Citrus Sinensis ID: 030311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLLSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEcccccHHHHHHHHccHHHHHHHHHHHHcccccccccEEEEEEEEEEEEEcccEEEEEEEEEEEEEcccccEEEEcccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEcccccEEEccccHHHHccccccccccccccccccccccccEEEEEccccccccEEEEEcccccHHHHHHHHccHHHHHHHHHHHHcccEEccccEEEEEEEEEEEccccccEEEEEEEEEEEEcccccEEEEcccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msqlfytlpkrltvspsppllhfnyrssrtrlvcskmptesspsplthsitipsqlsqpvhvvaapglsesdfrCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFcketgqkvrvptgrvilelpagmldddkgdfvGTAVREVSFILLLDFLLSL
Flexible Loop (DISEMBL)
msqlfytlpkrltvspsppllhfnyrssRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCketgqkvrvptgrVILELpagmldddkGDFVGTAVREVSFILLLDFLLSL
Low Complexity Region (SEG)
MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVsfillldfllsl
Disordered region (IsUnstruct)
*****YT************LLHFNY**********************************VHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL**
Disordered Region (DISOPRED)
***LFYTLPKRLTVSPSPPLL***************************SITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLLSL
Disordered Region (DISEMBL)
MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLV**************HSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLLSL
Disordered Region (DISPRO)
*SQLFYTLPKRLTVSPSPPLLH*********************SPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLLSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLLSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9SZ63	309	Nudix hydrolase 14, chlor	yes	no	0.888	0.514	0.560	2e-47

>sp|Q9SZ63|NUD14_ARATH Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2

 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/198 (56%), Positives = 131/198 (66%), Gaps = 39/198 (19%)

Query: 5   FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
           F  LP RL   PS   P  LH ++  ++  L C KM + SS   LT SIT+PSQ ++PV 
Sbjct: 4   FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KMSSSSSS--LTQSITLPSQPNEPVL 58

Query: 62  VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
           V A  G+S SDFR A++S+LF+ WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGFL
Sbjct: 59  VSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGFL 118

Query: 122 KFKADIFCKETGQK-------------------------------VRVPTGRVILELPAG 150
           KFKADIF KETGQK                               VRVPTG+++LELPAG
Sbjct: 119 KFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPAG 178

Query: 151 MLDDDKGDFVGTAVREVS 168
           MLDDDKGDFVGTAVREV 
Sbjct: 179 MLDDDKGDFVGTAVREVE 196

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use ADP-glucose, ADP-mannose and ADP-ribose as substrates. Regulates the intracellular ADP-glucose levels linked to starch biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
297813707	303	hypothetical protein ARALYDRAFT_490017 [	0.893	0.528	0.574	3e-49
224071638	270	predicted protein [Populus trichocarpa]	0.731	0.485	0.625	4e-49
356513721	304	PREDICTED: nudix hydrolase 14, chloropla	0.826	0.486	0.574	2e-48
255639009	223	unknown [Glycine max]	0.821	0.659	0.572	3e-48
255537175	305	ADP-ribose pyrophosphatase, putative [Ri	0.888	0.521	0.545	2e-47
356514188	270	PREDICTED: nudix hydrolase 14, chloropla	0.726	0.481	0.625	5e-47
110622992	307	ADP-sugar diphosphatase [Solanum tuberos	0.877	0.511	0.559	3e-46
18413722	309	nudix hydrolase 14 [Arabidopsis thaliana	0.888	0.514	0.560	9e-46
225426698	306	PREDICTED: nudix hydrolase 14, chloropla	0.849	0.496	0.531	6e-43
297742638	269	unnamed protein product [Vitis vinifera]	0.687	0.457	0.571	2e-41

>gi|297813707|ref|XP_002874737.1| hypothetical protein ARALYDRAFT_490017 [Arabidopsis lyrata subsp. lyrata] gi|297320574|gb|EFH50996.1| hypothetical protein ARALYDRAFT_490017 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 128/195 (65%), Gaps = 35/195 (17%)

Query: 5   FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVA 64
           F  LP RL    S    H  +  +   L C KM   SS SPLTHSIT+PSQ ++PV V A
Sbjct: 6   FTLLPSRLLACYSRAFPHRLHHHAELILRC-KM---SSSSPLTHSITLPSQPNEPVLVSA 61

Query: 65  APGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFK 124
             G+S SDFR A++S+LF+ WL+NL+SETGILA+G M LKQVLIQGVDMFGKRIGFLKFK
Sbjct: 62  TSGISSSDFRDAIDSSLFRNWLRNLESETGILADGSMTLKQVLIQGVDMFGKRIGFLKFK 121

Query: 125 ADIFCKETGQK-------------------------------VRVPTGRVILELPAGMLD 153
           ADIF KETGQK                               VRVPTG+++LELPAGMLD
Sbjct: 122 ADIFDKETGQKVPGIVFARGPAVAVLILLESNGETYAVLTEQVRVPTGKIVLELPAGMLD 181

Query: 154 DDKGDFVGTAVREVS 168
           DDKGDFVGTAVREV 
Sbjct: 182 DDKGDFVGTAVREVE 196

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071638|ref|XP_002303547.1| predicted protein [Populus trichocarpa] gi|222840979|gb|EEE78526.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 118/163 (72%), Gaps = 32/163 (19%)

Query: 37  MPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGIL 96
           M +ESS  PLTHS+T+P+QL QP+ ++AAPG+S+S FR A+ES+LFKQWLKNL+SE GIL
Sbjct: 1   MSSESS-QPLTHSLTLPTQLGQPIKIIAAPGVSDSQFRTAIESSLFKQWLKNLESENGIL 59

Query: 97  ANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQK--------------------- 135
           A G  LLKQVL+QGVDMFG+RIGFLKFKADIF KETGQK                     
Sbjct: 60  ATGSFLLKQVLVQGVDMFGQRIGFLKFKADIFEKETGQKIPGIVFARGPAVTVLILLSSE 119

Query: 136 ----------VRVPTGRVILELPAGMLDDDKGDFVGTAVREVS 168
                     VRVPTGR++LELPAGMLD DKGDFVGTAVREV 
Sbjct: 120 GETYAVLTEQVRVPTGRLVLELPAGMLDADKGDFVGTAVREVE 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513721|ref|XP_003525559.1| PREDICTED: nudix hydrolase 14, chloroplastic-like [Glycine max]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 123/181 (67%), Gaps = 33/181 (18%)

Query: 19  PLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVE 78
           PL   N+ S + +    KM TES+   LTH+IT+P++ ++PVHVVAAPG+S SDF  AVE
Sbjct: 17  PLHSSNWVSKKNKGFSCKMSTESTS--LTHTITLPNKHNEPVHVVAAPGVSPSDFWSAVE 74

Query: 79  STLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKV-- 136
            +LFKQWL NLQ+E G+LA+G + L+QVLIQGVDMFGKRIGFLKFKADIF KETG+ V  
Sbjct: 75  CSLFKQWLHNLQTENGVLADGTLALRQVLIQGVDMFGKRIGFLKFKADIFDKETGKMVPG 134

Query: 137 -----------------------------RVPTGRVILELPAGMLDDDKGDFVGTAVREV 167
                                        RVP GR+ILELPAGMLDDDKGDFVGTAVREV
Sbjct: 135 IVFARGPAVAVLMLLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDFVGTAVREV 194

Query: 168 S 168
            
Sbjct: 195 E 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639009|gb|ACU19805.1| unknown [Glycine max]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/180 (57%), Positives = 123/180 (68%), Gaps = 33/180 (18%)

Query: 19  PLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVE 78
           PL   N+ S + +    KM TES+   LTH+IT+P++ ++PVHVVAAPG+S SDF  AVE
Sbjct: 17  PLHSSNWVSKKNKGFSCKMSTESTS--LTHTITLPNKHNEPVHVVAAPGVSPSDFWSAVE 74

Query: 79  STLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKV-- 136
            +LFKQWL NLQ+E G+LA+G + L+QVLIQGV+MFGKRIGFLKFKADIF KETG+ V  
Sbjct: 75  CSLFKQWLHNLQTENGVLADGTLALRQVLIQGVNMFGKRIGFLKFKADIFDKETGKMVPG 134

Query: 137 -----------------------------RVPTGRVILELPAGMLDDDKGDFVGTAVREV 167
                                        RVP GR+ILELPAGMLDDDKGDFVGTAVREV
Sbjct: 135 IVFARGPAVAVLMLLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDFVGTAVREV 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537175|ref|XP_002509654.1| ADP-ribose pyrophosphatase, putative [Ricinus communis] gi|223549553|gb|EEF51041.1| ADP-ribose pyrophosphatase, putative [Ricinus communis]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/196 (54%), Positives = 130/196 (66%), Gaps = 37/196 (18%)

Query: 7   TLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAP 66
           T PKR+ ++P   +LH   ++ R+R   S   +  SP PLT S+T+P+Q +QPV ++AAP
Sbjct: 5   TAPKRIVLAPFQYMLH---QTRRSRTPFSVKMSADSPQPLTQSLTLPTQPNQPVQIIAAP 61

Query: 67  GLSESDFR---CAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKF 123
           G+S SD R    A++S+LFKQWLKNLQSETGILA     LK+VL+QGVDMFGKRIGFLKF
Sbjct: 62  GVSGSDLRPCRSAIDSSLFKQWLKNLQSETGILATPSFSLKRVLVQGVDMFGKRIGFLKF 121

Query: 124 KADIFCKETGQK-------------------------------VRVPTGRVILELPAGML 152
           KADI  +ETGQK                               VRVPTGR++LELPAGML
Sbjct: 122 KADIIDQETGQKVPGIVFARGPAVTVLILLDAEGETYAVLTEQVRVPTGRLVLELPAGML 181

Query: 153 DDDKGDFVGTAVREVS 168
           DDDKGDFVGTAVREV 
Sbjct: 182 DDDKGDFVGTAVREVE 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514188|ref|XP_003525788.1| PREDICTED: nudix hydrolase 14, chloroplastic-like [Glycine max]

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 116/163 (71%), Gaps = 33/163 (20%)

Query: 37  MPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGIL 96
           M TES PS LTH+IT+P++ ++PVH+VAAPG+S SDF CAVES+LFKQWL NLQ+E GIL
Sbjct: 1   MSTES-PS-LTHTITLPNKHNEPVHIVAAPGVSNSDFWCAVESSLFKQWLHNLQTENGIL 58

Query: 97  ANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETG----------------------- 133
           A+G M L+QV IQGVDMFGKRIGFLKFKADIF KETG                       
Sbjct: 59  ADGTMTLRQVRIQGVDMFGKRIGFLKFKADIFDKETGKMIPGIVFARGPAVAVLILLESE 118

Query: 134 --------QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVS 168
                   ++ RVP GR ILELPAGMLDDDKGDFVGTAVREV 
Sbjct: 119 GETYAVLTEQARVPVGRNILELPAGMLDDDKGDFVGTAVREVE 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110622992|emb|CAJ55406.1| ADP-sugar diphosphatase [Solanum tuberosum]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 131/202 (64%), Gaps = 45/202 (22%)

Query: 11  RLTVSPS-----PPLLHFNYRSSRTRLV---CS-----KMPTESSPSPLTHSITIPSQLS 57
           RLTVS        PL  F + SS + L    CS     KM T + PS +TH I +P+QL 
Sbjct: 2   RLTVSRCGLPFVKPLFEFPFSSSSSTLWPRNCSGSFSVKMST-TPPSRITHIINLPTQLD 60

Query: 58  QPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKR 117
           QPV VVAAPG+S++ FR A+ES+LFKQWLKN+Q+ETG+LANG M LKQVLIQGVDMFG+R
Sbjct: 61  QPVSVVAAPGVSDTHFRNAIESSLFKQWLKNIQTETGLLANGAMSLKQVLIQGVDMFGER 120

Query: 118 IGFLKFKADIFCKETGQK-------------------------------VRVPTGRVILE 146
           +GFLKFKADI  KETGQK                               VRVP GR+ILE
Sbjct: 121 LGFLKFKADIIDKETGQKVPGIVFSRGPAVAVLILLDSEGETYAVLTEQVRVPVGRLILE 180

Query: 147 LPAGMLDDDKGDFVGTAVREVS 168
           LPAGMLDDD+GDF GTAVREV 
Sbjct: 181 LPAGMLDDDQGDFAGTAVREVE 202

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413722|ref|NP_567384.1| nudix hydrolase 14 [Arabidopsis thaliana] gi|68565950|sp|Q9SZ63.2|NUD14_ARATH RecName: Full=Nudix hydrolase 14, chloroplastic; Short=AtNUDT14; AltName: Full=ADP-sugar diphosphatase; Short=AtASPP; Flags: Precursor gi|15450341|gb|AAK96464.1| AT4g11980/F16J13_50 [Arabidopsis thaliana] gi|24797050|gb|AAN64537.1| At4g11980/F16J13_50 [Arabidopsis thaliana] gi|67966275|emb|CAG38620.1| ADP-sugar diphosphatase [Arabidopsis thaliana] gi|332657679|gb|AEE83079.1| nudix hydrolase 14 [Arabidopsis thaliana]

 Score =  188 bits (477), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 111/198 (56%), Positives = 131/198 (66%), Gaps = 39/198 (19%)

Query: 5   FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
           F  LP RL   PS   P  LH ++  ++  L C KM + SS   LT SIT+PSQ ++PV 
Sbjct: 4   FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KMSSSSSS--LTQSITLPSQPNEPVL 58

Query: 62  VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
           V A  G+S SDFR A++S+LF+ WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGFL
Sbjct: 59  VSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGFL 118

Query: 122 KFKADIFCKETGQK-------------------------------VRVPTGRVILELPAG 150
           KFKADIF KETGQK                               VRVPTG+++LELPAG
Sbjct: 119 KFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPAG 178

Query: 151 MLDDDKGDFVGTAVREVS 168
           MLDDDKGDFVGTAVREV 
Sbjct: 179 MLDDDKGDFVGTAVREVE 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426698|ref|XP_002281806.1| PREDICTED: nudix hydrolase 14, chloroplastic [Vitis vinifera] gi|147766435|emb|CAN76052.1| hypothetical protein VITISV_016365 [Vitis vinifera]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 127/190 (66%), Gaps = 38/190 (20%)

Query: 10  KRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLS 69
           ++  +S SP LL  N+R    R  C KM ++SS   LT+SIT+P+QL+ PV V AAPG+S
Sbjct: 16  RKYALSSSPILLQ-NHR----RTFCPKMSSDSSS--LTYSITLPNQLADPVTVDAAPGIS 68

Query: 70  ESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFC 129
            S+FR A++S+LFKQWLKN+QSE G+L+NG M L++VLIQGVDMFG RIGFLKFKADI  
Sbjct: 69  ASEFRKAIDSSLFKQWLKNMQSEAGVLSNGAMSLERVLIQGVDMFGNRIGFLKFKADILD 128

Query: 130 KETGQK-------------------------------VRVPTGRVILELPAGMLDDDKGD 158
           KETG+K                               VRVP G+ ILELPAGML++D+GD
Sbjct: 129 KETGKKVPGIVFARGPAVAVLILLDSEGEIYTVLTEQVRVPVGKRILELPAGMLENDRGD 188

Query: 159 FVGTAVREVS 168
           F+GTA REV 
Sbjct: 189 FIGTAAREVE 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742638|emb|CBI34787.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 108/154 (70%), Gaps = 31/154 (20%)

Query: 46  LTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQ 105
           LT+SIT+P+QL+ PV V AAPG+S S+FR A++S+LFKQWLKN+QSE G+L+NG M L++
Sbjct: 8   LTYSITLPNQLADPVTVDAAPGISASEFRKAIDSSLFKQWLKNMQSEAGVLSNGAMSLER 67

Query: 106 VLIQGVDMFGKRIGFLKFKADIFCKETGQK------------------------------ 135
           VLIQGVDMFG RIGFLKFKADI  KETG+K                              
Sbjct: 68  VLIQGVDMFGNRIGFLKFKADILDKETGKKVPGIVFARGPAVAVLILLDSEGEIYTVLTE 127

Query: 136 -VRVPTGRVILELPAGMLDDDKGDFVGTAVREVS 168
            VRVP G+ ILELPAGML++D+GDF+GTA REV 
Sbjct: 128 QVRVPVGKRILELPAGMLENDRGDFIGTAAREVE 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2118061	309	NUDX14 "nudix hydrolase homolo	0.709	0.411	0.622	2.6e-49
DICTYBASE|DDB_G0271376	253	DDB_G0271376 [Dictyostelium di	0.346	0.245	0.338	5.6e-09

TAIR|locus:2118061 NUDX14 "nudix hydrolase homolog 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 84/135 (62%), Positives = 100/135 (74%)

Query:     5 FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
             F  LP RL   PS   P  LH ++  ++  L C KM   SS S LT SIT+PSQ ++PV 
Sbjct:     4 FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KM--SSSSSSLTQSITLPSQPNEPVL 58

Query:    62 VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
             V A  G+S SDFR A++S+LF+ WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGFL
Sbjct:    59 VSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGFL 118

Query:   122 KFKADIFCKETGQKV 136
             KFKADIF KETGQKV
Sbjct:   119 KFKADIFDKETGQKV 133

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0019144 "ADP-sugar diphosphatase activity" evidence=IDA

GO:0080041 "ADP-ribose pyrophosphohydrolase activity" evidence=IDA

GO:0080042 "ADP-glucose pyrophosphohydrolase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

DICTYBASE|DDB_G0271376 DDB_G0271376 [Dictyostelium discoideum (taxid:44689)]

 Score = 111 (44.1 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
 Identities = 23/68 (33%), Positives = 37/68 (54%)

Query:    69 SESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIF 128
             +E      + +  F +W+K ++ E  +  N       + +Q VDMFGK +GFLKFKAD+ 
Sbjct:    23 NEISLETVMSAPNFNKWIKKMELEKELKVNS------ISVQSVDMFGKNVGFLKFKADVV 76

Query:   129 CKETGQKV 136
               + G+ V
Sbjct:    77 TVKEGRVV 84

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
PLN03143	291	PLN03143, PLN03143, nudix hydrolase; Provisional	2e-76
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	4e-06

>gnl|CDD|215602 PLN03143, PLN03143, nudix hydrolase; Provisional

 Score =  229 bits (586), Expect = 2e-76
 Identities = 111/194 (57%), Positives = 120/194 (61%), Gaps = 44/194 (22%)

Query: 5   FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVA 64
           F  LP R    PS                 S     SS SPLTHSIT+P Q  QPV VVA
Sbjct: 2   FTLLPSRPLALPSR----------MAHKEASSS---SSSSPLTHSITLPGQPGQPVLVVA 48

Query: 65  APGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFK 124
           APG+S SDFR A++S+LF+QWLKNLQSE+GILA G M LKQVLIQGVDMFGKRIGFLKFK
Sbjct: 49  APGISSSDFRKAIDSSLFRQWLKNLQSESGILAYGSMSLKQVLIQGVDMFGKRIGFLKFK 108

Query: 125 ADIFCKETGQK-------------------------------VRVPTGRVILELPAGMLD 153
           ADI  KETGQK                               VRVP G+ +LELPAGMLD
Sbjct: 109 ADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLD 168

Query: 154 DDKGDFVGTAVREV 167
           DDKGDFVGTAVREV
Sbjct: 169 DDKGDFVGTAVREV 182

Length = 291

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 137 RVPTGRVILELPAGMLDDDKGDFVGTAVRE 166
           R P G  +LELPAG++D  + D    A RE
Sbjct: 23  RPPVGGWLLELPAGLIDPGE-DPEEAARRE 51

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PLN03143	291	nudix hydrolase; Provisional	100.0
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.68
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.45
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.43
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.28
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.23
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	98.86
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	98.83
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	98.76
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	98.76
PRK10707	190	putative NUDIX hydrolase; Provisional	98.71
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	98.7
PRK15472	141	nucleoside triphosphatase NudI; Provisional	98.68
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	98.66
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	98.66
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	98.65
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	98.65
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	98.63
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	98.63
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	98.63
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	98.62
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	98.61
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	98.6
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	98.58
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	98.58
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	98.58
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	98.58
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	98.58
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	98.58
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	98.57
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	98.56
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	98.56
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	98.55
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	98.55
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	98.55
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	98.55
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	98.54
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	98.54
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	98.54
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	98.53
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	98.53
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	98.53
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	98.51
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	98.51
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	98.51
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	98.49
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	98.48
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	98.47
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	98.47
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	98.46
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	98.46
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	98.45
PLN02325	144	nudix hydrolase	98.45
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	98.45
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	98.45
PRK15393	180	NUDIX hydrolase YfcD; Provisional	98.45
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	98.43
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	98.42
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	98.4
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	98.39
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	98.39
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	98.38
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	98.35
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	98.34
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	98.3
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	98.28
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	98.28
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	98.28
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	98.23
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	98.17
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	98.16
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	98.16
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	98.13
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	98.1
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	98.06
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	98.01
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	97.85
PRK08999	312	hypothetical protein; Provisional	97.72
PLN02709	222	nudix hydrolase	97.65
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	97.65
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	97.47
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	96.5
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	96.42
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	96.11
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.04
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	95.93
PLN02791	770	Nudix hydrolase homolog	95.86
PLN02552	247	isopentenyl-diphosphate delta-isomerase	93.81
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	93.33
PLN02839	372	nudix hydrolase	92.69
KOG4195	275	consensus Transient receptor potential-related cha	92.06
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	91.61
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	86.09

>PLN03143 nudix hydrolase; Provisional

Probab=100.00  E-value=7.4e-42  Score=298.98  Aligned_cols=141  Identities=73%  Similarity=1.063  Sum_probs=128.9

Q ss_pred             eeeecCCCCCCCCceeEEEeCCCCCCCeEEEeCCCCCHHHHhhhhhCchHHHHHHHhhhccccccCCceeEEEEEEEEEE
Q 030311           33 VCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVD  112 (179)
Q Consensus        33 ~~~~~~~~~~~~~~t~t~~~p~~~~~~v~V~~~~~ls~~~l~~~~~~~~Fk~Wl~~l~~sl~llsd~~~~Lr~i~iq~vd  112 (179)
                      +++||+++++  ++|+||+||++++++|+|+++||+|++|++++++|++|++|+++|++++++|++++|.||+|.||+||
T Consensus        19 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~vd   96 (291)
T PLN03143         19 KEASSSSSSS--PLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGILAYGSMSLKQVLIQGVD   96 (291)
T ss_pred             ehhccCCCCC--CceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccccCCCceeEEEEEEEEe
Confidence            3444444444  79999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCceeeEEEEEEEEEecCCCce-------------------------------eeecCCcEEEEecccccCCCCCCHHH
Q 030311          113 MFGKRIGFLKFKADIFCKETGQK-------------------------------VRVPTGRVILELPAGMLDDDKGDFVG  161 (179)
Q Consensus       113 ~fG~~~gFlk~~adv~~~~~G~~-------------------------------~R~p~g~~~lElPAG~lD~~~e~p~~  161 (179)
                      +||+|+||+|++++.++..+|++                               ||+|+|.++||+||||+|+++|+|++
T Consensus        97 ~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~  176 (291)
T PLN03143         97 MFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVG  176 (291)
T ss_pred             cccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHH
Confidence            99999999999999888777743                               99999999999999999963579999


Q ss_pred             HHHHHHhhhhCcee
Q 030311          162 TAVREVSFILLLDF  175 (179)
Q Consensus       162 aA~REL~EETG~~i  175 (179)
                      ||+|||+|||||.+
T Consensus       177 aA~REL~EETG~~~  190 (291)
T PLN03143        177 TAVREVEEETGIKL  190 (291)
T ss_pred             HHHHHHHHHHCCcc
Confidence            99999999999975

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.68  E-value=1.1e-16  Score=135.87  Aligned_cols=110  Identities=34%  Similarity=0.400  Sum_probs=74.0

Q ss_pred             CceeEEEeCCCCCCCeEEEeCCCCCHHHHhhhhhCchHHHHHHHhhhccccccCCceeEEEEEEEEEEEeCceeeEEEEE
Q 030311           45 PLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFK  124 (179)
Q Consensus        45 ~~t~t~~~p~~~~~~v~V~~~~~ls~~~l~~~~~~~~Fk~Wl~~l~~sl~llsd~~~~Lr~i~iq~vd~fG~~~gFlk~~  124 (179)
                      ++| ++++|++.+.++-++.....  .++..   -..           ++ ..-.|..|++|.++  |.+|+-.-|--..
T Consensus         5 ~~~-~i~l~sq~ne~~~ss~~~kp--~~i~~---~~~-----------ie-~~~kWi~Lkkv~~q--D~~GKir~wes~~   64 (225)
T KOG3041|consen    5 SLT-SITLPSQPNEPTMSSATGKP--SKIIE---VED-----------IE-SDGKWIRLKKVLYQ--DPTGKIRDWESVQ   64 (225)
T ss_pred             cce-eeeccCCCCCceeecccCCc--hheee---eec-----------cc-CCccEEEEEEEEEE--cCCCceeeeehhe
Confidence            456 99999876666666655432  22221   111           11 22348999999987  8888622222222


Q ss_pred             EE--EE-----------ecCCC-------ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          125 AD--IF-----------CKETG-------QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       125 ad--v~-----------~~~~G-------~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      +.  +.           -..+|       +|||+|+|..++|+|||+||+ +|++++||.|||+|||||+-
T Consensus        65 Rttr~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~-ge~~~~aAiREl~EEtGy~g  134 (225)
T KOG3041|consen   65 RTTRVEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDD-GEDFEGAAIRELEEETGYKG  134 (225)
T ss_pred             ecccccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccC-CCchHHHHHHHHHHHhCccc
Confidence            21  11           11133       359999999999999999998 89999999999999999973

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.45  E-value=2.3e-13  Score=112.23  Aligned_cols=41  Identities=22%  Similarity=0.173  Sum_probs=37.2

Q ss_pred             ceeeecC------CcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          134 QKVRVPT------GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       134 ~~~R~p~------g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +|||+|+      +.++||+|||++|+ + +|++||+|||+|||||.+.
T Consensus        64 rQyR~~v~~~~~~~~~~lElPAG~vd~-~-~p~~aA~REL~EETGy~a~  110 (191)
T PRK15009         64 RQFRVATWVNGNESGQLIETCAGLLDN-D-EPEVCIRKEAIEETGYEVG  110 (191)
T ss_pred             EcccccccccCCCCceEEEEeccccCC-C-CHHHHHHHHHHHhhCCccc
Confidence            4699999      89999999999996 4 7999999999999999763

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.43  E-value=5.9e-13  Score=110.56  Aligned_cols=42  Identities=24%  Similarity=0.229  Sum_probs=38.6

Q ss_pred             ceeeecCCc-----EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          134 QKVRVPTGR-----VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       134 ~~~R~p~g~-----~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +|||+|++.     ++||+|||++|+ +|+|++||+|||.|||||++.
T Consensus        68 rQyR~~~~~~~~~~~~lE~PAG~vd~-gE~p~~aA~REL~EETGy~a~  114 (202)
T PRK10729         68 EQIRIAAYDTSETPWLLEMVAGMIEE-GESVEDVARREAIEEAGLIVG  114 (202)
T ss_pred             EeeecccccCCCCCeEEEccceEcCC-CCCHHHHHHHHHHHHhCceee
Confidence            579999954     899999999997 899999999999999999874

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.28  E-value=1.4e-11  Score=99.49  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=39.3

Q ss_pred             ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       134 ~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +|||++++.+.||+|||.+|. +|+|++||+|||+|||||++.
T Consensus        65 rq~r~~~~~~~~elPaG~ve~-gE~~~~aA~REl~EEtG~~~~  106 (185)
T PRK11762         65 REYAAGTERYELGFPKGLIDP-GETPLEAANRELKEEVGFGAR  106 (185)
T ss_pred             EeecCCCCCcEEEccceeCCC-CCCHHHHHHHHHHHHHCCCCc
Confidence            469999999999999999997 899999999999999999875

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.23  E-value=9.4e-12  Score=101.86  Aligned_cols=42  Identities=24%  Similarity=0.220  Sum_probs=38.5

Q ss_pred             ceeeecC-----CcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          134 QKVRVPT-----GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       134 ~~~R~p~-----g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +|||+|+     +.++||+|||++|. +|+|++||+|||+|||||.+.
T Consensus        63 rq~R~~~~~~~~~~~~lelPaG~ve~-gE~~~~aA~REl~EEtG~~~~  109 (185)
T TIGR00052        63 EQFRIAAYVNGEEPWLLELSAGMVEK-GESPEDVARREAIEEAGYQVK  109 (185)
T ss_pred             ECceeeeeecCCcceEEEECcEecCC-CCCHHHHHHHHccccccceec
Confidence            4699998     67899999999997 899999999999999999874

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.86  E-value=5e-09  Score=78.51  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             CcEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          141 GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       141 g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      +...|++|+|.++. +|++.+||+||+.||||+++.+
T Consensus        23 ~~~~w~lPGG~ve~-gEs~~~a~~REl~EEtGl~~~~   58 (121)
T cd04669          23 GKTYYVFPGGGIEE-GETPEEAAKREALEELGLDVRV   58 (121)
T ss_pred             CCCcEECCceeccC-CCCHHHHHHHHHHHhhCeeEee
Confidence            34578999999998 8999999999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=98.83  E-value=1.1e-08  Score=79.11  Aligned_cols=40  Identities=20%  Similarity=0.132  Sum_probs=34.2

Q ss_pred             eecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       137 R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      |.+.+...|++|+|.+|. +|++++||+||+.||||+++..
T Consensus        33 ~~~~~~~~w~lPgG~ve~-gEt~~~aa~REl~EEtGl~~~~   72 (142)
T cd04700          33 KGGPKKGLWHIPSGAVED-GEFPQDAAVREACEETGLRVRP   72 (142)
T ss_pred             cCCCCCCeEECCceecCC-CCCHHHHHHHHHHHhhCceeec
Confidence            444445678999999998 8999999999999999998863

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=98.76  E-value=4.9e-09  Score=80.48  Aligned_cols=31  Identities=26%  Similarity=0.236  Sum_probs=29.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      .|++|+|.+|. +|++++||+|||+||||+++
T Consensus        32 ~W~lPgG~ve~-gEs~~~aa~REl~EEtGl~~   62 (148)
T PRK09438         32 FWQSVTGSLEE-GETPAQTAIREVKEETGIDV   62 (148)
T ss_pred             cEeCCcccCCC-CCCHHHHHHHHHHHHhCcCc
Confidence            57999999998 89999999999999999987

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=98.76  E-value=9.5e-09  Score=77.22  Aligned_cols=40  Identities=35%  Similarity=0.370  Sum_probs=35.4

Q ss_pred             eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +|.+.+...|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        22 ~~~~~~~~~w~~PgG~ve~-gEs~~~aa~RE~~EE~Gl~~~   61 (137)
T cd03424          22 YRPPVGGWLLELPAGLIDP-GEDPEEAARRELEEETGYEAG   61 (137)
T ss_pred             eecCCCCEEEEeCCccCCC-CCCHHHHHHHHHHHHHCCCcc
Confidence            5666666789999999998 899999999999999999873

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=98.71  E-value=9.8e-09  Score=84.67  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=34.2

Q ss_pred             eeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          135 KVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       135 ~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ++|+..|.+  |+|||++|..++++++||+||++|||||...
T Consensus        54 ~~r~~~G~~--~~PGG~~e~~de~~~~tA~REl~EEtGl~~~   93 (190)
T PRK10707         54 HLRKHAGQV--AFPGGAVDPTDASLIATALREAQEEVAIPPS   93 (190)
T ss_pred             cccCCCCcE--EcCCcccCCCcccHHHHHHHHHHHHHCCCcc
Confidence            578888866  9999999963467999999999999999764

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=98.70  E-value=1e-08  Score=80.41  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.+||+|||.||||+.+.
T Consensus        26 ~W~lPGG~ve~-gEs~~~AA~REl~EETGl~v~   57 (145)
T cd03672          26 SWSFPKGKINK-DEDDHDCAIREVYEETGFDIS   57 (145)
T ss_pred             CEECCCccCCC-CcCHHHHHHHHHHHhhCccce
Confidence            57999999998 899999999999999999875

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=98.68  E-value=1.6e-08  Score=77.10  Aligned_cols=32  Identities=19%  Similarity=0.117  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++++||+||++||||+++.
T Consensus        32 ~W~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~   63 (141)
T PRK15472         32 QWALSGGGVEP-GERIEEALRREIREELGEQLL   63 (141)
T ss_pred             ceeCCcccCCC-CCCHHHHHHHHHHHHHCCcee
Confidence            57999999998 899999999999999999864

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=98.66  E-value=2.1e-08  Score=73.33  Aligned_cols=35  Identities=20%  Similarity=0.075  Sum_probs=31.3

Q ss_pred             cEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .-.|++|+|.+|. +|++++||+||+.||||+++..
T Consensus        24 ~~~w~lPgG~ve~-gE~~~~aa~RE~~EEtGl~~~~   58 (128)
T cd04684          24 EGRWDLPGGGIEP-GESPEEALHREVLEETGLTVEI   58 (128)
T ss_pred             CCeEECCCcccCC-CCCHHHHHHHHHHHHhCcEeec
Confidence            3467999999998 8999999999999999998753

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.66  E-value=5.9e-08  Score=74.20  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=28.3

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |.+|+|.+|. +|++++||.||++||||+++.
T Consensus        28 w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~~   58 (138)
T cd03674          28 WLQPGGHIDP-DESLLEAALRELREETGIELL   58 (138)
T ss_pred             EECCceecCC-CCCHHHHHHHHHHHHHCCCcc
Confidence            4779999998 899999999999999999753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.65  E-value=2e-08  Score=73.72  Aligned_cols=34  Identities=32%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             cEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .-.|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        25 ~~~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~v~   58 (120)
T cd04683          25 DGQWALPAGHLEK-GEDAVTAAVREAREEIGVTLD   58 (120)
T ss_pred             CCeEeCCccccCC-CCCHHHHHHHHHHHHHCCccC
Confidence            3478999999998 899999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.65  E-value=1.9e-08  Score=73.30  Aligned_cols=32  Identities=28%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++++||+||++||||+.+.
T Consensus        24 ~w~~PgG~ve~-gEt~~~aa~REl~EEtG~~~~   55 (120)
T cd04680          24 GWYLPGGGLER-GETFAEAARRELLEELGIRLA   55 (120)
T ss_pred             cEeCCCCcCCC-CCCHHHHHHHHHHHHHCCccc
Confidence            67999999998 899999999999999999886

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.63  E-value=6.4e-08  Score=72.05  Aligned_cols=34  Identities=32%  Similarity=0.311  Sum_probs=30.8

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ..|++|+|.+|. +|++++||.||++||||+.+..
T Consensus        27 ~~w~~PGG~ve~-gEt~~~aa~RE~~EE~Gl~~~~   60 (127)
T cd04670          27 NGWKLPGGLVDP-GEDIFDGAVREVLEETGIDTEF   60 (127)
T ss_pred             CcEECCCccCCC-CCCHHHHHHHHHHHHHCCCcce
Confidence            467999999998 8999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=98.63  E-value=2.2e-08  Score=73.60  Aligned_cols=33  Identities=27%  Similarity=0.154  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++++||.||+.||||+.+..
T Consensus        28 ~w~~PgG~v~~-gEs~~~aa~REl~EEtGl~~~~   60 (131)
T cd03673          28 DWSLPKGKLEP-GETPPEAAVREVEEETGIRAEV   60 (131)
T ss_pred             cccCCCCccCC-CCCHHHHHHHHHhhhhCCceEe
Confidence            56999999998 8999999999999999998763

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.63  E-value=2.4e-08  Score=74.40  Aligned_cols=32  Identities=25%  Similarity=0.241  Sum_probs=29.7

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      ..|++|+|.+|. +|++++||+||+.||||+++
T Consensus        27 g~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~   58 (117)
T cd04691          27 GKLNIPGGHIEA-GESQEEALLREVQEELGVDP   58 (117)
T ss_pred             CeEECcceeecC-CCCHHHHHHHHHHHHHCCCc
Confidence            467999999998 89999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=98.62  E-value=3.3e-08  Score=74.03  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             CcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          141 GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       141 g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +...|++|+|.+|. +|++.+||.||+.||||+.+.
T Consensus        22 ~~~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~   56 (134)
T cd03675          22 GGLVFNQPAGHLEP-GESLIEAAVRETLEETGWHVE   56 (134)
T ss_pred             CCceEECCCccCCC-CCCHHHHHHHHHHHHHCcccc
Confidence            44578999999998 899999999999999999874

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.61  E-value=3.6e-08  Score=71.76  Aligned_cols=33  Identities=18%  Similarity=0.144  Sum_probs=30.4

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      -.|++|+|.++. +|++++||+||+.||||+++.
T Consensus        25 ~~w~~PgG~ie~-gE~~~~aa~RE~~EEtGl~~~   57 (122)
T cd04673          25 GLWSFPGGKVEL-GETLEQAALRELLEETGLEAE   57 (122)
T ss_pred             CeEECCCcccCC-CCCHHHHHHHHHHHhhCcEee
Confidence            367999999998 899999999999999999975

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.60  E-value=8.6e-08  Score=71.63  Aligned_cols=34  Identities=24%  Similarity=0.214  Sum_probs=31.1

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ..|++|+|.+|. +|++++||+||+.||||+++..
T Consensus        25 ~~~~lPGG~ve~-gEt~~~aa~RE~~EEtGl~v~~   58 (128)
T cd04687          25 VWYILPGGGQEP-GETLEDAAHRECKEEIGIDVEI   58 (128)
T ss_pred             CeEECCCcccCC-CCCHHHHHHHHHHHHHCCcccc
Confidence            468999999998 8999999999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.58  E-value=3.8e-08  Score=73.17  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=30.0

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++++||.||+.||||+.++
T Consensus        30 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~   61 (122)
T cd04682          30 HWDLPGGHREG-GETPLECVLRELLEEIGLTLP   61 (122)
T ss_pred             cEeCCCccccC-CCCHHHHHHHHHHHHhCCccc
Confidence            67999999998 899999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=98.58  E-value=3.3e-08  Score=72.06  Aligned_cols=33  Identities=27%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ..|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        30 ~~~~~pgG~i~~-~E~~~~aa~REl~EE~g~~~~   62 (134)
T PF00293_consen   30 GYWELPGGGIEP-GESPEEAARRELKEETGLDVS   62 (134)
T ss_dssp             TEEESSEEEECT-TSHHHHHHHHHHHHHHSEEEE
T ss_pred             CeEecceeeEEc-CCchhhhHHhhhhhcccceec
Confidence            477999999998 899999999999999999974

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=98.58  E-value=3.8e-08  Score=79.86  Aligned_cols=32  Identities=25%  Similarity=0.128  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .||+|||.+|. +|++++||+|||.||||+.+.
T Consensus        46 ~~elPgG~vE~-gEt~~eaA~REl~EETG~~~~   77 (156)
T TIGR02705        46 GLEFPGGKVEP-GETSKEAAIREVMEETGAIVK   77 (156)
T ss_pred             cEECCceecCC-CCCHHHHHHHHHHHHhCcEee
Confidence            47999999998 899999999999999999874

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.58  E-value=8.5e-08  Score=73.66  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=29.0

Q ss_pred             EEEe-cccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++ |+|.+|. +|++++||+|||.||||+.+.
T Consensus        34 ~W~~~~gG~ve~-gEt~~~aa~REl~EEtGl~~~   66 (144)
T cd04692          34 LWDISSAGHILA-GETPLEDGIRELEEELGLDVS   66 (144)
T ss_pred             ccccccCcccCC-CCCHHHHHHHHHHHHhCCCCC
Confidence            6799 5999998 899999999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.58  E-value=1.3e-07  Score=74.32  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=33.6

Q ss_pred             eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      +|.|.+.  |++|+|.+++ +|++.+||+||+.||||+.+
T Consensus        19 ~r~~~~~--~~lPgG~ve~-~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663          19 FEHPLAG--FQIVKGTVEP-GETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEcCCCc--EECCCccCCC-CCCHHHHHHHHHHHHHCCee
Confidence            7777755  5999999998 89999999999999999996

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.58  E-value=3.6e-08  Score=73.36  Aligned_cols=32  Identities=16%  Similarity=0.117  Sum_probs=29.7

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.+||+||++||||+++.
T Consensus        27 ~w~lPGG~ve~-gEs~~~aa~REl~EEtGl~~~   58 (125)
T cd04696          27 LWGVPGGKVEW-GETLEEALKREFREETGLKLR   58 (125)
T ss_pred             cEeCCceeccC-CCCHHHHHHHHHHHHhCCccc
Confidence            57999999998 899999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.57  E-value=4e-08  Score=72.98  Aligned_cols=34  Identities=21%  Similarity=0.111  Sum_probs=30.8

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        28 ~~w~lPgG~ve~-gEt~~eaa~RE~~EEtGl~~~~   61 (125)
T cd04679          28 GHWGIPGGKVDW-MEAVEDAVVREIEEETGLSIHS   61 (125)
T ss_pred             CeEeCCeeeccC-CCCHHHHHHHHHHHHHCCCccc
Confidence            467999999998 8999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.56  E-value=5.8e-08  Score=73.25  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=31.3

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|++|+|.+|. +|+++++|+||+.||||+++.+
T Consensus        38 g~w~lPgG~ve~-gE~~~~a~~REl~EEtGl~~~~   71 (130)
T cd04511          38 GFWTLPAGFMEN-GETTEQGALRETWEEAGARVEI   71 (130)
T ss_pred             CeEECCcccccC-CCCHHHHHHHHHHHHhCCEEEe
Confidence            468999999998 8999999999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.56  E-value=5.7e-08  Score=72.13  Aligned_cols=32  Identities=19%  Similarity=0.102  Sum_probs=29.7

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+++.
T Consensus        24 ~~~lPGG~ve~-gEt~~~aa~REl~EEtGl~~~   55 (125)
T cd04689          24 HYFLPGGHVEP-GETAENALRRELQEELGVAVS   55 (125)
T ss_pred             CEECCCCcCCC-CCCHHHHHHHHHHHHhCceee
Confidence            57999999998 899999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=98.55  E-value=5.8e-08  Score=72.79  Aligned_cols=34  Identities=18%  Similarity=-0.021  Sum_probs=30.7

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        26 ~~w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~~   59 (137)
T cd03427          26 GGWNGPGGKVEP-GETPEECAIRELKEETGLTIDN   59 (137)
T ss_pred             CeEeCCceeCCC-CCCHHHHHHHHHHHhhCeEeec
Confidence            367999999998 8999999999999999998753

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.55  E-value=6.1e-08  Score=73.60  Aligned_cols=34  Identities=26%  Similarity=0.126  Sum_probs=31.1

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ..|++|+|.+|. +|++++||+||++||||+++..
T Consensus        26 ~~w~lPgG~ve~-gEt~~~aa~REl~EEtG~~~~~   59 (123)
T cd04671          26 GKWYLPAGRMEP-GETIEEAVKREVKEETGLDCEP   59 (123)
T ss_pred             CeEECceeecCC-CCCHHHHHHHHHHHHHCCeeec
Confidence            368999999998 8999999999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.55  E-value=6.3e-08  Score=70.35  Aligned_cols=33  Identities=33%  Similarity=0.347  Sum_probs=30.2

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++++||+||++||||+++.+
T Consensus        26 ~w~lPgG~v~~-~E~~~~aa~REl~EE~Gl~~~~   58 (129)
T cd04676          26 LWALPGGAVEP-GESPADTAVREVREETGLDVEV   58 (129)
T ss_pred             cEECCeeccCC-CCCHHHHHHHHHHHHhCceeEe
Confidence            57999999998 8999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=98.55  E-value=6e-08  Score=68.60  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=29.0

Q ss_pred             EEEEecccccCCCCCCHHH-HHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVG-TAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~-aA~REL~EETG~~i~  176 (179)
                      ..|++|+|.+|. +|++.. ||+||+.||||+.+.
T Consensus        36 ~~~~~PgG~ve~-~e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          36 GLWELPGGKVEP-GEELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             CceecCCcccCC-CCchHHHHHHHHHHHHhCCeee
Confidence            357999999997 677788 999999999999876

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=98.54  E-value=3.8e-08  Score=73.00  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++.+||.||+.||||+.+.
T Consensus        28 ~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~   59 (130)
T cd03428          28 HWDFPKGHVEP-GEDDLEAALRETEEETGITAE   59 (130)
T ss_pred             cCcCCcCCCCC-CCCHHHHHHHHHHHHHCCChh
Confidence            46999999998 899999999999999999875

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.54  E-value=6.4e-08  Score=76.31  Aligned_cols=32  Identities=22%  Similarity=0.074  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+++.
T Consensus        34 ~W~lPgG~ie~-~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662          34 AWSIPKGEYTE-GEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EEECCcccCCC-CcCHHHHHHHHHHHHhCCcce
Confidence            57999999998 899999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=98.54  E-value=6.7e-08  Score=73.88  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=30.5

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.++. +|++.+||.||+.||||+.+.+
T Consensus        27 ~W~fPgG~ve~-gEt~~eaa~REl~EEtGl~v~~   59 (132)
T cd04661          27 HWILPQGKREE-GETLRQTAERTLKELCGNNLKA   59 (132)
T ss_pred             eeECCcccccC-CCCHHHHHHHHHHHhhCCCceE
Confidence            67999999998 8999999999999999997664

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.53  E-value=6.2e-08  Score=73.66  Aligned_cols=31  Identities=16%  Similarity=0.164  Sum_probs=29.1

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+++
T Consensus        23 ~w~lPgG~ve~-gEt~~~aa~REl~EEtGl~~   53 (131)
T cd04686          23 DYKFPGGGVEK-GEDHIEGLIRELQEETGATN   53 (131)
T ss_pred             cEECccccCCC-CCCHHHHHHHHHHHHHCCcc
Confidence            47999999998 89999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.53  E-value=7.5e-08  Score=71.60  Aligned_cols=34  Identities=18%  Similarity=0.138  Sum_probs=30.8

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ..|++|+|.+|. +|++.+||.||+.||||+++..
T Consensus        23 ~~w~lPgG~ve~-gEs~~~aa~RE~~EEtGl~~~~   56 (126)
T cd04688          23 TFYRPPGGGIEF-GESSEEALIREFKEELGLKIEI   56 (126)
T ss_pred             CeEECCCccccC-CCCHHHHHHHHHHHHhCCceec
Confidence            367999999998 8999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.53  E-value=7.4e-08  Score=71.40  Aligned_cols=33  Identities=24%  Similarity=0.145  Sum_probs=30.0

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.++. +|++.+||.||+.||||+++..
T Consensus        31 ~w~~PgG~v~~-gEt~~~aa~REl~EE~Gi~~~~   63 (132)
T cd04677          31 DWGLPGGAMEL-GESLEETARRELKEETGLEVEE   63 (132)
T ss_pred             cEECCeeecCC-CCCHHHHHHHHHHHHhCCeeee
Confidence            36999999998 8999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.51  E-value=7.8e-08  Score=70.19  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=29.5

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++++||+||+.||||+.+.
T Consensus        24 ~w~~PgG~ve~-~Es~~~aa~REl~EEtGl~~~   55 (118)
T cd04690          24 VFYLPGGKIEA-GETPLQALIRELSEELGLDLD   55 (118)
T ss_pred             cEECCCCccCC-CCCHHHHHHHHHHHHHCCccC
Confidence            57999999998 899999999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.51  E-value=8e-08  Score=73.13  Aligned_cols=33  Identities=15%  Similarity=-0.039  Sum_probs=30.0

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|.+|+|.+|. +|++.+||+||+.||||+++..
T Consensus        27 ~w~~PgG~ve~-~E~~~~aa~RE~~EEtG~~~~~   59 (122)
T cd04666          27 RWIVPKGGPEK-DESPAEAAAREAWEEAGVRGKI   59 (122)
T ss_pred             eEECCCCCcCC-CCCHHHHHHHHHHHHhCCcccc
Confidence            46999999998 8999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=98.51  E-value=7.2e-08  Score=77.67  Aligned_cols=32  Identities=16%  Similarity=0.085  Sum_probs=29.9

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++++||+||+.||||+.+.
T Consensus        44 ~W~lPGG~VE~-GEt~~~Aa~REl~EEtGl~v~   75 (159)
T PRK15434         44 YWFVPGGRVQK-DETLEAAFERLTMAELGLRLP   75 (159)
T ss_pred             cEECCceecCC-CCCHHHHHHHHHHHHHCCccc
Confidence            56999999998 899999999999999999874

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=98.49  E-value=8.4e-08  Score=75.44  Aligned_cols=32  Identities=31%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             EEEecccccCCCC-CCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDK-GDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~-e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. + |++.+||.||+.||||+.+.
T Consensus        33 ~w~lPGG~ve~-gdEs~~eaa~REl~EEtGl~~~   65 (157)
T cd03426          33 QVAFPGGKVDP-GDEDPVATALREAEEEIGLPPD   65 (157)
T ss_pred             cEECCCCCcCC-CcCCHHHHHHHHHHHHhCCCcc
Confidence            56999999998 7 99999999999999999875

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=98.48  E-value=9.1e-08  Score=73.90  Aligned_cols=33  Identities=27%  Similarity=0.198  Sum_probs=30.1

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ..|++|+|++|. +|++.+||.||++||||+++.
T Consensus        27 ~~W~~PgG~~e~-gE~~~~aA~REv~EEtGl~~~   59 (147)
T cd03671          27 GAWQFPQGGIDE-GEDPEQAALRELEEETGLDPD   59 (147)
T ss_pred             CCEECCcCCCCC-CcCHHHHHHHHHHHHHCCCcC
Confidence            467999999998 899999999999999999863

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.47  E-value=1.3e-07  Score=70.30  Aligned_cols=33  Identities=27%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+.+
T Consensus        25 ~w~~PGG~ve~-gEs~~~aa~REl~EEtG~~~~~   57 (123)
T cd04672          25 LWSLPGGWADV-GLSPAENVVKEVKEETGLDVKV   57 (123)
T ss_pred             cEeCCccccCC-CCCHHHHHHHHHHHHhCCeeeE
Confidence            56999999998 8999999999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=98.47  E-value=1.1e-07  Score=73.91  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.++. +|++.+||+||++||||+.+..
T Consensus        39 ~w~lPGG~ve~-gEs~~~aa~RE~~EE~Gl~v~~   71 (144)
T cd03430          39 YWFVPGGRIRK-NETLTEAFERIAKDELGLEFLI   71 (144)
T ss_pred             cEECCCceecC-CCCHHHHHHHHHHHHHCCCccc
Confidence            57999999998 8999999999999999998753

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.46  E-value=1.2e-07  Score=70.57  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++.+||.||+.||||+.+.
T Consensus        28 ~w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~   59 (130)
T cd04681          28 TLDLPGGFVDP-GESAEEALIREIREETGLKVT   59 (130)
T ss_pred             cEeCCceeecC-CCCHHHHHHHHHHHHhCCccc
Confidence            68999999998 899999999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.46  E-value=1.3e-07  Score=69.38  Aligned_cols=31  Identities=23%  Similarity=0.140  Sum_probs=28.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      .|++|+|.++. +|++.+||.||+.||||+.+
T Consensus        22 ~w~~PgG~ve~-gE~~~~aa~REl~EEtGl~~   52 (112)
T cd04667          22 RWALPGGKIEP-GETPLQAARRELQEETGLQG   52 (112)
T ss_pred             cEeCCCCcCCC-CCCHHHHHHHHHHHHhCCcc
Confidence            46999999998 89999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=98.45  E-value=9.9e-08  Score=72.70  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             eecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       137 R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ++|.|.|  .+|+|.++. +|++++||+||+.||||+.+.
T Consensus        21 ~~~~~~w--~lPgG~ie~-gEt~~~aA~REl~EEtGl~~~   57 (131)
T cd03429          21 RFPPGMY--SLLAGFVEP-GESLEEAVRREVKEEVGIRVK   57 (131)
T ss_pred             CCCCCcC--cCCcccccC-CCCHHHHHhhhhhhccCceee
Confidence            3454544  789999998 899999999999999999874

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PLN02325 nudix hydrolase

Probab=98.45  E-value=3.8e-07  Score=71.21  Aligned_cols=34  Identities=29%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|.+|+|.+|. +|++.+||+||+.||||+++..
T Consensus        34 g~W~lPGG~ve~-gEs~~~aa~REv~EEtGl~v~~   67 (144)
T PLN02325         34 STFALPGGHLEF-GESFEECAAREVKEETGLEIEK   67 (144)
T ss_pred             CeEECCceeCCC-CCCHHHHHHHHHHHHHCCCCcc
Confidence            368999999998 8999999999999999998754

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.45  E-value=1.2e-07  Score=69.38  Aligned_cols=34  Identities=26%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|++|+|.++. +|++.+||.||+.||||+.+..
T Consensus        29 g~w~~PgG~ve~-gEs~~~aa~RE~~EE~Gl~~~~   62 (129)
T cd04699          29 GKWELPGGKVEE-GETFEEALKREVYEETGLTVTP   62 (129)
T ss_pred             CcCcCCccCccC-CCCHHHHHHHHHHHhhCcEEEe
Confidence            368999999998 8999999999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.45  E-value=1.3e-07  Score=71.40  Aligned_cols=31  Identities=16%  Similarity=0.005  Sum_probs=28.7

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |.+|+|.++. +|++.+||.||+.||||+++.
T Consensus        29 w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~   59 (131)
T cd04695          29 WCHVAGGVEA-GETAWQAALRELKEETGISLP   59 (131)
T ss_pred             EECCcccccC-CCCHHHHHHHHHHHHhCCCcc
Confidence            4789999998 899999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=98.45  E-value=5.6e-07  Score=72.88  Aligned_cols=39  Identities=18%  Similarity=0.131  Sum_probs=32.0

Q ss_pred             eeecCCcE----EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          136 VRVPTGRV----ILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       136 ~R~p~g~~----~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      +|.+.+.+    .+.+|+|.++. ||++++||+|||.||||+.+
T Consensus        55 ~R~~~~~~~pg~~~~~pGG~ve~-GEs~~eAA~REL~EEtGl~~   97 (180)
T PRK15393         55 RRTETKDFLPGMLDATAGGVVQA-GEQLLESARREAEEELGIAG   97 (180)
T ss_pred             EeCCCCCCCCCcccccCCCcCCC-CCCHHHHHHHHHHHHHCCCC
Confidence            67665543    23578999998 89999999999999999974

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=98.43  E-value=6.1e-07  Score=67.07  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=30.1

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.++. +|++.+||.||+.||||+.+..
T Consensus        31 ~w~~PgG~ve~-gE~~~~a~~RE~~EE~Gl~~~~   63 (135)
T PRK10546         31 LWEFAGGKVEP-GESQPQALIRELREELGIEATV   63 (135)
T ss_pred             cEECCcccCCC-CCCHHHHHHHHHHHHHCCcccc
Confidence            67999999997 8999999999999999998753

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.42  E-value=1.8e-07  Score=71.82  Aligned_cols=31  Identities=23%  Similarity=0.159  Sum_probs=29.2

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+
T Consensus        22 ~w~lPgG~ve~-gE~~~~aa~REl~EE~G~~~   52 (118)
T cd04665          22 GWEFPGGHVEP-GETIEEAARREVWEETGAEL   52 (118)
T ss_pred             EEECCccccCC-CCCHHHHHHHHHHHHHCCcc
Confidence            58999999998 89999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.40  E-value=1.6e-07  Score=70.15  Aligned_cols=31  Identities=26%  Similarity=0.237  Sum_probs=28.1

Q ss_pred             EEEec-ccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++| +|.++. +|++ +||+||++||||+.+.
T Consensus        29 ~w~~p~GG~ve~-gE~~-~aa~REl~EEtGl~~~   60 (127)
T cd04693          29 MWDLSVGGHVQA-GETS-TAAEREVKEELGLELD   60 (127)
T ss_pred             cccccCCCcCCC-CCCH-HHHHHHHHHHhCCCcC
Confidence            57998 789998 8999 9999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.39  E-value=1.9e-07  Score=69.67  Aligned_cols=32  Identities=25%  Similarity=0.098  Sum_probs=29.5

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      ..|++|+|.++. +|++.+||.||+.||||+.+
T Consensus        28 ~~w~~PgG~ve~-~Es~~~aa~RE~~EE~Gl~~   59 (129)
T cd04664          28 GFWQSVTGGIED-GESPAEAARREVAEETGLDP   59 (129)
T ss_pred             CcccccCcccCC-CCCHHHHHHHHHHHHHCCCh
Confidence            366899999998 89999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.39  E-value=4.1e-07  Score=68.41  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=28.5

Q ss_pred             EEEe-cccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++ |+|.++. +|++.++|+||+.||||+.+.
T Consensus        29 ~w~~~~GG~ve~-gE~~~~aa~REl~EEtGl~~~   61 (126)
T cd04697          29 YWDIAFGGVVQA-GESYLQNAQRELEEELGIDGV   61 (126)
T ss_pred             cccCcCCcccCC-CCCHHHHHHHHHHHHHCCCcc
Confidence            4799 5789998 899999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00586 mutt mutator mutT protein

Probab=98.38  E-value=1.5e-06  Score=63.98  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=30.1

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      -.|++|+|.++. +|+++++|.||+.||||+.+.
T Consensus        31 g~w~~Pgg~ve~-ge~~~~~~~RE~~EE~g~~~~   63 (128)
T TIGR00586        31 KLLEFPGGKEEG-GETPEQAVVRELEEEIGIPQH   63 (128)
T ss_pred             CeEECCCcccCC-CCCHHHHHHHHHHHHHCCcce
Confidence            378999999997 899999999999999999865

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=98.35  E-value=3.1e-07  Score=72.55  Aligned_cols=32  Identities=22%  Similarity=0.184  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|-+|+|.+|. ||++++||+||++||||+++.
T Consensus        36 ~WalPGG~ve~-GEt~eeaa~REl~EETgL~~~   67 (145)
T COG1051          36 YWALPGGFVEI-GETLEEAARRELKEETGLRVR   67 (145)
T ss_pred             cEeCCCccCCC-CCCHHHHHHHHHHHHhCCccc
Confidence            47999999998 899999999999999999964

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.34  E-value=3.9e-07  Score=67.79  Aligned_cols=34  Identities=29%  Similarity=0.167  Sum_probs=30.5

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|.+|+|.++. +|++.+||.||+.||||+.+..
T Consensus        28 ~~w~~PGG~ve~-gEt~~~Aa~REl~EE~Gl~~~~   61 (129)
T cd04678          28 GTWALPGGHLEF-GESFEECAAREVLEETGLHIEN   61 (129)
T ss_pred             CeEECCcccccC-CCCHHHHHHHHHHHHhCCcccc
Confidence            367999999998 8999999999999999998653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.30  E-value=5.8e-07  Score=63.39  Aligned_cols=33  Identities=30%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ..|++|+|.+|. +|++.++|+||++||+|+.+.
T Consensus        25 ~~~~~p~G~~~~-~e~~~~~a~RE~~EE~Gl~~~   57 (123)
T cd02883          25 GLWELPGGGVEP-GETLEEAAIREVREETGLDVD   57 (123)
T ss_pred             CeEeCCcccccC-CCCHHHHHHHHHHHhhCccce
Confidence            367999999998 899999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=98.28  E-value=4.2e-07  Score=78.31  Aligned_cols=38  Identities=18%  Similarity=0.153  Sum_probs=33.0

Q ss_pred             eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|.|.|  .|.+|||.+|. +|++++||+||++||||+++.
T Consensus       151 ~~~~~g--~wslPgG~vE~-GEs~eeAa~REv~EEtGl~v~  188 (256)
T PRK00241        151 PRHRNG--VYTVLAGFVEV-GETLEQCVAREVMEESGIKVK  188 (256)
T ss_pred             cCCCCC--cEeCcccCCCC-CCCHHHHhhhhhhhccCceee
Confidence            666655  45899999998 899999999999999999864

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=98.28  E-value=1.7e-06  Score=68.41  Aligned_cols=33  Identities=18%  Similarity=0.031  Sum_probs=30.2

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ..|++|+|.++. +|++.+||.||+.||||+.+.
T Consensus        32 ~~w~~P~G~~~~-gE~~~~aa~REl~EEtG~~~~   64 (156)
T PRK00714         32 HSWQFPQGGIDP-GETPEQAMYRELYEEVGLRPE   64 (156)
T ss_pred             CeEECCcccCCC-CcCHHHHHHHHHHHHhCCCcc
Confidence            468999999998 899999999999999999864

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=98.28  E-value=2.8e-06  Score=61.99  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=29.2

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.++|.||+.||||+.+.
T Consensus        32 ~w~~PgG~~~~-gE~~~~a~~Re~~EE~gl~~~   63 (129)
T PRK10776         32 KWEFPGGKIEA-GETPEQALIRELQEEVGITVQ   63 (129)
T ss_pred             eEECCceecCC-CCCHHHHHHHHHHHHHCCcee
Confidence            67999999997 899999999999999998853

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.23  E-value=9.5e-07  Score=68.26  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=30.7

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|++|+|.+|. +|++.+||+||+.||||+++..
T Consensus        29 ~~w~lPgG~ve~-~E~~~~aa~REl~EE~g~~~~~   62 (118)
T cd04674          29 GKLALPGGFIEL-GETWQDAVARELLEETGVAVDP   62 (118)
T ss_pred             CeEECCceecCC-CCCHHHHHHHHHHHHHCCcccc
Confidence            357999999998 8999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=98.17  E-value=2e-06  Score=61.68  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      -.|++|+|.++. +|+++++|.||+.||||+.+.
T Consensus        28 g~w~~p~G~~~~-~e~~~~~a~Re~~EE~g~~~~   60 (124)
T cd03425          28 GLWEFPGGKVEP-GETPEQALVRELREELGIEVE   60 (124)
T ss_pred             CeEeCCCcccCC-CCCHHHHHHHHHHHhhCcEEe
Confidence            378999999997 799999999999999999864

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.16  E-value=1.2e-06  Score=70.11  Aligned_cols=32  Identities=28%  Similarity=0.065  Sum_probs=29.1

Q ss_pred             EE-EecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 IL-ELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~l-ElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .| ++|||.++. +|++.+||+||++||||+.+.
T Consensus        65 ~wd~~~~G~v~~-gE~~~~aA~REl~EE~Gl~~~   97 (180)
T cd03676          65 MLDNLVAGGLGH-GEGPEETLVKECDEEAGLPED   97 (180)
T ss_pred             ceeeecccCCCC-CCCHHHHHHHHHHHHhCCCHH
Confidence            45 799999998 899999999999999999865

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=98.16  E-value=1.2e-06  Score=69.20  Aligned_cols=32  Identities=9%  Similarity=-0.172  Sum_probs=28.5

Q ss_pred             EEEec-ccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++| +|.+|. +|++++||+||+.||||+.+.
T Consensus        59 ~w~~~~gG~ie~-GEt~~eaa~REl~EEtGl~~~   91 (165)
T cd02885          59 LWTNTCCSHPLP-GEGVKDAAQRRLREELGITGD   91 (165)
T ss_pred             cccccccCCCCC-CCCHHHHHHHHHHHHhCCCcc
Confidence            45775 799998 899999999999999999875

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.13  E-value=5.5e-06  Score=64.13  Aligned_cols=32  Identities=16%  Similarity=-0.020  Sum_probs=30.0

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      ..|++|+|.++. +|++.+||.||+.||||+.+
T Consensus        28 ~~w~~PgG~ve~-gE~~~~a~~Re~~EE~G~~~   59 (133)
T cd04685          28 DWWFTPGGGVEP-GESPEQAARRELREETGITV   59 (133)
T ss_pred             CEEECCcCCCCC-CCCHHHHHHHHHHHHHCCcc
Confidence            478999999998 89999999999999999987

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=98.10  E-value=2.2e-06  Score=76.09  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=30.7

Q ss_pred             cEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .-.|.+|+|.+|. +|++++||+||+.||||+++.
T Consensus       227 ~g~W~lPGG~ve~-gEt~~~Aa~REl~EETGl~v~  260 (340)
T PRK05379        227 KGLWALPGGFLEQ-DETLLDACLRELREETGLKLP  260 (340)
T ss_pred             CCeEECCcccCCC-CCCHHHHHHHHHHHHHCCccc
Confidence            4467999999998 899999999999999999864

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=98.06  E-value=2.5e-06  Score=68.97  Aligned_cols=31  Identities=10%  Similarity=0.056  Sum_probs=27.4

Q ss_pred             EEec-ccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          145 LELP-AGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |.+| +|.++. +|++++||+||+.||||+++.
T Consensus        64 w~~~~gG~ve~-GEt~~~aa~REl~EEtGl~~~   95 (184)
T PRK03759         64 WTNSCCGHPQP-GESLEDAVIRRCREELGVEIT   95 (184)
T ss_pred             ccccccCCCCC-CCCHHHHHHHHHHHHhCCCcc
Confidence            4665 799998 899999999999999999874

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.01  E-value=4.6e-06  Score=65.66  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++++||+||+.||||+.+.
T Consensus        30 ~w~~PgG~v~~-~E~~~~aa~RE~~EE~gi~~~   61 (143)
T cd04694          30 VWVPPGGHVEL-GENLLEAGLRELNEETGLTLD   61 (143)
T ss_pred             eEECcccccCC-CCCHHHHHHHHHHHHHCCCcc
Confidence            67999999998 899999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=97.85  E-value=8.6e-06  Score=73.73  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=37.5

Q ss_pred             CceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          133 GQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       133 G~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |++-|+|-|  +|-.+||-+++ ||+.++||+||..||||++++
T Consensus       205 ~R~~r~~~g--l~t~lAGFlEp-GES~eeav~REtwEEtGi~V~  245 (345)
T KOG3084|consen  205 GRQKRYPPG--LWTCLAGFLEP-GESIEEAVRRETWEETGIEVE  245 (345)
T ss_pred             ecccCCCCc--hhhhhhccCCc-cccHHHHHHHHHHHHhCceee
Confidence            456899988  67999999998 999999999999999999986

>PRK08999 hypothetical protein; Provisional

Probab=97.72  E-value=9.8e-05  Score=63.37  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++.++|.||+.||||+.+.
T Consensus        33 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~   64 (312)
T PRK08999         33 LWEFPGGKVEP-GETVEQALARELQEELGIEVT   64 (312)
T ss_pred             eEECCccCCCC-CCCHHHHHHHHHHHHhCCcee
Confidence            78999999997 899999999999999999864

>PLN02709 nudix hydrolase

Probab=97.65  E-value=3.1e-05  Score=66.43  Aligned_cols=33  Identities=33%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|.+|+|++|++++++.+||.||++||+|+...
T Consensus        68 qiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~  100 (222)
T PLN02709         68 EVALPGGKRDEEDKDDIATALREAREEIGLDPS  100 (222)
T ss_pred             CccCCCcccCCCCCCHHHHHHHHHHHHHCCCch
Confidence            348999999984468999999999999999753

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=97.65  E-value=2.8e-05  Score=64.88  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=27.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCce
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLD  174 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~  174 (179)
                      .|.+|+|.+|. +|++.+||+|||.||||+.
T Consensus        61 ~walPGG~v~~-~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          61 EWAIPGGMVDP-GEKISATLKREFGEEALNS   90 (186)
T ss_pred             cCcCCeeeccC-CCCHHHHHHHHHHHHHccc
Confidence            47999999998 8999999999999999764

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=97.47  E-value=6.8e-05  Score=59.28  Aligned_cols=30  Identities=10%  Similarity=-0.075  Sum_probs=25.5

Q ss_pred             EEEec-ccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++| +|.++. +|  .+||.||++||||+.+.
T Consensus        56 ~W~~~~gG~v~~-GE--~eaa~REl~EE~Gl~~~   86 (158)
T TIGR02150        56 VWTNSCCSHPLP-GE--LEAAIRRLREELGIPAD   86 (158)
T ss_pred             CccccccCCCCc-cc--HHHHHHHHHHHHCCCcc
Confidence            56887 689997 77  59999999999999864

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=96.50  E-value=0.0021  Score=57.17  Aligned_cols=38  Identities=21%  Similarity=0.191  Sum_probs=32.0

Q ss_pred             eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      -|+.-|  ++-+-||-|+. ||+.++|.+||+.||+|++|.
T Consensus       163 ~~h~~g--~yS~LAGFVE~-GETlE~AV~REv~EE~Gi~V~  200 (279)
T COG2816         163 PRHFPG--MYSLLAGFVEP-GETLEQAVAREVFEEVGIKVK  200 (279)
T ss_pred             CCCCCc--ceeeeeecccC-CccHHHHHHHHHHHhhCeEEe
Confidence            444433  55788999998 999999999999999999985

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=96.42  E-value=0.0022  Score=52.47  Aligned_cols=32  Identities=22%  Similarity=0.049  Sum_probs=29.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      -|.||-|..++ +|+|..+|+||..||+|+.|+
T Consensus        37 AWSIPKGey~~-gEdp~~AArREf~EE~Gi~vd   68 (161)
T COG4119          37 AWSIPKGEYTG-GEDPWLAARREFSEEIGICVD   68 (161)
T ss_pred             cccccccccCC-CcCHHHHHHHHhhhhhceeec
Confidence            46999999998 899999999999999999874

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=96.11  E-value=0.0042  Score=54.51  Aligned_cols=31  Identities=29%  Similarity=0.275  Sum_probs=27.6

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      +-+|+|+.|..+++.+.+|.||.+||.|+..
T Consensus        76 v~fPGG~~d~~D~s~~~tAlREt~EEIGl~~  106 (246)
T KOG3069|consen   76 VCFPGGRRDPHDKSDIQTALRETEEEIGLDP  106 (246)
T ss_pred             eeCCCCcCCccccchHHHHHHHHHHHhCCCH
Confidence            3799999998677899999999999999864

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.04  E-value=0.0051  Score=56.29  Aligned_cols=34  Identities=24%  Similarity=0.065  Sum_probs=31.3

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      +++|++||.+|. +-+|.+.|..|+.||.||++..
T Consensus        79 ~tielc~g~idk-e~s~~eia~eev~eecgy~v~~  112 (405)
T KOG4432|consen   79 YTIELCAGLIDK-ELSPREIASEEVAEECGYRVDP  112 (405)
T ss_pred             eeeeeecccccc-ccCHHHHhHHHHHHHhCCcCCh
Confidence            689999999998 5799999999999999999864

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=95.93  E-value=0.0069  Score=49.55  Aligned_cols=32  Identities=19%  Similarity=0.046  Sum_probs=28.6

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      |=+|.|.+|+ +|+..+||.||..||.|.+-.+
T Consensus        38 wi~PKGGwE~-dE~~~eAA~REt~EEAGv~G~l   69 (145)
T KOG2839|consen   38 WIVPKGGWEP-DESVEEAALRETWEEAGVKGKL   69 (145)
T ss_pred             ccCCCCCCCC-CCCHHHHHHHHHHHHhCceeee
Confidence            4689999998 7999999999999999987654

>PLN02791 Nudix hydrolase homolog

Probab=95.86  E-value=0.0052  Score=61.09  Aligned_cols=32  Identities=19%  Similarity=0.127  Sum_probs=27.8

Q ss_pred             EEEe-cccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|.+ |+|.++. +|++.++|.|||+||+|+.+.
T Consensus        62 ~WDiS~gGHv~a-GEs~~eAA~REL~EELGI~l~   94 (770)
T PLN02791         62 QWDISSAGHISA-GDTSLLSAQRELEEELGIILP   94 (770)
T ss_pred             cccCcCCCCCCC-CCCHHHHHHHHHHHHhCCCCC
Confidence            4455 8999998 899999999999999999753

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=93.81  E-value=0.044  Score=47.70  Aligned_cols=17  Identities=18%  Similarity=0.051  Sum_probs=15.5

Q ss_pred             HHHHHHHHHhhhhCcee
Q 030311          159 FVGTAVREVSFILLLDF  175 (179)
Q Consensus       159 p~~aA~REL~EETG~~i  175 (179)
                      ..+||+|||.||||+.+
T Consensus       117 ~~eAA~REL~EElGI~~  133 (247)
T PLN02552        117 VKNAAQRKLLHELGIPA  133 (247)
T ss_pred             HHHHHHhHHHHHhCCCc
Confidence            67899999999999984

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=93.33  E-value=0.079  Score=48.69  Aligned_cols=33  Identities=36%  Similarity=0.186  Sum_probs=28.8

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .++|++||.+|+ .-+..+.|+||..||.||.+-
T Consensus       284 vTlELcag~Vd~-p~s~~e~a~~e~veecGYdlp  316 (405)
T KOG4432|consen  284 VTLELCAGRVDD-PFSDPEKAARESVEECGYDLP  316 (405)
T ss_pred             eeeeeecccCCC-CcccHHHHHHHHHHHhCCCCC
Confidence            689999999997 467778899999999999863

>PLN02839 nudix hydrolase

Probab=92.69  E-value=0.069  Score=49.44  Aligned_cols=30  Identities=20%  Similarity=-0.024  Sum_probs=26.7

Q ss_pred             EecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          146 ELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       146 ElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      -+.||++.. +++|.++++||..||.|+..+
T Consensus       238 n~VAGGi~a-Gesp~etliREa~EEAgLp~~  267 (372)
T PLN02839        238 HLVAGGLPH-GISCGENLVKECEEEAGISKA  267 (372)
T ss_pred             hccccCccC-CCCHHHHHHHHHHHHcCCCHH
Confidence            577899987 899999999999999999754

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=92.06  E-value=0.1  Score=46.17  Aligned_cols=27  Identities=26%  Similarity=0.286  Sum_probs=24.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhh
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFIL  171 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EET  171 (179)
                      .|.||+||+|+ +|..-.+-+||+.||.
T Consensus       151 ~WAiPGGmvdp-GE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  151 EWAIPGGMVDP-GEKVSATLKREFGEEA  177 (275)
T ss_pred             cccCCCCcCCc-hhhhhHHHHHHHHHHH
Confidence            35899999998 8999999999999996

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=91.61  E-value=0.088  Score=47.42  Aligned_cols=37  Identities=30%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             eecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCce
Q 030311          137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLD  174 (179)
Q Consensus       137 R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~  174 (179)
                      ....++-.|-+|.|.+++ +|++.+.|.||++||||.+
T Consensus       137 ~~~~~~~~wK~ptG~v~~-~e~i~~gavrEvkeetgid  173 (295)
T KOG0648|consen  137 GAVKIRGGWKLPTGRVEE-GEDIWHGAVREVKEETGID  173 (295)
T ss_pred             cceeecccccccceEecc-cccchhhhhhhhHHHhCcc
Confidence            333444578999999997 8999999999999999964

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=86.09  E-value=0.89  Score=32.35  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=27.2

Q ss_pred             eeecCCcE--EEEecccccCCCCCCHHHHHHHHHhhhhC
Q 030311          136 VRVPTGRV--ILELPAGMLDDDKGDFVGTAVREVSFILL  172 (179)
Q Consensus       136 ~R~p~g~~--~lElPAG~lD~~~e~p~~aA~REL~EETG  172 (179)
                      -|..-|-|  +||+|.|.++. +++.+++..||+.||.+
T Consensus        20 kR~~~gl~~glwefP~~~~~~-~~~~~~~~~~~~~~~~~   57 (118)
T cd03431          20 KRPEKGLLAGLWEFPSVEWEE-EADGEEALLSALKKALR   57 (118)
T ss_pred             ECCCCCCCCcceeCCCccccC-CcCHHHHHHHHHHHHhC
Confidence            35444444  89999998886 67888888899988864

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	5e-04
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	9e-04

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 137 RVPTGRVILELPAGMLDDDKGDFVGTAVRE 166
           R   GR + ELPAG+LD        TA RE
Sbjct: 64  RHTYGRRLWELPAGLLDVAGEPPHLTAARE 93

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 137 RVPTGRVILELPAGMLDDDKGDFVGTAVRE 166
           R P    I E+ AG ++  + D    A RE
Sbjct: 26  RYPLRATITEIVAGGVEKGE-DLGAAAARE 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.26
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.26
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.21
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.16
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.05
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	98.98
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	98.96
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	98.91
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	98.82
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	98.82
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	98.79
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	98.77
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	98.74
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	98.73
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	98.71
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	98.71
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	98.69
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	98.68
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	98.67
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	98.66
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	98.66
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	98.66
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	98.65
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	98.65
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	98.63
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	98.62
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	98.61
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	98.61
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	98.6
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	98.6
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	98.6
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	98.6
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	98.6
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	98.59
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	98.58
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	98.58
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	98.57
2b06_A	155	MUTT/nudix family protein; structural genomics, P	98.57
3grn_A	153	MUTT related protein; structural genomics, hydrola	98.57
3exq_A	161	Nudix family hydrolase; protein structure initiati	98.56
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	98.54
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	98.53
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	98.52
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	98.52
3f13_A	163	Putative nudix hydrolase family member; structural	98.51
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	98.5
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	98.5
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	98.49
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	98.49
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	98.48
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	98.48
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	98.46
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	98.46
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	98.45
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	98.44
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	98.43
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	98.42
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	98.39
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	98.38
2fb1_A	226	Conserved hypothetical protein; structural genomic	98.38
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	98.37
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	98.35
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	98.33
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	98.32
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	98.24
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	98.19
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	98.09
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	98.08
3e57_A	211	Uncharacterized protein TM1382; structural genomic	97.96
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	97.66
3bho_A	208	Cleavage and polyadenylation specificity factor su	97.48
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	97.37
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	97.34
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	97.28
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	97.23
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	97.17
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	96.11

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.26  E-value=6.4e-12  Score=100.93  Aligned_cols=41  Identities=24%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             eeeecCC-----cEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          135 KVRVPTG-----RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       135 ~~R~p~g-----~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +||+|.+     .+.||+|||++|+ +|+|++||+|||+|||||.+.
T Consensus        77 q~R~~~~~~~~~~~~welPgG~ve~-gE~~~~aA~REl~EEtGl~~~  122 (209)
T 1g0s_A           77 QIRIAAYDTSETPWLLEMVAGMIEE-GESVEDVARREAIEEAGLIVK  122 (209)
T ss_dssp             EECGGGGGGSSCSEEEECEEEECCT-TCCHHHHHHHHHHHHHCCCCC
T ss_pred             eecccCCCCCCCCeEEEeCcccCCC-CcCHHHHHHHHHHHHcCcccC
Confidence            5999986     5899999999998 899999999999999999874

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.26  E-value=9e-12  Score=98.37  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             cccCCceeEEEEEEEEEEEeCceeeEEEEEEE-----------EEecCCCc-----eeeecC------CcEEEEeccccc
Q 030311           95 ILANGDMLLKQVLIQGVDMFGKRIGFLKFKAD-----------IFCKETGQ-----KVRVPT------GRVILELPAGML  152 (179)
Q Consensus        95 llsd~~~~Lr~i~iq~vd~fG~~~gFlk~~ad-----------v~~~~~G~-----~~R~p~------g~~~lElPAG~l  152 (179)
                      ++.++|+++++.+++..+..|..   ....++           +++..+|+     ++|+|.      +...||+|||.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~g~~---~~~~r~~~~~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~v   88 (191)
T 3o6z_A           12 ILSDNYFTLHNITYDLTRKDGEV---IRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLL   88 (191)
T ss_dssp             EEECSSSEEEEEEEEEECTTSCE---EEEEEEEEECCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEEC
T ss_pred             EEecCcEEEEEEEEEEECCCCCE---EEEEEEEEecCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEe
Confidence            35678999998887433333332   112222           23322232     488887      788999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhhCceee
Q 030311          153 DDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       153 D~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |  +|++++||+||+.||||+.+.
T Consensus        89 e--gE~~~~aa~REl~EEtG~~~~  110 (191)
T 3o6z_A           89 D--NDEPEVCIRKEAIEETGYEVG  110 (191)
T ss_dssp             C--SSCHHHHHHHHHHHHC-CCCS
T ss_pred             C--CCCHHHHHHHHHHHHhCCccC
Confidence            9  589999999999999999864

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.21  E-value=7.6e-11  Score=94.22  Aligned_cols=42  Identities=29%  Similarity=0.346  Sum_probs=38.6

Q ss_pred             ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       134 ~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ++||+|.+...||+|||.+|. +|++++||+|||+|||||.+.
T Consensus        83 ~q~R~~~~~~~welPgG~ve~-gEs~~~aA~REl~EEtGl~~~  124 (212)
T 2dsc_A           83 KQFRPPMGGYCIEFPAGLIDD-GETPEAAALRELEEETGYKGD  124 (212)
T ss_dssp             EEEEGGGTEEEEECCEEECCT-TCCHHHHHHHHHHHHHCCCCE
T ss_pred             EeecCCCCCcEEECCccccCC-CCCHHHHHHHHHHHHhCCCcc
Confidence            358999988899999999998 899999999999999999875

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.16  E-value=7.8e-11  Score=93.85  Aligned_cols=41  Identities=20%  Similarity=0.131  Sum_probs=37.7

Q ss_pred             eeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          135 KVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       135 ~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ++|.+.+...||+|||.+|. +|++++||+|||.||||+.+.
T Consensus        67 q~r~~~~~~~welPgG~ve~-gEs~~~aA~REl~EEtGl~~~  107 (198)
T 1vhz_A           67 EYAVGTESYELGFSKGLIDP-GESVYEAANRELKEEVGFGAN  107 (198)
T ss_dssp             EEETTTTEEEEECEEEECCT-TCCHHHHHHHHHHHHHSEEEE
T ss_pred             cccCCCCCcEEEeCcccCCC-CcCHHHHHHHHHHHHHCCCcC
Confidence            48888888899999999998 899999999999999999875

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.05  E-value=1.1e-10  Score=87.20  Aligned_cols=41  Identities=24%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             eeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          135 KVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       135 ~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ++|.+.+...|++|+|.+|. +|++++||+||++||||+.+.
T Consensus        24 ~~r~~~~~~~w~~PgG~ve~-gEt~~~aa~REl~EEtGl~~~   64 (145)
T 2w4e_A           24 QFRYPLRATITEIVAGGVEK-GEDLGAAAARELLEEVGGAAS   64 (145)
T ss_dssp             EEETTTTEEEEECEEEECCT-TCCHHHHHHHHHHHHHCEECS
T ss_pred             EEecCCCCCEEEeCCccCCC-CCCHHHHHHHHHHHhhCCccC
Confidence            46777777789999999998 899999999999999999874

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=98.98  E-value=1e-09  Score=87.35  Aligned_cols=41  Identities=37%  Similarity=0.339  Sum_probs=37.5

Q ss_pred             eeeecCCcEEEEecccccC-CCCCCHHHHHHHHHhhhhCceee
Q 030311          135 KVRVPTGRVILELPAGMLD-DDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       135 ~~R~p~g~~~lElPAG~lD-~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ++|.+.+...|++|+|.+| . +|++++||+||+.||||+.+.
T Consensus        62 r~r~~~~~~~w~lPgG~ve~~-gEs~~~aa~REl~EEtGl~~~  103 (207)
T 1mk1_A           62 QYRHTYGRRLWELPAGLLDVA-GEPPHLTAARELREEVGLQAS  103 (207)
T ss_dssp             EEETTTTEEEEECCEEECCST-TCCHHHHHHHHHHHHHCEEEE
T ss_pred             eecCCCCCcEEEeCCccccCC-CCCHHHHHHHHHHHHHCCccc
Confidence            3788888889999999999 8 899999999999999999875

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=98.96  E-value=1.9e-10  Score=94.59  Aligned_cols=34  Identities=24%  Similarity=0.162  Sum_probs=31.3

Q ss_pred             cEEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      .++||+|||++|..+|++++||+|||+||||+.+
T Consensus        94 ~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~  127 (218)
T 3q91_A           94 GVTVELCAGLVDQPGLSLEEVACKEAWEECGYHL  127 (218)
T ss_dssp             CEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCC
T ss_pred             CeEEECCcceeCCCCCCHHHHHHHHHHHHhCCcc
Confidence            5799999999995378999999999999999987

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=98.91  E-value=3.3e-09  Score=81.49  Aligned_cols=40  Identities=33%  Similarity=0.407  Sum_probs=35.5

Q ss_pred             eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +|.+.+...|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus        61 ~~~~~~~~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~  100 (182)
T 2yvp_A           61 YRHPTGKFLLEVPAGKVDE-GETPEAAARRELREEVGAEAE  100 (182)
T ss_dssp             EEGGGTEEEEECCEEECCT-TCCHHHHHHHHHHHHHCEECS
T ss_pred             ccCCCCCcEEEeccccCCC-CcCHHHHHHHHHHHHhCCCcc
Confidence            5666666789999999998 899999999999999999864

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=98.82  E-value=3.3e-09  Score=80.86  Aligned_cols=39  Identities=31%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +|.+.+...|++|+|.+|. +|++++||+||+.||||+ +.
T Consensus        53 ~r~~~~~~~w~lPgG~ve~-gEs~~~aa~REl~EEtGl-~~   91 (170)
T 1v8y_A           53 MRPAVGLAPLEIPAGLIEP-GEDPLEAARRELAEQTGL-SG   91 (170)
T ss_dssp             CBTTTTBCCBBCSEEECCT-TCCHHHHHHHHHHHHHSE-EE
T ss_pred             EeCCCCCCEEECCccccCC-CCCHHHHHHHHHHHHHCC-Cc
Confidence            5666666678999999998 899999999999999999 54

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=98.82  E-value=6.4e-09  Score=77.00  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=33.1

Q ss_pred             cCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          139 PTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       139 p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      +.+...|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        25 ~~~~~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~~   62 (153)
T 3shd_A           25 INGKALWNQPAGHLEA-DETLVEAAARELWEETGISAQP   62 (153)
T ss_dssp             ETTEEEEECSEEECCT-TCCHHHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCEECCeEEeCC-CCCHHHHHHHHHHHHHCccccc
Confidence            3345578999999998 8999999999999999998753

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=98.79  E-value=4.4e-09  Score=79.05  Aligned_cols=32  Identities=22%  Similarity=0.128  Sum_probs=29.5

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. ||++.+||+||+.||||+.+.
T Consensus        37 ~W~lPgG~ve~-gEt~~~aa~REl~EEtGl~~~   68 (155)
T 3u53_A           37 HWTPPKGHVEP-GEDDLETALRETQEEAGIEAG   68 (155)
T ss_dssp             CEECSEEECCS-SCCHHHHHHHHHHHHHCCCGG
T ss_pred             CEECCeeeccC-CCCHHHHHHHHHHHHHCCccc
Confidence            46999999998 899999999999999999864

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=98.77  E-value=1.2e-08  Score=76.30  Aligned_cols=32  Identities=25%  Similarity=0.122  Sum_probs=29.8

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      |++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        27 W~~PgG~ve~-gEt~~~aa~RE~~EEtGl~~~~   58 (134)
T 3i7u_A           27 WSFPKGNIEP-GEKPEETAVREVWEETGVKGEI   58 (134)
T ss_dssp             EECCEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred             EECCeeEecC-CCCHHHHHHHHHHHhcCceEEE
Confidence            6999999998 8999999999999999998864

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=98.74  E-value=1.7e-08  Score=74.30  Aligned_cols=35  Identities=29%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             cEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ...|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        32 ~~~w~lPgG~ve~-gE~~~~aa~RE~~EEtGl~~~~   66 (153)
T 2b0v_A           32 AIKLNQPAGHLEP-GESIIQACSREVLEETGHSFLP   66 (153)
T ss_dssp             CCEEECSEEECCT-TSCHHHHHHHHHHHHHSEEEEE
T ss_pred             CCeEECCCcCcCC-CCCHHHHHHHHHHHhhCcEecc
Confidence            4478999999998 8999999999999999998763

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=98.73  E-value=5.4e-09  Score=78.47  Aligned_cols=33  Identities=15%  Similarity=0.010  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        29 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~   61 (159)
T 3f6a_A           29 KMLPLGGHIEV-NELPEEACIREAKEEAGLNVTL   61 (159)
T ss_dssp             CEECEEEECCT-TCCHHHHHHHHHHHHHCCCCEE
T ss_pred             eEECCccCccC-CCCHHHHHHHHHHHHhCCCcee
Confidence            45999999998 8999999999999999998864

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=98.71  E-value=5.5e-09  Score=77.23  Aligned_cols=33  Identities=30%  Similarity=0.222  Sum_probs=30.2

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        32 ~w~~PgG~ve~-gE~~~~aa~REl~EEtGl~~~~   64 (149)
T 3son_A           32 VWQFVAGGGED-EEAISETAKRESIEELNLDVDV   64 (149)
T ss_dssp             CEECEEEECCT-TCCHHHHHHHHHHHHHTCCSCC
T ss_pred             CEeCCccccCC-CCCHHHHHHHHHHHHhCCCccc
Confidence            45999999998 8999999999999999998764

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=98.69  E-value=2.3e-08  Score=75.61  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|++|+|.+|. +|++++||+||+.||||+.+..
T Consensus        46 ~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~~   79 (171)
T 3id9_A           46 RDWSLPGGRVEN-GETLEEAMIREMREETGLEVKI   79 (171)
T ss_dssp             CCEECCEEECCT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred             CeEECCCccCCC-CCCHHHHHHHHHHHHHCCcccc
Confidence            356999999998 8999999999999999998753

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=98.68  E-value=9.8e-09  Score=76.42  Aligned_cols=34  Identities=26%  Similarity=0.129  Sum_probs=30.8

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ..|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        46 ~~w~~PgG~ve~-gE~~~~aa~REl~EEtGl~~~~   79 (156)
T 3gg6_A           46 GSWYLPAGRMEP-GETIVEALQREVKEEAGLHCEP   79 (156)
T ss_dssp             TCEECSEEECCT-TCCHHHHHHHHHHHHHCEEEEE
T ss_pred             CEEECCeeeccC-CCCHHHHHHHHHHHhhCceeEe
Confidence            357999999998 8999999999999999998864

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=98.67  E-value=1e-08  Score=74.91  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      |++|+|.+|. +|++++||+||+.||||+.+..
T Consensus        39 w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~~   70 (139)
T 2yyh_A           39 LALPGGFVEV-GERVEEAAAREMREETGLEVRL   70 (139)
T ss_dssp             EECCEEECCT-TCCHHHHHHHHHHHHHCCCCEE
T ss_pred             EECccccCCC-CCCHHHHHHHHHHHHHCCCccc
Confidence            7999999998 8999999999999999998763

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=98.66  E-value=1.2e-08  Score=75.48  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus        39 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~   70 (165)
T 1f3y_A           39 AWQMPQGGIDE-GEDPRNAAIRELREETGVTSA   70 (165)
T ss_dssp             EEECCEEECCT-TCCHHHHHHHHHHHHHCCCSE
T ss_pred             cEECCeeccCC-CCCHHHHHHHHHHHhhCCChh
Confidence            67999999998 899999999999999999863

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=98.66  E-value=1.2e-08  Score=76.82  Aligned_cols=32  Identities=16%  Similarity=0.104  Sum_probs=29.9

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus        56 ~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~~   87 (165)
T 3oga_A           56 QWALSGGGVEP-GERIEEALRREIREELGEQLI   87 (165)
T ss_dssp             CEECCCEECCT-TCCHHHHHHHHHHHHHCSSCC
T ss_pred             eEECCccccCC-CCCHHHHHHHHHHHHhCCCcc
Confidence            57999999998 899999999999999999875

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=98.65  E-value=3.9e-08  Score=77.11  Aligned_cols=32  Identities=16%  Similarity=0.096  Sum_probs=29.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCce-ee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLD-FL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~-i~  176 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+. +.
T Consensus        70 ~w~lPgG~ve~-gEs~~eaa~REl~EEtGl~~~~  102 (197)
T 3fcm_A           70 SWAWTGGHSDN-EKDQLKVAIKELKEETGVKNPT  102 (197)
T ss_dssp             EEECEEEECTT-CCBHHHHHHHHHHHHHCCSSCE
T ss_pred             CEECCccccCC-CCCHHHHHHHHHHHHHCCCccc
Confidence            67999999997 8999999999999999998 54

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=98.65  E-value=3.2e-08  Score=71.92  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        35 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~   66 (150)
T 2o1c_A           35 FWQSVTGSVEE-GETAPQAAMREVKEEVTIDVV   66 (150)
T ss_dssp             CEESEEEECCT-TCCHHHHHHHHHHHHHCCCHH
T ss_pred             ceECCccccCC-CCCHHHHHHHHHHHHhCCCcc
Confidence            56999999998 899999999999999999875

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=98.63  E-value=2e-08  Score=71.66  Aligned_cols=33  Identities=21%  Similarity=0.115  Sum_probs=30.1

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        25 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~~   57 (126)
T 1vcd_A           25 FWVFPKGHPEP-GESLEEAAVREVWEETGVRAEV   57 (126)
T ss_dssp             CEECCEECCCT-TCCHHHHHHHHHHHHHCCEEEE
T ss_pred             CccCCcCcCCC-CCCHHHHHHHHHHHhhCcEeee
Confidence            36999999998 8999999999999999998863

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=98.62  E-value=2.1e-08  Score=72.55  Aligned_cols=30  Identities=23%  Similarity=0.166  Sum_probs=28.1

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCce
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLD  174 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~  174 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.
T Consensus        31 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~   60 (138)
T 1ktg_A           31 HWTPPKGHVDP-GEDEWQAAIRETKEEANIT   60 (138)
T ss_dssp             CEESSEEECCT-TCCHHHHHHHHHHHHHCCC
T ss_pred             cEeCCccccCC-CCCHHHHHHHHHHHHHCCC
Confidence            57999999998 8999999999999999993

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=98.61  E-value=2.2e-08  Score=73.49  Aligned_cols=33  Identities=15%  Similarity=0.196  Sum_probs=30.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        35 ~w~lPgG~ve~-gE~~~~aa~REl~EE~Gl~~~~   67 (140)
T 3gwy_A           35 RYEFPGGKVEE-GESLQEALQREIMEEMDYVIEV   67 (140)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred             eEECCCccCCC-CCCHHHHHHHHHHHhhCcEEEe
Confidence            57999999998 8999999999999999998764

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=98.61  E-value=2.2e-08  Score=73.07  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=30.0

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        42 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~~   74 (148)
T 2azw_A           42 AYFLPGGEIEG-TETKEEAIHREVLEELGISVEI   74 (148)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred             CEeCCCcccCC-CCCHHHHHHHHHHHHhCCeeEe
Confidence            45899999998 8999999999999999998753

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=98.60  E-value=2.4e-08  Score=74.13  Aligned_cols=33  Identities=18%  Similarity=0.014  Sum_probs=30.1

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        40 ~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~~~   72 (154)
T 2pqv_A           40 KYYTIGGAIQV-NESTEDAVVREVKEELGVKAQA   72 (154)
T ss_dssp             EEECEEEECBT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred             eEECcccCcCC-CCCHHHHHHHHHHHHhCCeeee
Confidence            46899999998 8999999999999999998763

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=98.60  E-value=2.2e-08  Score=75.24  Aligned_cols=33  Identities=12%  Similarity=0.077  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+++..
T Consensus        24 ~W~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~   56 (156)
T 1k2e_A           24 VYIYPGGHVEH-NETPIEAVKREFEEETGIVVEP   56 (156)
T ss_dssp             SEECSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred             cEECCeeecCC-CCCHHHHHHHHHHHHHCCccee
Confidence            36899999998 8999999999999999999864

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=98.60  E-value=3.7e-08  Score=77.51  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+.+
T Consensus        53 ~w~lPGG~ve~-gEs~~~aA~REl~EEtGl~~~~   85 (199)
T 3h95_A           53 MWKFPGGLSEP-EEDIGDTAVREVFEETGIKSEF   85 (199)
T ss_dssp             SBBCCEEECCT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred             CEECCccccCC-CCCHHHHHHHHHHHHhCCcccc
Confidence            46999999998 8999999999999999998764

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=98.60  E-value=2.2e-08  Score=79.73  Aligned_cols=33  Identities=24%  Similarity=0.131  Sum_probs=30.2

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++++||+||+.||||+++..
T Consensus        67 ~W~lPgG~ve~-gEt~~eaa~REl~EEtGl~~~~   99 (194)
T 2fvv_A           67 RWIVPGGGMEP-EEEPSVAAVREVCEEAGVKGTL   99 (194)
T ss_dssp             SEECSEEECCT-TCCHHHHHHHHHHHHHCEEEEE
T ss_pred             cEECCCCcCCC-CcCHHHHHHHHHHHHhCCcccc
Confidence            46999999998 8999999999999999998763

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=98.60  E-value=2.4e-08  Score=73.88  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=30.3

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      -.|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        43 ~~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~   75 (159)
T 1sjy_A           43 GLWHIPSGAVED-GENPQDAAVREACEETGLRVR   75 (159)
T ss_dssp             CCEECSEEECCT-TSCHHHHHHHHHHHHHSCCEE
T ss_pred             CeEECCccccCC-CCCHHHHHHHHHHHHHCccce
Confidence            357999999998 899999999999999999875

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=98.59  E-value=2.5e-08  Score=75.23  Aligned_cols=34  Identities=21%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ..|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        54 ~~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~   87 (157)
T 4dyw_A           54 GCWGLPGGKVDW-LEPVERAVCREIEEELGIALER   87 (157)
T ss_dssp             TCEECCEEECCT-TCCHHHHHHHHHHHHHSCEEES
T ss_pred             CEEECCcccCCC-CCCHHHHHHHHHHHHHCccccc
Confidence            467999999998 8999999999999999998853

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=98.58  E-value=7.9e-08  Score=70.00  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.++. +|++.+||+||+.||||+.+..
T Consensus        36 ~w~lPgG~ve~-gE~~~~aa~RE~~EE~Gl~~~~   68 (144)
T 3r03_A           36 LWEFPGGKLEP-GETPEAALVRELAEELGVDTRA   68 (144)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHCCBCCG
T ss_pred             cEECCCcEecC-CCCHHHHHHHHHHHHhCceeec
Confidence            57999999998 8999999999999999998754

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.7e-08  Score=74.15  Aligned_cols=32  Identities=19%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        29 ~w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~   60 (146)
T 2jvb_A           29 SWSFPRGKISK-DENDIDCCIREVKEEIGFDLT   60 (146)
T ss_dssp             CCBCCEECCCS-SSCHHHHHHHHHHHHTSCCCS
T ss_pred             cEECCcccCCC-CCCHHHHHHHHHHHHHCCCch
Confidence            46999999998 899999999999999999875

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=98.57  E-value=2.3e-08  Score=77.65  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=30.1

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ..|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus        67 g~w~lPGG~ve~-gEs~~~aa~REl~EEtGl~~~   99 (187)
T 3i9x_A           67 GKWAVPGGFVDE-NESAEQAAERELEEETSLTDI   99 (187)
T ss_dssp             TCEECSEEECCT-TSCHHHHHHHHHHHHHCCCSC
T ss_pred             CEEECCceeCCC-CCCHHHHHHHHHHHHHCCCCc
Confidence            357999999998 899999999999999999864

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=98.57  E-value=3.5e-08  Score=73.10  Aligned_cols=31  Identities=19%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        38 w~lPgG~ve~-gE~~~~aa~RE~~EEtGl~~~   68 (155)
T 2b06_A           38 YAFPGGHVEN-DEAFAESVIREIYEETGLTIQ   68 (155)
T ss_dssp             EECCCCBCCT-TSCHHHHHHHHHHHHHSEEEE
T ss_pred             EeccceecCC-CCCHHHHHHHHHHHHhCcccc
Confidence            6999999998 899999999999999999876

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=98.57  E-value=2.7e-08  Score=74.00  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=30.7

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        36 g~w~~PgG~ve~-gE~~~~aa~REl~EE~Gl~~~~   69 (153)
T 3grn_A           36 GKWDLPGGKVNP-DESLKEGVAREVWEETGITMVP   69 (153)
T ss_dssp             TCEECSEEECCT-TCCHHHHHHHHHHHHHCCCCCC
T ss_pred             CeEECceeecCC-CCCHHHHHHhhhhhhhCcEeec
Confidence            357999999998 8999999999999999998763

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=98.56  E-value=2.8e-08  Score=75.29  Aligned_cols=31  Identities=23%  Similarity=0.187  Sum_probs=29.3

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        39 w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~   69 (161)
T 3exq_A           39 HSFPGGHVEV-GEPCATAAIREVFEETGLRLS   69 (161)
T ss_dssp             BBCCCCBCCT-TSCHHHHHHHHHHHHHCCEES
T ss_pred             EEccceecCC-CCCHHHHHHHHHHHhhCcEec
Confidence            6999999998 899999999999999999875

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=98.54  E-value=6.9e-08  Score=74.78  Aligned_cols=32  Identities=16%  Similarity=-0.053  Sum_probs=29.7

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus        51 ~W~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~   82 (176)
T 3q93_A           51 RWNGFGGKVQE-GETIEDGARRELQEESGLTVD   82 (176)
T ss_dssp             SEECEEEECCT-TSCHHHHHHHHHHHHHSCEES
T ss_pred             eEECceecCCC-CCCHHHHHHHHHHHHHCCcce
Confidence            46999999998 899999999999999999875

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=98.53  E-value=4.4e-08  Score=76.54  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=30.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+..
T Consensus        66 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~   98 (189)
T 3cng_A           66 KWTLPAGFMEN-NETLVQGAARETLEEANARVEI   98 (189)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred             eEECceeeccC-CCCHHHHHHHHHHHHHCCcccc
Confidence            47999999998 8999999999999999998764

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=98.52  E-value=4.7e-08  Score=77.77  Aligned_cols=33  Identities=21%  Similarity=0.001  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        91 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~v~~  123 (205)
T 3q1p_A           91 KWALPGGWADV-GYTPTEVAAKEVFEETGYEVDH  123 (205)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred             cEECCcCccCC-CCCHHHHHHHHHHHHHCCcccc
Confidence            56999999998 8999999999999999999864

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=98.52  E-value=3.5e-08  Score=80.72  Aligned_cols=32  Identities=22%  Similarity=0.207  Sum_probs=30.0

Q ss_pred             EEEecccccCCCCC-CHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKG-DFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e-~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +| ++++||+||++||||+.+.
T Consensus        76 ~w~lPGG~ve~-gE~t~~eaa~REl~EEtGl~~~  108 (217)
T 2xsq_A           76 RLGFPGGFVDT-QDRSLEDGLNRELREELGEAAA  108 (217)
T ss_dssp             CEECSEEECCT-TCSSHHHHHHHHHHHHHCGGGG
T ss_pred             eEECCceecCC-CCCCHHHHHHHHHHHHHCCCCc
Confidence            57999999998 89 9999999999999999876

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=98.51  E-value=4e-08  Score=76.13  Aligned_cols=32  Identities=19%  Similarity=0.091  Sum_probs=29.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        38 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~   69 (163)
T 3f13_A           38 RYNLPGGKANR-GELRSQALIREIREETGLRIN   69 (163)
T ss_dssp             -BBCSEEECCT-TCCHHHHHHHHHHHHHCCCCC
T ss_pred             eEECCceeCCC-CCCHHHHHHHHHHHHHCcccc
Confidence            56999999998 899999999999999999875

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=98.50  E-value=5e-08  Score=72.24  Aligned_cols=32  Identities=16%  Similarity=0.085  Sum_probs=29.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        45 ~w~~PgG~ve~-gE~~~~aa~REl~EEtGl~~~   76 (160)
T 1rya_A           45 YWFVPGGRVQK-DETLEAAFERLTMAELGLRLP   76 (160)
T ss_dssp             SEECCEEECCT-TCCHHHHHHHHHHHHHSSCCC
T ss_pred             EEECCccccCC-CCCHHHHHHHHHHHHHCCCCC
Confidence            46999999998 899999999999999999863

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=98.50  E-value=4.4e-08  Score=76.06  Aligned_cols=32  Identities=28%  Similarity=0.304  Sum_probs=29.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus        65 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~   96 (194)
T 1nqz_A           65 QIAFPGGSLDA-GETPTQAALREAQEEVALDPA   96 (194)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHCCCGG
T ss_pred             eEECCcccCCC-CCCHHHHHHHHHHHHHCCCcc
Confidence            46999999998 899999999999999999764

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=98.49  E-value=1.4e-07  Score=70.45  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        57 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~~   89 (158)
T 3hhj_A           57 LWEFPGGKVEQ-GETPEASLIRELEEELGVHVQA   89 (158)
T ss_dssp             CCBCCEEECCT-TCCHHHHHHHHHHHHHCCBCCG
T ss_pred             EEECCceeecC-CCCHHHHHHHHHHHHhCcEeec
Confidence            67999999998 8999999999999999998754

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=98.49  E-value=6.9e-08  Score=70.56  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||.||+.||||+.+..
T Consensus        49 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~~   81 (153)
T 3ees_A           49 QWEFPGGKIEN-GETPEEALARELNEELGIEAEV   81 (153)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHSCEEEC
T ss_pred             eEECCceeeCC-CCCHHHHHHHHHHHHHCCcccc
Confidence            67999999998 8999999999999999998764

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=98.48  E-value=6.9e-08  Score=73.58  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=28.8

Q ss_pred             EEEe-cccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      .|++ |+|.+|. +|++.+||+||+.||||+.+
T Consensus        66 ~w~l~pGG~ve~-gE~~~~aa~REl~EEtGl~~   97 (180)
T 2fkb_A           66 MLDATAGGVVQA-DEQLLESARREAEEELGIAG   97 (180)
T ss_dssp             CEESSBCCBCBT-TCCHHHHHHHHHHHHHCCBS
T ss_pred             cEEeecCCCCCC-CCCHHHHHHHHHHHHHCCCc
Confidence            5799 9999998 89999999999999999975

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=98.48  E-value=7.2e-08  Score=69.71  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=29.9

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++++||.||+.||||+.+.
T Consensus        36 ~w~lPgG~ve~-gE~~~~aa~RE~~EE~Gl~~~   67 (140)
T 2rrk_A           36 LWEFAGGKVEP-DESQRQALVRELREELGIEAT   67 (140)
T ss_dssp             CEECCEEECCT-TSCHHHHHHHHHHHHSCEEEE
T ss_pred             EEECCceecCC-CCCHHHHHHHHHHHHHCCeee
Confidence            67999999998 899999999999999999875

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=98.46  E-value=5.1e-08  Score=69.39  Aligned_cols=33  Identities=21%  Similarity=0.154  Sum_probs=30.0

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      -.|++|+|.+|. +|++.+||.||+.||||+.+.
T Consensus        31 g~w~~PgG~~e~-gE~~~~aa~RE~~EE~G~~~~   63 (129)
T 1mut_A           31 NKLEFPGGKIEM-GETPEQAVVRELQEEVGITPQ   63 (129)
T ss_dssp             CCEECCCCCSSS-CSSTTHHHHHHHHTTTCCSSC
T ss_pred             CeEECCccCcCC-CCCHHHHHHHHHHHHhCCccc
Confidence            357999999998 899999999999999999865

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=98.46  E-value=7.5e-08  Score=74.71  Aligned_cols=32  Identities=9%  Similarity=0.070  Sum_probs=29.7

Q ss_pred             EEEe-cccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++ |+|.+|. +|++++||+||+.||||+.+.
T Consensus        61 ~w~~~PgG~ve~-gEt~~~aa~REl~EEtGl~~~   93 (190)
T 1hzt_A           61 VWTNSVCGHPQL-GESNEDAVIRRCRYELGVEIT   93 (190)
T ss_dssp             CEEESEEECCCT-TCCHHHHHHHHHHHHHCCCBS
T ss_pred             cccCcccccCCC-CCCHHHHHHHHHHHHHCCCch
Confidence            5799 9999998 899999999999999999875

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=98.45  E-value=9.2e-08  Score=76.13  Aligned_cols=33  Identities=27%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        92 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~  124 (206)
T 3o8s_A           92 LWSLPGGWCDV-DQSVKDNVVKEVKEEAGLDVEA  124 (206)
T ss_dssp             CEECSEEECCT-TSCHHHHHHHHHHHHHCEEEEE
T ss_pred             eEECCeeccCC-CCCHHHHHHHHHHHHHCCccee
Confidence            46999999998 8999999999999999998753

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=98.44  E-value=8.8e-08  Score=75.26  Aligned_cols=32  Identities=16%  Similarity=0.073  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus        27 ~W~lPGG~ve~-gEs~~~aa~REl~EEtGl~~~   58 (188)
T 3fk9_A           27 WWVAPGGKMEA-GESILETVKREYWEETGITVK   58 (188)
T ss_dssp             CEECCEEECCT-TCCHHHHHHHHHHHHHSCEES
T ss_pred             eEECCeecccC-CCCHHHHHHHHHHHHHCCCCC
Confidence            46999999998 899999999999999999875

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=98.43  E-value=6.4e-08  Score=81.54  Aligned_cols=32  Identities=28%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. ||++++||+||+.||||+.+.
T Consensus       127 ~W~lPgG~ve~-gEs~~eAA~REl~EEtGl~~~  158 (271)
T 2a6t_A          127 GWGFPKGKIDK-DESDVDCAIREVYEETGFDCS  158 (271)
T ss_dssp             CCBCSEEECCT-TCCHHHHHHHHHHHHHCCCCT
T ss_pred             eEECCcccCCC-CcCHHHHHHHHHHHHhCCCce
Confidence            36999999998 899999999999999999875

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=98.42  E-value=9.8e-08  Score=73.14  Aligned_cols=32  Identities=16%  Similarity=0.060  Sum_probs=29.5

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.++. +|++.+||+||+.||||+.+.
T Consensus        32 ~w~~p~G~~e~-gE~~~~aa~RE~~EE~G~~~~   63 (164)
T 2kdv_A           32 SWQFPQGGINP-GESAEQAMYRELFEEVGLSRK   63 (164)
T ss_dssp             CEECCEEECCT-TCCHHHHHHHHHHHHHCCCGG
T ss_pred             eEECCeeecCC-CCCHHHHHHHHHHHHHCCCcc
Confidence            46999999998 899999999999999999864

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=98.39  E-value=1.1e-07  Score=76.55  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             EEEecccccCCCCC-CHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKG-DFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e-~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +| ++++||+||++||||+.+.
T Consensus        67 ~w~~PGG~ve~-gE~t~~~aa~REl~EEtGl~~~   99 (212)
T 1u20_A           67 RLGFPGGFVDT-RDISLEEGLKRELEEELGPALA   99 (212)
T ss_dssp             CEECSEEEECT-TTSCHHHHHHHHHHHHHCGGGG
T ss_pred             eEECCCcccCC-CCCCHHHHHHHHHHHHHCCCcc
Confidence            56999999998 89 9999999999999999875

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=98.38  E-value=1.7e-07  Score=80.54  Aligned_cols=33  Identities=24%  Similarity=0.170  Sum_probs=30.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+.+
T Consensus        50 ~W~lPgG~ve~-gEs~~~AA~REl~EEtGl~~~~   82 (364)
T 3fjy_A           50 DWSWPKGKLEQ-NETHRHAAVREIGEETGSPVKL   82 (364)
T ss_dssp             EEECCEEECCT-TCCHHHHHHHHHHHHHSCCEEE
T ss_pred             CEECCcCCCCC-CCCHHHHHHHHHHHHhCCeeee
Confidence            56999999998 8999999999999999998864

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=98.38  E-value=1.3e-07  Score=76.99  Aligned_cols=32  Identities=16%  Similarity=0.142  Sum_probs=29.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+|||.||||+.+.
T Consensus        43 ~w~lPGG~ve~-gEs~~~Aa~REl~EEtGl~~~   74 (226)
T 2fb1_A           43 EWSLMGGFVQK-DESVDDAAKRVLAELTGLENV   74 (226)
T ss_dssp             CEECEEEECCT-TSCHHHHHHHHHHHHHCCCSC
T ss_pred             CEECCeeccCC-CCCHHHHHHHHHHHHHCCCCC
Confidence            46999999998 899999999999999999875

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=98.37  E-value=8.6e-08  Score=72.46  Aligned_cols=32  Identities=16%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             EEE-ecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILE-LPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lE-lPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|+ +|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        63 ~w~~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~   95 (171)
T 1q27_A           63 ALDVSVGGAVQS-GETYEEAFRREAREELNVEID   95 (171)
T ss_dssp             SCCCSEEEECSS-SSCHHHHHHHHHHHHHSCTTS
T ss_pred             ccccccCccccC-CCCHHHHHHHHHHHHHCCccc
Confidence            579 99999998 899999999999999999865

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=98.35  E-value=1.7e-07  Score=78.03  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+||+.||||+++.
T Consensus       229 ~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~~  260 (341)
T 2qjo_A          229 LIALPGGFIKQ-NETLVEGMLRELKEETRLKVP  260 (341)
T ss_dssp             CEECSEEECCT-TSCHHHHHHHHHHHHHCCSSC
T ss_pred             eEECCCCcCCC-CCCHHHHHHHHHhhhhCCccc
Confidence            46999999998 899999999999999999875

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=98.33  E-value=2e-07  Score=78.40  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=29.9

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+||+.||||+++.
T Consensus       234 ~w~lPgG~ve~-gEt~~~aa~REl~EEtGl~v~  265 (352)
T 2qjt_B          234 LWALPGGFLEC-DETIAQAIIRELFEETNINLT  265 (352)
T ss_dssp             CEECSEEECCT-TSCHHHHHHHHHHHHHCCSCC
T ss_pred             eEECCCCcCCC-CCCHHHHHHHHHHHhhCCCcc
Confidence            56999999998 899999999999999999875

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=98.32  E-value=2.3e-07  Score=78.92  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=28.7

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      .|++|+|++|. +|++.+||+|||.||||+.+
T Consensus       151 ~W~lPGG~Ve~-GEs~~eAA~REl~EETGl~~  181 (292)
T 1q33_A          151 EWAIPGGMVDP-GEKISATLKREFGEEALNSL  181 (292)
T ss_dssp             SEECCCEECCT-TCCHHHHHHHHHHHHHSCGG
T ss_pred             cEeCCCcccCC-CCCHHHHHHHHHHHHhCCcc
Confidence            46999999998 89999999999999999984

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=98.24  E-value=4.4e-07  Score=75.94  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.2

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. +|++++||+|||.||||+.+.
T Consensus        71 ~W~lPGG~ve~-gEs~~~AA~REl~EEtGl~v~  102 (273)
T 2fml_A           71 SWALPGGFVNR-NESTEDSVLRETKEETGVVIS  102 (273)
T ss_dssp             CEECCEEECCT-TSCHHHHHHHHHHHHHCCCCC
T ss_pred             cEECCccCCCC-CcCHHHHHHHHHHHHHCCCCC
Confidence            46999999998 899999999999999998754

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=98.19  E-value=6e-07  Score=76.01  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=29.8

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|||.+|. +|++++||+||+.||||+++.
T Consensus       165 ~w~lPgG~vE~-GEt~eeAa~REv~EEtGl~v~  196 (269)
T 1vk6_A          165 VHTVLAGFVEV-GETLEQAVAREVMEESGIKVK  196 (269)
T ss_dssp             CCBCEEEECCT-TCCHHHHHHHHHHHHHCCEEE
T ss_pred             cEECCcCcCCC-CCCHHHHHHHHHHHHhCceee
Confidence            46999999998 899999999999999999875

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=98.09  E-value=7.1e-07  Score=66.55  Aligned_cols=31  Identities=13%  Similarity=0.132  Sum_probs=28.0

Q ss_pred             EEEecccccCCCCCCHH-HHHHHHHhhhhC-cee
Q 030311          144 ILELPAGMLDDDKGDFV-GTAVREVSFILL-LDF  175 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~-~aA~REL~EETG-~~i  175 (179)
                      +|++|+|.++. +|++. +||.||+.|||| +.+
T Consensus        50 ~w~~PgG~~e~-gE~~~~~a~~REl~EE~g~l~~   82 (155)
T 1x51_A           50 LWEFPSVTWEP-SEQLQRKALLQELQRWAGPLPA   82 (155)
T ss_dssp             CEECCEEECCS-SHHHHHHHHHHHHHHHSCCCCS
T ss_pred             eecCCccccCC-CCCHHHHHHHHHHHHHhCCcce
Confidence            68999999998 88996 999999999999 654

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=98.08  E-value=1.3e-06  Score=71.76  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=28.9

Q ss_pred             EEEecccccCC-CCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDD-DKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~-~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|.+|. .+|++++||+|||.||||+.+.
T Consensus        52 ~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~   85 (240)
T 3gz5_A           52 LWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPP   85 (240)
T ss_dssp             CEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCS
T ss_pred             CEECCccccCCCCCcCHHHHHHHHHHHHHCCCCC
Confidence            36999999994 2689999999999999999864

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=97.96  E-value=1.5e-06  Score=71.94  Aligned_cols=32  Identities=16%  Similarity=0.128  Sum_probs=28.2

Q ss_pred             EEEe-cccccCCCCCC--H----HHHHHHHHhhhhCceee
Q 030311          144 ILEL-PAGMLDDDKGD--F----VGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lEl-PAG~lD~~~e~--p----~~aA~REL~EETG~~i~  176 (179)
                      .|++ |+|.++. +|+  |    ++||+||+.||||+.+.
T Consensus        98 ~w~~gPGGhVE~-GEs~~p~EtleeAa~REl~EEtGl~v~  136 (211)
T 3e57_A           98 LYSLGIGGHVRE-GDGATPREAFLKGLEREVNEEVDVSLR  136 (211)
T ss_dssp             -CBSSEECCCBG-GGCSSHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             CcccccceEEeC-CCCCCchhhHHHHHHHHHHHHhCCeee
Confidence            4688 9999998 787  5    99999999999999875

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=97.66  E-value=4.5e-05  Score=66.42  Aligned_cols=32  Identities=22%  Similarity=0.094  Sum_probs=29.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      +||+|+|.+|. + ++++++.||+.||||+.+..
T Consensus       268 lWefPGG~ve~-g-t~~~al~REl~EE~Gl~v~~  299 (369)
T 3fsp_A          268 LWEFPSCETDG-A-DGKEKLEQMVGEQYGLQVEL  299 (369)
T ss_dssp             CEECCEEECSS-S-CTHHHHHHHHTTSSSCCEEE
T ss_pred             cccCCCcccCC-C-CcHHHHHHHHHHHhCCceee
Confidence            67999999998 7 99999999999999998764

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=97.48  E-value=0.0002  Score=60.08  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=27.0

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhC
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILL  172 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG  172 (179)
                      .|++|+|.+++ +|++++|.+|||.||.|
T Consensus        84 ~f~LPGGkle~-gE~~~eaL~REL~EELg  111 (208)
T 3bho_A           84 FFKLPGGELNP-GEDEVEGLKRLMTEILG  111 (208)
T ss_dssp             EEECSEEECCT-TCCHHHHHHHHHHHHHC
T ss_pred             cEECCCcccCC-CCCHHHHHHHHHHHHhC
Confidence            67999999998 89999999999999999

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=97.37  E-value=5.2e-05  Score=65.72  Aligned_cols=32  Identities=16%  Similarity=-0.013  Sum_probs=28.9

Q ss_pred             EE-EecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 IL-ELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~l-ElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .| ..|||.++. ||++.+||+||++||+|+.++
T Consensus       150 ~wd~svaG~i~~-GEs~~eaA~REl~EElGI~~~  182 (300)
T 3dup_A          150 KLDNMVAGGQPA-DLSLRQNLIKECAEEADLPEA  182 (300)
T ss_dssp             CEEESEEEECCT-TSCHHHHHHHHHHHHHCCCHH
T ss_pred             ccccccccCCCC-CCCHHHHHHHHHHHHhCCChh
Confidence            45 699999998 899999999999999999764

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=97.34  E-value=3.4e-05  Score=64.27  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             EEEecccccCCCCCC--------------------HHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGD--------------------FVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~--------------------p~~aA~REL~EETG~~i~  176 (179)
                      .|.+|+|.+|. +|+                    +..||+||+.||||+.+.
T Consensus        41 ~~~fPGG~vd~-~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~   92 (232)
T 3qsj_A           41 FVAFPGGAADP-SDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLA   92 (232)
T ss_dssp             CEECSEEECCH-HHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCS
T ss_pred             cEECCceeEec-CCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceec
Confidence            35899999997 554                    589999999999999764

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=97.28  E-value=7.3e-05  Score=61.62  Aligned_cols=32  Identities=13%  Similarity=-0.032  Sum_probs=27.0

Q ss_pred             EEEecc-cccCCCC------CCH---HHHHHHHHhhhhCceee
Q 030311          144 ILELPA-GMLDDDK------GDF---VGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPA-G~lD~~~------e~p---~~aA~REL~EETG~~i~  176 (179)
                      .|++|+ |.++. +      |++   .+||+|||+||||+.+.
T Consensus        88 ~W~~p~gG~v~~-Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~  129 (235)
T 2dho_A           88 CFTNTCCSHPLS-NPAELEESDALGVRRAAQRRLKAELGIPLE  129 (235)
T ss_dssp             CEESSEEECCBS-SHHHHCCGGGHHHHHHHHHHHHHHHCCCGG
T ss_pred             cEEeccCceecC-CCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence            579995 88997 6      674   99999999999999854

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=97.23  E-value=6.3e-05  Score=63.46  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=25.5

Q ss_pred             EEEecccccCCCCC-CHHHHHHHHHhhhhCc
Q 030311          144 ILELPAGMLDDDKG-DFVGTAVREVSFILLL  173 (179)
Q Consensus       144 ~lElPAG~lD~~~e-~p~~aA~REL~EETG~  173 (179)
                      .||+|+|++|. +| +++++..|||.||+|+
T Consensus        55 ~weFPGGkVe~-gE~t~e~aL~REl~EElg~   84 (214)
T 3kvh_A           55 LLGFPGGFVDR-RFWSLEDGLNRVLGLGLGC   84 (214)
T ss_dssp             CEECSEEEECT-TTCCHHHHHHHSCCSCC--
T ss_pred             EEeCCCccCCC-CCCCHHHHHHHHHHHhhCC
Confidence            56999999998 78 9999999999999996

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=97.17  E-value=8.3e-05  Score=61.89  Aligned_cols=32  Identities=13%  Similarity=-0.158  Sum_probs=27.1

Q ss_pred             EEEecc-cccCCCC------CCH---HHHHHHHHhhhhCceee
Q 030311          144 ILELPA-GMLDDDK------GDF---VGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPA-G~lD~~~------e~p---~~aA~REL~EETG~~i~  176 (179)
                      .|++|+ |.++. +      |++   .+||+|||+||||+.+.
T Consensus        99 ~W~~p~gG~v~~-G~~E~~~Et~~~~~eAA~REl~EElGi~~~  140 (246)
T 2pny_A           99 YFTDSCSSHPLY-NPAELEEKDAIGVRRAAQRRLQAELGIPGE  140 (246)
T ss_dssp             CBCCSEEECCBS-SHHHHCCGGGHHHHHHHHHHHHHHHCCCTT
T ss_pred             ceEeccCceecc-CCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence            468986 88886 6      787   89999999999999853

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=96.11  E-value=0.0021  Score=55.85  Aligned_cols=30  Identities=17%  Similarity=0.120  Sum_probs=24.4

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhh-Cceeee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFIL-LLDFLL  177 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EET-G~~i~~  177 (179)
                      |.+|+|+++. +  ...+|+||+.||| |+++++
T Consensus       204 W~LPG~~~~~-~--~~~~a~RE~~EEttGl~v~~  234 (321)
T 3rh7_A          204 LSLPNCTVEG-G--DPARTLAAYLEQLTGLNVTI  234 (321)
T ss_dssp             EBCCEEEESS-S--CHHHHHHHHHHHHHSSCEEE
T ss_pred             ccCCcccCCC-C--hhHHHHHHHHHHhcCCEEee
Confidence            7999887764 3  3358999999997 999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.52
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.52
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.37
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.36
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.3
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	98.8
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	98.76
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	98.75
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	98.75
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	98.75
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	98.74
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	98.72
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	98.71
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	98.71
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	98.64
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	98.64
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	98.62
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	98.62
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	98.61
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	98.56
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	98.49
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	98.28
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	98.28
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	98.27
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	98.26
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	98.21
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	97.98
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	97.82
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	97.7
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	93.45

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=5.2e-15  Score=119.88  Aligned_cols=79  Identities=20%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             cccCCceeEEEEEEEEEEEeCceeeEEEEEEEEEecCCC----------------ceeeecC-----CcEEEEecccccC
Q 030311           95 ILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETG----------------QKVRVPT-----GRVILELPAGMLD  153 (179)
Q Consensus        95 llsd~~~~Lr~i~iq~vd~fG~~~gFlk~~adv~~~~~G----------------~~~R~p~-----g~~~lElPAG~lD  153 (179)
                      .+.+|+++++.++++.....|...  -+++++++.++++                +|||+|+     +.++||+|||++|
T Consensus        23 ~vy~G~~~v~~~~~~~~~~dG~~s--~~~~rev~~~~~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id  100 (209)
T d1g0sa_          23 TLYRGFFSLDLYRFRHRLFNGQMS--HEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIE  100 (209)
T ss_dssp             EEEESSSEEEEEEEEEBCTTSCBC--CCEEEEEEECCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECC
T ss_pred             EEEcCeEEEEEEEEEEECCCCCcc--cEEEEEEEecCCEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecC
Confidence            456788889888875222223211  1234444433322                3599998     5589999999999


Q ss_pred             CCCCCHHHHHHHHHhhhhCceee
Q 030311          154 DDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       154 ~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      + +|+|++||+|||+|||||++.
T Consensus       101 ~-gE~p~~aA~REL~EEtG~~~~  122 (209)
T d1g0sa_         101 E-GESVEDVARREAIEEAGLIVK  122 (209)
T ss_dssp             T-TCCHHHHHHHHHHHHHCCCCC
T ss_pred             C-CcCHHHHHHHHHHhhhccccc
Confidence            8 899999999999999999863

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=6.5e-15  Score=117.17  Aligned_cols=78  Identities=19%  Similarity=0.237  Sum_probs=59.5

Q ss_pred             ccccCCceeEEEEEEEEEEEeCceeeEEEEEEEEEecCCC----------------ceeeecC------CcEEEEecccc
Q 030311           94 GILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETG----------------QKVRVPT------GRVILELPAGM  151 (179)
Q Consensus        94 ~llsd~~~~Lr~i~iq~vd~fG~~~gFlk~~adv~~~~~G----------------~~~R~p~------g~~~lElPAG~  151 (179)
                      .++++|||+|+++++......|..   ...+++++.++++                +|||+|+      +.+++|+|||+
T Consensus         9 ~~~~~g~~~~~~~~~~~~~~dG~~---~~~~rev~~~~~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~   85 (189)
T d1viua_           9 KILSDNYFTLHNITYDLTRKDGEV---IRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGL   85 (189)
T ss_dssp             EEEECSSSEEEEEEEEECCSSSCC---EEEEEEEEECCCEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEE
T ss_pred             EEEEcCcEEEEEEEEEEECCCCCE---EEEEEEEEecCCEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEe
Confidence            357899999999998544444443   3445565555443                3599998      56899999999


Q ss_pred             cCCCCCCHHHHHHHHHhhhhCceee
Q 030311          152 LDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       152 lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      +|+  |+|++||+|||+|||||.+.
T Consensus        86 ~d~--e~p~~aA~REL~EEtG~~~~  108 (189)
T d1viua_          86 LDN--DEPEVCIRKEAIEETGYEVG  108 (189)
T ss_dssp             CTT--SCHHHHHHHHHHHHHSCCCC
T ss_pred             cCC--CCHHHHHHHHHHHhhCCcce
Confidence            996  57999999999999999864

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=4.2e-13  Score=107.66  Aligned_cols=43  Identities=35%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       134 ~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ++||+|++.++||+|||++|..||++++||+|||+|||||++.
T Consensus        56 rq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~   98 (202)
T d1mqea_          56 YQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQAS   98 (202)
T ss_dssp             EEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEE
T ss_pred             EecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccc
Confidence            3599999999999999999932899999999999999999874

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.8e-13  Score=104.97  Aligned_cols=42  Identities=19%  Similarity=0.139  Sum_probs=39.5

Q ss_pred             ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       134 ~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ++||+|++.++||+|||.+|+ +|+|++||+|||+|||||++.
T Consensus        65 rq~R~~~~~~~~elP~G~ie~-gE~p~~aA~REl~EEtG~~~~  106 (186)
T d1vhza_          65 REYAVGTESYELGFSKGLIDP-GESVYEAANRELKEEVGFGAN  106 (186)
T ss_dssp             EEEETTTTEEEEECEEEECCT-TCCHHHHHHHHHHHHHSEEEE
T ss_pred             EeeecCCCceEeecccccCCC-CcCHHHHHHHHHHHHhccccc
Confidence            469999999999999999998 899999999999999999874

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=8.7e-13  Score=101.55  Aligned_cols=43  Identities=30%  Similarity=0.345  Sum_probs=39.9

Q ss_pred             ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       134 ~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ++||+|++++.||+|||.+|. +|+|++||+||++|||||.+.+
T Consensus        41 ~q~R~~~~~~~~elP~G~ve~-gE~~~~aA~REl~EEtG~~~~~   83 (158)
T d1v8ya_          41 RQMRPAVGLAPLEIPAGLIEP-GEDPLEAARRELAEQTGLSGDL   83 (158)
T ss_dssp             ECCBTTTTBCCBBCSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred             EeeecCCCCceEecchhhccc-cCCHHHHHHHHHHhhcCCccee
Confidence            459999999999999999998 8999999999999999998764

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.80  E-value=5e-09  Score=78.07  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||.||+.||||+.+..
T Consensus        37 ~w~~PGG~ve~-gEs~~~aa~RE~~EEtGl~v~~   69 (155)
T d2b06a1          37 GYAFPGGHVEN-DEAFAESVIREIYEETGLTIQN   69 (155)
T ss_dssp             EEECCCCBCCT-TSCHHHHHHHHHHHHHSEEEES
T ss_pred             cEECceeEEcC-CCCHHHHHHHHHHHhcCeeEee
Confidence            57999999998 8999999999999999999864

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=2e-09  Score=77.93  Aligned_cols=33  Identities=21%  Similarity=0.115  Sum_probs=30.1

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+++..
T Consensus        25 ~w~~PgG~ve~-gEt~~~aa~RE~~EEtGi~~~~   57 (126)
T d1vcda1          25 FWVFPKGHPEP-GESLEEAAVREVWEETGVRAEV   57 (126)
T ss_dssp             CEECCEECCCT-TCCHHHHHHHHHHHHHCCEEEE
T ss_pred             CEECCccccCC-CCCHHHHHHHHHHHHcCCeeEE
Confidence            36999999998 8999999999999999998763

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.75  E-value=4.9e-09  Score=75.76  Aligned_cols=32  Identities=13%  Similarity=0.047  Sum_probs=29.9

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      |.+|+|++|. +|++.+||+||+.||||+++..
T Consensus        25 w~lPgG~ie~-gE~~~~aa~RE~~EEtGl~~~~   56 (152)
T d1k2ea_          25 YIYPGGHVEH-NETPIEAVKREFEEETGIVVEP   56 (152)
T ss_dssp             EECSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred             EECCeeEEeC-CccHHHHHHHHHHHHHCCceee
Confidence            5899999998 8999999999999999999864

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-09  Score=77.84  Aligned_cols=33  Identities=24%  Similarity=0.131  Sum_probs=30.0

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++++||+||+.||||+.+..
T Consensus        38 ~W~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~~   70 (135)
T d2fvva1          38 RWIVPGGGMEP-EEEPSVAAVREVCEEAGVKGTL   70 (135)
T ss_dssp             SEECSEEECCT-TCCHHHHHHHHHHHHHCEEEEE
T ss_pred             cEECCccccCC-CCCHHHHHHHHHHHHhCCccee
Confidence            35899999998 8999999999999999998764

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.75  E-value=6.7e-09  Score=75.37  Aligned_cols=34  Identities=29%  Similarity=0.315  Sum_probs=31.2

Q ss_pred             EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      ..|++|+|.+|. ||++.+||+||+.||||+.+..
T Consensus        28 ~~w~~PgG~ve~-gEt~~~aa~RE~~EEtGl~~~~   61 (146)
T d2b0va1          28 IKLNQPAGHLEP-GESIIQACSREVLEETGHSFLP   61 (146)
T ss_dssp             CEEECSEEECCT-TSCHHHHHHHHHHHHHSEEEEE
T ss_pred             CEEECCeeeECC-CCCHHHHHHHHHHHhheeeccc
Confidence            468999999998 8999999999999999998764

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.74  E-value=2.2e-09  Score=79.13  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. ||++.+||+||+.||||+.+..
T Consensus        43 ~W~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~~   75 (158)
T d1sjya_          43 LWHIPSGAVED-GENPQDAAVREACEETGLRVRP   75 (158)
T ss_dssp             CEECSEEECCT-TSCHHHHHHHHHHHHHSCCEEE
T ss_pred             cEECCceecCC-CCCHHHHHHHHHHHHhCcccee
Confidence            57999999998 8999999999999999998763

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=3.1e-09  Score=76.46  Aligned_cols=33  Identities=21%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||.||+.||||+.++.
T Consensus        32 ~W~~PgG~ve~-gEs~~~a~~RE~~EE~gl~~~~   64 (129)
T d1puna_          32 KLEFPGGKIEM-GETPEQAVVRELQEEVGITPQH   64 (129)
T ss_dssp             CCBCSCCSCTT-TSCTTHHHHHHHHHTTCSCCCC
T ss_pred             cEECCcceecC-CCchhHHHHHHHHHHhCCcccc
Confidence            67999999998 8999999999999999998763

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.4e-09  Score=78.52  Aligned_cols=38  Identities=18%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             eecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       137 R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      +.+.|  .|++|+|.+|. ||++++||+||+.||||+.+..
T Consensus        23 ~~~~g--~w~lpGG~ve~-GEt~~~aa~REl~EEtG~~~~~   60 (131)
T d1vk6a2          23 RHRNG--VHTVLAGFVEV-GETLEQAVAREVMEESGIKVKN   60 (131)
T ss_dssp             TTCSS--CCBCEEEECCT-TCCHHHHHHHHHHHHHCCEEEE
T ss_pred             cCCCC--CEecccCCCcC-CCcHHHHHHHHHHHHhCCcccc
Confidence            34444  46999999998 9999999999999999998763

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.71  E-value=3.3e-09  Score=77.28  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=30.0

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus        41 ~w~lPgG~ie~-gEs~~~aa~RE~~EEtGl~~~~   73 (147)
T d2azwa1          41 AYFLPGGEIEG-TETKEEAIHREVLEELGISVEI   73 (147)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred             eEECcEeEeCC-CCCHHHHHHHHHHhhhceeeee
Confidence            35899999998 8999999999999999998764

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.64  E-value=4.5e-09  Score=78.01  Aligned_cols=32  Identities=28%  Similarity=0.230  Sum_probs=29.5

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|.+|+|.+|. +|++.+||+||+.||||+++.
T Consensus        28 ~W~lPgG~ie~-gEs~~~aa~RE~~EEtGi~~~   59 (151)
T d2a6ta2          28 GWGFPKGKIDK-DESDVDCAIREVYEETGFDCS   59 (151)
T ss_dssp             CCBCSEEECCT-TCCHHHHHHHHHHHHHCCCCT
T ss_pred             CEECCcccccC-CCCHHHHHHHHHHHHhCCCce
Confidence            46999999998 899999999999999999874

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.5e-08  Score=75.90  Aligned_cols=32  Identities=16%  Similarity=-0.053  Sum_probs=29.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|.+|+|.++. +|++.+||+||+.||||+.+.
T Consensus        31 ~W~lPGG~ve~-gEt~~~aa~RE~~EEtGl~~~   62 (156)
T d1irya_          31 RWNGFGGKVQE-GETIEDGARRELQEESGLTVD   62 (156)
T ss_dssp             CEECBCCBCCT-TCCHHHHHHHHHHHHHSCCBS
T ss_pred             EEECcEeEecC-CCCHHHHHHHHHHHHHCCccc
Confidence            46999999998 899999999999999999875

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=98.62  E-value=7.2e-09  Score=78.26  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|++|+|++|. +|++++||+||+.||||+++.
T Consensus        39 ~W~~PgG~ve~-gEt~~~Aa~REl~EEtGl~~~   70 (165)
T d1jkna_          39 AWQMPQGGIDE-GEDPRNAAIRELREETGVTSA   70 (165)
T ss_dssp             CEECCEECCCT-TCCHHHHHHHHHHHHTCCCSE
T ss_pred             cccCccceEcC-CCChhHHHHHHHHHhhccccc
Confidence            46999999998 899999999999999999875

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.62  E-value=6.9e-09  Score=74.16  Aligned_cols=32  Identities=22%  Similarity=0.093  Sum_probs=29.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|.+|+|.+|. +|++.+||+||+.||||+++.
T Consensus        30 ~W~~PgG~ie~-gE~~~~aa~RE~~EEtGl~~~   61 (137)
T d1ktga_          30 HWTPPKGHVDP-GEDEWQAAIRETKEEANITKE   61 (137)
T ss_dssp             CEESSEEECCT-TCCHHHHHHHHHHHHHCCCGG
T ss_pred             cEeCccccccc-CCCHHHHHHHHHHHHhCCcce
Confidence            45899999998 899999999999999999864

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=7.3e-09  Score=76.79  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=29.8

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      |.+|+|.++. +|++.+||+||+.||||+.+++
T Consensus        46 W~lPGG~ve~-gEt~~~aa~REl~EEtGl~~~~   77 (160)
T d1ryaa_          46 WFVPGGRVQK-DETLEAAFERLTMAELGLRLPI   77 (160)
T ss_dssp             EECCEEECCT-TCCHHHHHHHHHHHHHSSCCCG
T ss_pred             EecccccccC-CCcHHHHHHHHHHHHhCceEee
Confidence            5899999998 8999999999999999998764

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.1e-08  Score=73.79  Aligned_cols=32  Identities=19%  Similarity=0.091  Sum_probs=29.3

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|.+|+|.+|. +|++.+||+||+.||||+.+.
T Consensus        42 ~W~lPgG~ie~-gEt~~~aa~REl~EEtG~~~~   73 (153)
T d1xsba_          42 HWTPPKGHVEP-GEDDLETALRATQEEAGIEAG   73 (153)
T ss_dssp             CEECCEEECCS-SSCHHHHHHHHHHHTTSCCTT
T ss_pred             cEECCeeecCC-CCCHHHHHHHHHHHHhCCccc
Confidence            47999999998 899999999999999998753

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.49  E-value=2.3e-08  Score=75.08  Aligned_cols=31  Identities=16%  Similarity=0.175  Sum_probs=28.6

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |.+|+|.+|. +|++++||+||+.||||+.+.
T Consensus        41 W~lPGG~ie~-~Es~~~aa~REl~EEtGl~~~   71 (147)
T d2fb1a2          41 WSLMGGFVQK-DESVDDAAKRVLAELTGLENV   71 (147)
T ss_dssp             EECEEEECCT-TSCHHHHHHHHHHHHHCCCSC
T ss_pred             EeCcEeeecC-CCCHHHHHHHHHHHHhCCccc
Confidence            5899999998 899999999999999998754

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.8e-07  Score=70.30  Aligned_cols=31  Identities=19%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             EEEec-ccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          144 ILELP-AGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       144 ~lElP-AG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      .|++| +|.+|. +|++++||+||+.||||+++
T Consensus        59 ~w~~~~GG~ie~-gEs~~~aa~REl~EE~Gi~~   90 (161)
T d2fkba1          59 MLDATAGGVVQA-DEQLLESARREAEEELGIAG   90 (161)
T ss_dssp             CEESSBCCBCBT-TCCHHHHHHHHHHHHHCCBS
T ss_pred             cccccccccccc-cCcHHHHHHHHHHHHhCCcc
Confidence            45887 799998 89999999999999999975

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.28  E-value=1.5e-07  Score=73.62  Aligned_cols=32  Identities=28%  Similarity=0.304  Sum_probs=28.5

Q ss_pred             EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      .|.+|+|++|. +|++.+||.||+.||||+...
T Consensus        62 ~~~fPGG~~e~-~E~~~~aAlRE~~EE~Gl~~~   93 (187)
T d1nqza_          62 QIAFPGGSLDA-GETPTQAALREAQEEVALDPA   93 (187)
T ss_dssp             CEECSEEECCT-TCCHHHHHHHHHHHHHCCCGG
T ss_pred             eEeCCcccccc-CCchhHHHHHHHHHhhccccc
Confidence            34889999998 899999999999999999653

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.9e-07  Score=70.27  Aligned_cols=30  Identities=10%  Similarity=0.069  Sum_probs=27.5

Q ss_pred             EecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          146 ELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       146 ElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      ..|+|.+|. ||++.+||+||+.||||+++.
T Consensus        34 ~~pgG~ve~-gEt~~eaa~RE~~EE~Gi~~~   63 (153)
T d1hzta_          34 NSVCGHPQL-GESNEDAVIRRCRYELGVEIT   63 (153)
T ss_dssp             ESEEECCCT-TCCHHHHHHHHHHHHHCCCBS
T ss_pred             cccCceeec-CCcHHHHHHHHHHHHcCceee
Confidence            459999998 899999999999999999864

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.26  E-value=1.9e-07  Score=73.66  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=28.7

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |.+|+|.+|. +|++.+||.||+.||||+.+.
T Consensus        70 W~lPGG~ve~-gEs~~eaa~REl~EEtGl~~~  100 (202)
T d2fmla2          70 WALPGGFVNR-NESTEDSVLRETKEETGVVIS  100 (202)
T ss_dssp             EECCEEECCT-TSCHHHHHHHHHHHHHCCCCC
T ss_pred             EECCEEeecC-CCCHHHHhhhhhHhhcCeeee
Confidence            5899999998 899999999999999999764

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=98.21  E-value=1.9e-07  Score=70.04  Aligned_cols=33  Identities=15%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             EEEec-ccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          144 ILELP-AGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       144 ~lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      .|.+| +|+++. +|++.+||.||++||||+.+..
T Consensus        57 ~w~~~~GG~ve~-gEs~~eaa~REl~EE~Gl~~~~   90 (162)
T d2o5fa1          57 ALDVSVGGAVQS-GETYEEAFRREAREELNVEIDA   90 (162)
T ss_dssp             SBCCSEEEECBT-TCCHHHHHHHHHHHHHCCCGGG
T ss_pred             ccccccCCcccC-CCChhhhhhhhhhheeCcceee
Confidence            34676 899998 8999999999999999998753

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.4e-06  Score=72.94  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311          145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~  176 (179)
                      |.||+|++|. +|++.+||+|||.||||+.+.
T Consensus       152 WaLPGG~Vd~-GEs~~~Aa~REl~EETGl~~~  182 (292)
T d1q33a_         152 WAIPGGMVDP-GEKISATLKREFGEEALNSLQ  182 (292)
T ss_dssp             EECCCEECCT-TCCHHHHHHHHHHHHHSCGGG
T ss_pred             EeCCcccCCC-CCCHHHHHHHHHHHHhCcccc
Confidence            5899999998 899999999999999999765

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.82  E-value=3.5e-06  Score=67.12  Aligned_cols=31  Identities=23%  Similarity=0.258  Sum_probs=27.3

Q ss_pred             EEecccccCCCCCC-HHHHHHHHHhhhhCceee
Q 030311          145 LELPAGMLDDDKGD-FVGTAVREVSFILLLDFL  176 (179)
Q Consensus       145 lElPAG~lD~~~e~-p~~aA~REL~EETG~~i~  176 (179)
                      |++|+|.+|. +|+ .+++|.||+.||||+.+.
T Consensus        55 ~~~pgg~~~~-~e~~~~~~~~re~~ee~g~~~~   86 (196)
T d1u20a1          55 LGFPGGFVDT-RDISLEEGLKRELEEELGPALA   86 (196)
T ss_dssp             EECSEEEECT-TTSCHHHHHHHHHHHHHCGGGG
T ss_pred             EECCccccCC-CCCcHHHHHHHHHHHHhCccce
Confidence            5999999998 786 578999999999999765

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.70  E-value=1.8e-05  Score=56.98  Aligned_cols=40  Identities=23%  Similarity=0.158  Sum_probs=27.2

Q ss_pred             eeecCCcE--EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311          136 VRVPTGRV--ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL  177 (179)
Q Consensus       136 ~R~p~g~~--~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~  177 (179)
                      -|..-|.+  +||+|.|.+|+ +++ .+++.||+.||+|+.+..
T Consensus        22 kR~~~~~~~GlWefP~g~~e~-~~~-~e~l~rel~ee~gi~v~~   63 (127)
T d1rrqa2          22 KRDSTGLLANLWEFPSCETDG-ADG-KEKLEQMVGEQYGLQVEL   63 (127)
T ss_dssp             ECCSSSTTTTCEECCEEECTT-TCC-HHHHHHTTC----CEEEE
T ss_pred             ECCCCCCCCCceecccccccC-CCC-HHHHHHHhhhhcceEEEe
Confidence            44444443  78999999996 445 788999999999998875

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.011  Score=41.79  Aligned_cols=39  Identities=13%  Similarity=0.101  Sum_probs=27.8

Q ss_pred             eeecCCcE--EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311          136 VRVPTGRV--ILELPAGMLDDDKGDFVGTAVREVSFILLLDF  175 (179)
Q Consensus       136 ~R~p~g~~--~lElPAG~lD~~~e~p~~aA~REL~EETG~~i  175 (179)
                      -|.+-|-+  +||+|.|.+|. +++...+|.+|..+|.++.+
T Consensus        33 kR~~~g~l~GlWefP~~~~~~-~e~~~~~~~~~~~~e~~~~~   73 (142)
T d1x51a1          33 QRPNSGLLAGLWEFPSVTWEP-SEQLQRKALLQELQRWAGPL   73 (142)
T ss_dssp             ECCCCSTTCSCEECCEEECCS-SHHHHHHHHHHHHHHHSCCC
T ss_pred             ECCCCCCCCcceeeeEeeccC-CcchhHHHHHHHHHHhccCc
Confidence            45455544  89999999997 78888878776666555443