Citrus Sinensis ID: 030275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEcccccEEEEcccccEEEEEccccEEEEccccccccEEEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccccccccccccccEEccccccHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccEEEEcccccEEEcccccEEEEEccccEEEEccccccccEEEEEEccccccHHHcccHHHHHHHHHHHHcccccccEEEEEcccc
Coil and Loop (DISEMBL)
maslqhspsssihqtsflnslpqlgvqkyggvlpAVCRRGISLIVKAEhasmassansldkcgrrqmIAVGVIapwvslvnqtppsfaaesnkgflsvtdkkdgysfvypfgwqeVIIEGQDKVFKDVIEplesvsvnliptgkqdirdfgppQEVAETLIKKflapptqktkIIAASEV
Flexible Loop (DISEMBL)
maslqhspsssiHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSvnliptgkqdirdFGPPQEVAETLIkkflapptqktkiiaasev
Low Complexity Region (SEG)
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEV
Disordered region (IsUnstruct)
****************FLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHA********LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF*****VAETLIKKFL***************
Disordered Region (DISOPRED)
******************************************************************MIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE*
Disordered Region (DISEMBL)
**************TSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEV
Disordered Region (DISPRO)
******SPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEH***********KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
P82538	230	PsbP-like protein 1, chlo	yes	no	0.822	0.643	0.657	9e-53
O80634	238	PsbP-like protein 2, chlo	no	no	0.711	0.537	0.340	3e-13
O23403	287	PsbP domain-containing pr	no	no	0.555	0.348	0.314	4e-06
P82537	30	Thylakoid lumenal 17 kDa	N/A	no	0.166	1.0	0.766	7e-06
O49080	264	Oxygen-evolving enhancer	N/A	no	0.638	0.435	0.315	3e-05

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score =  206 bits (523), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 127/149 (85%), Gaps = 1/149 (0%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAE
Sbjct: 18  GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76

Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
           S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77  SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136

Query: 151 GPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           GPP+++AETLIKK LAPP QKT +I ASE
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLIDASE 165

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.
Arabidopsis thaliana (taxid: 3702)

>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 46  KAEHASMASSANSLDKCGRRQ-MIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDK 101
           KA+ +       S +   RRQ ++ VG      +LV  + P+    A E  K +    D+
Sbjct: 41  KADSSESTYQKGSGNNWKRRQALVGVG------TLVATSIPATLLLAEEIPKSYSPFVDR 94

Query: 102 KDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLI 161
           +DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV   L+
Sbjct: 95  EDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLV 154

Query: 162 KKFLAPPTQKTKIIAASE 179
           K   A P Q   I    E
Sbjct: 155 KHKFAAPNQVATIYDMKE 172

Required for accumulation of the chloroplast NAD(P)H dehydrogenase (NDH) complex. May be a subunit of this complex.

Arabidopsis thaliana (taxid: 3702)

>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 63  GRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           GRR+ + +G++   + +V+Q   P +FA  S   F    D  DGYSF YP  W +V   G
Sbjct: 78  GRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQNWIQVRGAG 134

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQD---IRDFGPPQEVAETLIKKFL 165
            D  F+D +   E++SV        +   + D G P+EV + +++++L
Sbjct: 135 ADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYL 182

Arabidopsis thaliana (taxid: 3702)

>sp|P82537|TL1X_SPIOL Thylakoid lumenal 17 kDa protein (Fragment) OS=Spinacia oleracea PE=1 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/30 (76%), Positives = 25/30 (83%)

Query: 89  AESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
           AES KGFL V DKKDGY+F+YPFG QEV I
Sbjct: 1   AESKKGFLPVIDKKDGYTFLYPFGGQEVSI 30

Spinacia oleracea (taxid: 3562)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 43  LIVKAEHASMASSANSLDKCGRRQMI-------AVGV-IAPWVSLVNQTPPSFA-AESNK 93
           LI +A+ +S  +  NS     RR  +       AVG  IAP  +   +    F  A++N 
Sbjct: 36  LICRAQKSS-DTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNT 94

Query: 94  GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
            FL  T   DG++ + P  W   +EV   GQ   ++D  +   +VSV + PT K+ I D+
Sbjct: 95  DFLPYTG--DGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDY 152

Query: 151 GPPQEVAETL 160
           G P+E   T+
Sbjct: 153 GTPEEFLSTV 162

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
224109588	243	predicted protein [Populus trichocarpa]	0.977	0.724	0.716	1e-65
255582368	242	Thylakoid lumenal 25.6 kDa protein, chlo	0.977	0.727	0.675	5e-63
225449633	238	PREDICTED: putative oxygen evolving enha	0.955	0.722	0.681	4e-62
388493196	240	unknown [Lotus japonicus]	0.955	0.716	0.646	2e-56
449464194	236	PREDICTED: psbP-like protein 1, chloropl	0.922	0.703	0.612	3e-54
255626971	216	unknown [Glycine max]	0.944	0.787	0.636	3e-53
356568959	236	PREDICTED: uncharacterized protein LOC10	0.944	0.720	0.636	4e-53
15233245	230	PsbP-like protein 1 [Arabidopsis thalian	0.822	0.643	0.657	4e-51
356499671	232	PREDICTED: psbP-like protein 1, chloropl	0.927	0.719	0.627	5e-51
297820294	229	photosystem II reaction center PsbP fami	0.788	0.620	0.683	1e-50

>gi|224109588|ref|XP_002315246.1| predicted protein [Populus trichocarpa] gi|222864286|gb|EEF01417.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 152/180 (84%), Gaps = 4/180 (2%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLG-VQKYGGVLPAVCRRGISLIVKAEHASMASSANSL 59
           MASLQ+SPS  ++ T    SLPQ+G  QK  G+L + CRRG+S +V+AE +S  S++ S 
Sbjct: 1   MASLQNSPS--VYHTLSPYSLPQVGGAQKNHGML-SFCRRGLSFLVRAEQSSPNSTSLSQ 57

Query: 60  DKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE 119
            + GRR++IAV VIAPWVS+VNQTPPSFAAES KGFL VTDKKDGYSF+YPFGWQEV+IE
Sbjct: 58  VRFGRRELIAVSVIAPWVSMVNQTPPSFAAESKKGFLLVTDKKDGYSFLYPFGWQEVVIE 117

Query: 120 GQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           GQDKVFKDVIEPLES+SVN+IPT KQDIRDFGPPQ+VAETLIKK LAPP+QKTK+I A E
Sbjct: 118 GQDKVFKDVIEPLESISVNVIPTVKQDIRDFGPPQQVAETLIKKVLAPPSQKTKLIEAKE 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582368|ref|XP_002531973.1| Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223528370|gb|EEF30409.1| Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 121/179 (67%), Positives = 144/179 (80%), Gaps = 3/179 (1%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ+SPS     T   NS PQ+G+Q+Y    P  CR+GIS +V+AEH+    ++ S  
Sbjct: 1   MASLQNSPS--FCYTLSPNSFPQIGLQRYYDSFPC-CRKGISFVVRAEHSLPNLTSLSQV 57

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           + GRRQ++AV ++APWVSLVNQT PSFAAE+ KGFL VTDKKDGYSF+YPFGWQEV IEG
Sbjct: 58  RPGRRQLVAVSLVAPWVSLVNQTSPSFAAETKKGFLLVTDKKDGYSFLYPFGWQEVFIEG 117

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           QDKVFKD+IEPLE+VSV  +PT KQDIRDFGPPQ+VAE LIKK LAPP+QKTK+I ASE
Sbjct: 118 QDKVFKDIIEPLENVSVTTVPTSKQDIRDFGPPQQVAEVLIKKVLAPPSQKTKLIEASE 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449633|ref|XP_002284256.1| PREDICTED: putative oxygen evolving enhancer protein [Vitis vinifera] gi|296086290|emb|CBI31731.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 122/179 (68%), Positives = 143/179 (79%), Gaps = 7/179 (3%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ+SP+  IH+T F NS  QLG+QK+G      CRRG+SL+V+AE  S   + N  D
Sbjct: 1   MASLQNSPA--IHRTLFPNSFSQLGLQKHGQF--RCCRRGVSLLVRAEQVS---TTNRED 53

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             GRRQ++AVG I  WVSLVNQT  SFAAE+ KGFL+V DKKDGYSF+YPFGWQEV+I+G
Sbjct: 54  GPGRRQVLAVGAIGSWVSLVNQTSISFAAETKKGFLAVMDKKDGYSFLYPFGWQEVVIDG 113

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           QDKVFKDVIEPLESVSVN+IPT KQDIR+ G PQEVAE LIKK LAPP+QKTK++ A E
Sbjct: 114 QDKVFKDVIEPLESVSVNMIPTVKQDIRELGSPQEVAEALIKKVLAPPSQKTKLVEAVE 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493196|gb|AFK34664.1| unknown [Lotus japonicus]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/181 (64%), Positives = 139/181 (76%), Gaps = 9/181 (4%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSAN--S 58
           M SLQ+SP+  +H+T FLNS PQ    K+G    +  R GIS  VKA H   ASSA   S
Sbjct: 1   MVSLQNSPT--LHRTLFLNSFPQ----KHGASR-SPRREGISFTVKAAHEPSASSAGFPS 53

Query: 59  LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
            D+ GRR++IA+G  AP V L +Q   SFAAE+ KGFL VTD+KDGY+F+YPFGWQEV I
Sbjct: 54  QDRPGRREVIAIGTTAPLVFLFSQNSSSFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSI 113

Query: 119 EGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAAS 178
           EGQDKVFKDVIEPLESVSVN+IPTGKQ+I++FGPPQ+V ETLIK+ LAPP QKTKII A+
Sbjct: 114 EGQDKVFKDVIEPLESVSVNIIPTGKQNIKEFGPPQQVGETLIKRVLAPPNQKTKIIEAT 173

Query: 179 E 179
           E
Sbjct: 174 E 174

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464194|ref|XP_004149814.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Cucumis sativus] gi|449519084|ref|XP_004166565.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 134/183 (73%), Gaps = 17/183 (9%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMAS----SA 56
           MASLQ+S         F+NSLPQ    K  G     CR G+S +V+AE A  +S    + 
Sbjct: 1   MASLQNSL--------FINSLPQ----KLHGRF-VCCRAGVSFLVRAEQAHGSSINGHAC 47

Query: 57  NSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEV 116
           +S D+ GRRQ+++      W+SL +    SFAAE+ KGFLSV+DKKDGYSFVYPFGWQEV
Sbjct: 48  SSEDRLGRRQLLSGSAFITWISLADMNSMSFAAETKKGFLSVSDKKDGYSFVYPFGWQEV 107

Query: 117 IIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIA 176
           +I+GQDKVFKDVIEPLE+VSVNLIPT K+DIRDFGPPQ+VAETLIKK LAP  QKTK+I 
Sbjct: 108 VIDGQDKVFKDVIEPLENVSVNLIPTSKEDIRDFGPPQQVAETLIKKVLAPSNQKTKLIE 167

Query: 177 ASE 179
           ASE
Sbjct: 168 ASE 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626971|gb|ACU13830.1| unknown [Glycine max]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 129/179 (72%), Gaps = 9/179 (5%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M SLQ+SP+  +H+T   NS PQ    +      +  R  IS IVKA     AS A S D
Sbjct: 1   MTSLQNSPT--LHRTMLHNSFPQKHATR------SSRRDAISFIVKAAQEPSASLA-SQD 51

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IA G  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 52  RQRRRQVIAFGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 111

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEVAETLIKK LAPP QKTKI+ A E
Sbjct: 112 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKE 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568959|ref|XP_003552675.1| PREDICTED: uncharacterized protein LOC100305918 [Glycine max]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 129/179 (72%), Gaps = 9/179 (5%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M SLQ+SP+  +H+T   NS PQ    +      +  R  IS IVKA     AS A S D
Sbjct: 1   MTSLQNSPT--LHRTMLHNSFPQKHATR------SSRRDAISFIVKAAQEPSASLA-SQD 51

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IA G  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 52  RQRRRQVIAFGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 111

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEVAETLIKK LAPP QKTKI+ A E
Sbjct: 112 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKE 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233245|ref|NP_191093.1| PsbP-like protein 1 [Arabidopsis thaliana] gi|9297075|sp|P82538.1|PPL1_ARATH RecName: Full=PsbP-like protein 1, chloroplastic; AltName: Full=OEC23-like protein 4; AltName: Full=PsbP-related thylakoid lumenal protein 2; Flags: Precursor gi|16930399|gb|AAL31885.1|AF419553_1 AT3g55330/T26I12_210 [Arabidopsis thaliana] gi|7019666|emb|CAB75767.1| putative protein [Arabidopsis thaliana] gi|20453231|gb|AAM19854.1| AT3g55330/T26I12_210 [Arabidopsis thaliana] gi|21593252|gb|AAM65201.1| unknown [Arabidopsis thaliana] gi|332645848|gb|AEE79369.1| PsbP-like protein 1 [Arabidopsis thaliana]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 127/149 (85%), Gaps = 1/149 (0%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAE
Sbjct: 18  GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76

Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
           S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77  SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136

Query: 151 GPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           GPP+++AETLIKK LAPP QKT +I ASE
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLIDASE 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499671|ref|XP_003518660.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Glycine max]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 113/180 (62%), Positives = 130/180 (72%), Gaps = 13/180 (7%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M+ LQ+SP+  +H +SF    PQ  V +      +  R  IS IVKA     AS   S D
Sbjct: 1   MSLLQNSPT--LHNSSF----PQKHVTR------SSRRDAISFIVKAVQEPSAS-LTSQD 47

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IAVG  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 48  RQRRRQVIAVGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 107

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEV 180
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEVAETLIKK LAPP QKTKI+ A E+
Sbjct: 108 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKEL 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820294|ref|XP_002878030.1| photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata] gi|297323868|gb|EFH54289.1| photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 122/142 (85%)

Query: 38  RRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLS 97
           ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAES KGFL+
Sbjct: 23  KKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLA 82

Query: 98  VTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVA 157
           V+D KD YSF+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNLIPT KQ I++FGPP+++A
Sbjct: 83  VSDNKDAYSFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLIPTSKQTIKEFGPPKQIA 142

Query: 158 ETLIKKFLAPPTQKTKIIAASE 179
           ETLIKK LAPP QKT +I ASE
Sbjct: 143 ETLIKKVLAPPNQKTTLIDASE 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.916	0.717	0.603	4.4e-52
TAIR|locus:2039727	238	PnsL1 "Photosynthetic NDH subc	0.716	0.542	0.350	2.1e-13
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.605	0.379	0.307	4.1e-07

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 108/179 (60%), Positives = 141/179 (78%)

Query:     1 MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
             MASL+ SPSS I       S+ ++GV      +P+  ++G+S +VKAEH S +SS++  D
Sbjct:     1 MASLKLSPSSPI-------SISKVGV------IPS-SKKGLSFLVKAEHHSSSSSSHLQD 46

Query:    61 KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             KC RR ++  GV+APW+SL+++ P SFAAES KGFL+V+D KD Y+F+YPFGWQEV+IEG
Sbjct:    47 KCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEG 106

Query:   121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179
             QDKV+KDVIEPLESVSVNL+PT KQ I++FGPP+++AETLIKK LAPP QKT +I ASE
Sbjct:   107 QDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASE 165

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2039727 PnsL1 "Photosynthetic NDH subcomplex L 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 48/137 (35%), Positives = 65/137 (47%)

Query:    46 KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDKK 102
             KA+ +       S +   RRQ + VGV     +LV  + P+    A E  K +    D++
Sbjct:    41 KADSSESTYQKGSGNNWKRRQAL-VGV----GTLVATSIPATLLLAEEIPKSYSPFVDRE 95

Query:   103 DGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIK 162
             DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV   L+K
Sbjct:    96 DGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVK 155

Query:   163 KFLAPPTQKTKIIAASE 179
                A P Q   I    E
Sbjct:   156 HKFAAPNQVATIYDMKE 172

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query:    54 SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
             + A  +   GRR+ + +G++   + +V+Q   P +FA  S   F    D  DGYSF YP 
Sbjct:    69 TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125

Query:   112 GWQEVIIEGQDKVFKDVIEPLESVSVNLI-PTGKQ--DIRDFGPPQEVAETLIKKFL 165
              W +V   G D  F+D +   E++SV    P+      + D G P+EV + +++++L
Sbjct:   126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYL 182


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       180   0.00092  109 3  11 22  0.45    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  146 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.55u 0.09s 16.64t   Elapsed:  00:00:01
  Total cpu time:  16.55u 0.09s 16.64t   Elapsed:  00:00:01
  Start:  Fri May 10 17:37:48 2013   End:  Fri May 10 17:37:49 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82538	PPL1_ARATH	No assigned EC number	0.6577	0.8222	0.6434	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam01789	163	pfam01789, PsbP, PsbP	3e-34
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	5e-07
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	9e-05

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  118 bits (297), Expect = 3e-34
 Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 4/98 (4%)

Query: 86  SFAAESNKGFLSVTDKKDGYSFVYPFGW-QEVIIEGQDKVFKDVIEPLESVSVNLIPTGK 144
           +  A++N GF +  D  DGY F+YP GW +EV+ +G D VF D+IE  E+VSV + P  K
Sbjct: 1   ACKAKTNAGFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDK 60

Query: 145 Q-DIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASE 179
           +  + D G P+EV E L++  LAP    ++ +++ ASE
Sbjct: 61  KKSLEDLGSPEEVGERLLRGVLAPEGSGREAELLEASE 98

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 54  SSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGW 113
           + A  +   GRR+ + +G++   + +V++     A  S   F    D  DGYSF YP  W
Sbjct: 69  TDAKQVCAVGRRKSMMMGLLMSGL-IVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNW 127

Query: 114 QEVIIEGQDKVFKDVIEPLESVSVNL-IPTGKQ--DIRDFGPPQEVAETLIKKFL 165
            +V   G D  F+D +   E++SV    P+  +   + D G P+EV + +++++L
Sbjct: 128 IQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYL 182

Length = 286

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 46  KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----------ESNKG 94
           +       +         RR   A+ ++A   +   +  P+ AA           ++N G
Sbjct: 34  RPSQVVCRAQEEDNSAVSRR--AALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTG 91

Query: 95  FLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFG 151
           FL      DG+  + P  W   +E    GQ   F+D  +   ++SV + PT K+ I D+G
Sbjct: 92  FLPYNG--DGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYG 149

Query: 152 PPQE 155
            P+E
Sbjct: 150 SPEE 153

Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.97
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	99.97
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.92
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.88
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.86
PLN03152	241	hypothetical protein; Provisional	98.95
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	92.01

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.97  E-value=3.4e-32  Score=235.09  Aligned_cols=117  Identities=31%  Similarity=0.544  Sum_probs=101.3

Q ss_pred             cccchHHHHHHHHH-Hh-HhhhcCCCCcccccccccCceeeeeCCCCeEEeccCCCeeeeecCceeeeeCCCCCCcceEE
Q 030275           60 DKCGRRQMIAVGVI-AP-WVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSV  137 (180)
Q Consensus        60 ~~~~RR~aL~~~~~-aa-~~s~~~~a~~A~Ae~~~~gf~~y~D~~dGYsf~yP~~W~~v~~~G~dv~F~D~~~~~eNVsV  137 (180)
                      ..++||++|+.++. +. +.+.++ ...|+|+  +.||++|+|+.|||+|+||.||++|.+.|+|++|||+++.+|||||
T Consensus        75 ~~~~rr~~~~~~l~~~~~~~s~~~-~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVSV  151 (286)
T PLN00059         75 CAVGRRKSMMMGLLMSGLIVSEAN-LPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSV  151 (286)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHhhc-CchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceEE
Confidence            57789999865553 33 344443 3477876  4589999999999999999999999999999999999999999999


Q ss_pred             EEecCC---CCCcccCCCHHHHHHHHHHHhcCCC-------CCceeeeecee
Q 030275          138 NLIPTG---KQDIRDFGPPQEVAETLIKKFLAPP-------TQKTKIIAASE  179 (180)
Q Consensus       138 ~Vsp~~---k~sI~dlG~PeeVa~~L~~~~~~~p-------~~~a~Li~a~e  179 (180)
                      +|+|++   +++|+|||+|+||||+|+++++++|       +++++||+|++
T Consensus       152 ~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~  203 (286)
T PLN00059        152 EFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSS  203 (286)
T ss_pred             EEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeee
Confidence            999876   5999999999999999999999974       58999999985

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=99.97  E-value=2.1e-31  Score=229.53  Aligned_cols=120  Identities=26%  Similarity=0.405  Sum_probs=105.8

Q ss_pred             cccccchHHHHHHHHHH-hHhhhcCCCCccccc--------ccccCceeeeeCCCCeEEeccCCCee---eeecCceeee
Q 030275           58 SLDKCGRRQMIAVGVIA-PWVSLVNQTPPSFAA--------ESNKGFLSVTDKKDGYSFVYPFGWQE---VIIEGQDKVF  125 (180)
Q Consensus        58 ~~~~~~RR~aL~~~~~a-a~~s~~~~a~~A~Ae--------~~~~gf~~y~D~~dGYsf~yP~~W~~---v~~~G~dv~F  125 (180)
                      +...++||.+|+++++| +..+.++|+++||+|        +..+||.+|.  +|||+|+||++|++   ++++|+|++|
T Consensus        46 ~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f  123 (260)
T PLN00042         46 DNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRF  123 (260)
T ss_pred             ccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEe
Confidence            34668899999888885 567899999999987        3469999994  69999999999995   4577999999


Q ss_pred             eCCCCCCcceEEEEecCCCCCcccCCCHHH----HHHHHHHHhcCCC-----CC------ceeeeecee
Q 030275          126 KDVIEPLESVSVNLIPTGKQDIRDFGPPQE----VAETLIKKFLAPP-----TQ------KTKIIAASE  179 (180)
Q Consensus       126 ~D~~~~~eNVsV~Vsp~~k~sI~dlG~Pee----Va~~L~~~~~~~p-----~~------~a~Li~a~e  179 (180)
                      ||+++++|||||+|+|+++++|+|||+|||    |+++|++|++.++     |+      +++||++++
T Consensus       124 ~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~  192 (260)
T PLN00042        124 EDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESST  192 (260)
T ss_pred             eccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeee
Confidence            999999999999999999999999999999    9999999999876     22      689999875

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.92  E-value=3e-25  Score=179.48  Aligned_cols=97  Identities=46%  Similarity=0.774  Sum_probs=83.5

Q ss_pred             CCcccccccccCceeeeeCCCCeEEeccCCCeeeeecCceeeeeCCCCCCcceEEEEecCCCC-CcccCCCHHHHHHHHH
Q 030275           83 TPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ-DIRDFGPPQEVAETLI  161 (180)
Q Consensus        83 a~~A~Ae~~~~gf~~y~D~~dGYsf~yP~~W~~v~~~G~dv~F~D~~~~~eNVsV~Vsp~~k~-sI~dlG~PeeVa~~L~  161 (180)
                      +..+.+++..+||++|.|+++||+|+||++|+++++.|+|++|+|+++.++||+|+|+|+.+. +|+|||+|++|+++|+
T Consensus        11 ~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~   90 (175)
T PF01789_consen   11 ANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLL   90 (175)
T ss_dssp             -----STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHH
T ss_pred             chhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHh
Confidence            333444567899999999999999999999999999999999999999999999999999985 9999999999999999


Q ss_pred             HHhcCCCC--Cceeeeecee
Q 030275          162 KKFLAPPT--QKTKIIAASE  179 (180)
Q Consensus       162 ~~~~~~p~--~~a~Li~a~e  179 (180)
                      ++.+++++  +.++||++.+
T Consensus        91 ~~~~~~~~~~~~a~li~a~~  110 (175)
T PF01789_consen   91 NGELASPGSGREAELISASE  110 (175)
T ss_dssp             HHCCCHCTSSEEEEEEEEEE
T ss_pred             hhhcccccCCcceEEEEeee
Confidence            99998886  8999999875

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.88  E-value=2.5e-22  Score=173.86  Aligned_cols=121  Identities=21%  Similarity=0.406  Sum_probs=97.1

Q ss_pred             ccccchHHHHHHHHHHhHhhhcCCCCcccc--------------cccccCceeeeeCCC-------------CeEEeccC
Q 030275           59 LDKCGRRQMIAVGVIAPWVSLVNQTPPSFA--------------AESNKGFLSVTDKKD-------------GYSFVYPF  111 (180)
Q Consensus        59 ~~~~~RR~aL~~~~~aa~~s~~~~a~~A~A--------------e~~~~gf~~y~D~~d-------------GYsf~yP~  111 (180)
                      ...++||.+|+.++++++...++.+..++|              +....||++|..+..             .|+|+||+
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~  121 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQ  121 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCC
Confidence            466799999986666543333333333332              344589999998876             39999999


Q ss_pred             CCeeeeec-----CceeeeeCCCCCCcceEEEEecC--------CCCCcccCCCHHHHHHHHHHHhcCCCCCceeeeece
Q 030275          112 GWQEVIIE-----GQDKVFKDVIEPLESVSVNLIPT--------GKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAAS  178 (180)
Q Consensus       112 ~W~~v~~~-----G~dv~F~D~~~~~eNVsV~Vsp~--------~k~sI~dlG~PeeVa~~L~~~~~~~p~~~a~Li~a~  178 (180)
                      ||.++.++     |+++.||+..+.++||+|+|+|+        ++++|+|||+||+|++.|++++++.+.++++||+++
T Consensus       122 GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eLl~a~  201 (262)
T PLN00066        122 GWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSME  201 (262)
T ss_pred             CCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccceeEee
Confidence            99999987     66666666668899999999997        569999999999999999999999999999999987


Q ss_pred             e
Q 030275          179 E  179 (180)
Q Consensus       179 e  179 (180)
                      +
T Consensus       202 ~  202 (262)
T PLN00066        202 V  202 (262)
T ss_pred             e
Confidence            5

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.86  E-value=2.7e-21  Score=166.99  Aligned_cols=120  Identities=20%  Similarity=0.352  Sum_probs=91.1

Q ss_pred             CcccccchHHHHHHHHHHhHhhhcCCCCcccc-c----------ccccCceeeeeC-----------CCCeEEeccCCCe
Q 030275           57 NSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFA-A----------ESNKGFLSVTDK-----------KDGYSFVYPFGWQ  114 (180)
Q Consensus        57 ~~~~~~~RR~aL~~~~~aa~~s~~~~a~~A~A-e----------~~~~gf~~y~D~-----------~dGYsf~yP~~W~  114 (180)
                      .....+.||+.|..++.+.+.+.... .++.| |          ....||.-|.-.           -.||+|+||.||+
T Consensus        38 ~~~~~~~rr~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~  116 (263)
T PLN00067         38 RAAVVIHRRELLLGLALAPLILIAPE-PPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWK  116 (263)
T ss_pred             cccchhHHHHHHhhhhhhhhhhccCC-chhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCc
Confidence            44556789999864444433333322 22222 1          334578777532           2389999999999


Q ss_pred             eeeec----C-----------ceeeeeCCCCCCcceEEEEecC------CCCCcccCCCHHHHHHHHHHHhcCCCCCcee
Q 030275          115 EVIIE----G-----------QDKVFKDVIEPLESVSVNLIPT------GKQDIRDFGPPQEVAETLIKKFLAPPTQKTK  173 (180)
Q Consensus       115 ~v~~~----G-----------~dv~F~D~~~~~eNVsV~Vsp~------~k~sI~dlG~PeeVa~~L~~~~~~~p~~~a~  173 (180)
                      ++++.    |           +|++|+|++  ++||+|+|+|+      ++++|+|||+|++|+++|++.++++++++++
T Consensus       117 ~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~e  194 (263)
T PLN00067        117 QTRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDE  194 (263)
T ss_pred             CccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcc
Confidence            98886    4           899999955  68999999997      4589999999999999999999999999999


Q ss_pred             eeecee
Q 030275          174 IIAASE  179 (180)
Q Consensus       174 Li~a~e  179 (180)
                      ||++++
T Consensus       195 LLeAs~  200 (263)
T PLN00067        195 LLETSV  200 (263)
T ss_pred             eEEeee
Confidence            999975

>PLN03152 hypothetical protein; Provisional

Probab=98.95  E-value=1.1e-09  Score=93.71  Aligned_cols=98  Identities=28%  Similarity=0.446  Sum_probs=67.2

Q ss_pred             ccchHHHHHHHHHHhHhhhc--CCCCccccc------------ccccCceeeeeCCCCeEEeccCCCeeee----ec---
Q 030275           61 KCGRRQMIAVGVIAPWVSLV--NQTPPSFAA------------ESNKGFLSVTDKKDGYSFVYPFGWQEVI----IE---  119 (180)
Q Consensus        61 ~~~RR~aL~~~~~aa~~s~~--~~a~~A~Ae------------~~~~gf~~y~D~~dGYsf~yP~~W~~v~----~~---  119 (180)
                      ...||+.+.-.++++..++.  .+...++|+            -+...|-.|  -++||++-||-+++.+-    +.   
T Consensus        30 ~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~--~g~gf~~~~pp~f~di~e~~~~~~g~  107 (241)
T PLN03152         30 GASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQF--YGDGFSIRVPPSFEDIMEPEDYNAGL  107 (241)
T ss_pred             cccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhh--hCCceEEeCCCChhhhcChhhccccc
Confidence            44588877544443333332  234445554            123446666  59999999999998532    11   


Q ss_pred             ---C-------ceeeeeCCCCCCcceEEEEecCC--------CCCcccCCCHHHHHHHHH
Q 030275          120 ---G-------QDKVFKDVIEPLESVSVNLIPTG--------KQDIRDFGPPQEVAETLI  161 (180)
Q Consensus       120 ---G-------~dv~F~D~~~~~eNVsV~Vsp~~--------k~sI~dlG~PeeVa~~L~  161 (180)
                         |       -.++|..+ |.+|||||+|+|++        .++|+|||+|+|||+.|+
T Consensus       108 ~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v  166 (241)
T PLN03152        108 SLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV  166 (241)
T ss_pred             ceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC
Confidence               2       24677775 78999999999974        599999999999997766

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=92.01  E-value=0.25  Score=40.16  Aligned_cols=46  Identities=13%  Similarity=0.140  Sum_probs=27.6

Q ss_pred             eeeeeCCCCeEEeccCCCeeeeecCceeeeeCCCCCCcceEEEEec
Q 030275           96 LSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIP  141 (180)
Q Consensus        96 ~~y~D~~dGYsf~yP~~W~~v~~~G~dv~F~D~~~~~eNVsV~Vsp  141 (180)
                      +.|..++.=|+..||.+|.|.+-......|-|+..=+.|..+..-.
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk   47 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYK   47 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE
T ss_pred             CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEe
Confidence            5688888889999999999988433455688888889999876654

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		5e-10
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		5e-06

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEG-QDKVFKDVIEPLESVS--VNLIPTGKQDI 147
           +  G  +  D  DGY F+YP GW +V +E   D VF D+IE  E+VS  VN + + K  +
Sbjct: 4   ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKS-L 62
Query: 148 RDFGPPQEVAETLIKKFLAPPT--QKTKIIAAS 178
            + G P+EV + L++  +AP    + + +IAA+
Sbjct: 63  EELGSPEEVGDRLLRNIIAPSESGRSSALIAAT 95

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 99  TDKKDGYSFVYPFGWQEVIIEGQ----DKVFKDVIEPLESVSVNL--IPTGKQDIRDFGP 152
           +D KDGY F+YP GW  V ++G     D VF+D+IE  E++SV +  IP+ K  + D G 
Sbjct: 18  SDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LTDLGT 76
Query: 153 PQEVAETLIK 162
             +V    +K
Sbjct: 77  ATDVGYRFMK 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	5e-23
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	8e-19
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	3e-18
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	1e-17

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 78.0 bits (191), Expect = 8e-19
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIP-TGKQ 145
            + +  G  +  D  DGY F+YP GW +V +E   D VF D+IE  E+VSV +      +
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTK 60

Query: 146 DIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASE 179
            + + G P+EV + L++  +AP    + + +IAA+ 
Sbjct: 61  SLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATS 96

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 76.8 bits (188), Expect = 3e-18
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGK 144
             +++  F +     DG+    P  W   +EV   GQ   F+D  +   +V V + PT K
Sbjct: 2   KPKTDTDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDK 59

Query: 145 QDIRDFGPPQE----VAETLIKKFLAPPTQKTKIIAASEV 180
           + I DFG P++    V   L ++  +  T       +  V
Sbjct: 60  KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAV 99

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 74.9 bits (183), Expect = 1e-17
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPT- 142
                      +D KDGY F+YP GW  V ++    G D VF+D+IE  E++SV +    
Sbjct: 7   GGVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIP 66

Query: 143 GKQDIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASE 179
             + + D G   +V    +K         ++ ++I A  
Sbjct: 67  SDKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEA 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.82
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.89
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.87
3hlz_A	269	Uncharacterized protein BT_1490; NP_810393.1, stru	88.79

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.82  E-value=4.6e-25  Score=176.75  Aligned_cols=90  Identities=30%  Similarity=0.539  Sum_probs=85.3

Q ss_pred             ccccCceeeeeCCCCeEEeccCCCeeeeec----CceeeeeCCCCCCcceEEEEecCCC-CCcccCCCHHHHHHHHHHHh
Q 030275           90 ESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKF  164 (180)
Q Consensus        90 ~~~~gf~~y~D~~dGYsf~yP~~W~~v~~~----G~dv~F~D~~~~~eNVsV~Vsp~~k-~sI~dlG~PeeVa~~L~~~~  164 (180)
                      +.++||++|+|+.|||+|+||++|++++++    |+|++|+|+++.++||+|+|+|+.+ ++|+|||+|++|+++|++++
T Consensus         9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~   88 (170)
T 2lnj_A            9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV   88 (170)
Confidence            356899999999999999999999999988    9999999999999999999999998 99999999999999999999


Q ss_pred             cCCC--CCceeeeecee
Q 030275          165 LAPP--TQKTKIIAASE  179 (180)
Q Consensus       165 ~~~p--~~~a~Li~a~e  179 (180)
                      ++++  ++.++||++.+
T Consensus        89 ~~~~~~~~~a~li~a~~  105 (170)
T 2lnj_A           89 NDASQGDRQAELINAEA  105 (170)
Confidence            9988  78999999875

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.89  E-value=4e-23  Score=163.67  Aligned_cols=89  Identities=36%  Similarity=0.721  Sum_probs=83.3

Q ss_pred             cccCceeeeeCCCCeEEeccCCCeeeeec-CceeeeeCCCCCCcceEEEEecCCC-CCcccCCCHHHHHHHHHHHhcCCC
Q 030275           91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKFLAPP  168 (180)
Q Consensus        91 ~~~gf~~y~D~~dGYsf~yP~~W~~v~~~-G~dv~F~D~~~~~eNVsV~Vsp~~k-~sI~dlG~PeeVa~~L~~~~~~~p  168 (180)
                      .++||++|.|+++||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+|++|+++|++++++++
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~   83 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS   83 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence            46899999999999999999999999998 9999999999999999999999997 999999999999999999999987


Q ss_pred             --CCceeeeecee
Q 030275          169 --TQKTKIIAASE  179 (180)
Q Consensus       169 --~~~a~Li~a~e  179 (180)
                        ++.++||++.+
T Consensus        84 ~~~~~~~l~~a~~   96 (165)
T 2xb3_A           84 ESGRSSALIAATS   96 (165)
T ss_dssp             TSSCEEEEEEEEE
T ss_pred             CCCcceEEEEeee
Confidence              78999999875

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.87  E-value=6.5e-23  Score=166.65  Aligned_cols=88  Identities=25%  Similarity=0.447  Sum_probs=70.7

Q ss_pred             ccccCceeeeeCCCCeEEeccCCCeeee---ecCceeeeeCCCCCCcceEEEEecCCCCCcccCCCHHH----HHHHHHH
Q 030275           90 ESNKGFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE----VAETLIK  162 (180)
Q Consensus        90 ~~~~gf~~y~D~~dGYsf~yP~~W~~v~---~~G~dv~F~D~~~~~eNVsV~Vsp~~k~sI~dlG~Pee----Va~~L~~  162 (180)
                      +.++||++|.  +|||+|+||.+|+++.   ++|+|++|+|+++.++||+|+|+|+++++|+|||+|++    |+++|++
T Consensus         4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~   81 (177)
T 1v2b_A            4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR   81 (177)
T ss_dssp             ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--
T ss_pred             CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHH
Confidence            4568999997  9999999999999654   56999999999999999999999999999999999999    6889999


Q ss_pred             HhcCCC-----C------Cceeeeecee
Q 030275          163 KFLAPP-----T------QKTKIIAASE  179 (180)
Q Consensus       163 ~~~~~p-----~------~~a~Li~a~e  179 (180)
                      ++++++     +      ++++||++.+
T Consensus        82 ~~~~~~~~~~~gf~~~~~~~a~ll~a~~  109 (177)
T 1v2b_A           82 QAYSGKTDSEGGFESDAVAIANVLETST  109 (177)
T ss_dssp             ----------------CCCEEEEEEEEE
T ss_pred             HhhcccccccCCcccCcccceEEEEeEE
Confidence            998862     3      7899999875

>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}

Probab=88.79  E-value=0.55  Score=40.07  Aligned_cols=46  Identities=13%  Similarity=0.121  Sum_probs=36.7

Q ss_pred             eeeeeCCCCeEEeccCCCeeeeecCceeeeeCCCCCCcceEEEEec
Q 030275           96 LSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIP  141 (180)
Q Consensus        96 ~~y~D~~dGYsf~yP~~W~~v~~~G~dv~F~D~~~~~eNVsV~Vsp  141 (180)
                      +.|..|+.=|+..||.+|+|++-..-.-.|.+|..=+.|..+.--.
T Consensus         5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk   50 (269)
T 3hlz_A            5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK   50 (269)
T ss_dssp             EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE
T ss_pred             ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc
Confidence            5688899999999999999987654455677888888998866544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	3e-16

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 70.5 bits (172), Expect = 3e-16
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 94  GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
            F +     DG+    P  W   +EV   GQ   F+D  +   +V V + PT K+ I DF
Sbjct: 2   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 59

Query: 151 GPPQE----VAETLIKKFLAPPTQK 171
           G P++    V   L ++  +  T  
Sbjct: 60  GSPEQFLSQVDYLLGRQAYSGKTDS 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.8

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.80  E-value=2.3e-20  Score=147.42  Aligned_cols=85  Identities=24%  Similarity=0.444  Sum_probs=68.3

Q ss_pred             cCceeeeeCCCCeEEeccCCCeeee---ecCceeeeeCCCCCCcceEEEEecCCCCCcccCCCHHHHHHHH----HHHhc
Q 030275           93 KGFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETL----IKKFL  165 (180)
Q Consensus        93 ~gf~~y~D~~dGYsf~yP~~W~~v~---~~G~dv~F~D~~~~~eNVsV~Vsp~~k~sI~dlG~PeeVa~~L----~~~~~  165 (180)
                      ++|++|.|  |||+|+||++|+++.   +.|+|++|+|+++.++||+|+|+|+++++|++||+|+++++++    +++++
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~   78 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY   78 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhh
Confidence            47999975  899999999998654   5589999999999999999999999999999999999976665    44444


Q ss_pred             CCC-----------CCceeeeecee
Q 030275          166 APP-----------TQKTKIIAASE  179 (180)
Q Consensus       166 ~~p-----------~~~a~Li~a~e  179 (180)
                      .++           ++.++|++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~a~v~~a~~  103 (171)
T d1v2ba_          79 SGKTDSEGGFESDAVAIANVLETST  103 (171)
T ss_dssp             -------------CCCEEEEEEEEE
T ss_pred             cccccccccccccccceeEEEEeee
Confidence            432           56889999865