Citrus Sinensis ID: 030308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSSNSSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLLF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccEEEEHHHHcccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEcccccccccccccHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mssnssrrgapkhqnryawkpkagqkinerevggklrpypeitgvcprckdqidwkrrygkykplsepakcqrctKRAVRQAYHnlcpgcakeqnvcakccsrvdrviGRDLAEVEAEQKMLEAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLLF
Flexible Loop (DISEMBL)
mssnssrrgapkhqnryawkpkagqkinerevggklrpypeitgvcprckdqidWKRRygkykplsepakcqrcTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLLF
Low Complexity Region (SEG)
MSSNSSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLLF
Disordered region (IsUnstruct)
*********************************GKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLL*
Disordered Region (DISOPRED)
****************YAWKPKAGQK*********LRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCS*****************************************YTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLLF
Disordered Region (DISEMBL)
***************RYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLLF
Disordered Region (DISPRO)
************HQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSNSSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDxxxxxxxxxxxxxxxxxxxxxDRRILLRAVSSYTAILDLNICVSFCQVKKNFKCFFILFAIDLYQLLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q96MD7	179	Uncharacterized protein C	yes	no	0.581	0.581	0.4	4e-16
Q9CQ90	155	Uncharacterized protein C	yes	no	0.575	0.664	0.401	1e-14
Q68FU5	155	Uncharacterized protein C	yes	no	0.575	0.664	0.392	5e-14

>sp|Q96MD7|CI085_HUMAN Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query: 4   NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKY 62
           N +R    KHQN +++K  K  + +  +++  KL       GVC RCK+ ++W+ +Y KY
Sbjct: 7   NVARSRPQKHQNTFSFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKY 61

Query: 63  KPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDL 112
           KPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + D VI   L
Sbjct: 62  KPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVIPWSL 111

Homo sapiens (taxid: 9606)

>sp|Q9CQ90|CI085_MOUSE Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 9/112 (8%)

Query: 1   MSS---NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWK 56
           MSS   N +R    KHQN + +K  K  + +  +++  KL       GVC RCK+ ++W+
Sbjct: 1   MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWR 55

Query: 57  RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 108
            +Y KYKPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + + VI
Sbjct: 56  VKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIVI 107

Mus musculus (taxid: 10090)

>sp|Q68FU5|CI085_RAT Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=2 SV=1

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 9/112 (8%)

Query: 1   MSS---NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWK 56
           MSS   N +R    KHQN + +K  K  + +  +++  KL       GVC RCK+ ++W+
Sbjct: 1   MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWR 55

Query: 57  RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 108
            +Y KYKPLS+P KC +C ++ V+ +YH +C  CA +  VCAKC    + VI
Sbjct: 56  VKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKEEEIVI 107

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
90657631	222	hypothetical protein [Cleome spinosa]	0.770	0.621	0.789	3e-60
147770311	713	hypothetical protein VITISV_005164 [Viti	0.770	0.193	0.797	4e-60
225451784	221	PREDICTED: uncharacterized protein LOC10	0.770	0.624	0.797	2e-59
255580338	227	conserved hypothetical protein [Ricinus	0.787	0.621	0.780	6e-59
449447428	209	PREDICTED: uncharacterized protein LOC10	0.793	0.679	0.760	7e-59
449481558	150	PREDICTED: uncharacterized protein C9orf	0.793	0.946	0.763	5e-58
224077740	231	predicted protein [Populus trichocarpa]	0.770	0.597	0.760	7e-57
297832854	227	hypothetical protein ARALYDRAFT_477457 [	0.770	0.607	0.731	3e-55
388492654	233	unknown [Lotus japonicus]	0.720	0.553	0.767	6e-54
15232864	227	uncharacterized protein [Arabidopsis tha	0.770	0.607	0.710	1e-53

>gi|90657631|gb|ABD96929.1| hypothetical protein [Cleome spinosa]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 125/138 (90%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
           SSRRGAPKHQN++AWKP AG KINE EVGG+ RP  +ITGVCPRC++QIDWKRRYGKYK 
Sbjct: 2   SSRRGAPKHQNKFAWKPNAGVKINETEVGGRFRPLSDITGVCPRCREQIDWKRRYGKYKT 61

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           L+EPAKCQ+CTKR VRQAYH LC GCAKEQNVCAKCC RVD+++GRD++EVEAEQKMLE 
Sbjct: 62  LTEPAKCQKCTKRNVRQAYHKLCNGCAKEQNVCAKCCCRVDQIVGRDVSEVEAEQKMLEE 121

Query: 125 ALKNARERDRRILLRAVS 142
           A+KNARERDRR LLRA++
Sbjct: 122 AIKNARERDRRSLLRAMN 139

Source: Cleome spinosa

Species: Cleome spinosa

Genus: Cleome

Family: Cleomaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770311|emb|CAN66988.1| hypothetical protein VITISV_005164 [Vitis vinifera]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 121/138 (87%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
           SSRRG PKHQN YAWKP +G K NE EVGGKLRPY EITGVC RCK+QI+WKRRYGKYKP
Sbjct: 58  SSRRGPPKHQNAYAWKPNSGHKKNETEVGGKLRPYSEITGVCARCKEQIEWKRRYGKYKP 117

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           L EPAKCQRC+KRAVRQA+H LC  CAKEQN CAKCCSRVD +IGRD +EVEAEQK+LE 
Sbjct: 118 LIEPAKCQRCSKRAVRQAHHKLCSACAKEQNACAKCCSRVDNIIGRDCSEVEAEQKLLEE 177

Query: 125 ALKNARERDRRILLRAVS 142
           A+KNARERDRR LLRA++
Sbjct: 178 AIKNARERDRRTLLRAMN 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451784|ref|XP_002281105.1| PREDICTED: uncharacterized protein LOC100241163 [Vitis vinifera] gi|298204468|emb|CBI16948.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 121/138 (87%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
           SSRRG PKHQN YAWKP +G K NE EVGGKLRPY EITGVC RCK+QI+WKRRYGKYKP
Sbjct: 2   SSRRGPPKHQNAYAWKPNSGHKKNETEVGGKLRPYSEITGVCARCKEQIEWKRRYGKYKP 61

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           L EPAKCQRC+KRAVRQA+H LC  CAKEQN CAKCCSRVD +IGRD +EVEAEQK+LE 
Sbjct: 62  LIEPAKCQRCSKRAVRQAHHKLCSACAKEQNACAKCCSRVDNIIGRDCSEVEAEQKLLEE 121

Query: 125 ALKNARERDRRILLRAVS 142
           A+KNARERDRR LLRA++
Sbjct: 122 AIKNARERDRRTLLRAMN 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580338|ref|XP_002530997.1| conserved hypothetical protein [Ricinus communis] gi|223529424|gb|EEF31385.1| conserved hypothetical protein [Ricinus communis]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 110/141 (78%), Positives = 121/141 (85%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
           S R+G PKHQNR+AW+P AG KINE EVGGKLRP  EITGVCPRCK+QIDWKRRYGKYKP
Sbjct: 2   SKRQGPPKHQNRFAWQPNAGHKINETEVGGKLRPLSEITGVCPRCKEQIDWKRRYGKYKP 61

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           LSEPAKCQ+C+KR VRQAYHNLC  CAKEQ VCAKC  RV  +IGRD AE+EAEQKMLE 
Sbjct: 62  LSEPAKCQQCSKRTVRQAYHNLCTACAKEQKVCAKCRCRVANIIGRDSAEIEAEQKMLEE 121

Query: 125 ALKNARERDRRILLRAVSSYT 145
           A+KNARERDRR LLRA++  T
Sbjct: 122 AIKNARERDRRSLLRAMNKGT 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447428|ref|XP_004141470.1| PREDICTED: uncharacterized protein LOC101206376 [Cucumis sativus]

 Score =  231 bits (590), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 122/142 (85%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
           S+++G PKHQN+YAWKP AG+KINE EVGG+ RP  +ITGVC RCKDQIDWKRRYGKYKP
Sbjct: 2   SNKQGPPKHQNKYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYKP 61

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           LSEP KCQ C+KR VRQAYHNLCPGCAKEQ VCAKC  RVD+ +GRDL+EVEAEQKML+ 
Sbjct: 62  LSEPTKCQLCSKRNVRQAYHNLCPGCAKEQGVCAKCRCRVDQTVGRDLSEVEAEQKMLQE 121

Query: 125 ALKNARERDRRILLRAVSSYTA 146
           A+KNARERDRR LLRA+    A
Sbjct: 122 AIKNARERDRRTLLRAMEKGKA 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481558|ref|XP_004156218.1| PREDICTED: uncharacterized protein C9orf85-like [Cucumis sativus]

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 126/144 (87%), Gaps = 2/144 (1%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
           S+++G PKHQN+YAWKP AG+KINE EVGG+ RP  +ITGVC RCKDQIDWKRRYGKYKP
Sbjct: 2   SNKQGPPKHQNKYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYKP 61

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           LSEP KCQ C+KR VRQAYHNLCPGCAKEQ VCAKC  RVD+ +GRDL+EVEAEQKML+ 
Sbjct: 62  LSEPTKCQLCSKRNVRQAYHNLCPGCAKEQGVCAKCRCRVDQTVGRDLSEVEAEQKMLQE 121

Query: 125 ALKNARERDRRILLRAVS--SYTA 146
           A+KNARERDRR LLRAV+  S+T+
Sbjct: 122 AIKNARERDRRTLLRAVNLRSWTS 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077740|ref|XP_002305388.1| predicted protein [Populus trichocarpa] gi|222848352|gb|EEE85899.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 121/138 (87%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
           S+++G PKHQN YAWKP AG+KINE EVGG+L+P  EITGVC RCK+QIDWKRRYGKYKP
Sbjct: 2   SNKQGPPKHQNNYAWKPNAGRKINETEVGGRLKPLSEITGVCQRCKEQIDWKRRYGKYKP 61

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           L+EPAKCQ+C+KR VRQAYHNLC  CAKEQ VCAKC   VDR+IGRDLA+VEAEQK LE 
Sbjct: 62  LTEPAKCQKCSKRTVRQAYHNLCTACAKEQKVCAKCRCHVDRIIGRDLADVEAEQKTLEE 121

Query: 125 ALKNARERDRRILLRAVS 142
           A+KNARERDRR L+RA++
Sbjct: 122 AIKNARERDRRALIRAMN 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832854|ref|XP_002884309.1| hypothetical protein ARALYDRAFT_477457 [Arabidopsis lyrata subsp. lyrata] gi|297330149|gb|EFH60568.1| hypothetical protein ARALYDRAFT_477457 [Arabidopsis lyrata subsp. lyrata]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 118/138 (85%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
            SR+G PKHQN++AW PKAG KINE EVGG+ RP  EITGVC RC++QI WKR+YGKYK 
Sbjct: 2   GSRQGPPKHQNKFAWVPKAGVKINETEVGGRFRPLSEITGVCYRCREQIAWKRKYGKYKT 61

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           L+E  KCQ+CTKR VRQAYH LCPGCAKEQ VCAKCCSRVD+++GRD+ EVEAEQKML+ 
Sbjct: 62  LTEATKCQKCTKRNVRQAYHKLCPGCAKEQKVCAKCCSRVDQILGRDIYEVEAEQKMLDE 121

Query: 125 ALKNARERDRRILLRAVS 142
            +KNARERDRR LLRA++
Sbjct: 122 TIKNARERDRRTLLRAMN 139

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492654|gb|AFK34393.1| unknown [Lotus japonicus]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 99/129 (76%), Positives = 110/129 (85%)

Query: 1   MSSNSSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYG 60
           MS+ + + G PKHQN+ AWKP AG+KINE EVGG+ RP  EITGVCPRC+DQIDWKRRYG
Sbjct: 1   MSTAAKKTGPPKHQNKVAWKPNAGRKINETEVGGRFRPLSEITGVCPRCRDQIDWKRRYG 60

Query: 61  KYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQK 120
           KYKPL+EPAKCQRCTKRAVRQAYHNLC GCAKE  VCAKCC  V R++GRD  EVEAEQK
Sbjct: 61  KYKPLAEPAKCQRCTKRAVRQAYHNLCSGCAKEHRVCAKCCCSVARIVGRDSEEVEAEQK 120

Query: 121 MLEAALKNA 129
           MLE A+KNA
Sbjct: 121 MLEEAIKNA 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232864|ref|NP_186871.1| uncharacterized protein [Arabidopsis thaliana] gi|6041796|gb|AAF02116.1|AC009755_9 unknown protein [Arabidopsis thaliana] gi|332640259|gb|AEE73780.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/138 (71%), Positives = 116/138 (84%)

Query: 5   SSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKP 64
            SR+G PKHQN++AW PKAG KINE EVGG+ RP  EITGVC RC++QI WKR+YGKYK 
Sbjct: 2   GSRQGPPKHQNKFAWVPKAGVKINETEVGGRFRPLSEITGVCYRCREQIAWKRKYGKYKT 61

Query: 65  LSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEA 124
           L+E  KCQ+CTKR VRQAYH LCPGCAKEQ VCAKCC  VD+++GRD+ EVEAEQK+L+ 
Sbjct: 62  LTEATKCQKCTKRNVRQAYHKLCPGCAKEQKVCAKCCQSVDQILGRDIYEVEAEQKLLDE 121

Query: 125 ALKNARERDRRILLRAVS 142
            +KNARERDRR LLRA++
Sbjct: 122 TIKNARERDRRTLLRAMN 139

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2076497	227	AT3G02220 [Arabidopsis thalian	0.765	0.603	0.715	3.4e-54
ZFIN|ZDB-GENE-040822-14	163	zgc:101016 "zgc:101016" [Danio	0.698	0.766	0.353	3.1e-19
MGI|MGI:1913456	155	1110059E24Rik "RIKEN cDNA 1110	0.558	0.645	0.396	6.5e-19

TAIR|locus:2076497 AT3G02220 [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 98/137 (71%), Positives = 116/137 (84%)

Query:     6 SRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPL 65
             SR+G PKHQN++AW PKAG KINE EVGG+ RP  EITGVC RC++QI WKR+YGKYK L
Sbjct:     3 SRQGPPKHQNKFAWVPKAGVKINETEVGGRFRPLSEITGVCYRCREQIAWKRKYGKYKTL 62

Query:    66 SEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEAA 125
             +E  KCQ+CTKR VRQAYH LCPGCAKEQ VCAKCC  VD+++GRD+ EVEAEQK+L+  
Sbjct:    63 TEATKCQKCTKRNVRQAYHKLCPGCAKEQKVCAKCCQSVDQILGRDIYEVEAEQKLLDET 122

Query:   126 LKNARERDRRILLRAVS 142
             +KNARERDRR LLRA++
Sbjct:   123 IKNARERDRRTLLRAMN 139

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

ZFIN|ZDB-GENE-040822-14 zgc:101016 "zgc:101016" [Danio rerio (taxid:7955)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/133 (35%), Positives = 75/133 (56%)

Query:     4 NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKY 62
             N SR    KHQN  A+K  K G     ++   K+       G+C  CKD ++WK +Y KY
Sbjct:     7 NVSRSRGQKHQNVTAYKNDKYGATAQVKKANSKVHD-----GLCQHCKDVLEWKVKYNKY 61

Query:    63 KPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKML 122
             KPL++P KC +C ++ V+ AYH +C  CA +  +CAKC +  + VI  D  + + E+++ 
Sbjct:    62 KPLTQPRKCVKCLQKTVKDAYHIMCKPCALKLELCAKCGNEEEIVIPLD--QKDKEEEVE 119

Query:   123 EAALKNARERDRR 135
             + +  N  +R +R
Sbjct:   120 DTSKPNKGKRSKR 132

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913456 1110059E24Rik "RIKEN cDNA 1110059E24 gene" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 42/106 (39%), Positives = 64/106 (60%)

Query:     4 NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKY 62
             N +R    KHQN + +K  K  + +  +++  KL       GVC RCK+ ++W+ +Y KY
Sbjct:     7 NVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWRVKYSKY 61

Query:    63 KPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 108
             KPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + + VI
Sbjct:    62 KPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIVI 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       179   0.00089  109 3  11 22  0.36    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  172 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.26u 0.07s 17.33t   Elapsed:  00:00:01
  Total cpu time:  17.26u 0.07s 17.33t   Elapsed:  00:00:01
  Start:  Fri May 10 19:15:38 2013   End:  Fri May 10 19:15:39 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam10217	92	pfam10217, DUF2039, Uncharacterized conserved prot	1e-32

>gnl|CDD|192485 pfam10217, DUF2039, Uncharacterized conserved protein (DUF2039)

 Score =  111 bits (280), Expect = 1e-32
 Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 4/92 (4%)

Query: 10  APKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPA 69
           A KHQNR A+K     K  E E      P   + G+C RCKDQI+WK +YGKYKPL++P 
Sbjct: 1   AQKHQNRVAFKNNRHDK-TEEEKRINSLP---LDGLCQRCKDQIEWKVKYGKYKPLTQPK 56

Query: 70  KCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCC 101
           KC +C ++ VR AYH++C  CA +  VCAKC 
Sbjct: 57  KCNKCQQKTVRHAYHHICDDCALKLKVCAKCQ 88

This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG3241	227	consensus Uncharacterized conserved protein [Funct	100.0
PF10217	92	DUF2039: Uncharacterized conserved protein (DUF203	100.0
PF10235	90	Cript: Microtubule-associated protein CRIPT; Inter	94.21
KOG3476	100	consensus Microtubule-associated protein CRIPT [Cy	83.95
PRK04023	1121	DNA polymerase II large subunit; Validated	81.83

>KOG3241 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.5e-57  Score=378.40  Aligned_cols=141  Identities=61%  Similarity=1.069  Sum_probs=134.0

Q ss_pred             CCC---CCCCCCCCCCccccccCCCCCCccchhhccCccCCCCCccCcchhhHHHHHHHHHhCCCCCCCCcccccccccc
Q 030308            1 MSS---NSSRRGAPKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKR   77 (179)
Q Consensus         1 MSS---N~~R~r~QKHQN~~aFKnn~~~K~~e~~~~~k~~~~~~~~gvCqRC~eiIeWK~kY~KYKpLt~p~KC~kC~qk   77 (179)
                      |||   |++|+|||||||+|+|+|++++|   +.++++| |++.++||||||+++||||++|+||||||++++|.+|.++
T Consensus         1 MsSq~GNVaRsRpqKHqN~f~fkndk~dk---t~q~~r~-na~~itgVCqRCkEqieWk~KY~KYKpLt~akkC~kC~~r   76 (227)
T KOG3241|consen    1 MSSQQGNVARSRPQKHQNKFAFKNDKIDK---TEQGGRF-NASEITGVCQRCKEQIEWKRKYGKYKPLTEAKKCQKCTKR   76 (227)
T ss_pred             CCcccCccccccchhhccceeeccccccc---chhhcee-hhhHhhhHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence            999   99999999999999999998765   4455665 6899999999999999999999999999999999999999


Q ss_pred             hhhHHHHhcChhHHhhccccccccCccceecCCCchhHHHHHHHHHHHHhhchhhchhhHHHhhhhcc
Q 030308           78 AVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKMLEAALKNARERDRRILLRAVSSYT  145 (179)
Q Consensus        78 tV~~AYh~iC~~CA~~~~vCaKC~k~~~~i~~~~~~e~e~eq~ele~~lk~l~ER~RRt~lR~~~k~~  145 (179)
                      +|++|||.+|++||.+..+||||+++.++|..+++.+++.|++.|++++++++||+||||||+|+|+.
T Consensus        77 ~Vk~aYH~~Cr~CA~e~~vCAKC~ks~~~i~i~d~~p~~~E~~~l~~t~~n~ser~RRt~lR~m~k~~  144 (227)
T KOG3241|consen   77 NVKQAYHKLCRGCAKEQKVCAKCCKSVDQILIRDIYPVEAEQKLLDETIKNASERDRRTLLRAMNKDN  144 (227)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHhccHHHhhhcCCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999965

>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues

Probab=100.00  E-value=6.2e-46  Score=279.74  Aligned_cols=92  Identities=51%  Similarity=1.003  Sum_probs=84.9

Q ss_pred             CCCCccccccCCCCCCccchhhccCccCCCCCccCcchhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHHHhcChh
Q 030308           10 APKHQNRYAWKPKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPG   89 (179)
Q Consensus        10 ~QKHQN~~aFKnn~~~K~~e~~~~~k~~~~~~~~gvCqRC~eiIeWK~kY~KYKpLt~p~KC~kC~qktV~~AYh~iC~~   89 (179)
                      +|||||++||+||++++. ++.   +.+++++++|||+||+|+||||++|||||||++|++|++|+++||++|||+||++
T Consensus         1 ~qkhqN~~aFk~n~~~~~-~~~---~~i~~~~~~gvC~rC~~~IeWK~kY~KYKpLt~p~kC~~C~qktVk~AYh~iC~~   76 (92)
T PF10217_consen    1 AQKHQNRFAFKNNKHDKS-EKT---KKINSLPIDGVCQRCKDIIEWKVKYGKYKPLTQPKKCNKCQQKTVKHAYHVICDP   76 (92)
T ss_pred             CccccccccccCCCCCcc-HHH---HHHHhCccccccHhHHHHHHHHHHhcCcccCCCCccccccccchHHHHHHHHHHH
Confidence            599999999999999983 322   3456689999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccccccCccc
Q 030308           90 CAKEQNVCAKCCSRVD  105 (179)
Q Consensus        90 CA~~~~vCaKC~k~~~  105 (179)
                      ||.++++|||||+++|
T Consensus        77 Ca~~~~vCaKC~k~~e   92 (92)
T PF10217_consen   77 CAKELKVCAKCGKPPE   92 (92)
T ss_pred             HHHhhccCcccCCCCC
Confidence            9999999999999875

The region is conserved from plants to humans but its function is unknown.

>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production

Probab=94.21  E-value=0.021  Score=43.57  Aligned_cols=42  Identities=29%  Similarity=0.720  Sum_probs=32.4

Q ss_pred             CCCCC-cccccccccchhhHHHHhcChhHHhhccccccccCccc
Q 030308           63 KPLSE-PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVD  105 (179)
Q Consensus        63 KpLt~-p~KC~kC~qktV~~AYh~iC~~CA~~~~vCaKC~k~~~  105 (179)
                      -|..+ ..+|-.|.+ .|.++=|..|+.||-..++||.||++.-
T Consensus        38 nPy~~~~~~C~~CK~-~v~q~g~~YCq~CAYkkGiCamCGKki~   80 (90)
T PF10235_consen   38 NPYAPYSSKCKICKT-KVHQPGAKYCQTCAYKKGICAMCGKKIL   80 (90)
T ss_pred             CcccccCcccccccc-ccccCCCccChhhhcccCcccccCCeec
Confidence            34443 678999954 5666566689999999999999999753

This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].

>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]

Probab=83.95  E-value=0.26  Score=38.17  Aligned_cols=46  Identities=33%  Similarity=0.723  Sum_probs=33.7

Q ss_pred             HHHhCCCCCCCCcccccccccchhhHHHHhcChhHHhhccccccccCcc
Q 030308           56 KRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRV  104 (179)
Q Consensus        56 K~kY~KYKpLt~p~KC~kC~qktV~~AYh~iC~~CA~~~~vCaKC~k~~  104 (179)
                      +.+|.-|-  +.-.+|-.|.+. |.+.=.+.|..||-..+|||.||+..
T Consensus        44 k~r~~p~g--t~~~kC~iCk~~-vHQ~GshYC~tCAY~KgiCAMCGKki   89 (100)
T KOG3476|consen   44 KKRATPYG--TALAKCRICKQL-VHQPGSHYCQTCAYKKGICAMCGKKI   89 (100)
T ss_pred             hhhcCccc--cccchhHHHHHH-hcCCcchhHhHhhhhhhHHHHhhhHh
Confidence            44444444  456788888654 55555459999999999999999864

>PRK04023 DNA polymerase II large subunit; Validated

Probab=81.83  E-value=0.72  Score=47.96  Aligned_cols=59  Identities=25%  Similarity=0.540  Sum_probs=29.2

Q ss_pred             ccccccccchhhHHHHhcChhHHhhc--cccccccCccceecCCCchhHHHHHHHHHHHHhhchhhch
Q 030308           69 AKCQRCTKRAVRQAYHNLCPGCAKEQ--NVCAKCCSRVDRVIGRDLAEVEAEQKMLEAALKNARERDR  134 (179)
Q Consensus        69 ~KC~kC~qktV~~AYh~iC~~CA~~~--~vCaKC~k~~~~i~~~~~~e~e~eq~ele~~lk~l~ER~R  134 (179)
                      .+|..|+..| ..+|  -|+.|....  ..|++||.......    ...-.....+.+++++|.+|+.
T Consensus       639 frCP~CG~~T-e~i~--fCP~CG~~~~~y~CPKCG~El~~~s----~~~i~l~~~~~~A~~~lg~~~~  699 (1121)
T PRK04023        639 RRCPFCGTHT-EPVY--RCPRCGIEVEEDECEKCGREPTPYS----KRKIDLKELYDRALENLGERKN  699 (1121)
T ss_pred             ccCCCCCCCC-Ccce--eCccccCcCCCCcCCCCCCCCCccc----eEEecHHHHHHHHHHHhCCcCC
Confidence            4455555442 2222  355554443  24666654332211    1111234467888888888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	89.82

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=89.82  E-value=0.008  Score=43.92  Aligned_cols=49  Identities=31%  Similarity=0.730  Sum_probs=40.1

Q ss_pred             ccCcchhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHHHhcChhHHhhccccccccC
Q 030308           42 ITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCS  102 (179)
Q Consensus        42 ~~gvCqRC~eiIeWK~kY~KYKpLt~p~KC~kC~qktV~~AYh~iC~~CA~~~~vCaKC~k  102 (179)
                      |+..|+.|...|+|.-+         ...|..|++-=...|   .|+.|..++.+|..||.
T Consensus         1 M~~~CP~C~~~l~~~~~---------~~~C~~C~~~~~~~a---fCPeCgq~Le~lkACGA   49 (81)
T 2jrp_A            1 MEITCPVCHHALERNGD---------TAHCETCAKDFSLQA---LCPDCRQPLQVLKACGA   49 (81)
T ss_dssp             CCCCCSSSCSCCEECSS---------EEECTTTCCEEEEEE---ECSSSCSCCCEEEETTE
T ss_pred             CCCCCCCCCCccccCCC---------ceECccccccCCCcc---cCcchhhHHHHHHhcCC
Confidence            34679999999999622         456999988766666   79999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00