Citrus Sinensis ID: 030306

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
METDPYNPFDQSLIKQLNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSLDSWVLCKIYWESEIIENEDFSDEEEE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEEcccccEEEEEEEEEEEccccccccccccEEEEEEcccccccccccEEEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHccccccccEEEEEEcccccccccccHccccccccccccccccHHHHcccccEEEEEccccccccccccccHHcccccEEEccccccEEccccccEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccEEEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
metdpynpfdqSLIKQLNNkiidepvefpdlitteindhhpadffpgsLLRAFCTSfnnvqlpkggdrdrekgcyvltpkhllygltwlperrakngywkpygyidgriFGACGKLVAIKQSftfhepgenigrktdwnmTEYRLLKHSCTSLDSWVLCKIYWeseiienedfsdeeee
Flexible Loop (DISEMBL)
metdpynpfDQSLIKQLNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNnvqlpkggdrdrEKGCYVLtpkhllygltwlpeRRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFtfhepgenigrktdWNMTEYRLLKHSCTSLDSWVLCKIYWEseiienedfsdeeee
Low Complexity Region (SEG)
METDPYNPFDQSLIKQLNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSLDSWVLCKIYWeseiienedfsdeeee
Disordered region (IsUnstruct)
************LIKQLNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSLDSWVLCKIYWESEII***********
Disordered Region (DISOPRED)
METDPYNPFDQSLIKQLNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSLDSWVLCKIYW****************
Disordered Region (DISEMBL)
********FDQSLIKQLNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSLDSWVLCKIYWESEIIEN*********
Disordered Region (DISPRO)
***DPYNPFDQSLIKQLNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSLDSWVLCKIYWESE*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METDPYNPFDQSLIKQLNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSLDSWVLCKIYWESEIIENEDFSDEEEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q93VY3	297	NAC domain-containing pro	yes	no	0.502	0.303	0.406	3e-11
Q9LDY8	317	NAC domain-containing pro	no	no	0.575	0.324	0.330	5e-10
Q9C932	317	NAC domain-containing pro	no	no	0.502	0.283	0.385	6e-10
Q52QH4	318	NAC domain-containing pro	yes	no	0.837	0.471	0.267	1e-09
Q53NF7	329	NAC domain-containing pro	no	no	0.648	0.352	0.342	2e-09
Q7F2L3	303	NAC domain-containing pro	no	no	0.569	0.336	0.371	5e-08
Q39013	289	NAC domain-containing pro	no	no	0.497	0.307	0.38	8e-08
O49255	268	NAC transcription factor	no	no	0.653	0.436	0.340	1e-07
A0SPJ6	396	NAC transcription factor	N/A	no	0.513	0.232	0.315	1e-07
A0SPJ9	402	NAC transcription factor	N/A	no	0.491	0.218	0.317	3e-07

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I  A G+ V IK++  F+    
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITADGRRVGIKKALVFYAGKA 124

Query: 131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
             G KT+W M EYRL++HS     + LD WVLC+IY
Sbjct: 125 PKGTKTNWIMHEYRLIEHSRSHGSSKLDDWVLCRIY 160

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    ++    G+ V IK++  F+    
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKVISTEGRRVGIKKALVFYIGKA 124

Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIYWESEIIENEDFSD 175
             G KT+W M EYRL+    ++  T LD WVLC+IY +    + + +++
Sbjct: 125 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQTSAQKQAYNN 173

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C932|NAC19_ARATH NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I    G+ V IK++  F+    
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIISTEGQRVGIKKALVFYIGKA 124

Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIY 162
             G KT+W M EYRL+    ++  T LD WVLC+IY
Sbjct: 125 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 160

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 33/183 (18%)

Query: 6   YNPFDQSLIKQ-LNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPK 64
           ++P D+ L+   L  K+  +P+  P +   ++    P D    +L               
Sbjct: 27  FHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFG------------- 73

Query: 65  GGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFT 124
                  K  Y  TP+   Y     P R A  GYWK  G           + V IK++  
Sbjct: 74  ------RKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALV 127

Query: 125 FHEPGENIGRKTDWNMTEYRLL--------KHSCTSLDSWVLCKIY-----WESEIIENE 171
           F+      G KTDW M EYRL         K     LD WVLC++Y     WE   +E +
Sbjct: 128 FYSGKAPRGVKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNWEKVKLEQQ 187

Query: 172 DFS 174
           D +
Sbjct: 188 DVA 190

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53NF7|NAC71_ORYSJ NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 62/140 (44%), Gaps = 24/140 (17%)

Query: 57  FNNVQLPK---GGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGAC 113
           FN   LP+   GG    EK  Y  +P+   Y     P R A  GYWK  G  D  +    
Sbjct: 49  FNPWDLPERAMGG----EKEWYFFSPRDRKYPNGQRPNRAAGTGYWKATG-ADKPV--GS 101

Query: 114 GKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLL--------------KHSCTSLDSWVLC 159
            + VAIK++  F+      G KT+W M EYRL                H+   LD WVLC
Sbjct: 102 PRAVAIKKALVFYAGKPPKGVKTNWIMHEYRLADVDRSAAARKLSKSSHNALRLDDWVLC 161

Query: 160 KIYWESEIIENEDFSDEEEE 179
           +IY +  +IE  D  D  E+
Sbjct: 162 RIYNKKGVIERYDTVDAGED 181

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7F2L3|NAC48_ORYSJ NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 11/113 (9%)

Query: 57  FNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKL 116
           F+  QLP+      EK  Y  +P+   Y     P R A +GYWK  G  D  +     K 
Sbjct: 49  FDPWQLPRMALYG-EKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATG-ADKPV--GSPKP 104

Query: 117 VAIKQSFTFHEPGENIGRKTDWNMTEYRLL-------KHSCTSLDSWVLCKIY 162
           VAIK++  F+      G KT+W M EYRL        K +   LD WVLC+IY
Sbjct: 105 VAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIY 157

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39013|NAC2_ARATH NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G  D  I     K V IK++  F+    
Sbjct: 60  EKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATG-ADKPI--GLPKPVGIKKALVFYAGKA 116

Query: 131 NIGRKTDWNMTEYRLL--------KHSCTSLDSWVLCKIY 162
             G KT+W M EYRL         K +   LD WVLC+IY
Sbjct: 117 PKGEKTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIY 156

Arabidopsis thaliana (taxid: 3702)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 57  FNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKL 116
           F+  QLP+  +   E   Y  +P+   Y     P R A +GYWK  G  D  I       
Sbjct: 49  FDPWQLPEKTEFG-ENEWYFFSPRERKYPNGVRPNRAAVSGYWKATG-TDKAIHSGSSN- 105

Query: 117 VAIKQSFTFHEPGENIGRKTDWNMTEYRL--------LKHSCTSLDSWVLCKIYWE---S 165
           V +K++  F++     G KTDW M EYRL         ++    LD WVLC+IY +   S
Sbjct: 106 VGVKKALVFYKGRPPKGIKTDWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRGAS 165

Query: 166 EII-ENEDFSDE 176
           +++ E E F DE
Sbjct: 166 KLLNEQEGFMDE 177

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 19/111 (17%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGK-LVAIKQSFTFHEPG 129
           E+  Y  +P+   Y     P R A +GYWK  G     +   CG+  V +K++  F+   
Sbjct: 81  EQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGK 140

Query: 130 ENIGRKTDWNMTEYRLLKHSCTS------------------LDSWVLCKIY 162
              G KT+W M EYRL   S ++                  LD WVLC+IY
Sbjct: 141 PPKGLKTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIY 191

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 19/107 (17%)

Query: 75  YVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGK-LVAIKQSFTFHEPGENIG 133
           Y  +P+   Y     P R A +GYWK  G     +   CG+  V +K +  F+      G
Sbjct: 85  YFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFYRGKPPKG 144

Query: 134 RKTDWNMTEYRLLKHSCTS------------------LDSWVLCKIY 162
            KT+W M EYRL   S ++                  LD WVLC+IY
Sbjct: 145 LKTNWIMHEYRLTDASSSAATSRPPPVTGGSRAASLRLDDWVLCRIY 191

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
224128213	343	NAC domain protein, IPR003441 [Populus t	0.569	0.297	0.379	3e-10
18416983	297	NAC domain-containing protein 72 [Arabid	0.502	0.303	0.406	1e-09
297799242	314	hypothetical protein ARALYDRAFT_492058 [	0.502	0.286	0.406	2e-09
145334143	314	NAC domain-containing protein 72 [Arabid	0.502	0.286	0.406	2e-09
312281511	305	unnamed protein product [Thellungiella h	0.502	0.295	0.406	3e-09
224069402	337	NAC domain protein, IPR003441 [Populus t	0.810	0.430	0.306	5e-09
356547188	349	PREDICTED: NAC domain-containing protein	0.759	0.389	0.325	5e-09
23397295	292	unknown protein [Arabidopsis thaliana]	0.502	0.308	0.395	8e-09
449460145	319	PREDICTED: NAC domain-containing protein	0.502	0.282	0.406	9e-09
351726966	345	NAC domain protein NAC4 [Glycine max] gi	0.502	0.260	0.406	9e-09

>gi|224128213|ref|XP_002329109.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222869778|gb|EEF06909.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I  + G+ V IK++  F+    
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITSDGRKVGIKKALVFYIGKA 124

Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIYWESEIIENEDFS 174
             G KT+W M EYRL+    KH  T LD WVLC+IY +  I   +  S
Sbjct: 125 PKGTKTNWIMHEYRLIESSRKHGSTKLDEWVLCRIYKKKSIAAQKSMS 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416983|ref|NP_567773.1| NAC domain-containing protein 72 [Arabidopsis thaliana] gi|75163205|sp|Q93VY3.1|NAC72_ARATH RecName: Full=NAC domain-containing protein 72; Short=ANAC072; AltName: Full=Protein RESPONSIVE TO DESICCATION 26 gi|16226943|gb|AAL16305.1|AF428375_1 AT4g27410/F27G19_10 [Arabidopsis thaliana] gi|15982729|gb|AAL09817.1| unknown protein [Arabidopsis thaliana] gi|20259263|gb|AAM14367.1| unknown protein [Arabidopsis thaliana] gi|21593359|gb|AAM65308.1| unknown [Arabidopsis thaliana] gi|24417372|gb|AAN60296.1| unknown [Arabidopsis thaliana] gi|332659934|gb|AEE85334.1| NAC domain-containing protein 72 [Arabidopsis thaliana]

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I  A G+ V IK++  F+    
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITADGRRVGIKKALVFYAGKA 124

Query: 131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
             G KT+W M EYRL++HS     + LD WVLC+IY
Sbjct: 125 PKGTKTNWIMHEYRLIEHSRSHGSSKLDDWVLCRIY 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799242|ref|XP_002867505.1| hypothetical protein ARALYDRAFT_492058 [Arabidopsis lyrata subsp. lyrata] gi|297313341|gb|EFH43764.1| hypothetical protein ARALYDRAFT_492058 [Arabidopsis lyrata subsp. lyrata]

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I  A G+ V IK++  F+    
Sbjct: 84  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITADGRRVGIKKALVFYAGKA 141

Query: 131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
             G KT+W M EYRL++HS     + LD WVLC+IY
Sbjct: 142 PKGTKTNWIMHEYRLIEHSRSHESSKLDDWVLCRIY 177

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334143|ref|NP_001078452.1| NAC domain-containing protein 72 [Arabidopsis thaliana] gi|4972066|emb|CAB43873.1| putative protein [Arabidopsis thaliana] gi|7269595|emb|CAB81391.1| putative protein [Arabidopsis thaliana] gi|332659935|gb|AEE85335.1| NAC domain-containing protein 72 [Arabidopsis thaliana]

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I  A G+ V IK++  F+    
Sbjct: 84  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITADGRRVGIKKALVFYAGKA 141

Query: 131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
             G KT+W M EYRL++HS     + LD WVLC+IY
Sbjct: 142 PKGTKTNWIMHEYRLIEHSRSHGSSKLDDWVLCRIY 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281511|dbj|BAJ33621.1| unnamed protein product [Thellungiella halophila]

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I  A G  V IK++  F+    
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITADGHRVGIKKALVFYAGKA 124

Query: 131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
             G KT+W M EYRL++HS     + LD WVLC+IY
Sbjct: 125 PKGTKTNWIMHEYRLIEHSRSHGSSKLDDWVLCRIY 160

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069402|ref|XP_002326347.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222833540|gb|EEE72017.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 31/176 (17%)

Query: 6   YNPFDQSLIKQ-LNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPK 64
           ++P D+ LI   L N++   P+  P  I  EI+ +                 +N  +LPK
Sbjct: 17  FHPSDEELIVHYLKNRVSSSPL--PASIIAEIDLYK----------------YNPWELPK 58

Query: 65  GGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKL-VAIKQSF 123
                 ++  Y  TP+   Y     P R A +GYWK  G  D  IF + G   + +K++ 
Sbjct: 59  KALFGVDE-WYFFTPRDRKYPNGARPNRAAASGYWKATG-TDKSIFNSFGTAKIGVKKTL 116

Query: 124 TFHEPGENIGRKTDWNMTEYRLL---------KHSCTSLDSWVLCKIYWESEIIEN 170
            F+E     G KTDWNM EYRLL         +     LD WVLC++  ++ I  N
Sbjct: 117 VFYEGRPPKGLKTDWNMHEYRLLDAMIWNNSKRKGSMRLDDWVLCRVRQKNSIPRN 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547188|ref|XP_003541998.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 30/166 (18%)

Query: 6   YNPFDQSLIKQ-LNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPK 64
           ++P D+ LI   L NKI   P+  P  I  EIN +                 +N  +LP 
Sbjct: 18  FHPSDEELIVHYLQNKISSRPL--PASIIAEINLYK----------------YNPWELPN 59

Query: 65  GGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACG-KLVAIKQSF 123
                 E+  Y  +P+   Y     P R A +GYWK  G  D  I  +CG K + +K++ 
Sbjct: 60  KSLFGEEE-WYFFSPRDRKYPNGLRPNRAAASGYWKATG-TDKPILSSCGSKRIGVKKAL 117

Query: 124 TFHEPGENIGRKTDWNMTEYRLLKHSCTS--------LDSWVLCKI 161
            F+      G KTDW M EYRL+    TS        LD WVLC++
Sbjct: 118 VFYSGRPPKGAKTDWIMNEYRLVDTITTSSRLKGSMRLDDWVLCRV 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23397295|gb|AAN31929.1| unknown protein [Arabidopsis thaliana]

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I  A G+ V IK++  F+    
Sbjct: 62  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITADGRRVGIKKALVFYAGKA 119

Query: 131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
             G KT+W M EYRL++HS     + L  WVLC+IY
Sbjct: 120 PKGTKTNWIMHEYRLIEHSRSHGSSKLGDWVLCRIY 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460145|ref|XP_004147806.1| PREDICTED: NAC domain-containing protein 72-like [Cucumis sativus] gi|449476741|ref|XP_004154821.1| PREDICTED: NAC domain-containing protein 72-like [Cucumis sativus]

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I    GK V IK++  F+    
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIISTQGKKVGIKKALVFYVGKA 124

Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIY 162
             G KT+W M EYRL+    K   T LD WVLC+IY
Sbjct: 125 PKGTKTNWIMHEYRLIDTSRKTGSTKLDDWVLCRIY 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726966|ref|NP_001238424.1| NAC domain protein NAC4 [Glycine max] gi|62546189|gb|AAX85981.1| NAC4 protein [Glycine max] gi|66394516|gb|AAY46124.1| NAC domain protein NAC4 [Glycine max]

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I    G+ V IK++  F+    
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITTEGRKVGIKKALVFYIGKA 124

Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIY 162
             G KT+W M EYRLL    K++ T LD WVLC+IY
Sbjct: 125 PKGTKTNWIMHEYRLLDSSRKNTGTKLDDWVLCRIY 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2124014	314	RD26 "RESPONSIVE TO DESICCATIO	0.502	0.286	0.406	6.5e-12
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.502	0.283	0.395	1.5e-10
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.502	0.283	0.385	1.5e-10
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.575	0.384	0.342	1.2e-08
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.497	0.351	0.393	1.3e-08
TAIR|locus:1009023241	279	AT3G12977 [Arabidopsis thalian	0.497	0.318	0.354	1.4e-08
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.497	0.307	0.38	2.5e-08
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.620	0.440	0.308	2.8e-08
TAIR|locus:2827676	276	NAC036 "NAC domain containing	0.547	0.355	0.330	3.7e-08
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.553	0.295	0.345	4.6e-08

TAIR|locus:2124014 RD26 "RESPONSIVE TO DESICCATION 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 6.5e-12, P = 6.5e-12
 Identities = 39/96 (40%), Positives = 52/96 (54%)

Query:    71 EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
             EK  Y  +P+   Y     P R A +GYWK  G    +I  A G+ V IK++  F+    
Sbjct:    84 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIITADGRRVGIKKALVFYAGKA 141

Query:   131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
               G KT+W M EYRL++HS     + LD WVLC+IY
Sbjct:   142 PKGTKTNWIMHEYRLIEHSRSHGSSKLDDWVLCRIY 177

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 38/96 (39%), Positives = 50/96 (52%)

Query:    71 EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
             EK  Y  +P+   Y     P R A +GYWK  G    +I    G+ V IK++  F+    
Sbjct:    67 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIISTEGQRVGIKKALVFYIGKA 124

Query:   131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
               G KT+W M EYRL++ S     T LD WVLC+IY
Sbjct:   125 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 37/96 (38%), Positives = 50/96 (52%)

Query:    71 EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
             EK  Y  +P+   Y     P R A +GYWK  G    ++    G+ V IK++  F+    
Sbjct:    67 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKVISTEGRRVGIKKALVFYIGKA 124

Query:   131 NIGRKTDWNMTEYRLLKHS----CTSLDSWVLCKIY 162
               G KT+W M EYRL++ S     T LD WVLC+IY
Sbjct:   125 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 39/114 (34%), Positives = 53/114 (46%)

Query:    57 FNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKL 116
             F+  QLP+  +   E   Y  +P+   Y     P R A +GYWK  G  D  I       
Sbjct:    49 FDPWQLPEKTEFG-ENEWYFFSPRERKYPNGVRPNRAAVSGYWKATG-TDKAIHSGSSN- 105

Query:   117 VAIKQSFTFHEPGENIGRKTDWNMTEYRL--------LKHSCTSLDSWVLCKIY 162
             V +K++  F++     G KTDW M EYRL         ++    LD WVLC+IY
Sbjct:   106 VGVKKALVFYKGRPPKGIKTDWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIY 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 39/99 (39%), Positives = 47/99 (47%)

Query:    71 EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
             EK  Y  +P+   Y     P R A  GYWK  G  D  I G   K V IK++  F+    
Sbjct:    63 EKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATG-ADKPI-GR-PKPVGIKKALVFYSGKP 119

Query:   131 NIGRKTDWNMTEYRLL-------KHSCTSLDSWVLCKIY 162
               G KT+W M EYRL        K +   LD WVLC+IY
Sbjct:   120 PNGEKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIY 158

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:1009023241 AT3G12977 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 34/96 (35%), Positives = 46/96 (47%)

Query:    72 KGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGEN 131
             K  Y  + K   Y   +   R    GYWK  G    R     G LV ++++  F+     
Sbjct:    72 KEWYFYSQKDRKYATGYRTNRATATGYWKATG--KDRAIQRNGGLVGMRKTLVFYRGRSP 129

Query:   132 IGRKTDWNMTEYRL----LKHSCTSLDS-WVLCKIY 162
              GRKTDW M E+RL    L HS  SL+  WVLC+++
Sbjct:   130 KGRKTDWVMHEFRLQGKLLHHSPNSLEEEWVLCRVF 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 38/100 (38%), Positives = 47/100 (47%)

Query:    71 EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
             EK  Y  +P+   Y     P R A +GYWK  G  D  I     K V IK++  F+    
Sbjct:    60 EKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATG-ADKPI--GLPKPVGIKKALVFYAGKA 116

Query:   131 NIGRKTDWNMTEYRLL--------KHSCTSLDSWVLCKIY 162
               G KT+W M EYRL         K +   LD WVLC+IY
Sbjct:   117 PKGEKTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIY 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 38/123 (30%), Positives = 64/123 (52%)

Query:    46 PGSLLRAF--CTSFNNVQLPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYG 103
             P S++  F  C + +   LP  G+ ++E+  Y  + +   Y       R   +GYWK  G
Sbjct:    42 PASIIPEFDVCRA-DPWDLP--GNLEKER--YFFSTREAKYPNGNRSNRATGSGYWKATG 96

Query:   104 YIDGRIFGACG-KLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSL---DSWVLC 159
              ID R+  + G ++V +K++  F++     G +TDW M EYRL     +S+    +WVLC
Sbjct:    97 -IDKRVVTSRGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRLSSSPPSSMGPTQNWVLC 155

Query:   160 KIY 162
             +I+
Sbjct:   156 RIF 158

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2827676 NAC036 "NAC domain containing protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 34/103 (33%), Positives = 50/103 (48%)

Query:    62 LPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACG--KLVAI 119
             LP G  R  E+  Y   P+   +G    P R  + GYWK  G  D +I       +++ +
Sbjct:    51 LP-GLSRIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGS-DRKIISLSEPKRVIGL 108

Query:   120 KQSFTFHEPGENIGRKTDWNMTEYRLLKHSCTSLDSWVLCKIY 162
             K++  F+      G KTDW M E+R+   +C+     VLCKIY
Sbjct:   109 KKTLVFYRGRAPGGSKTDWVMNEFRM-PDNCSLPKDVVLCKIY 150

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0045792 "negative regulation of cell size" evidence=IMP

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 37/107 (34%), Positives = 51/107 (47%)

Query:    62 LPKGGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQ 121
             LPK      EK  Y    +   Y       R  ++GYWK  G  D  IF   G LV +K+
Sbjct:    66 LPKRAKMG-EKEFYFFCQRDRKYPTGMRTNRATESGYWKATGK-DKEIFKGKGCLVGMKK 123

Query:   122 SFTFHEPGENIGRKTDWNMTEYRLL-KHSCTSL-----DSWVLCKIY 162
             +  F+      G KT+W M EYRL  K+S  +L     D WV+C+++
Sbjct:   124 TLVFYRGRAPKGEKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVF 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	7e-17

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 72.2 bits (178), Expect = 7e-17
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 21/141 (14%)

Query: 7   NPFDQSLIKQ-LNNKIIDEPVEFPDLITT-EINDHHPADFFPGSLLRAFCTSFNNVQLPK 64
           +P D+ L+   L  K++ +P+   D+I   +I    P D                  LP 
Sbjct: 8   HPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWD------------------LPD 49

Query: 65  GGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFT 124
           G  +  ++  Y  +P+   Y       R   +GYWK  G  D  +    G++V +K++  
Sbjct: 50  GKAKGGDREWYFFSPRDRKYPNGSRTNRATGSGYWKATG-KDKPVLSKGGEVVGMKKTLV 108

Query: 125 FHEPGENIGRKTDWNMTEYRL 145
           F++     G KTDW M EYRL
Sbjct: 109 FYKGRAPKGEKTDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=7.7e-41  Score=255.37  Aligned_cols=124  Identities=28%  Similarity=0.533  Sum_probs=91.9

Q ss_pred             CCCccCCChHHHHHH-HHHhhcCCCCCCCCCceeeccC--CCCCCcCccchhhhhccccccccCCCCCCCCCCceEEEee
Q 030306            2 ETDPYNPFDQSLIKQ-LNNKIIDEPVEFPDLITTEIND--HHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLT   78 (179)
Q Consensus         2 ~g~RF~PTDeELI~~-L~~Ki~g~pl~~~~~~I~~~Dv--~~Pw~~Lp~~~~~~~~~~~~~~~~~~g~~~~~~~~wyFFs   78 (179)
                      -||||+|||+|||.+ |++|+.|.+++ ..++|+++||  +|||+ |++...                  .++.+||||+
T Consensus         3 ~G~rF~PtD~ELi~~yL~~k~~g~~~~-~~~~i~~~Diy~~~P~~-L~~~~~------------------~~~~~~yFF~   62 (129)
T PF02365_consen    3 PGFRFRPTDEELINHYLRPKILGEPLP-CEDVIHDVDIYSAHPWE-LPAKFK------------------GGDEEWYFFS   62 (129)
T ss_dssp             TTEEE---HHHHHHCTHHHHHTT-HHC-S-CHSEE--GGGS-GGG-CHHHSS------------------S-SSEEEEEE
T ss_pred             CceEecCChHHHHHHHHHHHhcCCCCC-cccceeecccCccChHH-hhhhcc------------------CCCceEEEEE
Confidence            389999999999999 99999999984 3488999999  99999 885322                  4567999999


Q ss_pred             ccccccCCCCCccccccceeeeecCcccceEeCCCCcEEEEEEeeeeeCCCCCCCCCcCeEEEEEEeC
Q 030306           79 PKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLL  146 (179)
Q Consensus        79 ~~~~k~~~g~R~~R~~~~G~Wk~~G~~~~~I~~~~g~~vG~kk~l~Fy~g~~~~~~kT~W~M~EY~l~  146 (179)
                      ++++++.++.|.+|++++|+||++| +.++|.+.+|.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        63 ~~~~~~~~~~r~~R~~~~G~Wk~~g-~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   63 PRKKKYPNGGRPNRVTGGGYWKSTG-KEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             E----------S-EEETTEEEEEEC-EEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ecccccCCcccccccccceEEeecc-cccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            9999999999999999999999999 999999778999999999999998888899999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		1e-10
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		1e-10
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		4e-08

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I    G+ V IK++  F+    
Sbjct: 73  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIISTEGQRVGIKKALVFYIGKA 130
Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIY 162
             G KT+W M EYRL+    ++  T LD WVLC+IY
Sbjct: 131 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 166

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 71  EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
           EK  Y  +P+   Y     P R A +GYWK  G    +I    G+ V IK++  F+    
Sbjct: 70  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIISTEGQRVGIKKALVFYIGKA 127
Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIY 162
             G KT+W M EYRL+    ++  T LD WVLC+IY
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 75  YVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGR 134
           Y  TP+   Y     P R A NGYWK  G    +     G+ + IK++  F+      G 
Sbjct: 72  YFFTPRDRKYPNGSRPNRAAGNGYWKATG--ADKPVAPRGRTLGIKKALVFYAGKAPRGV 129
Query: 135 KTDWNMTEYRL---------LKHSCTSLDSWVLCKIY 162
           KTDW M EYRL          K     LD WVLC++Y
Sbjct: 130 KTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1ut7_A	171	No apical meristem protein; transcription regulati	6e-18
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-16

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 75.8 bits (187), Expect = 6e-18
 Identities = 47/160 (29%), Positives = 63/160 (39%), Gaps = 26/160 (16%)

Query: 8   PFDQSLIKQ-LNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGG 66
           P D+ L+ Q L  K          +   ++    P                    LP   
Sbjct: 25  PTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWV------------------LP-NK 65

Query: 67  DRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFH 126
               EK  Y  +P+   Y     P R A +GYWK  G  D  I    G+ V IK++  F+
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG-TDKIISTE-GQRVGIKKALVFY 123

Query: 127 EPGENIGRKTDWNMTEYRL----LKHSCTSLDSWVLCKIY 162
                 G KT+W M EYRL     ++  T LD WVLC+IY
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 31/165 (18%)

Query: 8   PFDQSLIKQ-LNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPKGG 66
           P D  L++  L  K   + +  P +   ++    P D                  LP   
Sbjct: 23  PTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWD------------------LP-ER 63

Query: 67  DRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFH 126
                +  Y  TP+   Y     P R A NGYWK  G  D  +    G+ + IK++  F+
Sbjct: 64  ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATG-ADKPVAPR-GRTLGIKKALVFY 121

Query: 127 EPGENIGRKTDWNMTEYRLL---------KHSCTSLDSWVLCKIY 162
                 G KTDW M EYRL          K     LD WVLC++Y
Sbjct: 122 AGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=8.4e-53  Score=336.77  Aligned_cols=144  Identities=33%  Similarity=0.563  Sum_probs=124.7

Q ss_pred             CCccCCChHHHHHH-HHHhhcCCCCCCCCCceeeccC--CCCCCcCccchhhhhccccccccCCCCCCCCCCceEEEeec
Q 030306            3 TDPYNPFDQSLIKQ-LNNKIIDEPVEFPDLITTEIND--HHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTP   79 (179)
Q Consensus         3 g~RF~PTDeELI~~-L~~Ki~g~pl~~~~~~I~~~Dv--~~Pw~~Lp~~~~~~~~~~~~~~~~~~g~~~~~~~~wyFFs~   79 (179)
                      ||||+|||||||.| |++|+.|.++  +..+|+++||  +|||+ ||+.+.                  .++++|||||+
T Consensus        18 GfRF~PTDeELV~~YL~~K~~g~~~--~~~~I~evDvy~~~Pw~-Lp~~~~------------------~g~~ewYFFs~   76 (174)
T 3ulx_A           18 GFRFHPTDDELVEHYLCRKAAGQRL--PVPIIAEVDLYKFDPWD-LPERAL------------------FGAREWYFFTP   76 (174)
T ss_dssp             TCCCCCCHHHHHHHTHHHHHHTCCC--SSSCCEECCGGGSCGGG-SGGGCS------------------SCSSEEEEEEE
T ss_pred             cceeCCCHHHHHHHHHHHHhcCCCC--CcCeeeecccccCCchh-hhhhhc------------------cCCceEEEEec
Confidence            99999999999999 9999999999  7789999999  99999 998764                  44689999999


Q ss_pred             cccccCCCCCccccccceeeeecCcccceEeCCCCcEEEEEEeeeeeCCCCCCCCCcCeEEEEEEeCCCCC---------
Q 030306           80 KHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSC---------  150 (179)
Q Consensus        80 ~~~k~~~g~R~~R~~~~G~Wk~~G~~~~~I~~~~g~~vG~kk~l~Fy~g~~~~~~kT~W~M~EY~l~~~~~---------  150 (179)
                      +.+|+++|.|++|+|++||||++| ++++|.+ .|.+||+||+|+||.|+++++.+|+|+||||+|..+..         
T Consensus        77 r~~ky~~g~R~nR~t~~G~WkatG-~dk~I~~-~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~  154 (174)
T 3ulx_A           77 RDRKYPNGSRPNRAAGNGYWKATG-ADKPVAP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGS  154 (174)
T ss_dssp             CCC-----CCSCEEETTEEEEECS-CCEEECC-SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC----------
T ss_pred             cccccCCCCCceeecCCceEccCC-CCcEEee-CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCC
Confidence            999999999999999999999999 9999985 48999999999999999999999999999999998642         


Q ss_pred             CCCCCEEEEEEEEcCCccC
Q 030306          151 TSLDSWVLCKIYWESEIIE  169 (179)
Q Consensus       151 ~~~~~~VLCrI~~k~~~~~  169 (179)
                      ...++|||||||+|++..+
T Consensus       155 ~~~~~wVlCrvf~K~~~~~  173 (174)
T 3ulx_A          155 LRLDDWVLCRLYNKKNEWE  173 (174)
T ss_dssp             -CCSSEEEEEEEESCC---
T ss_pred             CCCCCEEEEEEEEcCCCcC
Confidence            1357899999999987654

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.6e-52  Score=333.28  Aligned_cols=145  Identities=34%  Similarity=0.515  Sum_probs=121.8

Q ss_pred             CCCccCCChHHHHHH-HHHhhcCCCCCCCCCceeeccC--CCCCCcCccchhhhhccccccccCCCCCCCCCCceEEEee
Q 030306            2 ETDPYNPFDQSLIKQ-LNNKIIDEPVEFPDLITTEIND--HHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLT   78 (179)
Q Consensus         2 ~g~RF~PTDeELI~~-L~~Ki~g~pl~~~~~~I~~~Dv--~~Pw~~Lp~~~~~~~~~~~~~~~~~~g~~~~~~~~wyFFs   78 (179)
                      -||||+|||||||.| |++|+.|.++  +..+|+++||  +|||+ ||+...                  .++++|||||
T Consensus        19 pGfRF~PTDeELv~~YL~~K~~g~~~--~~~~I~e~Diy~~~Pw~-Lp~~~~------------------~g~~ewyFFs   77 (171)
T 1ut7_A           19 PGFRFYPTDEELMVQYLCRKAAGYDF--SLQLIAEIDLYKFDPWV-LPNKAL------------------FGEKEWYFFS   77 (171)
T ss_dssp             TTEEECCCHHHHHHHTHHHHHTTCCC--SSCCSEECCGGGSCGGG-HHHHSS------------------SCSSEEEEEE
T ss_pred             CcceeCCChHHHHHHHHHHHhcCCCC--CCCeEeecccccCChhH-hhchhh------------------cCCccEEEEe
Confidence            389999999999999 9999999999  7789999999  99999 998764                  4578999999


Q ss_pred             ccccccCCCCCccccccceeeeecCcccceEeCCCCcEEEEEEeeeeeCCCCCCCCCcCeEEEEEEeCCCCC----CCCC
Q 030306           79 PKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSC----TSLD  154 (179)
Q Consensus        79 ~~~~k~~~g~R~~R~~~~G~Wk~~G~~~~~I~~~~g~~vG~kk~l~Fy~g~~~~~~kT~W~M~EY~l~~~~~----~~~~  154 (179)
                      ++.+|+++|.|++|+|++||||++| ++++|.. +|.+||+||+|+||.|+.+++.+|+|+||||+|.....    ...+
T Consensus        78 ~r~~k~~~g~R~~R~t~~G~Wk~tG-~~k~I~~-~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~  155 (171)
T 1ut7_A           78 PRDRKYPNGSRPNRVAGSGYWKATG-TDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLD  155 (171)
T ss_dssp             ECCC-------CCEEETTEEEEEEE-EEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------C
T ss_pred             ccccccCCCCcccccCCCCEEeccC-CCceEEe-cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCC
Confidence            9999999999999999999999999 9999985 57999999999999999999999999999999998742    2468


Q ss_pred             CEEEEEEEEcCCccC
Q 030306          155 SWVLCKIYWESEIIE  169 (179)
Q Consensus       155 ~~VLCrI~~k~~~~~  169 (179)
                      +|||||||+|+.+.+
T Consensus       156 ~~VlCrv~~k~~~~~  170 (171)
T 1ut7_A          156 DWVLCRIYKKQSSAQ  170 (171)
T ss_dssp             CEEEEEEEECC----
T ss_pred             CEEEEEEEEcCCCCC
Confidence            999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-19

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.3 bits (195), Expect = 1e-19
 Identities = 46/162 (28%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 6   YNPFDQSLIKQ-LNNKIIDEPVEFPDLITTEINDHHPADFFPGSLLRAFCTSFNNVQLPK 64
           + P D+ L+ Q L  K          +   ++    P                    LP 
Sbjct: 23  FYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWV------------------LP- 63

Query: 65  GGDRDREKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFT 124
                 EK  Y  +P+   Y     P R A +GYWK  G    +I    G+ V IK++  
Sbjct: 64  NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIISTEGQRVGIKKALV 121

Query: 125 FHEPGENIGRKTDWNMTEYRL----LKHSCTSLDSWVLCKIY 162
           F+      G KT+W M EYRL     ++  T LD WVLC+IY
Sbjct: 122 FYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-49  Score=311.99  Aligned_cols=140  Identities=36%  Similarity=0.541  Sum_probs=119.1

Q ss_pred             CCccCCChHHHHHH-HHHhhcCCCCCCCCCceeeccC--CCCCCcCccchhhhhccccccccCCCCCCCCCCceEEEeec
Q 030306            3 TDPYNPFDQSLIKQ-LNNKIIDEPVEFPDLITTEIND--HHPADFFPGSLLRAFCTSFNNVQLPKGGDRDREKGCYVLTP   79 (179)
Q Consensus         3 g~RF~PTDeELI~~-L~~Ki~g~pl~~~~~~I~~~Dv--~~Pw~~Lp~~~~~~~~~~~~~~~~~~g~~~~~~~~wyFFs~   79 (179)
                      ||||+|||+|||.| |++|+.|.|+  +.++|+++||  +|||+ ||+...                  .++++|||||+
T Consensus        20 G~RF~PTDeELv~~YL~~Ki~g~~l--~~~~I~~~Dvy~~~Pw~-Lp~~~~------------------~~~~~wyFft~   78 (166)
T d1ut7a_          20 GFRFYPTDEELMVQYLCRKAAGYDF--SLQLIAEIDLYKFDPWV-LPNKAL------------------FGEKEWYFFSP   78 (166)
T ss_dssp             TEEECCCHHHHHHHTHHHHHTTCCC--SSCCSEECCGGGSCGGG-HHHHSS------------------SCSSEEEEEEE
T ss_pred             ccccCCCcHHHHHHHHHHHHcCCCC--CcccceeccCCcCChhh-ccchhc------------------cCcceEEEEee
Confidence            89999999999999 9999999999  7789999999  99999 997654                  45788999999


Q ss_pred             cccccCCCCCccccccceeeeecCcccceEeCCCCcEEEEEEeeeeeCCCCCCCCCcCeEEEEEEeCCCCC----CCCCC
Q 030306           80 KHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRLLKHSC----TSLDS  155 (179)
Q Consensus        80 ~~~k~~~g~R~~R~~~~G~Wk~~G~~~~~I~~~~g~~vG~kk~l~Fy~g~~~~~~kT~W~M~EY~l~~~~~----~~~~~  155 (179)
                      +.++++++.|++|++++|+||++| ++++|. .+|.+||+|++|+||.++.+++.+|+|+||||+|.+...    ...++
T Consensus        79 ~~~k~~~g~r~~R~~g~G~Wk~~g-~~~~i~-~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~  156 (166)
T d1ut7a_          79 RDRKYPNGSRPNRVAGSGYWKATG-TDKIIS-TEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDD  156 (166)
T ss_dssp             CCC-------CCEEETTEEEEEEE-EEEEEE-ETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CC
T ss_pred             eccccCCCCccccccCCCEecccC-CCceEe-cCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCC
Confidence            999999999999999999999999 988776 468999999999999999999999999999999988642    34578


Q ss_pred             EEEEEEEEcC
Q 030306          156 WVLCKIYWES  165 (179)
Q Consensus       156 ~VLCrI~~k~  165 (179)
                      |||||||+|+
T Consensus       157 ~VLCrI~~Kk  166 (166)
T d1ut7a_         157 WVLCRIYKKQ  166 (166)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEecC
Confidence            9999999984