Citrus Sinensis ID: 030335

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGLYLSFVVKSQKRT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHccHHHHHHcEEEEEEEEEEEEEEEEcHHHHHHHcccccEEEEcccccccccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccEEcccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHEcccccccEEEEEcHHHHHHHcccccEEEEEcccccccccccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
matlyapsilaskpllssrpqltlglrvgsptlrlpsrahsrSILTVRagatdseysskrsssnepretimlpgcdynhwlivmefpkdpaptrEQMIETYLNTLATVLGSMEEAKKNMYAFStttytgfqctvseetsekfkglpgvlwvlpdsyidvknkdyggLYLSFVVKSQKRT
Flexible Loop (DISEMBL)
matlyapsilaskpllssrpqltlglrvgsptlrlpsrahsrsiltvragatdseysskrsssnepretimLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGLYLSFVVKSQKRT
Low Complexity Region (SEG)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDseysskrsssNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGLYLSFVVKSQKRT
Disordered region (IsUnstruct)
*********************************************************************IMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGLYLSFVV******
Disordered Region (DISOPRED)
**********************************************************************MLPGCDYNHWLIVMEFP*******EQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGLYL**********
Disordered Region (DISEMBL)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAG****************RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGLYLSFVVKSQKRT
Disordered Region (DISPRO)
*********************LTLGLRVGSPTLRLPSRAHSRS**********************PRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGLYLSFVVK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGLYLSFVVKSQKRT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q38732	230	DAG protein, chloroplasti	N/A	no	0.726	0.565	0.814	2e-55
Q9LKA5	395	Uncharacterized protein A	no	no	0.581	0.263	0.523	1e-27

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score =  215 bits (547), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 119/135 (88%), Gaps = 5/135 (3%)

Query: 36  PSRAHSRSILTVRAGATDSEYSSKRSSSNEPRE----TIMLPGCDYNHWLIVMEFPKDPA 91
           P ++ S +  TVRA  TD EYSS+R+++N        TIMLPGCDYNHWLIVMEFPKDPA
Sbjct: 42  PIKSRSAAYPTVRA-LTDGEYSSRRNNNNNNSGEERETIMLPGCDYNHWLIVMEFPKDPA 100

Query: 92  PTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWV 151
           PTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWV
Sbjct: 101 PTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWV 160

Query: 152 LPDSYIDVKNKDYGG 166
           LPDSYIDVKNKDYGG
Sbjct: 161 LPDSYIDVKNKDYGG 175

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.
Antirrhinum majus (taxid: 4151)

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 77/105 (73%), Gaps = 1/105 (0%)

Query: 62  SSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYA 121
           S+  P+ETI+L GCD+ HWL+V+E P+   PTR+++I++Y+ TLA ++GS +EA+  +Y+
Sbjct: 82  SNRPPKETILLDGCDFEHWLVVVEPPQG-EPTRDEIIDSYIKTLAQIVGSEDEARMKIYS 140

Query: 122 FSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 166
            ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG
Sbjct: 141 VSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGG 185

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
225461197	229	PREDICTED: DAG protein, chloroplastic is	0.871	0.681	0.805	1e-65
21593052	232	DAG protein, putative [Arabidopsis thali	0.793	0.612	0.815	3e-63
15220382	232	putative plastid developmental protein D	0.793	0.612	0.815	3e-63
255555105	226	DAG protein, chloroplast precursor, puta	0.681	0.539	0.918	4e-61
388499642	231	unknown [Lotus japonicus]	0.798	0.619	0.782	5e-59
388515563	230	unknown [Lotus japonicus]	0.798	0.621	0.782	6e-59
356554919	222	PREDICTED: DAG protein, chloroplastic [G	0.698	0.563	0.849	9e-59
449468532	230	PREDICTED: DAG protein, chloroplastic-li	0.877	0.682	0.8	2e-58
357446239	221	DAG protein [Medicago truncatula] gi|355	0.916	0.742	0.704	3e-58
343172728	171	putative plastid developmental protein,	0.698	0.730	0.852	4e-58

>gi|225461197|ref|XP_002283211.1| PREDICTED: DAG protein, chloroplastic isoform 1 [Vitis vinifera] gi|359493924|ref|XP_003634693.1| PREDICTED: DAG protein, chloroplastic isoform 2 [Vitis vinifera]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 135/159 (84%), Gaps = 3/159 (1%)

Query: 9   ILASKPLLSSRPQLTLGLRVGSPTL-RLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPR 67
           I +S P   S  QL   LR  S +  RL SR  S ++  +RA  +D EYSSKRSSSNEPR
Sbjct: 16  ISSSHPNPRSTVQLAFPLRFNSISRPRLTSR--SGAVRPIRAAVSDGEYSSKRSSSNEPR 73

Query: 68  ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTY 127
           ETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTY
Sbjct: 74  ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTY 133

Query: 128 TGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 166
           TGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG
Sbjct: 134 TGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593052|gb|AAM65001.1| DAG protein, putative [Arabidopsis thaliana]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 129/146 (88%), Gaps = 4/146 (2%)

Query: 25  GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHW 80
           G+RVG   +P LR  S A SR  +  V+A   DS+YSSKRS+SNE RETIMLPGCDYNHW
Sbjct: 31  GIRVGDSWTPLLRSISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query: 81  LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
           LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct: 91  LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query: 141 KFKGLPGVLWVLPDSYIDVKNKDYGG 166
           KFKGLPGVLWVLPDSYIDVKNKDYGG
Sbjct: 151 KFKGLPGVLWVLPDSYIDVKNKDYGG 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220382|ref|NP_172610.1| putative plastid developmental protein DAG [Arabidopsis thaliana] gi|6554182|gb|AAF16628.1|AC011661_6 T23J18.10 [Arabidopsis thaliana] gi|26450103|dbj|BAC42171.1| unknown protein [Arabidopsis thaliana] gi|28827520|gb|AAO50604.1| putative DAG protein [Arabidopsis thaliana] gi|332190614|gb|AEE28735.1| putative plastid developmental protein DAG [Arabidopsis thaliana]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 129/146 (88%), Gaps = 4/146 (2%)

Query: 25  GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHW 80
           G+RVG   +P LR  S A SR  +  V+A   DS+YSSKRS+SNE RETIMLPGCDYNHW
Sbjct: 31  GIRVGDSWTPLLRNISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query: 81  LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
           LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct: 91  LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query: 141 KFKGLPGVLWVLPDSYIDVKNKDYGG 166
           KFKGLPGVLWVLPDSYIDVKNKDYGG
Sbjct: 151 KFKGLPGVLWVLPDSYIDVKNKDYGG 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555105|ref|XP_002518590.1| DAG protein, chloroplast precursor, putative [Ricinus communis] gi|223542435|gb|EEF43977.1| DAG protein, chloroplast precursor, putative [Ricinus communis]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/123 (91%), Positives = 117/123 (95%), Gaps = 1/123 (0%)

Query: 44  ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLN 103
           +L  RA ATDS+YS+KRSSSNE RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLN
Sbjct: 48  LLMTRA-ATDSDYSAKRSSSNESRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLN 106

Query: 104 TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKD 163
           TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV E TSEKFKGLPGVLWVLPDSYIDVKNKD
Sbjct: 107 TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKD 166

Query: 164 YGG 166
           YGG
Sbjct: 167 YGG 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499642|gb|AFK37887.1| unknown [Lotus japonicus]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 125/147 (85%), Gaps = 4/147 (2%)

Query: 20  PQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNH 79
           P L    RV   ++R  +RA  R+   +RA A D +YS+KRSSS+E RETIMLPGCDYNH
Sbjct: 30  PSLNFN-RVAPRSIRAVTRA--RNPTRIRA-ALDEDYSAKRSSSSEQRETIMLPGCDYNH 85

Query: 80  WLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETS 139
           WLIVMEFPKDPAP+REQMIETYL TL+TVLGSMEEAKKNMYAFSTTTYTGFQCTV E TS
Sbjct: 86  WLIVMEFPKDPAPSREQMIETYLFTLSTVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATS 145

Query: 140 EKFKGLPGVLWVLPDSYIDVKNKDYGG 166
           EKFKGLPGVLWVLPDSYIDVKNKDYGG
Sbjct: 146 EKFKGLPGVLWVLPDSYIDVKNKDYGG 172

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515563|gb|AFK45843.1| unknown [Lotus japonicus]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 125/147 (85%), Gaps = 4/147 (2%)

Query: 20  PQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNH 79
           P L    RV   ++R  +RA  R+   +RA A D +YS+KRSSS+E RETIMLPGCDYNH
Sbjct: 30  PSLNFN-RVAPRSIRAVTRA--RNPTRIRA-ALDEDYSAKRSSSSEQRETIMLPGCDYNH 85

Query: 80  WLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETS 139
           WLIVMEFPKDPAP+REQMIETYL TL+TVLGSMEEAKKNMYAFSTTTYTGFQCTV E TS
Sbjct: 86  WLIVMEFPKDPAPSREQMIETYLFTLSTVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATS 145

Query: 140 EKFKGLPGVLWVLPDSYIDVKNKDYGG 166
           EKFKGLPGVLWVLPDSYIDVKNKDYGG
Sbjct: 146 EKFKGLPGVLWVLPDSYIDVKNKDYGG 172

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554919|ref|XP_003545788.1| PREDICTED: DAG protein, chloroplastic [Glycine max]

 Score =  231 bits (589), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 41  SRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIET 100
           +R+   +RA A D ++S+KRS++NE RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+T
Sbjct: 42  TRNCNRIRA-ALDGDFSAKRSNNNEQRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDT 100

Query: 101 YLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVK 160
           YL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV E TSEKFKGLPGVLWVLPDSYIDVK
Sbjct: 101 YLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVK 160

Query: 161 NKDYGG 166
           NKDYGG
Sbjct: 161 NKDYGG 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468532|ref|XP_004151975.1| PREDICTED: DAG protein, chloroplastic-like [Cucumis sativus]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 135/160 (84%), Gaps = 3/160 (1%)

Query: 9   ILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHS--RSILTVRAGATDSEYSSKRSSSNEP 66
           I   KP L  R QL   L + S +    +R HS  +S + VRA A DS+YSSKRSSSNE 
Sbjct: 15  IPLQKPSLLQRVQLGHFLHLNSVSQISTARLHSGSQSRVLVRA-ALDSDYSSKRSSSNEQ 73

Query: 67  RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTT 126
           RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTT
Sbjct: 74  RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTT 133

Query: 127 YTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 166
           YTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG
Sbjct: 134 YTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446239|ref|XP_003593397.1| DAG protein [Medicago truncatula] gi|355482445|gb|AES63648.1| DAG protein [Medicago truncatula]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/166 (70%), Positives = 132/166 (79%), Gaps = 2/166 (1%)

Query: 1   MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKR 60
           MAT+ + +I +SK L  + P  T         L + S+  SR+ + ++A   D +YSSKR
Sbjct: 1   MATISSFTI-SSKTLTLNLPYHTKTPNFNFNPLSIKSKPSSRNPIRIQA-VLDEDYSSKR 58

Query: 61  SSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMY 120
           S SNE RETIMLPGCDYNHWLIVMEFPKDPAP+R+QMI+TYL TLATVLGSMEEAKKNMY
Sbjct: 59  SGSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLQTLATVLGSMEEAKKNMY 118

Query: 121 AFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 166
           AFSTTTYTGFQCTV E TSEKFKGLPGVLWVLPDSYIDVKN DYGG
Sbjct: 119 AFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNMDYGG 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172728|gb|AEL99067.1| putative plastid developmental protein, partial [Silene latifolia] gi|343172730|gb|AEL99068.1| putative plastid developmental protein, partial [Silene latifolia]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 120/129 (93%), Gaps = 4/129 (3%)

Query: 41  SRSILTVRAGATDSEYSSKRSSSN---EPRETIMLPGCDYNHWLIVMEFPKDPAPTREQM 97
           +R  +++RA AT+ +YS+KRSSSN   E RETIMLPGCDYNHWLIVMEFPKDP+PTREQM
Sbjct: 4   ARRRVSIRASATN-DYSAKRSSSNNNGEQRETIMLPGCDYNHWLIVMEFPKDPSPTREQM 62

Query: 98  IETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYI 157
           I+TYL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV EETSEKFKGLPGVLWVLPDSYI
Sbjct: 63  IDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETSEKFKGLPGVLWVLPDSYI 122

Query: 158 DVKNKDYGG 166
           DVKNKDYGG
Sbjct: 123 DVKNKDYGG 131

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.793	0.612	0.760	2.3e-55
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.726	0.347	0.575	4e-35
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.893	0.655	0.512	5.1e-35
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.983	0.803	0.408	4.9e-30
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.553	0.236	0.584	1.9e-28
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.530	0.414	0.578	8.2e-28
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.910	0.412	0.391	1e-27
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.877	0.676	0.438	1.5e-26
TAIR|locus:2156344	723	MORF4 "AT5G44780" [Arabidopsis	0.519	0.128	0.585	6.4e-25
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.519	0.484	0.458	1.5e-19

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 111/146 (76%), Positives = 119/146 (81%)

Query:    25 GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDXXXXXXXXXXNEPRETIMLPGCDYNHW 80
             G+RVG   +P LR  S A SR  +  V+A   D          NE RETIMLPGCDYNHW
Sbjct:    31 GIRVGDSWTPLLRNISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query:    81 LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
             LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct:    91 LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query:   141 KFKGLPGVLWVLPDSYIDVKNKDYGG 166
             KFKGLPGVLWVLPDSYIDVKNKDYGG
Sbjct:   151 KFKGLPGVLWVLPDSYIDVKNKDYGG 176

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 76/132 (57%), Positives = 89/132 (67%)

Query:    35 LPSRAHSRSILTVRAGATDXXXXXXXXXXNEPRETIMLPGCDYNHWLIVMEFPKDPAPTR 94
             LP+     S     A   D            P E I+  GCDYNHWLI MEFP DP PTR
Sbjct:    50 LPAAGFRSSAAASAAARGDDYGRRDVDEKISPDE-ILFEGCDYNHWLITMEFP-DPKPTR 107

Query:    95 EQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPD 154
             E+MIETYL TLA V+GS EEAKK MYAFSTTTY GFQ  ++EE SEKF+GLPGV+++LPD
Sbjct:   108 EEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEEMSEKFRGLPGVVFILPD 167

Query:   155 SYIDVKNKDYGG 166
             SY+  + K+YGG
Sbjct:   168 SYLYPETKEYGG 179

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 85/166 (51%), Positives = 104/166 (62%)

Query:     8 SILASKPLLSSRPQLTLGL--RVGSPTLRL-PSRAHSRSILTVRAGATDXXXXXXXXXXN 64
             S  +S P LSSR +  + L  +V S    L P    +R   T  +G +            
Sbjct:    23 SYSSSFPTLSSRSRFAMPLIEKVSSSRTSLGPCYISTRP-KTSGSGYSPLNDPSPNWSNR 81

Query:    65 EPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFST 124
              P+ETI+L GCDY HWLIVMEF  DP PT E+MI +Y+ TL +VLG  EEAKK +Y+  T
Sbjct:    82 PPKETILLDGCDYEHWLIVMEFT-DPKPTEEEMINSYVKTLTSVLGWQEEAKKKIYSVCT 140

Query:   125 TTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG-LYL 169
             +TYTGF   +SEE S K K LPGVLWVLPDSY+DV NKDYGG LY+
Sbjct:   141 STYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYV 186

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 74/181 (40%), Positives = 102/181 (56%)

Query:     3 TLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDXXXXXXXXX 62
             T +    L S   L + P++   +  G   L   +R  S      R+G+T          
Sbjct:     8 TRHLTRALLSNVTLMAPPRIPSSVHYGGSRLGCSTRFFSIRCGANRSGSTYSPLNSGSNF 67

Query:    63 XNEPRETI--MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMY 120
              + P   +  + PGCDY HWLIVM+ P     T++QMI+ Y+ TLA V+GS EEAKK +Y
Sbjct:    68 SDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIY 127

Query:   121 AFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG-LYLS--FVVKSQK 177
               S   Y GF C + EETS K +GLPGVL+VLPDSY+D +NKDYG  L+++   V +S +
Sbjct:   128 NVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPE 187

Query:   178 R 178
             R
Sbjct:   188 R 188

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 59/101 (58%), Positives = 77/101 (76%)

Query:    68 ETIMLPGCDYNHWLIVMEFPKDPAP-TREQMIETYLNTLATVLG-SMEEAKKNMYAFSTT 125
             +T++  GCDYNHWLI M+F K+  P + E+M+  Y  T A  LG S+EEAK+ MYA STT
Sbjct:    78 DTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACSTT 137

Query:   126 TYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 166
             TY GFQ  ++E+ SEKFK LPGV+++LPDSYID +NK+YGG
Sbjct:   138 TYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGG 178

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query:    71 MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 130
             + PGCDY HWLIVM+ P     T++QMI+ Y+ TLA ++GS EEAKK +Y  S   Y GF
Sbjct:    87 LFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGF 146

Query:   131 QCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYG 165
              C + EETS K +GLPGVL++LPDSY+D +NKDYG
Sbjct:   147 GCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYG 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 67/171 (39%), Positives = 98/171 (57%)

Query:     1 MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDXXXXXXX 60
             ++ L+  S  +S PL  S P  +L L    P +   S      +++V+  +T        
Sbjct:    18 LSFLFTRSFASSAPLAKS-PASSL-LSRSRPLVAAFSSVFRGGLVSVKGLSTQATSSSLN 75

Query:    61 X-----XXNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEA 115
                       P+ETI+L GCD+ HWL+V+E P    PTR+++I++Y+ TLA ++GS +EA
Sbjct:    76 DPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVGSEDEA 134

Query:   116 KKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 166
             +  +Y+ ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG
Sbjct:   135 RMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGG 185

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 71/162 (43%), Positives = 91/162 (56%)

Query:     6 APSILASKPLLSSRPQLTLGLRVGS-PTLRLPSRAHSRSILTVRAGATDXXXXXXXXXXN 64
             +PS L S  L+S R   T+   VG  P L   +   +R  +    G+             
Sbjct:    26 SPSPLPSH-LISRRFSPTIFHAVGYIPALTRFTTIRTR--MDRSGGSYSPLKSGSNFSDR 82

Query:    65 EPRETIML-PGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFS 123
              P E   L PGCDY HWLIVME P      ++QMI+ Y+ TLA ++GS EEA+K +Y  S
Sbjct:    83 PPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVS 142

Query:   124 TTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYG 165
                Y GF C + EETS K +GLPGVL+VLPDSY+D + KDYG
Sbjct:   143 CERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYG 184

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2156344 MORF4 "AT5G44780" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.4e-25, P = 6.4e-25
 Identities = 55/94 (58%), Positives = 69/94 (73%)

Query:    74 GCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLG-SMEEAKKNMYAFSTTTYTGFQC 132
             GCD+NHWLI M FPKD  P+RE+MI  +  T A  L  S+EEAKK +YA  TT+Y GFQ 
Sbjct:    79 GCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGFQA 138

Query:   133 TVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 166
             T++    EKF+ LPGV +++PDSYIDV+NK YGG
Sbjct:   139 TMTIGEVEKFRDLPGVQYIIPDSYIDVENKVYGG 172

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 44/96 (45%), Positives = 65/96 (67%)

Query:    71 MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 130
             ++ GCDY HWL++M+ P +  PTR  ++++++ TLA  LGS EEAK+++Y+ ST  Y  F
Sbjct:    48 LVEGCDYKHWLVLMK-PPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAF 106

Query:   131 QCTVSEETSEKFKGLPGVLWVLPDSYI-DVKNKDYG 165
              C + E  + K + LP V WVLPDS+I D  N+ YG
Sbjct:   107 GCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNR-YG 141

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	99.37

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.37  E-value=4.9e-13  Score=93.42  Aligned_cols=77  Identities=23%  Similarity=0.431  Sum_probs=55.5

Q ss_pred             eEEEEecCCCCCCCChhhhHHHHHHHHHHhhCCh----Hhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeC
Q 030335           79 HWLIVMEFPKDPAPTREQMIETYLNTLATVLGSM----EEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLP  153 (179)
Q Consensus        79 tYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~----eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfP  153 (179)
                      +|||.|+....    .....+.|.+|+.+++.+.    ......+ |+|. ..++||+++|+++++++|+++|+|.+|.|
T Consensus         1 ~YIV~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~   75 (82)
T PF05922_consen    1 RYIVVFKDDAS----AASSFSSHKSWQASILKSALKSASSINAKVLYSYD-NAFNGFSAKLSEEEIEKLRKDPGVKSVEP   75 (82)
T ss_dssp             EEEEEE-TTST----HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEES-STSSEEEEEE-HHHHHHHHTSTTEEEEEE
T ss_pred             CEEEEECCCCC----cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEe-eeEEEEEEEeCHHHHHHHHcCCCeEEEEe
Confidence            59999987632    2234677888888765532    1234455 9999 89999999999999999999999999999


Q ss_pred             CCCcccC
Q 030335          154 DSYIDVK  160 (179)
Q Consensus       154 D~~~kLH  160 (179)
                      |..+++|
T Consensus        76 D~~v~l~   82 (82)
T PF05922_consen   76 DQVVSLH   82 (82)
T ss_dssp             ECEEEE-
T ss_pred             CceEecC
Confidence            9998876

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	99.48
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	99.18
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	99.02
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.3
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	97.44
3t41_A	471	Epidermin leader peptide processing serine protea;	96.42
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	95.47
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	94.7
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	94.09

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=99.48  E-value=1.1e-14  Score=110.20  Aligned_cols=75  Identities=17%  Similarity=0.172  Sum_probs=62.1

Q ss_pred             ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY  156 (179)
Q Consensus        78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~  156 (179)
                      +.|||+|+....     ...++.|++||.+++++ +.+...| |+|+ +.|+||+|+|+++|+++|+++|+|++|.||+.
T Consensus        38 ~~YIV~lk~~~~-----~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~-~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~  110 (114)
T 2w2n_P           38 GTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS  110 (114)
T ss_dssp             EEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEEC-SSSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred             CcEEEEECCCCC-----HHHHHHHHHHHHHHhhh-cccCCceEEEec-ccceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence            689999976431     24567899999998864 2234567 9999 99999999999999999999999999999998


Q ss_pred             ccc
Q 030335          157 IDV  159 (179)
Q Consensus       157 ~kL  159 (179)
                      ++.
T Consensus       111 v~~  113 (114)
T 2w2n_P          111 VFA  113 (114)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=99.18  E-value=6.2e-11  Score=82.93  Aligned_cols=69  Identities=14%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY  156 (179)
Q Consensus        78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~  156 (179)
                      ..|||.+......        +..+..+....|      ..| |+|+ + |+||+|+|+++++++|++.|+|..|.||..
T Consensus         9 ~~YIV~~k~~~~~--------~~~~~~~~~~~g------~~i~~~y~-~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~   72 (80)
T 3cnq_P            9 KKYIVGFKQGFKS--------CAKKEDVISEKG------GKLQKCFK-Y-VDAASATLNEKAVEELKKDPSVAYVEEDKL   72 (80)
T ss_dssp             CEEEEEECTTCCS--------HHHHHHHHHTTT------CEEEEECS-S-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred             CCEEEEECCCCCh--------HHHHHHHHHHcC------CcceEEEc-c-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence            6899999754321        111222222222      356 9999 8 999999999999999999999999999999


Q ss_pred             cccCcc
Q 030335          157 IDVKNK  162 (179)
Q Consensus       157 ~kLHT~  162 (179)
                      ++++|+
T Consensus        73 v~~~tt   78 (80)
T 3cnq_P           73 YRALSA   78 (80)
T ss_dssp             EEECCC
T ss_pred             EEEeee
Confidence            999976

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=99.02  E-value=3.2e-10  Score=87.28  Aligned_cols=75  Identities=17%  Similarity=0.163  Sum_probs=55.4

Q ss_pred             ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY  156 (179)
Q Consensus        78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~  156 (179)
                      ..|||.|.....     ...++.|.+++.+++... .....| |+|+ +.|+||+|+|+++++++|+++|+|.+|.||..
T Consensus        48 ~~YIV~~K~~~~-----~~~~~~~~~~l~~~~~~r-~~g~~i~~~Y~-~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~  120 (124)
T 2qtw_A           48 GTYVVVLKEETH-----LSQSERTARRLQAQAARR-GYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS  120 (124)
T ss_dssp             EEEEEEECTTCC-----HHHHHHHHHHHHHHHHHT-TCCCEEEEEEC-SSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred             CCEEEEECCCCC-----HHHHHHHHHHHHHHHhhc-ccCCceEEEec-ccceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence            679999975421     234555666665532100 011256 9999 99999999999999999999999999999997


Q ss_pred             ccc
Q 030335          157 IDV  159 (179)
Q Consensus       157 ~kL  159 (179)
                      ++.
T Consensus       121 v~a  123 (124)
T 2qtw_A          121 VFA  123 (124)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            654

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=98.30  E-value=3e-06  Score=59.32  Aligned_cols=70  Identities=13%  Similarity=0.227  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCC--CCeEEEeCC
Q 030335           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGL--PGVLWVLPD  154 (179)
Q Consensus        78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~--PGVVSVfPD  154 (179)
                      ..|||.|....     +...++.|..|+...-       ..| +.|....|+||+|.|++++++.|+..  |.|..|=+|
T Consensus         3 ~sYIV~lk~~~-----~~~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D   70 (76)
T 1v5i_B            3 GKFIVIFKNDV-----SEDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (76)
T ss_dssp             EEEEEEECTTC-----CHHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ceEEEEECCCC-----CHHHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence            67999986431     1235566777765532       256 99933899999999999999999999  789999999


Q ss_pred             CCccc
Q 030335          155 SYIDV  159 (179)
Q Consensus       155 ~~~kL  159 (179)
                      ..+++
T Consensus        71 ~~v~~   75 (76)
T 1v5i_B           71 HVAHA   75 (76)
T ss_dssp             CEEEC
T ss_pred             cEEeC
Confidence            87654

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=97.44  E-value=8.6e-05  Score=71.09  Aligned_cols=76  Identities=17%  Similarity=0.167  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY  156 (179)
Q Consensus        78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~  156 (179)
                      ..|||.|.+...     .+..+.+.+++...+... .....| |.|+ +.|+||+++|+++++++|+++|+|..|.||..
T Consensus        76 g~YIV~lk~~~~-----~~~~~~~~~~l~a~~~~~-g~~~~v~~~y~-~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~  148 (692)
T 2p4e_P           76 GTYVVVLKEETH-----LSQSERTARRLQAQAARR-GYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS  148 (692)
T ss_dssp             EEEEEEECTTCC-----HHHHHHHHHHHHHHHHHT-TCCCEEEEEEC-SSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred             CcEEEEECCCCC-----HHHHHHHHHHHHHHHhhc-ccccceeeEee-ccccEEEEEeCHHHHHHHHcCCCceEEEeccc
Confidence            379999975422     123444555554332100 011245 9999 99999999999999999999999999999997


Q ss_pred             cccC
Q 030335          157 IDVK  160 (179)
Q Consensus       157 ~kLH  160 (179)
                      +..+
T Consensus       149 v~~~  152 (692)
T 2p4e_P          149 VFAQ  152 (692)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            6554

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=96.42  E-value=0.0062  Score=53.85  Aligned_cols=75  Identities=8%  Similarity=0.150  Sum_probs=48.4

Q ss_pred             cceeccCCCcceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhC-C
Q 030335           68 ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKG-L  145 (179)
Q Consensus        68 ~~~l~~g~d~ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~-~  145 (179)
                      +-+-+.+.+.+.|||.....           ....+.+.       +..-.+ |.|.  .++||+++++++++++|++ .
T Consensus        35 ~~l~~~~~~~~~yiv~~~~~-----------~~~~~~~~-------~~g~~v~~~~~--~~~~~~~~~~~~~~~~L~~~~   94 (471)
T 3t41_A           35 ENLYFQGSEELYYSVEYKNT-----------ATFNKLVK-------KKSLNVVYNIP--ELHVAQIKMTKMHANALANYK   94 (471)
T ss_dssp             --------CCEEEEEEESCH-----------HHHHHHHH-------HHTCEEEEEEG--GGTEEEEEECHHHHHHHHTCT
T ss_pred             ccceecCCCceEEEEEcCCH-----------HHHHHHHH-------hCCCEEEEecC--CccEEEEEeCHHHHHHHHhcC
Confidence            33456677778899964321           11112221       122234 8886  5999999999999999999 9


Q ss_pred             CCeEEEeCCCCcccCcc
Q 030335          146 PGVLWVLPDSYIDVKNK  162 (179)
Q Consensus       146 PGVVSVfPD~~~kLHT~  162 (179)
                      |+|.+|.||..+++++.
T Consensus        95 p~V~~v~~~~~~~~~~~  111 (471)
T 3t41_A           95 NDIKYINATCSTCITSE  111 (471)
T ss_dssp             TTEEEEEECCSSCBCCC
T ss_pred             CCCcEEEecceeccccc
Confidence            99999999999888653

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=95.47  E-value=0.017  Score=52.92  Aligned_cols=41  Identities=15%  Similarity=0.308  Sum_probs=36.9

Q ss_pred             ce-eeEeecceeeeeccCCHHHHHHh-----------hCCCCeEEEeCCCCcccC
Q 030335          118 NM-YAFSTTTYTGFQCTVSEETSEKF-----------KGLPGVLWVLPDSYIDVK  160 (179)
Q Consensus       118 ~I-YSYs~~af~GFAArLTeeEA~~L-----------s~~PGVVSVfPD~~~kLH  160 (179)
                      .+ |.|.  .++||+++|+++++++|           ++.|+|..|.||..+++.
T Consensus        61 ~v~~~~~--~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~  113 (539)
T 3afg_A           61 KIKYNYH--IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVA  113 (539)
T ss_dssp             EEEEECS--SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC
T ss_pred             eEEEEee--eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEeccccccc
Confidence            45 8886  59999999999999999           899999999999988764

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=94.70  E-value=0.017  Score=38.94  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=36.0

Q ss_pred             hcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCCcc
Q 030335          116 KKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYID  158 (179)
Q Consensus       116 k~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~~k  158 (179)
                      .-.| |.|+  .++|++|.|+++.+++|++.|||..|-+|...+
T Consensus        22 gG~i~~~~~--~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~   63 (65)
T 2z30_B           22 GGHIVYQFK--LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV   63 (65)
T ss_dssp             TCEEEEECS--SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred             CCEEEEEec--CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence            3456 8886  799999999999999999999999999998653

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=94.09  E-value=0.018  Score=50.19  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=37.9

Q ss_pred             ce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCCcccCc
Q 030335          118 NM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKN  161 (179)
Q Consensus       118 ~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~~kLHT  161 (179)
                      .+ |.|. . ++||+++|+++++++|++.|+|..|.||..++++.
T Consensus        25 ~v~~~~~-~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~   67 (395)
T 2z2z_A           25 HIVYQFK-L-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLG   67 (395)
T ss_dssp             EEEEECS-S-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECC
T ss_pred             EEEEEec-c-CCEEEEEECHHHHHHHHcCCCceEEEEeeeecccC
Confidence            45 8887 4 99999999999999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	98.21
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.16

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=1.3e-06  Score=59.38  Aligned_cols=68  Identities=12%  Similarity=0.169  Sum_probs=49.8

Q ss_pred             ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY  156 (179)
Q Consensus        78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~  156 (179)
                      +.|||.+.+.....     ..+.+.++..+       ....+ +.|+  .++||+|+|++++++.|++.|+|..|=+|..
T Consensus         2 ~~YIV~fK~~~~~~-----~~~~~~~~v~~-------~gg~v~~~~~--~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v   67 (71)
T d1scjb_           2 KKYIVGFKQTMSAM-----SSAKKKDVISQ-------KGGKVEKQFK--YVNAAAATLDEKAVKELKKDPSVAYVEEDHI   67 (71)
T ss_dssp             EEEEEEECSSSSCC-----SHHHHHHHHHT-------TTCEEEEECS--SSSEEEEEECHHHHHHHHTSTTEEEEEECCE
T ss_pred             CcEEEEECCCCChH-----HHHHHHHHHHH-------cCCeEEEEEe--ecceEEEEeCHHHHHHHHcCCCceEEeCCcE
Confidence            57999997643221     23334333332       22356 8887  5999999999999999999999999999987


Q ss_pred             ccc
Q 030335          157 IDV  159 (179)
Q Consensus       157 ~kL  159 (179)
                      .+.
T Consensus        68 ~~a   70 (71)
T d1scjb_          68 AHE   70 (71)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            654

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=98.16  E-value=3.3e-06  Score=57.35  Aligned_cols=66  Identities=15%  Similarity=0.306  Sum_probs=47.8

Q ss_pred             ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCC--eEEEeCC
Q 030335           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPG--VLWVLPD  154 (179)
Q Consensus        78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PG--VVSVfPD  154 (179)
                      .-|||.|....     ....++.+..++...-       ..+ +.|..+.|+||+|+|++++++.|+.+|+  |-.|=+|
T Consensus         3 G~YIVvlK~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D   70 (72)
T d1v5ib1           3 GKFIVIFKNDV-----SEDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (72)
T ss_dssp             EEEEEEECTTC-----CHHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ccEEEEECCCC-----CHHHHHHHHHHHHhcC-------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence            46999997532     1234566666665432       234 6666579999999999999999999776  8888777


Q ss_pred             C
Q 030335          155 S  155 (179)
Q Consensus       155 ~  155 (179)
                      .
T Consensus        71 ~   71 (72)
T d1v5ib1          71 H   71 (72)
T ss_dssp             C
T ss_pred             C
Confidence            5