++|.|+|++++..
T Consensus        89 ~~~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l~~~~~~~~~~~~e~i~~~~~~l~G~~a~~i~~~~  164 (238)
T d1xffa_          89 VSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSR  164 (238)
T ss_dssp             EETTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETT
T ss_pred             cCCcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhhhhHhhhcCCCHHHHHHHHHHHccCchhhhhhhcc
Confidence            347889999999999999998763   2 13455555666777666655554432   578999999999998863

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.03  E-value=0.022  Score=43.33  Aligned_cols=65  Identities=15%  Similarity=0.176  Sum_probs=44.0

Q ss_pred             cceeEeecccccChHHHHHhhC---C-cccccceeehHHHHHHhHhcCCCCc----ccccccccCceEEEEEecch
Q 030267           74 DEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPP----NHVVGHLSGTNLVRFLFIGE  141 (180)
Q Consensus        74 DDIfClF~G~LeNL~~L~qQYG---L-sK~aNEv~lVIEAYRTLRDRgPYPA----dQVVkdL~G~Faf~~~~~g~  141 (180)
                      .++..+|-|.|.|-..||+.+-   - ..+.++.-++...|+..   +..-.    .+++++|+|.|+|++++-++
T Consensus        95 ~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~~~~~~---~~~~~~~ai~~~~~~l~G~~a~~i~~~~~  167 (234)
T d1gph12          95 GSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRS---GHFTLKDQIKNSLSMLKGAYAFLIMTETE  167 (234)
T ss_dssp             CCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHHHHHTC---CCSSHHHHHHHHHTTCCEEEEEEEECSSC
T ss_pred             ceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHHHHHHH---hhhhHHHHHHHHHHhcCCceEEEEeecCc
Confidence            5799999999999999988863   2 23444444444444332   11111    25889999999999987655