Citrus Sinensis ID: 030269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHcccHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHcccEEEEEcccccccHHHHHcccccccccccHHHHHHHHccccccccEEEEEEEcccEEEEEccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccccccccccccccEEEEEEEEccccEEEcccEEEEccccccccccccccccccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHcccEEEEEEccccccHHHHHHHcccccccccHHHHHHHHHcccccccEEEEEEEccccEEEEccHHHHHcccccccc
Coil and Loop (DISEMBL)
maaapclhygtpasikiqqkqqptrNWMMMQGLrrrngkaskrvgvtncsgnsgieigdfiggdllkpdlgrwLSDVEKHKAIAiytpheggyegryLNRLRYLGYYFLdlsarglgdpettltkvypvcpvlskseLQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAgltqegaa
Flexible Loop (DISEMBL)
maaapclhygtpasikiqqkqqpTRNWMMMQGLRrrngkaskrvgvtncsgnsgieigdfigGDLLKPDLGRWLSDVEKHKAIaiytpheggyegRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLallptlrpKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Low Complexity Region (SEG)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEggyegrylnrlrylgyyflDLSARGLGDPETTLTKVYPVCPVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Disordered region (IsUnstruct)
*******************************************VGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG*******
Disordered Region (DISOPRED)
*********GTPASI************************************NSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEI*********
Disordered Region (DISEMBL)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Disordered Region (DISPRO)
*****CLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
B8HUU1	158	NAD(P)H-quinone oxidoredu	yes	no	0.561	0.639	0.346	4e-16
B7JYJ3	158	NAD(P)H-quinone oxidoredu	yes	no	0.55	0.626	0.337	3e-15
Q5N0W6	158	NAD(P)H-quinone oxidoredu	yes	no	0.561	0.639	0.333	1e-14
Q31L05	158	NAD(P)H-quinone oxidoredu	yes	no	0.561	0.639	0.333	1e-14
Q8YPH8	162	NAD(P)H-quinone oxidoredu	yes	no	0.538	0.598	0.335	1e-14
Q3MFC2	162	NAD(P)H-quinone oxidoredu	yes	no	0.538	0.598	0.335	4e-14
B2ITQ6	158	NAD(P)H-quinone oxidoredu	yes	no	0.538	0.613	0.321	4e-13
B1WYX9	158	NAD(P)H-quinone oxidoredu	yes	no	0.55	0.626	0.317	5e-13
B1XK97	157	NAD(P)H-quinone oxidoredu	yes	no	0.55	0.630	0.301	1e-12
Q110A6	158	NAD(P)H-quinone oxidoredu	yes	no	0.533	0.607	0.323	2e-12

>sp|B8HUU1|NDHN_CYAP4 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhN PE=3 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 46/147 (31%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           +++ D+EK  A+ IY P EGG+EGRY  RLR  GY  L +SA GLGD  + LT+V+ V P
Sbjct: 9   QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRP 68

Query: 132 V----------------------------------------------LSKSELQFLALLP 145
                                                          LS+ EL +L++LP
Sbjct: 69  PHLGKSTQGNTDWGVKTFFLPPLVNYHLENLPPKARGLVLWMIDGKRLSRQELAYLSILP 128

Query: 146 TLRPKVRVIAECGNWRKFMWKPLKEIA 172
              PKV+++ E G  R+F W+PLKE+A
Sbjct: 129 AQEPKVKIVIELGGDRQFRWQPLKEMA 155

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|B7JYJ3|NDHN_CYAP8 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 8801) GN=ndhN PE=3 SV=1

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 46/145 (31%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
           ++  +EK  ++A+Y P EGG+EGRY  RLR  GY+   L+ARGLGD    L  V+ V P 
Sbjct: 10  FIRALEKSGSLAVYAPLEGGFEGRYQRRLRTNGYHTFSLTARGLGDVSAYLMGVHGVRPP 69

Query: 132 ---------------------------------------------VLSKSELQFLALLPT 146
                                                        +LS++EL++LA LPT
Sbjct: 70  HLGKKNIGQEAAVGPVYFVPPIAAYQLETLPPKSKGLVLWILEGFILSQTELEYLANLPT 129

Query: 147 LRPKVRVIAECGNWRKFMWKPLKEI 171
           L P+++V+ E G  R F WKPL E+
Sbjct: 130 LEPRLKVVIELGGERYFSWKPLPEV 154

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5N0W6|NDHN_SYNP6 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhN PE=3 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 64/147 (43%), Gaps = 46/147 (31%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++L  +E+  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDP   L  ++ V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 132 ----------------------------------------------VLSKSELQFLALLP 145
                                                         VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 146 TLRPKVRVIAECGNWRKFMWKPLKEIA 172
              P+++V+ E G  R F W+PL  +A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVA 155

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q31L05|NDHN_SYNE7 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942) GN=ndhN PE=3 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 64/147 (43%), Gaps = 46/147 (31%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++L  +E+  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDP   L  ++ V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 132 ----------------------------------------------VLSKSELQFLALLP 145
                                                         VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 146 TLRPKVRVIAECGNWRKFMWKPLKEIA 172
              P+++V+ E G  R F W+PL  +A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVA 155

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8YPH8|NDHN_NOSS1 NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ndhN PE=3 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 64/143 (44%), Gaps = 46/143 (32%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-- 131
           + D+EK  ++ +Y P EGG+EGRY  RLR  GY  L  +ARGLGD    LT V+ V P  
Sbjct: 11  IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPH 70

Query: 132 --------------------------------------------VLSKSELQFLALLPTL 147
                                                       +LS  E++FL  LP+L
Sbjct: 71  LGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTSLPSL 130

Query: 148 RPKVRVIAECGNWRKFMWKPLKE 170
            P+V+V+ E G  R F WK LK+
Sbjct: 131 EPRVKVVVERGGDRTFRWKALKD 153

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3MFC2|NDHN_ANAVT NAD(P)H-quinone oxidoreductase subunit N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhN PE=3 SV=1

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 63/143 (44%), Gaps = 46/143 (32%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-- 131
           + D+EK  ++ +Y P EGG+EGRY  RLR  GY  L  +ARGLGD    LT V+ V P  
Sbjct: 11  IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPH 70

Query: 132 --------------------------------------------VLSKSELQFLALLPTL 147
                                                       +LS  E++FL  LP L
Sbjct: 71  LGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTDLPKL 130

Query: 148 RPKVRVIAECGNWRKFMWKPLKE 170
            P+V+V+ E G  R F WK LK+
Sbjct: 131 EPRVKVVVERGGDRTFRWKALKD 153

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B2ITQ6|NDHN_NOSP7 NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhN PE=3 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 46/143 (32%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-- 131
           + D+EK  A+ +Y P EGGYEGRY  RLR  GY  L ++A+GLGD    LT+++ V P  
Sbjct: 11  IRDLEKFGALGVYVPLEGGYEGRYQRRLRAAGYTTLHITAKGLGDVAAYLTRIHGVRPPH 70

Query: 132 --------------------------------------------VLSKSELQFLALLPTL 147
                                                       +LS  EL++L  LP L
Sbjct: 71  LGKKSTGSGAAVGQVYYLPPILDSHLEQLPPKSKGLVLWIIEGHILSNEELEYLTNLPQL 130

Query: 148 RPKVRVIAECGNWRKFMWKPLKE 170
            P+V+V+ E G  R F W  L++
Sbjct: 131 EPRVKVVIERGGDRAFRWTSLEK 153

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B1WYX9|NDHN_CYAA5 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain ATCC 51142) GN=ndhN PE=3 SV=1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 46/145 (31%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
           ++  +EK  A+ +Y P EGG+EGRY  RLR  GY  L L+ARGLGD    L  V+ V P 
Sbjct: 10  FVRALEKSGALGVYAPLEGGFEGRYQRRLRTNGYDSLSLTARGLGDVSAYLMGVHGVRPP 69

Query: 132 ---------------------------------------------VLSKSELQFLALLPT 146
                                                        +LSK+EL++L  LP 
Sbjct: 70  HLGKKNIGQGAAVGPIYFVPPIAAYQLESLSPQSKGLVLWILEGYILSKAELEYLVSLPQ 129

Query: 147 LRPKVRVIAECGNWRKFMWKPLKEI 171
             P+++V+ E G  R F W+PL+ +
Sbjct: 130 QEPRIKVVVELGGERYFRWEPLENL 154

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B1XK97|NDHN_SYNP2 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhN PE=3 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 47/146 (32%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
           ++  VEK  A+A+Y P EGG+EGRY+ RLR  GY  ++L+ARGLGD    LT+ + + P 
Sbjct: 10  FIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYLTQYHGIRPP 69

Query: 132 ----------------------------------------------VLSKSELQFLALLP 145
                                                         VLS+ E ++L  L 
Sbjct: 70  HLGKKDIAGSGAAVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQEQEYLVSLT 129

Query: 146 TLRPKVRVIAECGNWRKFMWKPLKEI 171
              P+++V+ E G  R+F +KPL ++
Sbjct: 130 QDNPQIKVVVEMGGDRQFSFKPLADL 155

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q110A6|NDHN_TRIEI NAD(P)H-quinone oxidoreductase subunit N OS=Trichodesmium erythraeum (strain IMS101) GN=ndhN PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 46/142 (32%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-- 131
           + D+EK  ++A+Y P EGG+EGRY  RLR  GY    ++ARGLGD    LT V+ V P  
Sbjct: 11  IRDLEKSGSLAVYPPLEGGFEGRYQRRLRASGYVSESITARGLGDLAMYLTGVHGVRPPH 70

Query: 132 --------------------------------------------VLSKSELQFLALLPTL 147
                                                       +LS  E+++L +LP  
Sbjct: 71  LGKKTVGNGPAVGYVYYVPPIVNYKLEHLPPKAKGLVLWIMEGQILSSQEIEYLTVLPKS 130

Query: 148 RPKVRVIAECGNWRKFMWKPLK 169
            P+V+VI E G  R F W PL+
Sbjct: 131 EPRVKVIVEMGGDRFFRWTPLQ 152

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
118489764	231	unknown [Populus trichocarpa x Populus d	0.955	0.744	0.558	2e-57
356569983	229	PREDICTED: NAD(P)H-quinone oxidoreductas	0.972	0.764	0.542	3e-57
255646756	229	unknown [Glycine max]	0.972	0.764	0.538	8e-57
357460593	224	NAD(P)H-quinone oxidoreductase subunit N	0.972	0.781	0.550	1e-55
224124860	191	predicted protein [Populus trichocarpa]	0.844	0.795	0.596	4e-54
363807976	192	uncharacterized protein LOC100777422 [Gl	0.816	0.765	0.594	4e-52
255584394	226	conserved hypothetical protein [Ricinus	0.966	0.769	0.559	2e-51
359478527	187	PREDICTED: NAD(P)H-quinone oxidoreductas	0.65	0.625	0.673	3e-51
357126207	210	PREDICTED: NAD(P)H-quinone oxidoreductas	0.677	0.580	0.633	8e-51
212720849	272	uncharacterized protein LOC100192546 [Ze	0.688	0.455	0.619	1e-50

>gi|118489764|gb|ABK96682.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 140/222 (63%), Gaps = 50/222 (22%)

Query: 8   HYGTPASIKIQQKQQPT-----------RNWMMMQGLRRRNGKASKRVGVTNCSGNSGIE 56
           H   PASI +  KQQ +           RN M++QG    N  + +R         SGI 
Sbjct: 10  HGRAPASINLHHKQQRSCSPRISVMVGNRNVMLLQGFIYNNNVSKRRPTAGLVVKCSGIG 69

Query: 57  IGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGL 116
           +GDFIGGDL+K D+G+WLSDVE+HKA+AIY PHEGGYEGRYLNRL   GYYFLDLSARGL
Sbjct: 70  LGDFIGGDLVKFDIGQWLSDVEEHKALAIYPPHEGGYEGRYLNRLIRQGYYFLDLSARGL 129

Query: 117 GDPETTLTKVYPVCP---------------------------------------VLSKSE 137
           GDPETTLTKV+PVCP                                       VLSK+E
Sbjct: 130 GDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDFRLEHLPPNAKGLVVWIIEAKVLSKAE 189

Query: 138 LQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGA 179
           LQFLALLPTLRP VRV+AECGNWRKF+WKPLKEIAGLT EGA
Sbjct: 190 LQFLALLPTLRPNVRVVAECGNWRKFVWKPLKEIAGLTAEGA 231

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569983|ref|XP_003553172.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit N-like [Glycine max]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/234 (54%), Positives = 146/234 (62%), Gaps = 59/234 (25%)

Query: 1   MAAAPCLHYGTPA---SIKIQQKQQPTRNWMM---------MQGLRRRNGKA---SKRVG 45
           M++   L YG P    ++   +KQQ  RN  +         M+G R R+G     SKRVG
Sbjct: 1   MSSTASLGYGAPTCFNNVHHTKKQQAMRNSFLSNKHNSVRVMKGWRGRHGNTNNTSKRVG 60

Query: 46  VTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLG 105
           +  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+AIY PHEGGYEGRYL+RL+  G
Sbjct: 61  IVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALAIYPPHEGGYEGRYLSRLKRQG 115

Query: 106 YYFLDLSARGLGDPETTLTKVYPVCP---------------------------------- 131
           YYFLDL+ARGLGDPETTLTK++PVCP                                  
Sbjct: 116 YYFLDLTARGLGDPETTLTKIHPVCPPHVGKQPIARWYFPPEVDYRLEALPPNAKGLVVW 175

Query: 132 -----VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 180
                VLSK+ELQFLALLPTLRP VRVIAECGNWRKFMWKPLKEIAGLT    A
Sbjct: 176 IIEAKVLSKAELQFLALLPTLRPNVRVIAECGNWRKFMWKPLKEIAGLTTSEEA 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646756|gb|ACU23851.1| unknown [Glycine max]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 126/234 (53%), Positives = 145/234 (61%), Gaps = 59/234 (25%)

Query: 1   MAAAPCLHYGTPA---SIKIQQKQQPTRNWMM---------MQGLRRRNGKA---SKRVG 45
           M++   L YG P    ++   +KQQ  RN  +         M+G R R+G     SKRVG
Sbjct: 1   MSSTASLGYGAPTCFNNVHHTKKQQAMRNSFLSNKHNSVRVMKGWRGRHGNTNNTSKRVG 60

Query: 46  VTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLG 105
           +  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+AIY PHEGGYEGRYL+RL+  G
Sbjct: 61  IVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALAIYPPHEGGYEGRYLSRLKRQG 115

Query: 106 YYFLDLSARGLGDPETTLTKVYPVCP---------------------------------- 131
           YYFLDL+ARGLGDPETTLTK++PVCP                                  
Sbjct: 116 YYFLDLTARGLGDPETTLTKIHPVCPPHVGKQPIARWYFPPEVDYRLEALPPNAKGLVVW 175

Query: 132 -----VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 180
                VLSK+ELQFLALLPTLRP VRVI ECGNWRKFMWKPLKEIAGLT    A
Sbjct: 176 IIEAKVLSKAELQFLALLPTLRPNVRVIVECGNWRKFMWKPLKEIAGLTTSEEA 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460593|ref|XP_003600578.1| NAD(P)H-quinone oxidoreductase subunit N [Medicago truncatula] gi|355489626|gb|AES70829.1| NAD(P)H-quinone oxidoreductase subunit N [Medicago truncatula]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/229 (55%), Positives = 141/229 (61%), Gaps = 54/229 (23%)

Query: 1   MAAAPCLHYGTPASIKIQQKQQPTRNWMM----------MQGLRRRNGKASKRVGVTNCS 50
           M A+  L  G P    IQQ   P RN  M          M G R +   +++   V  CS
Sbjct: 1   MLASASLGCGGPTCSNIQQ---PPRNSFMAENHNNSVRLMMGWRGKQCNSNRSKRVVKCS 57

Query: 51  GNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLD 110
             SGI +GDFIGGDL+K D+GRWLSDVE+HKA+AIYTPHEGGYEGRYL+RL+  GYYFLD
Sbjct: 58  --SGIGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLD 115

Query: 111 LSARGLGDPETTLTKVYPVCP--------------------------------------- 131
           L+ARGLGDPETTLTKV+PVCP                                       
Sbjct: 116 LTARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAK 175

Query: 132 VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 180
           VLSK+ELQFLALLPTLRP VRVIAECGNWRKFMWKPL EIAGLT    A
Sbjct: 176 VLSKAELQFLALLPTLRPNVRVIAECGNWRKFMWKPLNEIAGLTTSQEA 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124860|ref|XP_002319440.1| predicted protein [Populus trichocarpa] gi|222857816|gb|EEE95363.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 128/191 (67%), Gaps = 39/191 (20%)

Query: 28  MMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYT 87
           M++QG    N  + +R         SGI +GDFIGGDL+K D+G+WLSDVE+HKA+AIY 
Sbjct: 1   MLLQGFIYNNNVSKRRPTAGLVVKCSGIGLGDFIGGDLVKFDIGQWLSDVEEHKALAIYP 60

Query: 88  PHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---------------- 131
           PHEGGYEGRYLNRL   GYYFLDLSARGLGDPETTLTKV+PVCP                
Sbjct: 61  PHEGGYEGRYLNRLIRQGYYFLDLSARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPE 120

Query: 132 -----------------------VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPL 168
                                  VLSK+ELQFLALLPTLRP VRV+AECGNWRKF+WKPL
Sbjct: 121 VDFRLEHLPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVVAECGNWRKFVWKPL 180

Query: 169 KEIAGLTQEGA 179
           KEIAGLT EGA
Sbjct: 181 KEIAGLTAEGA 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807976|ref|NP_001242714.1| uncharacterized protein LOC100777422 [Glycine max] gi|255639899|gb|ACU20242.1| unknown [Glycine max]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 131/195 (67%), Gaps = 48/195 (24%)

Query: 29  MMQGLRRRNGK---ASKRV-GVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIA 84
           +++G R R+G     SKRV GV  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+A
Sbjct: 3   VVKGWRGRHGNNCNTSKRVVGVVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALA 57

Query: 85  IYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP------------- 131
           IY PHEGGYEGRYL+RL+  GYYFLDL+ARGLGDPETTLTK++PVCP             
Sbjct: 58  IYPPHEGGYEGRYLSRLKRQGYYFLDLTARGLGDPETTLTKIHPVCPPHVGKQPIARWYF 117

Query: 132 --------------------------VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMW 165
                                     VLSK+ELQFLALLPTLRP VRVIAECG+WRKFMW
Sbjct: 118 PPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVIAECGDWRKFMW 177

Query: 166 KPLKEIAGLTQEGAA 180
           KPLKEIAGLT    A
Sbjct: 178 KPLKEIAGLTTSEEA 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584394|ref|XP_002532930.1| conserved hypothetical protein [Ricinus communis] gi|223527306|gb|EEF29457.1| conserved hypothetical protein [Ricinus communis]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 143/227 (62%), Gaps = 53/227 (23%)

Query: 1   MAAAPCL-HYGTPASIKIQQKQQPTRNWMMMQGLRRRN--------GKASKR-VGVTNCS 50
           MAAA CL H GTPA   +QQ Q  T   M+ +   ++N         K+ KR VGV  CS
Sbjct: 1   MAAATCLQHVGTPAWTNLQQ-QNSTSYSMVARMTGKKNLKLLGLGTSKSKKRAVGVVRCS 59

Query: 51  GNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLD 110
           G    +    IGGDL+K DL +WLSDVE+HKA+AIYTPHEGGYEGRY  RLRY GYYFLD
Sbjct: 60  GIGIGDF---IGGDLVKFDLEQWLSDVEEHKALAIYTPHEGGYEGRYFTRLRYQGYYFLD 116

Query: 111 LSARGLGDPETTLTKVYPVCP--------------------------------------- 131
           L+ARGLGDPETTLTK++PVCP                                       
Sbjct: 117 LTARGLGDPETTLTKIHPVCPAHVGKQPIARWYFPPEVDYRLAALPPDAKGLVVWIIEAK 176

Query: 132 VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEG 178
           VLSK+ELQFLALLP+LRPKVRVIAECGNWRK MWKPLKEIAGLT E 
Sbjct: 177 VLSKAELQFLALLPSLRPKVRVIAECGNWRKVMWKPLKEIAGLTAEA 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478527|ref|XP_002275876.2| PREDICTED: NAD(P)H-quinone oxidoreductase subunit N [Vitis vinifera] gi|297745733|emb|CBI15789.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 113/156 (72%), Gaps = 39/156 (25%)

Query: 59  DFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGD 118
           D +GGDL+K DLGRWLSDVE+HKA+AIY+PHEGGYEGRYLNRLRY GYYFLDLSARGLGD
Sbjct: 27  DLVGGDLVKLDLGRWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 86

Query: 119 PETTLTKVYPVCP---------------------------------------VLSKSELQ 139
           PETTLT+++PVCP                                       VLSKSELQ
Sbjct: 87  PETTLTEIHPVCPAHVGKQPIARWYFPPEVDYRLSLLPPNAKGLVVWIIEAKVLSKSELQ 146

Query: 140 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLT 175
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIA LT
Sbjct: 147 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAALT 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126207|ref|XP_003564780.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit N-like [Brachypodium distachyon]

 Score =  205 bits (521), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 114/161 (70%), Gaps = 39/161 (24%)

Query: 59  DFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGD 118
           DF+GGDL+KPDLGRWL DVEKHKA+AIY PHEGGYEGRYLNRLRY GYYFLDLSARGLGD
Sbjct: 48  DFVGGDLVKPDLGRWLEDVEKHKALAIYPPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 107

Query: 119 PETTLTKVYPVCP---------------------------------------VLSKSELQ 139
           PE+TLTK++PVCP                                       VLSK+ELQ
Sbjct: 108 PESTLTKIHPVCPPSLGRQPIARWYFPPEVDYRLSLLHPDAKGLVVWVLEAKVLSKAELQ 167

Query: 140 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 180
           FLA+LP LRPKVRVIAECGNWRKF+WKPLK+I+GL  +  A
Sbjct: 168 FLAMLPDLRPKVRVIAECGNWRKFIWKPLKQISGLEPDPDA 208

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212720849|ref|NP_001131237.1| uncharacterized protein LOC100192546 [Zea mays] gi|194690956|gb|ACF79562.1| unknown [Zea mays] gi|414879382|tpg|DAA56513.1| TPA: NADH dehydrogenase I subunit N [Zea mays]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 114/163 (69%), Gaps = 39/163 (23%)

Query: 57  IGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGL 116
           + DF+GGDL++PDLG+WL DVEKHKA+AIY PHEGGYEGRYLNRLRY GYYFLDLSARGL
Sbjct: 108 VWDFVGGDLVRPDLGKWLDDVEKHKALAIYPPHEGGYEGRYLNRLRYQGYYFLDLSARGL 167

Query: 117 GDPETTLTKVYPVCP---------------------------------------VLSKSE 137
           GDPETTLTKV+PVCP                                       VLSK+E
Sbjct: 168 GDPETTLTKVHPVCPPSLGRQPVARWYFPPEVDYRLSLLHPDAKGLVVWIIEAKVLSKAE 227

Query: 138 LQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 180
           LQFLA+LP +RPKVRVIAECGNWR F+WKPLK+IAGL  +  A
Sbjct: 228 LQFLAMLPDIRPKVRVIAECGNWRSFVWKPLKQIAGLEPDPDA 270

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2161263	209	NdhN "NADH dehydrogenase-like	0.522	0.449	0.514	7.4e-40

TAIR|locus:2161263 NdhN "NADH dehydrogenase-like complex N" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 52/101 (51%), Positives = 60/101 (59%)

Query:    39 KASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEXXXXXXXX 98
             K  +  GV  CS      I D+IGGDL+KPD+G+WL DVE+HKAIAIY PHE        
Sbjct:    37 KRRRSTGV-KCSS-----IADYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYL 90

Query:    99 XXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPV-LSKSEL 138
                        D+SARGLGDPETTL K YPVCP  L K  +
Sbjct:    91 NRLKMQGYYFLDISARGLGDPETTLLKNYPVCPAHLGKQPI 131

GO:0016020 "membrane" evidence=IEA

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010258 "NADH dehydrogenase complex (plastoquinone) assembly" evidence=IMP

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=TAS

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00005655001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole gen [...] (254 aa)			•	•			•		0.836
	ndhM	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; NDH-1 shuttles elect [...] (208 aa)			•				•		0.829
	ndhH	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence;; NDH shuttles elect [...] (372 aa)					•		•		0.780
	ndhJ	NADH dehydrogenase subunit J ; NDH shuttles electrons from NAD(P)H-plastoquinone, via FMN and i [...] (158 aa)					•		•		0.743
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•	•			•		0.727
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•	•			•		0.721
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)			•	•			•		0.717
	GSVIVG00038032001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (158 aa)			•	•			•		0.702
	GSVIVG00029202001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (297 aa)			•	•					0.681
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)			•	•					0.680

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam11909	154	pfam11909, NdhN, NADH-quinone oxidoreductase cyano	3e-46

>gnl|CDD|152344 pfam11909, NdhN, NADH-quinone oxidoreductase cyanobacterial subunit N

 Score =  148 bits (376), Expect = 3e-46
 Identities = 54/147 (36%), Positives = 70/147 (47%), Gaps = 46/147 (31%)

Query: 71  GRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVC 130
            ++  D+EK  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDPE  LT+++ V 
Sbjct: 8   RKFRRDLEKAGALAVYAPLEGGYEGRYLRRLRAAGYRTLITSARGLGDPEAFLTQLHGVR 67

Query: 131 P----------------------------------------------VLSKSELQFLALL 144
           P                                              VLSKSEL++L  L
Sbjct: 68  PPHLGKQSIGRNAAVGEVYYVPPQLGYYLEELPPKAKGLVLWLLEGQVLSKSELEYLCDL 127

Query: 145 PTLRPKVRVIAECGNWRKFMWKPLKEI 171
           P   P+++V+ E G  R F W+PL + 
Sbjct: 128 PQREPRLKVVVEMGGDRSFRWQPLADA 154

The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. Homologues of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The cyanobacterial NDH-1 complex contains additional subunits, NdhM and NdhN, compared with the minimal set of the bacterial enzyme and these seem to be specific for thylakoid-located NDH-1 of photosynthetic organisms. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF11909	154	NdhN: NADH-quinone oxidoreductase cyanobacterial s	100.0

>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain

Probab=100.00  E-value=1.5e-60  Score=384.33  Aligned_cols=101  Identities=57%  Similarity=0.965  Sum_probs=99.4

Q ss_pred             hhHHHHHHhcceeEEecCCCCCchhhhHHHhhhcCceEEEeccCCCCChhhhhhhccCCcc-------------------
Q 030269           71 GRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-------------------  131 (180)
Q Consensus        71 ~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRP-------------------  131 (180)
                      .+|+|||||+||||||+|+||||||||+||||++||+|+++|||||||||+|||++|||||                   
T Consensus         8 ~~f~rdlEk~gaLavy~PlEGG~EgRy~RRLRa~GY~t~~~SArGLGD~~ayLt~~HGVRPpHLGk~~ig~~aavG~v~~   87 (154)
T PF11909_consen    8 KKFIRDLEKSGALAVYAPLEGGYEGRYLRRLRAAGYRTLIISARGLGDPEAYLTKVHGVRPPHLGKQSIGRGAAVGEVYY   87 (154)
T ss_pred             hHHHHHHHHcCceEEEcCCcCchhHHHHHHHHhcCceEEEecccCCCCHHHHHhccCCCCCCCCCccccccccccceeEE
Confidence            5899999999999999999999999999999999999999999999999999999999999                   


Q ss_pred             ---------------------------ccCHHHHHHHHcCCCCCCCeEEEEEeCCeeeeeecchHHH
Q 030269          132 ---------------------------VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEI  171 (180)
Q Consensus       132 ---------------------------VLS~~ELe~L~~Lp~~ePrvKVVvEmGG~R~frWqPL~~~  171 (180)
                                                 |||+|||+||++||++||||||||||||||+||||||+++
T Consensus        88 ~pP~~~y~Le~Lp~~~KglvLWiiEG~vLS~~El~~L~~Lp~~ePrvKvVvE~Gg~R~~rW~pL~~~  154 (154)
T PF11909_consen   88 VPPIVNYQLENLPPKSKGLVLWIIEGQVLSRQELEYLCNLPQREPRVKVVVEMGGDRSFRWQPLKEI  154 (154)
T ss_pred             eCchhhhhHhhcCCCCCcEEEEEEeccccCHHHHHHHHhccccCCCeEEEEEeCCceeEEeeecccC
Confidence                                       9999999999999999999999999999999999999875

The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00