Citrus Sinensis ID: 030336

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNGI
cccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEcccEEEEEccccHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHccccc
cccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEccccEEEEEcccccHHHHHHHEccccEEEEcccccccccHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHccc
massgeewspdtLAFMDLAIQQAKLALdslevpvgcvilEDGKviaagrnrttetrnaTRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSkcclyvtcepcIMCAAALSILGIKEVYYgcanekfggcgsILSLHlsdskmlnsgdvlgrkgfkctggvmASEAVSLFRSFYeqgnpngi
massgeewspDTLAFMDLAIQQAKLALDSLEVPVGCVILEdgkviaagrnrttetrnatrhAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFrsfyeqgnpngi
MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIaagrnrttetrnatrhaeMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNGI
***********TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRN***********AEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFY********
************LAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNP***
********SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNGI
*******WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query179 2.2.26 [Sep-21-2011]
Q5E9J7191 tRNA-specific adenosine d yes no 0.882 0.827 0.494 2e-40
Q6P6J0191 tRNA-specific adenosine d yes no 0.882 0.827 0.476 3e-39
Q7Z6V5191 tRNA-specific adenosine d yes no 0.882 0.827 0.476 3e-39
Q0P4H0170 tRNA-specific adenosine d yes no 0.849 0.894 0.481 1e-36
Q4V7V8175 tRNA-specific adenosine d N/A no 0.843 0.862 0.472 6e-36
Q5RIV4214 tRNA-specific adenosine d no no 0.849 0.710 0.475 2e-34
P47058250 tRNA-specific adenosine d yes no 0.871 0.624 0.357 8e-23
O94642389 tRNA-specific adenosine d yes no 0.698 0.321 0.405 2e-22
P0DA21171 tRNA-specific adenosine d yes no 0.793 0.830 0.331 2e-20
Q5XE14171 tRNA-specific adenosine d N/A no 0.793 0.830 0.331 2e-20
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 113/168 (67%), Gaps = 10/168 (5%)

Query: 11  DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVL 70
           +T  +M+ A+Q AK ALD+ EVPVGC+++ + +V+  GRN   +T+NATRHAEM AID  
Sbjct: 21  ETEKWMEQAMQMAKDALDNTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQA 80

Query: 71  LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
           LD  ++ G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+
Sbjct: 81  LDWCRRRGRSPSEV---FEHTVLYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGSV 137

Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNG 178
           L +  +D  + ++G     K F+CT G  A EAV + ++FY+Q NPN 
Sbjct: 138 LDIASAD--LPSTG-----KPFQCTPGYRAEEAVEMLKTFYKQENPNA 178
Probably participates in deamination of adenosine-34 to inosine in many tRNAs.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: -
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1 Back     alignment and function description
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2 SV=2 Back     alignment and function description
>sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1 SV=1 Back     alignment and function description
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tad2 PE=3 SV=2 Back     alignment and function description
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1 Back     alignment and function description
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
449457197191 PREDICTED: tRNA-specific adenosine deami 0.983 0.921 0.785 8e-76
255580984223 tRNA-specific adenosine deaminase subuni 0.949 0.762 0.805 2e-75
356549373182 PREDICTED: tRNA-specific adenosine deami 0.944 0.928 0.811 7e-75
255628537182 unknown [Glycine max] 0.944 0.928 0.805 4e-74
356564819182 PREDICTED: tRNA-specific adenosine deami 0.944 0.928 0.794 6e-74
296090277205 unnamed protein product [Vitis vinifera] 0.983 0.858 0.836 7e-73
124360458178 CMP/dCMP deaminase, zinc-binding [Medica 0.910 0.915 0.764 5e-71
357508883191 tRNA-specific adenosine deaminase [Medic 0.910 0.853 0.710 4e-68
297847068192 EMB2191 [Arabidopsis lyrata subsp. lyrat 0.972 0.906 0.701 5e-68
115452727183 Os03g0321900 [Oryza sativa Japonica Grou 0.910 0.890 0.723 2e-67
>gi|449457197|ref|XP_004146335.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 139/177 (78%), Positives = 157/177 (88%), Gaps = 1/177 (0%)

Query: 1   MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATR 60
           M SS E+ S DTL FM+LAIQQAKLAL++LEVPVGCVI+EDG VIA GRNRTTETRNATR
Sbjct: 1   MDSSVEDCSSDTLRFMELAIQQAKLALNNLEVPVGCVIVEDGMVIATGRNRTTETRNATR 60

Query: 61  HAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCA 120
           HAEMEAID+L++ WQ++GLS SE+A+KFSKC LYVTCEPCIMCA+ALSI+GIKEVYYGCA
Sbjct: 61  HAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSIIGIKEVYYGCA 120

Query: 121 NEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPN 177
           N+KFGGCGSILSLHL   +   SG+ LGR GFKCT G+MASEAV LFRSFYEQGNPN
Sbjct: 121 NDKFGGCGSILSLHLGSGEAPTSGNGLGR-GFKCTAGIMASEAVGLFRSFYEQGNPN 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255580984|ref|XP_002531310.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus communis] gi|223529101|gb|EEF31082.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356549373|ref|XP_003543068.1| PREDICTED: tRNA-specific adenosine deaminase 2 [Glycine max] Back     alignment and taxonomy information
>gi|255628537|gb|ACU14613.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356564819|ref|XP_003550645.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|296090277|emb|CBI40096.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|124360458|gb|ABN08468.1| CMP/dCMP deaminase, zinc-binding [Medicago truncatula] Back     alignment and taxonomy information
>gi|357508883|ref|XP_003624730.1| tRNA-specific adenosine deaminase [Medicago truncatula] gi|355499745|gb|AES80948.1| tRNA-specific adenosine deaminase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297847068|ref|XP_002891415.1| EMB2191 [Arabidopsis lyrata subsp. lyrata] gi|297337257|gb|EFH67674.1| EMB2191 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115452727|ref|NP_001049964.1| Os03g0321900 [Oryza sativa Japonica Group] gi|108707878|gb|ABF95673.1| Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed [Oryza sativa Japonica Group] gi|113548435|dbj|BAF11878.1| Os03g0321900 [Oryza sativa Japonica Group] gi|218192723|gb|EEC75150.1| hypothetical protein OsI_11352 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
TAIR|locus:505006173182 emb2191 "embryo defective 2191 0.927 0.912 0.633 2.4e-53
UNIPROTKB|Q5E9J7191 DEADC1 "tRNA-specific adenosin 0.877 0.821 0.431 2.7e-29
UNIPROTKB|E2R9C9228 ADAT2 "Uncharacterized protein 0.877 0.688 0.425 2.7e-29
UNIPROTKB|F1S713191 ADAT2 "Uncharacterized protein 0.877 0.821 0.419 5.6e-29
UNIPROTKB|Q7Z6V5191 ADAT2 "tRNA-specific adenosine 0.877 0.821 0.413 3.1e-28
MGI|MGI:1914007191 Adat2 "adenosine deaminase, tR 0.877 0.821 0.413 3.9e-28
UNIPROTKB|F1P565183 ADAT2 "Uncharacterized protein 0.888 0.868 0.402 3.2e-26
ZFIN|ZDB-GENE-041014-360239 adat2 "adenosine deaminase, tR 0.860 0.644 0.402 1.8e-25
RGD|1309642155 Adat2 "adenosine deaminase, tR 0.720 0.832 0.410 7e-22
FB|FBgn0038491160 CG5292 [Drosophila melanogaste 0.826 0.925 0.355 8e-21
TAIR|locus:505006173 emb2191 "embryo defective 2191" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 109/172 (63%), Positives = 125/172 (72%)

Query:     6 EEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXME 65
             E+   D+  +M  A+ QAKLAL++LEVPVGCV LEDGKVI                  ME
Sbjct:     3 EDHCEDSHNYMGFALHQAKLALEALEVPVGCVFLEDGKVIASGRNRTNETRNATRHAEME 62

Query:    66 AIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFG 125
             AID L+ QWQK+GLS S++AEKFSKC LYVTCEPCIMCA+ALS LGIKEVYYGC N+KFG
Sbjct:    63 AIDQLVGQWQKDGLSPSQVAEKFSKCVLYVTCEPCIMCASALSFLGIKEVYYGCPNDKFG 122

Query:   126 GCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPN 177
             GCGSILSLHL  S+    G     KG+KC GG+MA EAVSLF+ FYEQGNPN
Sbjct:   123 GCGSILSLHLG-SEEAQRG-----KGYKCRGGIMAEEAVSLFKCFYEQGNPN 168
GO:0003824 "catalytic activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016787 "hydrolase activity" evidence=IEA
UNIPROTKB|Q5E9J7 DEADC1 "tRNA-specific adenosine deaminase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9C9 ADAT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S713 ADAT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z6V5 ADAT2 "tRNA-specific adenosine deaminase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1914007 Adat2 "adenosine deaminase, tRNA-specific 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P565 ADAT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-360 adat2 "adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1309642 Adat2 "adenosine deaminase, tRNA-specific 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0038491 CG5292 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5E9J7ADAT2_BOVIN3, ., 5, ., 4, ., -0.49400.88260.8272yesno
Q6P6J0ADAT2_MOUSE3, ., 5, ., 4, ., -0.47610.88260.8272yesno
Q0P4H0ADAT2_XENTR3, ., 5, ., 4, ., -0.48190.84910.8941yesno
Q7Z6V5ADAT2_HUMAN3, ., 5, ., 4, ., -0.47610.88260.8272yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.4.1LOW CONFIDENCE prediction!
3rd Layer3.5.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 2e-41
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 3e-40
PRK10860172 PRK10860, PRK10860, tRNA-specific adenosine deamin 1e-20
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 1e-20
cd01284115 cd01284, Riboflavin_deaminase-reductase, Riboflavi 1e-09
COG0117146 COG0117, RibD, Pyrimidine deaminase [Coenzyme meta 2e-09
COG2131164 COG2131, ComEB, Deoxycytidylate deaminase [Nucleot 5e-09
cd01286131 cd01286, deoxycytidylate_deaminase, Deoxycytidylat 3e-07
TIGR00326 344 TIGR00326, eubact_ribD, riboflavin biosynthesis pr 3e-06
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 4e-06
PHA02588168 PHA02588, cd, deoxycytidylate deaminase; Provision 8e-06
TIGR02571151 TIGR02571, ComEB, ComE operon protein 2 1e-04
pfam14439113 pfam14439, Bd3614-deam, Bd3614-like deaminase 2e-04
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  136 bits (344), Expect = 2e-41
 Identities = 57/166 (34%), Positives = 80/166 (48%), Gaps = 19/166 (11%)

Query: 9   SPDTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAI 67
           S     FM  A+++AK A D  EVPVG VI+  DG++IA G NR  E  + T HAE+ AI
Sbjct: 5   SEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAI 64

Query: 68  DVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGC 127
                       +++    +   C LYVT EPC MCA A+    I  V YG ++ K G  
Sbjct: 65  ---------RAAAETLGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAI 115

Query: 128 GSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
           GS+L   +     LN          +  GG++  E  +L   F+ +
Sbjct: 116 GSLLD--ILKDPRLNH-------RVEVYGGILEEECSALLSEFFRR 152

Length = 152
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase Back     alignment and domain information
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain Back     alignment and domain information
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2 Back     alignment and domain information
>gnl|CDD|206605 pfam14439, Bd3614-deam, Bd3614-like deaminase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
PRK10860172 tRNA-specific adenosine deaminase; Provisional 100.0
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 100.0
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 100.0
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 100.0
cd01285109 nucleoside_deaminase Nucleoside deaminases include 100.0
PHA02588168 cd deoxycytidylate deaminase; Provisional 100.0
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 100.0
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 99.98
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 99.98
TIGR02571151 ComEB ComE operon protein 2. This protein is found 99.97
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.97
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.96
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.96
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.96
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.89
KOG2771344 consensus Subunit of tRNA-specific adenosine-34 de 99.85
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.79
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 99.72
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 99.43
PRK06848139 hypothetical protein; Validated 99.26
PF14439136 Bd3614-deam: Bd3614-like deaminase 99.26
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 99.12
PRK08298136 cytidine deaminase; Validated 99.1
PRK05578131 cytidine deaminase; Validated 99.04
PRK12411132 cytidine deaminase; Provisional 99.02
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 98.95
TIGR01355 283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 98.93
PLN02402 303 cytidine deaminase 98.76
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 98.75
PRK09027295 cytidine deaminase; Provisional 98.7
PLN02182 339 cytidine deaminase 98.54
PRK09027295 cytidine deaminase; Provisional 98.53
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 98.43
PLN02402303 cytidine deaminase 97.96
PF14437146 MafB19-deam: MafB19-like deaminase 97.34
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 97.03
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 96.06
PF14424133 Toxin-deaminase: The BURPS668_1122 family of deami 92.3
PF14440118 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase 91.19
PF08210188 APOBEC_N: APOBEC-like N-terminal domain; InterPro: 90.79
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.2e-43  Score=269.17  Aligned_cols=147  Identities=32%  Similarity=0.493  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCc
Q 030336           12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC   91 (179)
Q Consensus        12 ~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~   91 (179)
                      |+.||++|+++|+++...++.|||||||++|+||++|+|......+++.|||++||+++.+++..         +.+.++
T Consensus        13 ~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~---------~~l~g~   83 (172)
T PRK10860         13 HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQN---------YRLLDA   83 (172)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCC---------CCcCCc
Confidence            67899999999999998889999999999999999999998888899999999999999887653         356899


Q ss_pred             EEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHHHHHH
Q 030336           92 CLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFY  171 (179)
Q Consensus        92 ~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~~~f~  171 (179)
                      |||||+|||+||++||+|+||+||||+.++++.|+.++.+.+...+..         ++.++|++|++++||.+|++.||
T Consensus        84 tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~---------~~~i~v~~gv~~~e~~~ll~~ff  154 (172)
T PRK10860         84 TLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGM---------NHRVEITEGVLADECAALLSDFF  154 (172)
T ss_pred             EEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccC---------CCCCEEEeCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887765444322111         35689999999999999999999


Q ss_pred             HhcCC
Q 030336          172 EQGNP  176 (179)
Q Consensus       172 ~~~~~  176 (179)
                      ++.++
T Consensus       155 ~~~~~  159 (172)
T PRK10860        155 RMRRQ  159 (172)
T ss_pred             HHHhh
Confidence            87553

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification] Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases Back     alignment and domain information
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase Back     alignment and domain information
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
3dh1_A189 Crystal Structure Of Human Trna-Specific Adenosine- 4e-31
2nx8_A179 The Crystal Structure Of The Trna-Specific Adenosin 1e-15
2a8n_A144 Biochemical And Structural Studies Of A-To-I Editin 3e-11
2b3j_A159 Crystal Structure Of Staphylococcus Aureus Trna Ade 5e-11
1wwr_A171 Crystal Structure Of Trna Adenosine Deaminase Tada 3e-10
1z3a_A168 Crystal Structure Of Trna Adenosine Deaminase Tada 9e-10
3ocq_A183 Crystal Structure Of Trna-Specific Adenosine Deamin 2e-08
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34 Deaminase Subunit Adat2 Length = 189 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 10/168 (5%)
Query: 11  DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVL 70
           +T  +M+ A+  AK AL++ EVPVGC+++ + +V+                  M AID +
Sbjct: 25  ETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 84
Query: 71  LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
           LD  +++G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+
Sbjct: 85  LDWCRQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 141
Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNG 178
           L++  +D  + N+G     + F+C  G  A EAV + ++FY+Q NPN 
Sbjct: 142 LNIASAD--LPNTG-----RPFQCIPGYRAEEAVEMLKTFYKQENPNA 182
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 Back     alignment and structure
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By Trna:a34 Deaminases At The Wobble Position Of Transfer Rna Length = 144 Back     alignment and structure
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 Back     alignment and structure
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 Back     alignment and structure
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 Back     alignment and structure
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 4e-65
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 6e-43
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 2e-41
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 2e-41
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 3e-41
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 6e-41
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 2e-40
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 6e-35
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 5e-34
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 7e-11
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 1e-10
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 3e-09
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 1e-08
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 1e-08
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 1e-07
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
 Score =  197 bits (502), Expect = 4e-65
 Identities = 78/163 (47%), Positives = 111/163 (68%), Gaps = 10/163 (6%)

Query: 15  FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
           +M+ A+  AK AL++ EVPVGC+++ + +V+  GRN   +T+NATRHAEM AID +LD  
Sbjct: 29  WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88

Query: 75  QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
           +++G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+L++ 
Sbjct: 89  RQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIA 145

Query: 135 LSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPN 177
              + + N+G     + F+C  G  A EAV + ++FY+Q NPN
Sbjct: 146 --SADLPNTG-----RPFQCIPGYRAEEAVEMLKTFYKQENPN 181
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 100.0
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 100.0
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 100.0
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 100.0
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 100.0
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 100.0
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 100.0
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 100.0
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 100.0
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 100.0
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 100.0
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 100.0
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 100.0
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 100.0
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.98
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 99.93
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.83
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.76
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.71
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.7
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 99.51
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 99.47
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 99.46
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 99.43
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 99.25
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 99.22
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 99.09
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 99.08
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 99.04
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.6
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.48
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 95.48
3vow_A190 Probable DNA DC->DU-editing enzyme apobec-3C; anti 94.91
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.4e-45  Score=284.55  Aligned_cols=156  Identities=49%  Similarity=0.860  Sum_probs=132.1

Q ss_pred             HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336           10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS   89 (179)
Q Consensus        10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~   89 (179)
                      .+|+.||++|+++|+++...+++|||||||+||+||+.|+|.+.+..+++.|||++||+++.+.....+++.   .+.+.
T Consensus        24 ~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~---~~~l~  100 (189)
T 3dh1_A           24 EETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSP---SEVFE  100 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCH---HHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCccc---ccccC
Confidence            468999999999999999888999999999999999999998777789999999999999987654333221   13579


Q ss_pred             CcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCC--cCcEEecCCcHHHHHHHH
Q 030336           90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGR--KGFKCTGGVMASEAVSLF  167 (179)
Q Consensus        90 ~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~--~~i~v~~gvl~~e~~~l~  167 (179)
                      ++|||||+|||+||++||+|+||+||||+..+|+.|+.|+.+.+..         ..+..  +.++|++|+|++||.+|+
T Consensus       101 g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~---------~~l~~~gh~ieV~~Gvl~~e~~~Ll  171 (189)
T 3dh1_A          101 HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIAS---------ADLPNTGRPFQCIPGYRAEEAVEML  171 (189)
T ss_dssp             TEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTT---------CCCTTSSCCCEEECCTTHHHHHHHH
T ss_pred             CeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchh---------hHHHHcCCCeEEEeCccHHHHHHHH
Confidence            9999999999999999999999999999999999999887777653         22333  449999999999999999


Q ss_pred             HHHHHhcCCC
Q 030336          168 RSFYEQGNPN  177 (179)
Q Consensus       168 ~~f~~~~~~~  177 (179)
                      +.||++.+++
T Consensus       172 ~~Ff~~~~~~  181 (189)
T 3dh1_A          172 KTFYKQENPN  181 (189)
T ss_dssp             HHHTCC----
T ss_pred             HHHHHHhcCC
Confidence            9999987764
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 179
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 2e-36
d1wwra1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 4e-25
d2a8na1130 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de 2e-21
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 4e-21
d1z3aa1156 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA 6e-21
d1p6oa_156 c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S 2e-20
d2b3ja1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 7e-17
d2b3za2145 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein 3e-15
d2hxva2147 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein 1e-10
d1vq2a_193 c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop 4e-10
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]

 Score =  122 bits (308), Expect = 2e-36
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 11/169 (6%)

Query: 10  PDTLAFMDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAI 67
               A M   ++  +  + +   P    +   + G +IAAG NR    R +  HAE+ A+
Sbjct: 24  AAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILAL 83

Query: 68  DVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGC 127
                  Q    +    A+    C L  + EPC+MC  A+   G++ +     ++     
Sbjct: 84  S----LAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAI 139

Query: 128 GSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNP 176
           G        +         L  +G   T G++   A +L R +      
Sbjct: 140 GFDEGPRPENWM-----GGLEARGITVTTGLLRDAACALLREYNACNGV 183
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 100.0
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 100.0
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 100.0
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 100.0
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 100.0
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 100.0
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 100.0
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 100.0
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 100.0
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.97
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 99.2
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 99.18
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 99.18
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 99.11
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 99.01
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 98.94
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 98.87
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-44  Score=273.32  Aligned_cols=153  Identities=31%  Similarity=0.472  Sum_probs=133.4

Q ss_pred             CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhh
Q 030336            7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE   86 (179)
Q Consensus         7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~   86 (179)
                      ++.-+|++||++|+++|+++...+++|||||||+||+||+.|+|.+....+++.|||+.||+++..++..         .
T Consensus         2 ~~~~~~e~~M~~Ai~~A~~a~~~~~~pvGaViv~~g~Iia~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~---------~   72 (156)
T d1z3aa1           2 EVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQN---------Y   72 (156)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------S
T ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCEEEEEEECCeEEEEeeccccccCcchhhHHHHhHHHHHhhccc---------c
Confidence            4556899999999999999999999999999999999999999998888899999999999999888764         3


Q ss_pred             ccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHH
Q 030336           87 KFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSL  166 (179)
Q Consensus        87 ~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l  166 (179)
                      .+.++++|+|+|||+||++||+|+||+|||||..+++.++.|+...+...+..         ++.++|.+|||++||.+|
T Consensus        73 ~l~~~~lytT~ePC~mC~~aii~~gI~rVvyg~~d~~~~~~g~~~~~l~~~~~---------~~~ieV~~gvl~ee~~~l  143 (156)
T d1z3aa1          73 RLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM---------NHRVEITEGILADECAAL  143 (156)
T ss_dssp             CCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTC---------SSCCEEECCTTHHHHHHH
T ss_pred             cccCceeeeccccccchhhHHHHhCCceEEEEeecCCCcccCcHHHHHHhCCC---------CCCcEEEeCcCHHHHHHH
Confidence            57899999999999999999999999999999999998887754444332211         245899999999999999


Q ss_pred             HHHHHHhcCCC
Q 030336          167 FRSFYEQGNPN  177 (179)
Q Consensus       167 ~~~f~~~~~~~  177 (179)
                      ++.||+.++.|
T Consensus       144 l~~Ff~~~r~~  154 (156)
T d1z3aa1         144 LSDFFRMRRQE  154 (156)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            99999866543
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure