Citrus Sinensis ID: 030333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLKVTRSATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEEL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEccccccccHHccHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccccccHHHEccccccccccccccEEEEccccccccccccEEcccccccEEHHccHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHccc
Coil and Loop (DISEMBL)
mslpnddnmsahsqlSSHFFEDLLDSIIVDVASECHRvarlgldrnfeEEEEELRLSAQARARVAdssnngetnskYVVDIFGQTHPAVANEIFECmncgrsivagrfaphlekcmgkgrkarLKVTRSATAAqnrytrgspgssyssysnstgmnrlsngassgvageeysngsfeel
Flexible Loop (DISEMBL)
mslpnddnMSAHSQLSSHFFEDLLDSIIVDVASECHRVArlgldrnfeeEEEELRLSAQARarvadssnngetnsKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCmgkgrkarlkvtrsataaqnrytrgspgssySSYSNSTGMNRLSNgassgvageeysngsfeel
Low Complexity Region (SEG)
MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFeeeeeeLRLSAQARARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLKVTRSATAAQNrytrgspgssyssysnstgMNRLSNGASSGVAGEEYSNGSFEEL
Disordered region (IsUnstruct)
*****************HFFEDLLDSIIVDVASECHRVARLGLD*******************************KYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMG**************************************************************
Disordered Region (DISOPRED)
***************SSHFFEDLLDSIIVDVASECHRVARLGLDRNF************************************QTHPAVANEIFECMNCGRSIVAGRFAPHLEK*****************************************************************
Disordered Region (DISEMBL)
***********HSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFE*********************NGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGK********************************NSTGMNRLSN*******************
Disordered Region (DISPRO)
********MSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNF*********************N*G*TNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLKVTR***************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLKVTRSATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
A1L209	367	Ataxin-7-like protein 3 O	no	no	0.653	0.318	0.318	9e-11
A2AWT3	347	Ataxin-7-like protein 3 O	yes	no	0.597	0.308	0.327	1e-08
Q14CW9	347	Ataxin-7-like protein 3 O	yes	no	0.597	0.308	0.327	1e-08
Q7PXG4	182	SAGA-associated factor 11	yes	no	0.513	0.505	0.317	2e-08
Q2LYX9	196	SAGA-associated factor 11	yes	no	0.653	0.596	0.335	2e-08
B4GZZ4	196	SAGA-associated factor 11	N/A	no	0.653	0.596	0.335	2e-08
B1PM81	220	SAGA-associated factor 11	N/A	no	0.553	0.45	0.336	3e-08
B4LDA6	189	SAGA-associated factor 11	N/A	no	0.575	0.544	0.324	5e-08
Q17CJ5	180	SAGA-associated factor 11	N/A	no	0.513	0.511	0.308	6e-08
B4KY72	211	SAGA-associated factor 11	N/A	no	0.564	0.478	0.319	9e-08

>sp|A1L209|AT7L3_DANRE Ataxin-7-like protein 3 OS=Danio rerio GN=atxn7l3 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 21/138 (15%)

Query: 1   MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLG---LDRNFEEEEEELRLS 57
           MSL   DN    + L+   + DL++   + +  E HR  + G   LD   +E  ++  + 
Sbjct: 6   MSLSGLDNTKLEA-LAHDVYSDLVEDACLGLCFEVHRAVKQGYFFLDETDQESMKDFEIV 64

Query: 58  AQARARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMG 117
            Q                   VDIFGQ +    N+   C NC RSI A RFAPHLEKC+G
Sbjct: 65  DQPG-----------------VDIFGQVYNQWKNKECVCPNCSRSIAASRFAPHLEKCLG 107

Query: 118 KGRKARLKVTRSATAAQN 135
            GR +     R   ++ N
Sbjct: 108 MGRNSSRIANRRIASSNN 125

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.
Danio rerio (taxid: 7955)

>sp|A2AWT3|AT7L3_MOUSE Ataxin-7-like protein 3 OS=Mus musculus GN=Atxn7l3 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 1   MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQA 60
           MSL   DN S    ++   + DL++   +    E HR  + G    F ++ +        
Sbjct: 6   MSLSGLDN-SKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGY--FFLDDTD-------- 54

Query: 61  RARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
                DS  + E   +  +DIFGQ      ++   C NC RSI A RFAPHLEKC+G GR
Sbjct: 55  ----PDSMKDFEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGR 110

Query: 121 KA 122
            +
Sbjct: 111 NS 112

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation. Within the complex, it is required to recruit USP22 and ENY2 into the SAGA complex.

Mus musculus (taxid: 10090)

>sp|Q14CW9|AT7L3_HUMAN Ataxin-7-like protein 3 OS=Homo sapiens GN=ATXN7L3 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 1   MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQA 60
           MSL   DN S    ++   + DL++   +    E HR  + G    F ++ +        
Sbjct: 6   MSLSGLDN-SKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGY--FFLDDTD-------- 54

Query: 61  RARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
                DS  + E   +  +DIFGQ      ++   C NC RSI A RFAPHLEKC+G GR
Sbjct: 55  ----PDSMKDFEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGR 110

Query: 121 KA 122
            +
Sbjct: 111 NS 112

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation. Within the complex, it is required to recruit USP22 and ENY2 into the SAGA complex.

Homo sapiens (taxid: 9606)

>sp|Q7PXG4|SGF11_ANOGA SAGA-associated factor 11 homolog OS=Anopheles gambiae GN=Sgf11 PE=3 SV=5

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 15/107 (14%)

Query: 14  QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGET 73
           + +++ +E L+D  I+ +A E H   + G     E E E+ +        + D  +    
Sbjct: 33  KAANYLYESLVDETILGIAYEVHHANKTGSGAAVEGEPEDSKPYT-----IVDQPD---- 83

Query: 74  NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
                 D+FG ++   A +   C NC R + A RFAPHLEKCMG GR
Sbjct: 84  -----TDVFGSSNTKKAIDC-HCPNCNRIVAASRFAPHLEKCMGMGR 124

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.

Anopheles gambiae (taxid: 7165)

>sp|Q2LYX9|SGF11_DROPS SAGA-associated factor 11 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sgf11 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 23/140 (16%)

Query: 14  QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGET 73
           + ++  +E LL+  +  +  E H + ++G     +   EE   SA    R+ D  N    
Sbjct: 38  EAANQLYESLLEDAVTGIFIEVHHLRKIGNLSALDGVAEE---SAH---RICDVPN---- 87

Query: 74  NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSATA 132
                +DIFG +    A +   C NC R + A RFAPHLEKCMG GR  +R+   R AT 
Sbjct: 88  -----LDIFGVSTAKKAIDC-TCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT- 140

Query: 133 AQNRYTRGSPGSSYSSYSNS 152
                  G+  SS SSY +S
Sbjct: 141 -----KEGTSASSNSSYVHS 155

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. Required to counteract heterochromatin silencing. Controls the development of neuronal connectivity in visual system by being required for accurate axon targeting in the optic lobe. Required for expression of ecdysone-induced genes such as br/broad.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GZZ4|SGF11_DROPE SAGA-associated factor 11 homolog OS=Drosophila persimilis GN=Sgf11 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 23/140 (16%)

Query: 14  QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGET 73
           + ++  +E LL+  +  +  E H + ++G     +   EE   SA    R+ D  N    
Sbjct: 38  EAANQLYESLLEDAVTGIFIEVHHLRKIGNLSALDGVAEE---SAH---RICDVPN---- 87

Query: 74  NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSATA 132
                +DIFG +    A +   C NC R + A RFAPHLEKCMG GR  +R+   R AT 
Sbjct: 88  -----LDIFGVSTAKKAIDC-TCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT- 140

Query: 133 AQNRYTRGSPGSSYSSYSNS 152
                  G+  SS SSY +S
Sbjct: 141 -----KEGTSASSNSSYVHS 155

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. Required to counteract heterochromatin silencing. Controls the development of neuronal connectivity in visual system by being required for accurate axon targeting in the optic lobe. Required for expression of ecdysone-induced genes such as br/broad.

Drosophila persimilis (taxid: 7234)

>sp|B1PM81|SGF11_MUSDO SAGA-associated factor 11 homolog OS=Musca domestica GN=Sgf11 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 26/125 (20%)

Query: 14  QLSSHFFEDLLDSIIVDVASECHRVARLG----LDRNFEEEEEELRLSAQARARVADSSN 69
           + +++ ++ LLD  +V V  E H + + G    +D   E+E E          R+ D  N
Sbjct: 59  EAANYLYQSLLDDAVVGVFLEIHHLRKTGNLTAMDGVNEDESE-------TSFRIVDMPN 111

Query: 70  NGETNSKYVVDIFGQTHPAVANEIFECM--NCGRSIVAGRFAPHLEKCMGKGR-KARLKV 126
                     DIFG    + A +  +C   NC R + A RFAPHLEKCMG GR  +R+  
Sbjct: 112 ---------FDIFGI---STAKKPMDCTCPNCDRPVSAARFAPHLEKCMGMGRISSRIAS 159

Query: 127 TRSAT 131
            R AT
Sbjct: 160 RRLAT 164

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.

Musca domestica (taxid: 7370)

>sp|B4LDA6|SGF11_DROVI SAGA-associated factor 11 homolog OS=Drosophila virilis GN=Sgf11 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 14/117 (11%)

Query: 16  SSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGETNS 75
           +++ F+ LLD ++  +  E H + + G     +   EE   +A++  R+ +  N      
Sbjct: 29  ANYLFQGLLDDVVAGIFIEIHHLRKTGNLTALDGVGEE---NAESAYRICEMPN------ 79

Query: 76  KYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
              +DIFG +      +   C NC R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct: 80  ---LDIFGISTAKKPMDC-TCPNCDRLVAATRFAPHLEKCMGMGRISSRIASRRLAT 132

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. Required to counteract heterochromatin silencing. Controls the development of neuronal connectivity in visual system by being required for accurate axon targeting in the optic lobe. Required for expression of ecdysone-induced genes such as br/broad.

Drosophila virilis (taxid: 7244)

>sp|Q17CJ5|SGF11_AEDAE SAGA-associated factor 11 homolog OS=Aedes aegypti GN=Sgf11 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 14  QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGET 73
           + +++  + L+D +I+ V  E H   + G     E + E+ +        + D    G +
Sbjct: 33  KAANYLLDSLVDEMILGVVFEVHHAYKTGSGAAIEGQPEDCK--PYTIVDLPDMDVFGSS 90

Query: 74  NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
           NSK  +D               C NC R + A RFAPHLEKCMG GR
Sbjct: 91  NSKKAIDC-------------SCPNCNRIVAASRFAPHLEKCMGMGR 124

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.

Aedes aegypti (taxid: 7159)

>sp|B4KY72|SGF11_DROMO SAGA-associated factor 11 homolog OS=Drosophila mojavensis GN=Sgf11 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 18/119 (15%)

Query: 16  SSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGETNS 75
           +++ F+ LLD ++  +  E H + + G     +   EE   +A++  R+ +  N      
Sbjct: 50  ANYLFQGLLDDVVAGIFIEIHHLRKTGNLTALDGVGEE---NAESAYRICEMPN------ 100

Query: 76  KYVVDIFGQTHPAVANEIFECM--NCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
              +DIFG +    A +  +C   +C R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct: 101 ---LDIFGIS---TAKKPMDCTCPHCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT 153

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. Required to counteract heterochromatin silencing. Controls the development of neuronal connectivity in visual system by being required for accurate axon targeting in the optic lobe. Required for expression of ecdysone-induced genes such as br/broad.

Drosophila mojavensis (taxid: 7230)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
255551198	193	conserved hypothetical protein [Ricinus	0.988	0.917	0.797	2e-76
449455011	178	PREDICTED: ataxin-7-like protein 3-like	0.988	0.994	0.775	4e-73
224059814	178	predicted protein [Populus trichocarpa]	0.983	0.988	0.802	4e-72
359478760	176	PREDICTED: ataxin-7-like protein 3-like	0.977	0.994	0.831	5e-71
224103915	170	predicted protein [Populus trichocarpa]	0.944	0.994	0.805	1e-65
255633314	181	unknown [Glycine max]	0.983	0.972	0.784	4e-65
363807630	173	uncharacterized protein LOC100802564 [Gl	0.905	0.936	0.802	6e-65
22327952	181	uncharacterized protein [Arabidopsis tha	0.960	0.950	0.699	2e-64
297793393	507	hypothetical protein ARALYDRAFT_332145 [	0.910	0.321	0.719	1e-61
8843778	517	unnamed protein product [Arabidopsis tha	0.988	0.342	0.664	7e-61

>gi|255551198|ref|XP_002516646.1| conserved hypothetical protein [Ricinus communis] gi|223544218|gb|EEF45741.1| conserved hypothetical protein [Ricinus communis]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 160/178 (89%), Gaps = 1/178 (0%)

Query: 1   MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQA 60
           MS+PN+DNMS H+QLSSHFF DLLDSIIVDVASECHR+ +LGLDRN EEEEEELRLS QA
Sbjct: 16  MSVPNEDNMSPHTQLSSHFFGDLLDSIIVDVASECHRIVKLGLDRNLEEEEEELRLSTQA 75

Query: 61  RARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
           R RVAD S +GETNSKYVVDIFGQ+HP VANEIF+CMNCGRSI+AGRFAPHLEKCMGKGR
Sbjct: 76  RVRVADPSISGETNSKYVVDIFGQSHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGKGR 135

Query: 121 KARLKVTRSATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEE 178
           KARLK TRS+TAAQNR++RGSP S+YS YSNS+  NRLSNG +  +AGEEYSNG+ +E
Sbjct: 136 KARLKATRSSTAAQNRHSRGSPVSTYSPYSNSSSANRLSNG-TPNLAGEEYSNGTLDE 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455011|ref|XP_004145247.1| PREDICTED: ataxin-7-like protein 3-like [Cucumis sativus] gi|449472868|ref|XP_004153719.1| PREDICTED: ataxin-7-like protein 3-like [Cucumis sativus] gi|449529992|ref|XP_004171981.1| PREDICTED: ataxin-7-like protein 3-like [Cucumis sativus]

 Score =  278 bits (712), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/178 (77%), Positives = 159/178 (89%), Gaps = 1/178 (0%)

Query: 1   MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQA 60
           MS+PN+DN S+ +QLSS+ F DLLDS+IVD+ASECHR+ARLGLDRN EEEEEELRLSAQA
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDIASECHRIARLGLDRNLEEEEEELRLSAQA 60

Query: 61  RARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
           R RVADSSN+ E N KYVVDIFGQTHP+VANEIF+CMNCGRSI+AGRFAPHLEKCMG+GR
Sbjct: 61  RVRVADSSNSSEANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEE 178
           KAR KVTRS+TAAQ+RY+RG+P S+YS Y NST  NRL NG SS +AGEEYSNG+ E+
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSS-LAGEEYSNGTSED 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059814|ref|XP_002299995.1| predicted protein [Populus trichocarpa] gi|222847253|gb|EEE84800.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (704), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 142/177 (80%), Positives = 151/177 (85%), Gaps = 1/177 (0%)

Query: 1   MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQA 60
           MS+PN+DNMS H QLSSHFF DLLDSIIVDVASECHRVARLGLDRN EEEEEELRLSAQA
Sbjct: 1   MSVPNEDNMSPHMQLSSHFFGDLLDSIIVDVASECHRVARLGLDRNLEEEEEELRLSAQA 60

Query: 61  RARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
           R  VAD SN+GETN KYVVDIFGQTHP VANE+F+CMNCGR IVAGRFAPHLEKCMGKGR
Sbjct: 61  RVTVADPSNSGETNGKYVVDIFGQTHPCVANEVFDCMNCGRPIVAGRFAPHLEKCMGKGR 120

Query: 121 KARLKVTRSATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFE 177
           KAR K TRS+TAAQNRY+RGSP S+ S  SNST  NRL NG  S    EEYSNG+ E
Sbjct: 121 KARAKATRSSTAAQNRYSRGSPVSANSPCSNSTSTNRLLNGTYSHTV-EEYSNGTCE 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478760|ref|XP_003632167.1| PREDICTED: ataxin-7-like protein 3-like [Vitis vinifera] gi|297745862|emb|CBI15918.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (695), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 148/178 (83%), Positives = 160/178 (89%), Gaps = 3/178 (1%)

Query: 1   MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQA 60
           MS PN+D MS  SQLSSHFF DLLDSIIVDVASECHR+ARLGLDRN EEEEEELRLSAQA
Sbjct: 1   MSAPNEDTMS--SQLSSHFFGDLLDSIIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 58

Query: 61  RARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
           R RVAD SN+GE NSKYVVDIFGQ+HPA+A+EIFECMNCGRSI+AGRFAPHLEKCMGKGR
Sbjct: 59  RVRVADPSNSGEANSKYVVDIFGQSHPAIASEIFECMNCGRSIMAGRFAPHLEKCMGKGR 118

Query: 121 KARLKVTRSATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEE 178
           KARLK TRS+TAAQNRY+RGSP SSYS YSNST  +RLSNG + GV GEEYSNG+ EE
Sbjct: 119 KARLKATRSSTAAQNRYSRGSPVSSYSPYSNSTSTSRLSNG-TPGVGGEEYSNGTLEE 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103915|ref|XP_002313242.1| predicted protein [Populus trichocarpa] gi|222849650|gb|EEE87197.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 151/170 (88%), Gaps = 1/170 (0%)

Query: 9   MSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSS 68
           MS H+QLSSHFF +LLDSIIVDVASECHR+ARLGLDRN EEEEEELRLSAQAR  VAD S
Sbjct: 1   MSPHTQLSSHFFGELLDSIIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVTVADPS 60

Query: 69  NNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLKVTR 128
           N+GETN KYVVDIFGQTHP+VANE+F+CMNCGR IVAGRFAPHLEKCMGKGRKAR+K TR
Sbjct: 61  NSGETNGKYVVDIFGQTHPSVANEVFDCMNCGRPIVAGRFAPHLEKCMGKGRKARVKATR 120

Query: 129 SATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEE 178
           S+TAAQNRY+RGSP S++SSYSNST  NRLSNG  +    EEYSNG+ EE
Sbjct: 121 SSTAAQNRYSRGSPVSAHSSYSNSTSTNRLSNGTYNHTV-EEYSNGTCEE 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633314|gb|ACU17014.1| unknown [Glycine max]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 142/181 (78%), Positives = 161/181 (88%), Gaps = 5/181 (2%)

Query: 1   MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQA 60
           MS+PN++N+S+HSQLSSHFF DLLDSIIVDVASECHRVARLGLD N EEE+EEL+LSAQA
Sbjct: 1   MSVPNEENLSSHSQLSSHFFLDLLDSIIVDVASECHRVARLGLDSNLEEEDEELKLSAQA 60

Query: 61  RARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
           R RVAD SN+ E N KYVVDIFGQTHP VANEIF+CMNCGRSI+AGRFAPHLEKCMGKGR
Sbjct: 61  RVRVADPSNSNEANGKYVVDIFGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGKGR 120

Query: 121 KARLKVTRSATAAQNRYTRG--SPGSSYSSYSN--STGMNRLSNGASSGVAGEEYSNGSF 176
           KARLKVTRS+TAAQNRY+RG  SPGS+YS YSN  +  MN+L+NG S+  AGEE+SNG+ 
Sbjct: 121 KARLKVTRSSTAAQNRYSRGSPSPGSTYSPYSNYSTNSMNQLANGTST-FAGEEHSNGTL 179

Query: 177 E 177
           E
Sbjct: 180 E 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807630|ref|NP_001241902.1| uncharacterized protein LOC100802564 [Glycine max] gi|255636637|gb|ACU18656.1| unknown [Glycine max]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 134/167 (80%), Positives = 147/167 (88%), Gaps = 5/167 (2%)

Query: 15  LSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGETN 74
           LSSHFF DLLDSIIVDVASECHRVARLGLD N EEE+EEL+LSAQAR RVAD SN+ E N
Sbjct: 7   LSSHFFLDLLDSIIVDVASECHRVARLGLDSNLEEEDEELKLSAQARVRVADPSNSNEAN 66

Query: 75  SKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLKVTRSATAAQ 134
            KYVVDIFGQTHP VANEIF+CMNCGRSI+AGRFAPHLEKCMGKGRKARLKVTRS+TAAQ
Sbjct: 67  GKYVVDIFGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGKGRKARLKVTRSSTAAQ 126

Query: 135 NRYTRG--SPGSSYSSYSN--STGMNRLSNGASSGVAGEEYSNGSFE 177
           NRY+RG  SPGS+YS YSN  +  MNRL+NG S+  AGEE+SNG+ E
Sbjct: 127 NRYSRGSPSPGSTYSPYSNYSTNSMNRLANGTST-FAGEEHSNGTLE 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327952|ref|NP_200665.2| uncharacterized protein [Arabidopsis thaliana] gi|14532482|gb|AAK63969.1| AT5g58570/mzn1_20 [Arabidopsis thaliana] gi|18655363|gb|AAL76137.1| AT5g58570/mzn1_20 [Arabidopsis thaliana] gi|332009688|gb|AED97071.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/173 (69%), Positives = 139/173 (80%), Gaps = 1/173 (0%)

Query: 6   DDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVA 65
           +DN S+H+QLSS  F DL+DS+I DVASECHRVARLGLDR+ +  EEELRLS +ARA++A
Sbjct: 5   EDNKSSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKIA 64

Query: 66  DSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLK 125
           D SNN ETN+KYVVDIFGQTHP VA+E+F CMNCGR IVAGRFAPHLEKCMGKGRKAR K
Sbjct: 65  DPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARAK 124

Query: 126 VTRSATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEE 178
            TRS TAAQNR  R SP   YS Y NS   N+L++G S GVAGE+ SN +  E
Sbjct: 125 TTRSTTAAQNRNARRSPNPRYSPYPNSASENQLASG-SPGVAGEDCSNFTVRE 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793393|ref|XP_002864581.1| hypothetical protein ARALYDRAFT_332145 [Arabidopsis lyrata subsp. lyrata] gi|297310416|gb|EFH40840.1| hypothetical protein ARALYDRAFT_332145 [Arabidopsis lyrata subsp. lyrata]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/164 (71%), Positives = 131/164 (79%), Gaps = 1/164 (0%)

Query: 15  LSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGETN 74
           LSS  F DL+DS+I DVASECHRVARLGLDR+ E  EEELRLS +ARA+VAD SNN ETN
Sbjct: 340 LSSQVFLDLVDSVIADVASECHRVARLGLDRDLEVVEEELRLSVEARAKVADPSNNLETN 399

Query: 75  SKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLKVTRSATAAQ 134
           +K+VVDIFGQTHP VA E+F CMNCGR IVAGRFAPHLEKCMGKGRKAR K TRS TAAQ
Sbjct: 400 TKFVVDIFGQTHPPVATEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARAKTTRSTTAAQ 459

Query: 135 NRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEE 178
           NR  R SP   YS Y NS   N+L++G S GVAGE+ SNG+  E
Sbjct: 460 NRNARRSPNPRYSPYPNSASENQLASG-SPGVAGEDCSNGTVRE 502

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8843778|dbj|BAA97326.1| unnamed protein product [Arabidopsis thaliana]

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 137/179 (76%), Gaps = 2/179 (1%)

Query: 1   MSLPNDDNMSAH-SQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQ 59
           +SLP    ++     LSS  F DL+DS+I DVASECHRVARLGLDR+ +  EEELRLS +
Sbjct: 335 LSLPPPFTVATRLYSLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVE 394

Query: 60  ARARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKG 119
           ARA++AD SNN ETN+KYVVDIFGQTHP VA+E+F CMNCGR IVAGRFAPHLEKCMGKG
Sbjct: 395 ARAKIADPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKG 454

Query: 120 RKARLKVTRSATAAQNRYTRGSPGSSYSSYSNSTGMNRLSNGASSGVAGEEYSNGSFEE 178
           RKAR K TRS TAAQNR  R SP   YS Y NS   N+L++G S GVAGE+ SN +  E
Sbjct: 455 RKARAKTTRSTTAAQNRNARRSPNPRYSPYPNSASENQLASG-SPGVAGEDCSNFTVRE 512

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:505006700	181	AT5G58575 "AT5G58575" [Arabido	0.960	0.950	0.630	2.7e-52
ZFIN|ZDB-GENE-030616-253	367	atxn7l3 "ataxin 7-like 3" [Dan	0.670	0.326	0.325	9.8e-10
UNIPROTKB|B4LDA6	189	Sgf11 "SAGA-associated factor	0.575	0.544	0.316	2.2e-09
UNIPROTKB|B4GZZ4	196	Sgf11 "SAGA-associated factor	0.569	0.520	0.327	3.6e-09
UNIPROTKB|Q2LYX9	196	Sgf11 "SAGA-associated factor	0.569	0.520	0.327	3.6e-09
UNIPROTKB|B4KY72	211	Sgf11 "SAGA-associated factor	0.575	0.488	0.307	4.7e-09
UNIPROTKB|B3NHQ1	196	Sgf11 "SAGA-associated factor	0.569	0.520	0.319	1.2e-08
UNIPROTKB|B4J1U4	211	Sgf11-1 "SAGA-associated facto	0.586	0.497	0.302	1.3e-08
UNIPROTKB|B4J1U5	211	Sgf11-2 "SAGA-associated facto	0.586	0.497	0.302	1.3e-08
UNIPROTKB|B4PJ01	196	Sgf11 "SAGA-associated factor	0.569	0.520	0.319	1.6e-08

TAIR|locus:505006700 AT5G58575 "AT5G58575" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 109/173 (63%), Positives = 126/173 (72%)

Query:     6 DDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVA 65
             +DN S+H+QLSS  F DL+DS+I DVASECHRVARLGLDR+       LRLS +ARA++A
Sbjct:     5 EDNKSSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKIA 64

Query:    66 DSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKARLK 125
             D SNN ETN+KYVVDIFGQTHP VA+E+F CMNCGR IVAGRFAPHLEKCMGKGRKAR K
Sbjct:    65 DPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARAK 124

Query:   126 VTRSATAAQNXXXXXXXXXXXXXXXXXXXMNRLSNGASSGVAGEEYSNGSFEE 178
              TRS TAAQN                    N+L++G S GVAGE+ SN +  E
Sbjct:   125 TTRSTTAAQNRNARRSPNPRYSPYPNSASENQLASG-SPGVAGEDCSNFTVRE 176

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030616-253 atxn7l3 "ataxin 7-like 3" [Danio rerio (taxid:7955)]

 Score = 147 (56.8 bits), Expect = 9.8e-10, P = 9.8e-10
 Identities = 44/135 (32%), Positives = 62/135 (45%)

Query:     1 MSLPNDDNMSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQA 60
             MSL   DN    + L+   + DL++   + +  E HR  + G           L  + Q 
Sbjct:     6 MSLSGLDNTKLEA-LAHDVYSDLVEDACLGLCFEVHRAVKQGY--------FFLDETDQ- 55

Query:    61 RARVADSSNNGETNSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR 120
                  +S  + E   +  VDIFGQ +    N+   C NC RSI A RFAPHLEKC+G GR
Sbjct:    56 -----ESMKDFEIVDQPGVDIFGQVYNQWKNKECVCPNCSRSIAASRFAPHLEKCLGMGR 110

Query:   121 KARLKVTRSATAAQN 135
              +     R   ++ N
Sbjct:   111 NSSRIANRRIASSNN 125

GO:0000124 "SAGA complex" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|B4LDA6 Sgf11 "SAGA-associated factor 11 homolog" [Drosophila virilis (taxid:7244)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 37/117 (31%), Positives = 57/117 (48%)

Query:    16 SSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVADSSNNGETNS 75
             +++ F+ LLD ++  +  E H + + G   N          +A++  R+ +  N      
Sbjct:    29 ANYLFQGLLDDVVAGIFIEIHHLRKTG---NLTALDGVGEENAESAYRICEMPN------ 79

Query:    76 KYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
                +DIFG +      +   C NC R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct:    80 ---LDIFGISTAKKPMDC-TCPNCDRLVAATRFAPHLEKCMGMGRISSRIASRRLAT 132

GO:0000124 "SAGA complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|B4GZZ4 Sgf11 "SAGA-associated factor 11 homolog" [Drosophila persimilis (taxid:7234)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 39/119 (32%), Positives = 56/119 (47%)

Query:    14 QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVADSSNNGET 73
             + ++  +E LL+  +  +  E H + ++G   N          SA    R+ D  N    
Sbjct:    38 EAANQLYESLLEDAVTGIFIEVHHLRKIG---NLSALDGVAEESAH---RICDVPN---- 87

Query:    74 NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
                  +DIFG +    A +   C NC R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct:    88 -----LDIFGVSTAKKAIDC-TCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT 140

GO:0000124 "SAGA complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|Q2LYX9 Sgf11 "SAGA-associated factor 11 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 39/119 (32%), Positives = 56/119 (47%)

Query:    14 QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVADSSNNGET 73
             + ++  +E LL+  +  +  E H + ++G   N          SA    R+ D  N    
Sbjct:    38 EAANQLYESLLEDAVTGIFIEVHHLRKIG---NLSALDGVAEESAH---RICDVPN---- 87

Query:    74 NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
                  +DIFG +    A +   C NC R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct:    88 -----LDIFGVSTAKKAIDC-TCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT 140

GO:0000124 "SAGA complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|B4KY72 Sgf11 "SAGA-associated factor 11 homolog" [Drosophila mojavensis (taxid:7230)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 36/117 (30%), Positives = 57/117 (48%)

Query:    16 SSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVADSSNNGETNS 75
             +++ F+ LLD ++  +  E H + + G   N          +A++  R+ +  N      
Sbjct:    50 ANYLFQGLLDDVVAGIFIEIHHLRKTG---NLTALDGVGEENAESAYRICEMPN------ 100

Query:    76 KYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
                +DIFG +      +   C +C R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct:   101 ---LDIFGISTAKKPMDC-TCPHCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT 153

GO:0000124 "SAGA complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|B3NHQ1 Sgf11 "SAGA-associated factor 11 homolog" [Drosophila erecta (taxid:7220)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 38/119 (31%), Positives = 57/119 (47%)

Query:    14 QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVADSSNNGET 73
             + S++ F+ LLD  +V + +E H + + G   N         +   +  R+ +  N    
Sbjct:    42 EASNYLFQTLLDDAVVGIFNETHHLRKSG---NLAALDG---VPEDSTYRMCEMPN---- 91

Query:    74 NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
                  +DIFG +      +   C NC R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct:    92 -----LDIFGISTAKKPMDC-TCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT 144

GO:0000124 "SAGA complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|B4J1U4 Sgf11-1 "SAGA-associated factor 11 homolog 1" [Drosophila grimshawi (taxid:7222)]

 Score = 130 (50.8 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 36/119 (30%), Positives = 56/119 (47%)

Query:    14 QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVADSSNNGET 73
             + S++ ++ LLD ++  +  E H + + G   N          + ++   + +  N    
Sbjct:    48 EASNYLYQALLDDVVAGIFIETHHLRKTG---NLAALDGVGEENLESAFHICEMPN---- 100

Query:    74 NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
                  +DIFG +  A       C NC R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct:   101 -----LDIFGIS-TAKKQMDCTCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT 153

GO:0000124 "SAGA complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|B4J1U5 Sgf11-2 "SAGA-associated factor 11 homolog 2" [Drosophila grimshawi (taxid:7222)]

 Score = 130 (50.8 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 36/119 (30%), Positives = 56/119 (47%)

Query:    14 QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVADSSNNGET 73
             + S++ ++ LLD ++  +  E H + + G   N          + ++   + +  N    
Sbjct:    48 EASNYLYQALLDDVVAGIFIETHHLRKTG---NLAALDGVGEENLESAFHICEMPN---- 100

Query:    74 NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
                  +DIFG +  A       C NC R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct:   101 -----LDIFGIS-TAKKQMDCTCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT 153

GO:0000124 "SAGA complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|B4PJ01 Sgf11 "SAGA-associated factor 11 homolog" [Drosophila yakuba (taxid:7245)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 38/119 (31%), Positives = 56/119 (47%)

Query:    14 QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFXXXXXXLRLSAQARARVADSSNNGET 73
             + S + F+ LLD  +V + +E H + + G   N         +   +  R+ +  N    
Sbjct:    42 EASKYLFQTLLDDAVVGIFNETHHLRKSG---NLAALDG---VPEDSTYRMCEMPN---- 91

Query:    74 NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGR-KARLKVTRSAT 131
                  +DIFG +      +   C NC R + A RFAPHLEKCMG GR  +R+   R AT
Sbjct:    92 -----LDIFGISTAKKPMDC-TCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLAT 144

GO:0000124 "SAGA complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam08209	33	pfam08209, Sgf11, Sgf11 (transcriptional regulatio	2e-14

>gnl|CDD|203878 pfam08209, Sgf11, Sgf11 (transcriptional regulation protein)

 Score = 63.4 bits (155), Expect = 2e-14
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 90  ANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKA 122
            +    C NCGR I A RFAPHLEKC+G GR+ 
Sbjct: 1   TSAYVTCPNCGRQIAASRFAPHLEKCLGMGRRR 33

The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae. The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG2612	103	consensus Predicted integral membrane protein [Fun	99.96
PF08209	33	Sgf11: Sgf11 (transcriptional regulation protein);	99.8
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.41
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	95.53
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	86.08

>KOG2612 consensus Predicted integral membrane protein [Function unknown]

Probab=99.96  E-value=9.9e-30  Score=191.69  Aligned_cols=99  Identities=31%  Similarity=0.494  Sum_probs=85.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCccchhhHHHHHHHHHhhhhhcCCCCCCCCCCCcccceeCccCCC
Q 030333            9 MSAHSQLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGETNSKYVVDIFGQTHPA   88 (179)
Q Consensus         9 ~s~l~~LA~~Iy~dLLddiIlDIv~EvHR~~KlGl~~~l~~~~~el~~~~~a~~~~~Dps~~~~~~~~~~~DIfG~~~~~   88 (179)
                      ...++++++.||++|||+.|+||+.|.|+.+|+|-...++...|.      ..+++ +|.        +.+||||..+++
T Consensus         5 ~iniDe~aNgilnnLL~~~iqdI~a~e~~~qkl~k~~~~D~rped------ssY~f-~~~--------gnLDI~Giqkqa   69 (103)
T KOG2612|consen    5 PINIDEAANGILNNLLDDAIQDIFAEEHHLQKLGKLAALDGRPED------SSYRF-CEM--------GNLDIFGIQKQA   69 (103)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccc------cceee-cCC--------CCcchhhhhhhc
Confidence            456899999999999999999999999999999988887754332      22333 333        579999999999


Q ss_pred             CCCceeeeCCCCCcccccccchhHHHhhcCCccc
Q 030333           89 VANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKA  122 (179)
Q Consensus        89 ~~~~~~~C~nC~R~v~a~RfA~HLekCmg~gr~s  122 (179)
                      +...+++|+||+|.|+|+|||||||||||||++|
T Consensus        70 ek~~~~hCeNC~RdVaAaR~AaHLekCl~~Ga~r  103 (103)
T KOG2612|consen   70 EKPMDCHCENCDRDVAAARFAAHLEKCLGMGAIR  103 (103)
T ss_pred             cCCccccCCCCccHHHHHHHHHHHHHHHhccccC
Confidence            9999999999999999999999999999999864

>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast)

Probab=99.80  E-value=1.2e-20  Score=118.59  Aligned_cols=32  Identities=63%  Similarity=1.274  Sum_probs=25.5

Q ss_pred             CceeeeCCCCCcccccccchhHHHhhcCCccc
Q 030333           91 NEIFECMNCGRSIVAGRFAPHLEKCMGKGRKA  122 (179)
Q Consensus        91 ~~~~~C~nC~R~v~a~RfA~HLekCmg~gr~s  122 (179)
                      +++|+|+||+|+|+++|||||||||||+||+|
T Consensus         2 ~~~~~C~nC~R~v~a~RfA~HLekCmg~g~~~   33 (33)
T PF08209_consen    2 SPYVECPNCGRPVAASRFAPHLEKCMGRGRRR   33 (33)
T ss_dssp             S-EEE-TTTSSEEEGGGHHHHHHHHTCH----
T ss_pred             CCeEECCCCcCCcchhhhHHHHHHHHccCCCC
Confidence            67999999999999999999999999999864

The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.41  E-value=0.00093  Score=39.18  Aligned_cols=23  Identities=30%  Similarity=0.735  Sum_probs=21.6

Q ss_pred             eeeeCCCCCcccccccchhHHHh
Q 030333           93 IFECMNCGRSIVAGRFAPHLEKC  115 (179)
Q Consensus        93 ~~~C~nC~R~v~a~RfA~HLekC  115 (179)
                      .+.|+.|+|.+...|+.-|+..|
T Consensus         2 l~~C~~CgR~F~~~~l~~H~~~C   24 (25)
T PF13913_consen    2 LVPCPICGRKFNPDRLEKHEKIC   24 (25)
T ss_pred             CCcCCCCCCEECHHHHHHHHHhc
Confidence            57899999999999999999988

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=95.53  E-value=0.0049  Score=36.56  Aligned_cols=25  Identities=24%  Similarity=0.662  Sum_probs=22.6

Q ss_pred             eeeeCCCCCcccccccchhHHHhhc
Q 030333           93 IFECMNCGRSIVAGRFAPHLEKCMG  117 (179)
Q Consensus        93 ~~~C~nC~R~v~a~RfA~HLekCmg  117 (179)
                      ++.||.|++.|....+-.||+.|+.
T Consensus         1 ~v~CPiC~~~v~~~~in~HLD~CL~   25 (26)
T smart00734        1 LVQCPVCFREVPENLINSHLDSCLX   25 (26)
T ss_pred             CCcCCCCcCcccHHHHHHHHHHhcc
Confidence            3689999999999999999999975

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=86.08  E-value=0.38  Score=48.54  Aligned_cols=66  Identities=23%  Similarity=0.324  Sum_probs=44.1

Q ss_pred             CceeeeCCCCCccc-ccccchhHH--HhhcCCcccchhhhhhhh-hhhcccCCCCCCCCCCCCCCCCCCC
Q 030333           91 NEIFECMNCGRSIV-AGRFAPHLE--KCMGKGRKARLKVTRSAT-AAQNRYTRGSPGSSYSSYSNSTGMN  156 (179)
Q Consensus        91 ~~~~~C~nC~R~v~-a~RfA~HLe--kCmg~gr~sr~~a~rs~~-a~~~~~~~~~~~~s~spy~~~~~~n  156 (179)
                      -+-|+|+||++-++ .+-|--|+.  ||.+|+-.-.|..+---| -+...+.+.+|+++++||.----+|
T Consensus       307 EKPfeCpnCkKRFSHSGSySSHmSSKKCIsli~vngr~R~~lKt~~~Sp~saSsSp~~s~~pq~r~klen  376 (1007)
T KOG3623|consen  307 EKPFECPNCKKRFSHSGSYSSHMSSKKCISLILVNGRNRALLKTLEKSPGSASSSPRRSPSPQGRGKLEN  376 (1007)
T ss_pred             CCCcCCcccccccccCCcccccccccchhhhhcccCcchhhhhhcccCCcccCCCCCCCCChhHhhhccC
Confidence            45699999998775 568999995  799886554432211111 1223445677899999988766666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
3mhh_C	99	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		5e-04

>pdb|3MHH|C Chain C, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 99

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 79  VDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKG 119
           +DI G      +++   C NCGR + A R A HL++C+ +G
Sbjct: 56  LDINGLQKQQESSQYIHCENCGRDVSANRLAAHLQRCLSRG 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
3mhs_C	99	SAGA-associated factor 11; multi-protein complex,	1e-24

>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 2lo2_A 3kjl_E 3kik_E Length = 99

 Score = 90.9 bits (225), Expect = 1e-24
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 19/108 (17%)

Query: 14  QLSSHFFEDLLDSIIVDVASECHRVARLGLDRNFEEEEEELRLSAQARARVADSSNNGET 73
            +S+    +LL ++I D+ +      +L   R  +        +                
Sbjct: 10  SISNGILNNLLTTLIQDIVARETTQQQLLKTRYPDLRSYYFDPNGS-------------- 55

Query: 74  NSKYVVDIFGQTHPAVANEIFECMNCGRSIVAGRFAPHLEKCMGKGRK 121
                +DI G      +++   C NCGR + A R A HL++C+ +G +
Sbjct: 56  -----LDINGLQKQQESSQYIHCENCGRDVSANRLAAHLQRCLSRGAR 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3mhs_C	99	SAGA-associated factor 11; multi-protein complex,	100.0
3vhs_A	29	ATPase wrnip1; zinc finger, ubiquitin-binding doma	95.63
2vy4_A	37	U11/U12 small nuclear ribonucleoprotein 48 kDa pro	93.02
2lo3_A	44	SAGA-associated factor 73; zinc-finger, deubiquiti	88.32

>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E

Probab=100.00  E-value=3.1e-34  Score=216.86  Aligned_cols=91  Identities=26%  Similarity=0.537  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccCccchhhHHHHHHH-HHhhhhhcCCCCCCCCCCCcccceeCccCCC
Q 030333           11 AHSQLSSHFFEDLLDSIIVDVAS-ECHRVARLGLDRNFEEEEEELRLS-AQARARVADSSNNGETNSKYVVDIFGQTHPA   88 (179)
Q Consensus        11 ~l~~LA~~Iy~dLLddiIlDIv~-EvHR~~KlGl~~~l~~~~~el~~~-~~a~~~~~Dps~~~~~~~~~~~DIfG~~~~~   88 (179)
                      .+++++++||++||+++|+|||+ |+++.+++             +++ +..+.+..++        .+++||||+++++
T Consensus         7 t~~~~s~~Iy~nLl~~~i~dIv~~e~~~~k~l-------------~~r~p~~k~y~~~~--------~~~lDIfG~~~~~   65 (99)
T 3mhs_C            7 TIDSISNGILNNLLTTLIQDIVARETTQQQLL-------------KTRYPDLRSYYFDP--------NGSLDINGLQKQQ   65 (99)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHCTTCCCCCCCT--------TSCSCTTSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCCCCCCceecC--------CCCcccCCCcCcc
Confidence            58999999999999999999999 55554441             211 1123333333        4789999999998


Q ss_pred             CCCceeeeCCCCCcccccccchhHHHhhcCCccc
Q 030333           89 VANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKA  122 (179)
Q Consensus        89 ~~~~~~~C~nC~R~v~a~RfA~HLekCmg~gr~s  122 (179)
                      +++++|+|+||+|+|+|+|||||||||||+||++
T Consensus        66 ~~s~~~~C~nC~R~vaa~RFApHLeKCmg~GR~~   99 (99)
T 3mhs_C           66 ESSQYIHCENCGRDVSANRLAAHLQRCLSRGARR   99 (99)
T ss_dssp             TTSCEEECTTTCCEEEGGGHHHHHHHHSCC----
T ss_pred             cCCCeEECCCCCCCchhhhhHHHHHHHHccCCCC
Confidence            8999999999999999999999999999999864

>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}

Probab=95.63  E-value=0.0041  Score=36.99  Aligned_cols=24  Identities=25%  Similarity=0.728  Sum_probs=22.5

Q ss_pred             eeeeCCCCCcccccccchhHHHhh
Q 030333           93 IFECMNCGRSIVAGRFAPHLEKCM  116 (179)
Q Consensus        93 ~~~C~nC~R~v~a~RfA~HLekCm  116 (179)
                      .++||.|...+.+.-.-.||++|+
T Consensus         6 ~vqcpvcqq~mpaahin~hldrcl   29 (29)
T 3vhs_A            6 QVQCPVCQQMMPAAHINSHLDRCL   29 (29)
T ss_dssp             EEECTTTCCEEEGGGHHHHHHHHC
T ss_pred             eeeChHHHHhCcHHHHHHHHhccC
Confidence            479999999999999999999996

>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A

Probab=93.02  E-value=0.043  Score=34.11  Aligned_cols=27  Identities=19%  Similarity=0.459  Sum_probs=24.3

Q ss_pred             CceeeeC-CCCCcccccccchhHHHhhc
Q 030333           91 NEIFECM-NCGRSIVAGRFAPHLEKCMG  117 (179)
Q Consensus        91 ~~~~~C~-nC~R~v~a~RfA~HLekCmg  117 (179)
                      .+++.|| |..=.|...||..||.||--
T Consensus         3 ~~~v~CPyd~~H~i~~~~l~~Hl~kC~~   30 (37)
T 2vy4_A            3 DEVVICPYDSNHHMPKSSLAKHMASCRL   30 (37)
T ss_dssp             CCCEECTTTSSCEECGGGHHHHHHHHHH
T ss_pred             ceEEECCCCCCeEeCHHHHHHHHHHHhh
Confidence            4689999 99999999999999999964

>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}

Probab=88.32  E-value=0.23  Score=32.32  Aligned_cols=29  Identities=28%  Similarity=0.652  Sum_probs=26.0

Q ss_pred             CCceeeeCCCCCcccccccchhHHH-hhcC
Q 030333           90 ANEIFECMNCGRSIVAGRFAPHLEK-CMGK  118 (179)
Q Consensus        90 ~~~~~~C~nC~R~v~a~RfA~HLek-Cmg~  118 (179)
                      ...|-.|..|||+|+.+-.--|||. |-|+
T Consensus        14 ~~~YRvC~~CgkPi~lsAIvdHLenhC~~~   43 (44)
T 2lo3_A           14 PIQYRVCEKCGKPLALTAIVDHLENHCAGA   43 (44)
T ss_dssp             CCCEEECTTTCCEEETTTHHHHHHHCCTTC
T ss_pred             cccchhhcccCCcchHHHHHHHHHHHhccC
Confidence            5679999999999999999999998 8764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00