Citrus Sinensis ID: 030353

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSRCCLIHWNLAKKCDKYTHMLRLQVHKQI
Secondary Structure (PSIPRED)
cccccHHccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccHHHcEEEEEEEEcc
Coil and Loop (DISEMBL)
msfqdleagvrvppqnpfnaaKRKQQqqnqsqsqdPSQAVAAAIFQINTAVSSFYRLVnslgtpkdtLDLRDKLHKTRLHIGQLVKDTSSklkqaseadhhtevspirKIADAKLAKDFQSVLKEFQKAQRLAAErettyapfvpkeslssrcclihwnlakkcdkytHMLRLQVHKQI
Flexible Loop (DISEMBL)
msfqdleagvrvppQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTrlhigqlvkdtssklkqaseadhhtevspirKIADAKLAKDFQSVLKEFQKAQRLAAErettyapfvpkeslssrCCLIHWNLAKKCDKYTHMLRLQVHKQI
Low Complexity Region (SEG)
MSFQDLEAGVRVPPQNPFNAAKRKqqqqnqsqsqdpsqAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSRCCLIHWNLAKKCDKYTHMLRLQVHKQI
Disordered region (IsUnstruct)
***************************************VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQL******************************LAKDFQSVLKEFQ****LAAERETTYAPFVPKESLSSRCCLIHWNLAKKCDKYTHMLRLQ*****
Disordered Region (DISOPRED)
MSFQD********************************QAVAAAIFQINTAVSSFYRLV****************HKTRLHIGQLVKD**S***********************KLAKDFQSVLKEFQKA**************************************************
Disordered Region (DISEMBL)
MSFQDLEAGVRVPPQNPF*********************VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDT****************SPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSRCCLIHWNLAKKCDKYTHMLRLQVHKQI
Disordered Region (DISPRO)
*****************************QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSRCCLIHWNLAKKCDKYTHMLRLQVHKQI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSRCCLIHWNLAKKCDKYTHMLRLQVHKQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q39233	279	Syntaxin-21 OS=Arabidopsi	yes	no	0.798	0.512	0.707	3e-52
P93654	268	Syntaxin-22 OS=Arabidopsi	no	no	0.776	0.518	0.662	1e-50
O04378	255	Syntaxin-23 OS=Arabidopsi	no	no	0.804	0.564	0.649	2e-46
Q9C615	416	Putative syntaxin-24 OS=A	no	no	0.430	0.185	0.649	1e-21
Q3ZBT5	261	Syntaxin-7 OS=Bos taurus	yes	no	0.687	0.471	0.313	1e-07
Q5R602	261	Syntaxin-7 OS=Pongo abeli	yes	no	0.648	0.444	0.336	1e-07
O15400	261	Syntaxin-7 OS=Homo sapien	yes	no	0.653	0.448	0.333	4e-07
Q96NA8	513	t-SNARE domain-containing	no	no	0.469	0.163	0.333	8e-07
Q54JY7	356	Syntaxin-7A OS=Dictyostel	yes	no	0.597	0.300	0.321	3e-06
O70257	261	Syntaxin-7 OS=Rattus norv	yes	no	0.648	0.444	0.344	6e-06

>sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1

 Score =  204 bits (519), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 116/147 (78%), Gaps = 4/147 (2%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG R P  N F   +    QQ  S   DPSQ VAA IF+I+TAV+SF+RLVNS
Sbjct: 1   MSFQDLEAGTRSPAPNRFTGGR----QQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNS 56

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H   S I+KIADAKLAKDFQ
Sbjct: 57  IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
           SVLKEFQKAQRLAAERE TY P V KE
Sbjct: 117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

May function in the docking or fusion of transport vesicles with the prevacuolar membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/151 (66%), Positives = 118/151 (78%), Gaps = 12/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLE+G R      FN  +           QD +QAVA+ IFQINT VS+F RLVN+
Sbjct: 1   MSFQDLESG-RGRSTRKFNGGR-----------QDSTQAVASGIFQINTGVSTFQRLVNT 48

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLK+ASE DH + V+P +KIADAKLA+DFQ
Sbjct: 49  LGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQ 108

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQ+ AAERETTY PFVP+ +L S
Sbjct: 109 AVLKEFQKAQQTAAERETTYTPFVPQSALPS 139

May provide the t-SNARE function in the vacuolar assembly.

Arabidopsis thaliana (taxid: 3702)

>sp|O04378|SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1

 Score =  185 bits (469), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/151 (64%), Positives = 113/151 (74%), Gaps = 7/151 (4%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG      +  N              QD +Q VA+ IFQINT+VS+F+RLVN+
Sbjct: 1   MSFQDLEAGRGRSLASSRNI-------NGGGSRQDTTQDVASGIFQINTSVSTFHRLVNT 53

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTRL+IGQLVKDTS+KLK+ASE DH   V+  +KI DAKLAKDFQ
Sbjct: 54  LGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQ 113

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET YAP V K SL S
Sbjct: 114 AVLKEFQKAQRLAAERETVYAPLVHKPSLPS 144

May function in the docking or fusion of transport vesicles with the prevacuolar membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 75  HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134
           HK  L IGQLVKDTS+ L++ASE DH  +V+  +KIADAKLAKDF++ LKEFQKAQ +  
Sbjct: 154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITV 213

Query: 135 ERETTYAPFVPKESLSS 151
           ERET+Y PF PK S SS
Sbjct: 214 ERETSYIPFDPKGSFSS 230

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 35  DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
           DP+Q    +++ I +I    +   R +N LGTP+D+ +LR +L + + +  QL K+T   
Sbjct: 10  DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKY 69

Query: 92  LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFV------- 144
           +K+             RKI   +L  +F + L  FQK QR AAERE  +   V       
Sbjct: 70  IKEFGSLPTTPSDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAEREKEFVARVRASSRVS 129

Query: 145 ---PKESLSSRCCLIHW 158
              P+ES   R  L+ W
Sbjct: 130 GGFPEESSKER-NLVSW 145

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Bos taurus (taxid: 9913)

>sp|Q5R602|STX7_PONAB Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 35  DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
           DP+Q    +++ I +I    +   R +N LGTP+D+ +LR +L + + +  QL K+T   
Sbjct: 10  DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLTKETDKY 69

Query: 92  LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +K+             RKI   +L  +F + L  FQK QR AAERE     FV +   SS
Sbjct: 70  IKEFGSLPTTPSEQRQRKIQKDRLVGEFTTSLTNFQKVQRQAAERE---KEFVARVRASS 126

Query: 152 RC 153
           R 
Sbjct: 127 RV 128

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Pongo abelii (taxid: 9601)

>sp|O15400|STX7_HUMAN Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 35  DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
           DP+Q    +++ I +I        R +N LGTP+D+ +LR +L + + +  QL K+T   
Sbjct: 10  DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKY 69

Query: 92  LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +K+             RKI   +L  +F + L  FQK QR AAERE     FV +   SS
Sbjct: 70  IKEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAERE---KEFVARVRASS 126

Query: 152 RCC 154
           R  
Sbjct: 127 RVS 129

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q96NA8|TSNA1_HUMAN t-SNARE domain-containing protein 1 OS=Homo sapiens GN=TSNARE1 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 14  PQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDK 73
           P   F+    +  Q +    Q+  Q ++A +F+IN++V+S  R + SLGTP DT +LRD 
Sbjct: 238 PSEGFSLEPPRATQVDPCNLQELFQEMSANVFRINSSVTSLERSLQSLGTPSDTQELRDS 297

Query: 74  LHKTRLHIGQLVKDTSSKLKQASE 97
           LH  +    + +  ++S +KQ +E
Sbjct: 298 LHTAQQETNKTIAASASSVKQMAE 321

Homo sapiens (taxid: 9606)

>sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 38  QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97
           Q+    I QI  AV    +LV  LGTPKD++D R+K+         L+   S K+K  + 
Sbjct: 89  QSTTRNIQQIQNAVQILTKLVQLLGTPKDSMDTREKIRNCVDSTTHLISSESGKVKNLTS 148

Query: 98  ADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE-TTYAPFVP 145
               +  S   K+   KL K+F + L++F+   ++A ++E TT  P  P
Sbjct: 149 LASRSRDSK-NKLLYQKLVKEFNNCLQQFKDIAQVATKKEKTTPLPVAP 196

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for fusion of late endosomes with lysosomes and homotypic lysosomal fusion. May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles.

Dictyostelium discoideum (taxid: 44689)

>sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 35  DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
           DP+Q    +++ I +I    +   R +N LGTP+DT +LR +L + + +  QL K+T   
Sbjct: 10  DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKY 69

Query: 92  LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +K+             RKI   +L  +F + L  FQK QR AAERE     FV +   SS
Sbjct: 70  IKEFGFLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAERE---KEFVARVRASS 126

Query: 152 RC 153
           R 
Sbjct: 127 RV 128

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
225454757	278	PREDICTED: syntaxin-22 [Vitis vinifera]	0.810	0.521	0.715	1e-54
356559009	273	PREDICTED: syntaxin-22-like [Glycine max	0.782	0.512	0.708	2e-52
351723149	273	syntaxin [Glycine max] gi|22597174|gb|AA	0.782	0.512	0.701	2e-51
255636806	273	unknown [Glycine max]	0.782	0.512	0.701	2e-51
225427138	274	PREDICTED: syntaxin-22 [Vitis vinifera]	0.787	0.514	0.701	4e-51
76573305	273	syntaxin-like protein [Solanum tuberosum	0.782	0.512	0.688	7e-51
21595750	279	syntaxin homologue [Arabidopsis thaliana	0.798	0.512	0.707	1e-50
15237418	279	syntaxin-21 [Arabidopsis thaliana] gi|25	0.798	0.512	0.707	1e-50
449462039	274	PREDICTED: syntaxin-22-like [Cucumis sat	0.787	0.514	0.688	2e-50
297811825	280	hypothetical protein ARALYDRAFT_488543 [	0.798	0.510	0.707	2e-50

>gi|225454757|ref|XP_002274100.1| PREDICTED: syntaxin-22 [Vitis vinifera] gi|297737303|emb|CBI26504.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/151 (71%), Positives = 124/151 (82%), Gaps = 6/151 (3%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSF+DLE G   P Q+P   A +++++       D SQAVAA +F+INTAVS+FYRLVNS
Sbjct: 1   MSFEDLEWGRTRPGQSPLALATKRREED------DSSQAVAAGVFRINTAVSAFYRLVNS 54

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDTL+LR+KLHKTRLHIGQLVKDTS+KLKQASE D HTEVS  ++IADAKLAKDFQ
Sbjct: 55  LGTPKDTLELREKLHKTRLHIGQLVKDTSAKLKQASENDQHTEVSASKRIADAKLAKDFQ 114

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLA ERET Y PFVPKE L S
Sbjct: 115 AVLKEFQKAQRLAVERETAYTPFVPKEVLPS 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559009|ref|XP_003547794.1| PREDICTED: syntaxin-22-like [Glycine max]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 121/151 (80%), Gaps = 11/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF + +     +     QDP+QAVAA IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDIEAG------RPFGSRRGLMNGK-----QDPTQAVAAGIFQINTAVSTFQRLVNT 49

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDTLDLR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 50  LGTPKDTLDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 109

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 110 AVLKEFQKAQRLAAERETAYTPFVPQAVLPS 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723149|ref|NP_001235989.1| syntaxin [Glycine max] gi|22597174|gb|AAN03474.1| syntaxin [Glycine max]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 120/151 (79%), Gaps = 11/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF + +     +     QDP+QAVAA IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDIEAG------RPFGSRRGLMNGK-----QDPTQAVAAGIFQINTAVSTFQRLVNT 49

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT DLR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 50  LGTPKDTPDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 109

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 110 AVLKEFQKAQRLAAERETAYTPFVPQAVLPS 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636806|gb|ACU18736.1| unknown [Glycine max]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 121/151 (80%), Gaps = 11/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF++ +     +     QDP+QAVAA IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDIEAG------RPFSSRRGLMNGK-----QDPTQAVAAGIFQINTAVSTFQRLVNT 49

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT DLR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 50  LGTPKDTPDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 109

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 110 AVLKEFQKAQRLAAERETAYTPFVPQAVLPS 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427138|ref|XP_002278649.1| PREDICTED: syntaxin-22 [Vitis vinifera] gi|147791633|emb|CAN75135.1| hypothetical protein VITISV_018887 [Vitis vinifera] gi|297742058|emb|CBI33845.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 120/151 (79%), Gaps = 10/151 (6%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLE+G       P   ++R       +  QDP+QAVA+ IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDLESG------RPLAQSRRDYI----NAKQDPTQAVASGIFQINTAVSTFQRLVNT 50

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLKQASE DHH EVS  +KIADAKLAKDFQ
Sbjct: 51  LGTPKDTSELREKLHKTRLHIGQLVKDTSAKLKQASETDHHAEVSASKKIADAKLAKDFQ 110

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 111 AVLKEFQKAQRLAAERETAYTPFVPQSVLPS 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573305|gb|ABA46757.1| syntaxin-like protein [Solanum tuberosum]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 118/151 (78%), Gaps = 11/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG  + P+  +   K           QDP+QAVA+ IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDLEAGRPLGPRRGYMNGK-----------QDPTQAVASGIFQINTAVSTFQRLVNT 49

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTR+HIGQLVKDTS+KLKQASE DH  EVS  +KI DAKLAKDFQ
Sbjct: 50  LGTPKDTPELREKLHKTRVHIGQLVKDTSAKLKQASETDHRVEVSASKKITDAKLAKDFQ 109

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 110 AVLKEFQKAQRLAAERETAYTPFVPQAVLPS 140

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595750|gb|AAM66128.1| syntaxin homologue [Arabidopsis thaliana]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 116/147 (78%), Gaps = 4/147 (2%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG R P  N F   +    QQ  S   DPSQ VAA IF+I+TAV+SF+RLVNS
Sbjct: 1   MSFQDLEAGTRSPTPNRFTGGR----QQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNS 56

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H   S I+KIADAKLAKDFQ
Sbjct: 57  IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
           SVLKEFQKAQRLAAERE TY P V KE
Sbjct: 117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237418|ref|NP_197185.1| syntaxin-21 [Arabidopsis thaliana] gi|2501101|sp|Q39233.1|SYP21_ARATH RecName: Full=Syntaxin-21; Short=AtSYP21; AltName: Full=PEP12 homolog; Short=AtPEP12; AltName: Full=aPEP12 gi|15724189|gb|AAL06486.1|AF411797_1 AT5g16830/F5E19_170 [Arabidopsis thaliana] gi|899122|gb|AAA87296.1| syntaxin of plants 21 [Arabidopsis thaliana] gi|9755735|emb|CAC01847.1| syntaxin homologue [Arabidopsis thaliana] gi|90962974|gb|ABE02411.1| At5g16830 [Arabidopsis thaliana] gi|332004962|gb|AED92345.1| syntaxin-21 [Arabidopsis thaliana]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 116/147 (78%), Gaps = 4/147 (2%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG R P  N F   +    QQ  S   DPSQ VAA IF+I+TAV+SF+RLVNS
Sbjct: 1   MSFQDLEAGTRSPAPNRFTGGR----QQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNS 56

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H   S I+KIADAKLAKDFQ
Sbjct: 57  IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
           SVLKEFQKAQRLAAERE TY P V KE
Sbjct: 117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462039|ref|XP_004148749.1| PREDICTED: syntaxin-22-like [Cucumis sativus]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 122/151 (80%), Gaps = 10/151 (6%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF +++R       +  QDP+QAVA+ IFQINTAV++F RLVN+
Sbjct: 1   MSFQDIEAG------RPFASSRRDLI----NGKQDPTQAVASGIFQINTAVATFQRLVNT 50

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 51  LGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 110

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y+PFVP   L S
Sbjct: 111 AVLKEFQKAQRLAAERETAYSPFVPPTVLPS 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811825|ref|XP_002873796.1| hypothetical protein ARALYDRAFT_488543 [Arabidopsis lyrata subsp. lyrata] gi|297319633|gb|EFH50055.1| hypothetical protein ARALYDRAFT_488543 [Arabidopsis lyrata subsp. lyrata]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 116/147 (78%), Gaps = 4/147 (2%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG R    N F   +    QQ  S   DPSQ VAA IF+I+TAV+SF+RLVNS
Sbjct: 1   MSFQDLEAGTRFQTPNRFTGGR----QQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNS 56

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H E S I+KIADAKLAKDFQ
Sbjct: 57  IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGETSQIKKIADAKLAKDFQ 116

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
           SVLKEFQKAQRLAAERE TY P V KE
Sbjct: 117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2148960	279	SYP21 "syntaxin of plants 21"	0.798	0.512	0.659	7.3e-43
TAIR|locus:3356150	268	VAM3 "VACUOLAR MORPHOLOGY 3" [	0.776	0.518	0.642	7.3e-43
TAIR|locus:2129406	262	SYP23 "syntaxin of plants 23"	0.804	0.549	0.635	1.6e-40
TAIR|locus:2028336	416	ATSYP24 [Arabidopsis thaliana	0.430	0.185	0.649	3.2e-21
RGD|619747	261	Stx7 "syntaxin 7" [Rattus norv	0.614	0.421	0.345	1.2e-10
UNIPROTKB|Q3ZBT5	261	STX7 "Syntaxin-7" [Bos taurus	0.614	0.421	0.336	3.6e-10
UNIPROTKB|Q5ZMP2	258	STX7 "Uncharacterized protein"	0.608	0.422	0.327	4.5e-10
UNIPROTKB|F1S3P8	261	STX7 "Uncharacterized protein"	0.614	0.421	0.336	4.7e-10
MGI|MGI:1858210	261	Stx7 "syntaxin 7" [Mus musculu	0.614	0.421	0.345	4.7e-10
UNIPROTKB|O15400	261	STX7 "Syntaxin-7" [Homo sapien	0.614	0.421	0.336	6.1e-10

TAIR|locus:2148960 SYP21 "syntaxin of plants 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 97/147 (65%), Positives = 111/147 (75%)

Query:     1 MSFQDLEAGVRVPPQNPFNAAKRKXXXXXXXXXXXXXXAVAAAIFQINTAVSSFYRLVNS 60
             MSFQDLEAG R P  N F   +++               VAA IF+I+TAV+SF+RLVNS
Sbjct:     1 MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQE----VAAGIFRISTAVNSFFRLVNS 56

Query:    61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
             +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H   S I+KIADAKLAKDFQ
Sbjct:    57 IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116

Query:   121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
             SVLKEFQKAQRLAAERE TY P V KE
Sbjct:   117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

GO:0005484 "SNAP receptor activity" evidence=IEA;IMP;IDA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006896 "Golgi to vacuole transport" evidence=TAS

GO:0005770 "late endosome" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA;TAS

GO:0016020 "membrane" evidence=IDA

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=RCA;IDA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:3356150 VAM3 "VACUOLAR MORPHOLOGY 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 97/151 (64%), Positives = 115/151 (76%)

Query:     1 MSFQDLEAGVRVPPQNPFNAAKRKXXXXXXXXXXXXXXAVAAAIFQINTAVSSFYRLVNS 60
             MSFQDLE+G R      FN  ++               AVA+ IFQINT VS+F RLVN+
Sbjct:     1 MSFQDLESG-RGRSTRKFNGGRQDSTQ-----------AVASGIFQINTGVSTFQRLVNT 48

Query:    61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
             LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLK+ASE DH + V+P +KIADAKLA+DFQ
Sbjct:    49 LGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQ 108

Query:   121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
             +VLKEFQKAQ+ AAERETTY PFVP+ +L S
Sbjct:   109 AVLKEFQKAQQTAAERETTYTPFVPQSALPS 139

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005770 "late endosome" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009660 "amyloplast organization" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0010118 "stomatal movement" evidence=IMP

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=IGI;RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0009959 "negative gravitropism" evidence=IMP

TAIR|locus:2129406 SYP23 "syntaxin of plants 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 96/151 (63%), Positives = 111/151 (73%)

Query:     1 MSFQDLEAGVRVPPQNPFNAAKRKXXXXXXXXXXXXXXAVAAAIFQINTAVSSFYRLVNS 60
             MSFQDLEAG     +    A+ R                VA+ IFQINT+VS+F+RLVN+
Sbjct:     1 MSFQDLEAG-----RGRSLASSRNINGGGSRQDTTQD--VASGIFQINTSVSTFHRLVNT 53

Query:    61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
             LGTPKDT +LR+KLHKTRL+IGQLVKDTS+KLK+ASE DH   V+  +KI DAKLAKDFQ
Sbjct:    54 LGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQ 113

Query:   121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
             +VLKEFQKAQRLAAERET YAP V K SL S
Sbjct:   114 AVLKEFQKAQRLAAERETVYAPLVHKPSLPS 144

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2028336 ATSYP24 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query:    75 HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134
             HK  L IGQLVKDTS+ L++ASE DH  +V+  +KIADAKLAKDF++ LKEFQKAQ +  
Sbjct:   154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITV 213

Query:   135 ERETTYAPFVPKESLSS 151
             ERET+Y PF PK S SS
Sbjct:   214 ERETSYIPFDPKGSFSS 230

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=ISS;RCA

GO:0016021 "integral to membrane" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

RGD|619747 Stx7 "syntaxin 7" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 39/113 (34%), Positives = 58/113 (51%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I    +   R +N LGTP+DT +LR +L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKYIKEFGFLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQK QR AAERE     FV +   SSR
Sbjct:    78 TTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKE---FVARVRASSR 127

GO:0000149 "SNARE binding" evidence=IPI

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IDA

GO:0032403 "protein complex binding" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q3ZBT5 STX7 "Syntaxin-7" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 38/113 (33%), Positives = 58/113 (51%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I    +   R +N LGTP+D+ +LR +L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQK QR AAERE     FV +   SSR
Sbjct:    78 TTPSDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAEREKE---FVARVRASSR 127

GO:0031201 "SNARE complex" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0000149 "SNARE binding" evidence=IBA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5ZMP2 STX7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 37/113 (32%), Positives = 60/113 (53%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             + + I +I    +   R++N LGTP+DT +LR +L + + +  QL K+T   +K+     
Sbjct:    17 ITSNIQKITQCSAEIQRILNQLGTPQDTHELRQQLQQKQQYTNQLAKETDKYIKEFGSLP 76

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
               +E    +KI   +L  +F + L  FQ+ QR AAE+E     FV +   SSR
Sbjct:    77 ATSEQRQ-KKIQKDRLVGEFTTALTNFQRLQRQAAEKEKD---FVARVRASSR 125

GO:0000149 "SNARE binding" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0031201 "SNARE complex" evidence=IBA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F1S3P8 STX7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 146 (56.5 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 38/113 (33%), Positives = 57/113 (50%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I        R +N LGTP+DT +LR +L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSVEIQRTLNQLGTPQDTPELRQQLQQKQQYTNQLAKETDKYIKEFGSLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQK QR AAE+E     FV +   SSR
Sbjct:    78 TTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKE---FVARVRASSR 127

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

MGI|MGI:1858210 Stx7 "syntaxin 7" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 39/113 (34%), Positives = 57/113 (50%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I        R +N LGTP+D+ +LR  L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQLLQQKQQYTNQLAKETDKYIKEFGSLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQKAQR AAERE     FV +   SSR
Sbjct:    78 TTPSEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKE---FVARVRASSR 127

GO:0000149 "SNARE binding" evidence=ISO;IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0006906 "vesicle fusion" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO;IBA

GO:0031902 "late endosome membrane" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|O15400 STX7 "Syntaxin-7" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 38/113 (33%), Positives = 57/113 (50%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I        R +N LGTP+D+ +LR +L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQK QR AAERE     FV +   SSR
Sbjct:    78 TTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKE---FVARVRASSR 127

GO:0016021 "integral to membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0000149 "SNARE binding" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0031201 "SNARE complex" evidence=IBA

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39233	SYP21_ARATH	No assigned EC number	0.7074	0.7988	0.5125	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
cd00179	151	cd00179, SynN, Syntaxin N-terminus domain; syntaxi	3e-24
smart00503	117	smart00503, SynN, Syntaxin N-terminal domain	3e-19
pfam00804	103	pfam00804, Syntaxin, Syntaxin	7e-05

>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

 Score = 92.3 bits (230), Expect = 3e-24
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 34  QDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKL 92
            +  + +   I +I+  V    +L + L T  D    L+ +L      I +L K+   KL
Sbjct: 5   FEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKL 64

Query: 93  KQASEADHHTEVSP------IRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPK 146
           K+  E++   E         IRK   + L+K F  V+ EF KAQR   ER         +
Sbjct: 65  KELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLE 124

Length = 151

>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain

 Score = 78.5 bits (194), Expect = 3e-19
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 34  QDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKL 92
            +  + + A I +I+  V+   +L   L TP D   +LR+KL +    I +L K+  +KL
Sbjct: 7   FEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKL 66

Query: 93  KQASEADH-----HTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE 137
           K+  + +       +     RK    KL K F+ V+ EFQ+ QR   ERE
Sbjct: 67  KELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p. Length = 117

>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 34  QDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKL 92
            D  + +   I +I   +    +L   + T  D+   LR++L +    I QL +    KL
Sbjct: 6   FDEVEEIREEIQKIRQNLEELQKLHKRILTAPDSDKELREELEELTQEIKQLARAIKKKL 65

Query: 93  KQASE-------ADHHTEVSPIRKIADAKLAKDFQSVL 123
           K   +         H + V  IRK   A L+K F+ VL
Sbjct: 66  KSLQQLNKSEQGLGHSSAVDRIRKNQLANLSKKFKDVL 103

Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (pfam05739), and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A it is found as three alpha-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role. The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PF14523	102	Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.	99.93
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	99.83
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	99.7
cd00179	151	SynN Syntaxin N-terminus domain; syntaxins are ner	99.68
PF00804	103	Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins	98.03
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	94.01
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	93.58

>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A

Probab=99.93  E-value=3.1e-25  Score=162.57  Aligned_cols=102  Identities=38%  Similarity=0.597  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHH
Q 030353           40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDF  119 (179)
Q Consensus        40 Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~~eKL~~dF  119 (179)
                      |+++||+||++|++|+++++.|||++|+++||++|+.++++|++|+++|+..|++|..+......++.++++.+||.+||
T Consensus         1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df   80 (102)
T PF14523_consen    1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDF   80 (102)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999222367888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 030353          120 QSVLKEFQKAQRLAAERETTYA  141 (179)
Q Consensus       120 ~~aL~~FQ~~Qr~~aekek~~~  141 (179)
                      +.+|++||++|+.|++++++++
T Consensus        81 ~~~l~~fq~~q~~~~~~~k~~~  102 (102)
T PF14523_consen   81 KEALQEFQKAQRRYAEKEKQTP  102 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999864

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.3e-19  Score=154.57  Aligned_cols=114  Identities=44%  Similarity=0.511  Sum_probs=106.3

Q ss_pred             CCcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHH
Q 030353           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRK  109 (179)
Q Consensus        30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k  109 (179)
                      ..+|..|...|+.+||.|+.++.+|.|++..|||+.|+++||++||.....++.++|+|+..|+++.++.. .+..+.++
T Consensus        16 ~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-~~~~~~~k   94 (269)
T KOG0811|consen   16 PFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-ESDLRQLK   94 (269)
T ss_pred             CCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999987 35568899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 030353          110 IADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVP  145 (179)
Q Consensus       110 ~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~~ar  145 (179)
                      ++++||++||..+|++||.+|+++++++| ....|+
T Consensus        95 ~~~~kL~~ef~~~l~efq~vQrk~ae~ek-~~~~a~  129 (269)
T KOG0811|consen   95 IQLDKLVDEFSAALKEFQKVQRKSAEREK-IPMVAR  129 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhc-cccccc
Confidence            99999999999999999999999999999 333444

>smart00503 SynN Syntaxin N-terminal domain

Probab=99.70  E-value=4e-16  Score=115.89  Aligned_cols=109  Identities=31%  Similarity=0.428  Sum_probs=99.3

Q ss_pred             CCcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----CC
Q 030353           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT-LDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH-----TE  103 (179)
Q Consensus        30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt-~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~-----~~  103 (179)
                      .|+|...++.|..+|+.|+++|..|+++...++++.|. +.++++|+.++..|+.++++|+..|+.|......     .+
T Consensus         3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~   82 (117)
T smart00503        3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSA   82 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCH
Confidence            46899999999999999999999999999999999986 6899999999999999999999999999987531     13


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030353          104 VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERET  138 (179)
Q Consensus       104 ~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek  138 (179)
                      +++.++.+.++|.++|+.++.+||.+|+.|.++.|
T Consensus        83 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k  117 (117)
T smart00503       83 SDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK  117 (117)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            56789999999999999999999999999998764

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

Probab=99.68  E-value=4.5e-16  Score=120.71  Aligned_cols=113  Identities=28%  Similarity=0.364  Sum_probs=103.9

Q ss_pred             CcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC------CC
Q 030353           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKD-TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH------TE  103 (179)
Q Consensus        31 ~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kD-t~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~------~~  103 (179)
                      |+|..+++.|..+|+.|+.+|+.|+++...+||..| .+.+|.+|+.+...|+.+++.+...|+.|......      .+
T Consensus         2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~   81 (151)
T cd00179           2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSS   81 (151)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH
Confidence            679999999999999999999999999999999998 88999999999999999999999999999986431      12


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 030353          104 VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPF  143 (179)
Q Consensus       104 ~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~~  143 (179)
                      ..+.++.+.++|.++|+.++++||.+|+.|.++.|..+.+
T Consensus        82 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~R  121 (151)
T cd00179          82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQR  121 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667899999999999999999999999999999888874

>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane

Probab=98.03  E-value=7.6e-05  Score=53.32  Aligned_cols=93  Identities=25%  Similarity=0.314  Sum_probs=76.1

Q ss_pred             CcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----c---CC
Q 030353           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT-LDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD----H---HT  102 (179)
Q Consensus        31 ~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt-~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~----~---~~  102 (179)
                      |+|-.-++.|...|..|..+|..|.++-..+-+..+. ..++..|..+...|+.++..+...|+.|....    .   ..
T Consensus         3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~   82 (103)
T PF00804_consen    3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS   82 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence            5689999999999999999999999998887766663 37999999999999999999999999999872    1   11


Q ss_pred             CCchhHHHHHHHHHHHHHHHH
Q 030353          103 EVSPIRKIADAKLAKDFQSVL  123 (179)
Q Consensus       103 ~~~~~~k~~~eKL~~dF~~aL  123 (179)
                      .+.+.++.+..-|.+.|++++
T Consensus        83 ~~~ri~~nq~~~L~~kf~~~m  103 (103)
T PF00804_consen   83 NEVRIRKNQVQALSKKFQEVM  103 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            233446666777888888764

Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.01  E-value=1.6  Score=38.19  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=87.3

Q ss_pred             CCcchhHHHHHHHHHHHHHhhHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------C
Q 030353           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------H  101 (179)
Q Consensus        30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~-~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~-------~  101 (179)
                      ..+|-.=++.|-..|-.+...+..|+++-. .|-++.--+.++.+|......+..+.+.+-..|+.+..-..       .
T Consensus        35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~  114 (297)
T KOG0810|consen   35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRS  114 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            456777788888999999999888888653 35566666789999999999999999888888888766321       1


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353          102 TEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (179)
Q Consensus       102 ~~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~  142 (179)
                      .+..+..+.+..=+.+-|.+++.+|+.+|..|-++-|..+.
T Consensus       115 ~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~  155 (297)
T KOG0810|consen  115 SAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQ  155 (297)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23444566666668899999999999999988887665554

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=93.58  E-value=0.98  Score=39.23  Aligned_cols=111  Identities=13%  Similarity=0.076  Sum_probs=76.9

Q ss_pred             CCcchhHHHHHHHHHHHHHhhHHHHHHHHHhc--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchh
Q 030353           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSL--GTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPI  107 (179)
Q Consensus        30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~L--GT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~  107 (179)
                      .|-|......|...+..+-.+++.+.+....-  -.+.|+   +.    -...+.+|.+.++.+|++...+....-..-+
T Consensus        33 ~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k---~~----k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~  105 (283)
T COG5325          33 TPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDK---SE----KEDEIDELSKKVNQDLQRCEKILKTKYKNLQ  105 (283)
T ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhh---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888999999999999988888743332  122222   11    1233566777777777776665432122335


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 030353          108 RKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKE  147 (179)
Q Consensus       108 ~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~~ar~a  147 (179)
                      ..+.++||.+|+...+..++++|++.+.-++..+..++..
T Consensus       106 s~~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l  145 (283)
T COG5325         106 SSFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFL  145 (283)
T ss_pred             HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHH
Confidence            6677899999999999999999999998877766654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
2dnx_A	130	Solution Structure Of Rsgi Ruh-063, An N-Terminal D		2e-04

>pdb|2DNX|A Chain A, Solution Structure Of Rsgi Ruh-063, An N-Terminal Domain Of Syntaxin 12 From Human Cdna Length = 130

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 41  AAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH 100
           +  I +I+ A +    L++ LGT +D+  L++ L + +    QL K+T+  LK+      
Sbjct: 20  SGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPL 79
Query: 101 HTEVSPIR--KIADAKLAKDFQSVLKEFQKAQRLAAERE 137
               S  R  ++   +L  DF + L  FQ  QR  +E+E
Sbjct: 80  PLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	1e-26
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	1e-08
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	2e-07

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 97.4 bits (242), Expect = 1e-26
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 23  RKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIG 82
                          Q  +  I +I+ A +    L++ LGT +D+  L++ L + +    
Sbjct: 2   SSGSSGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTN 61

Query: 83  QLVKDTSSKLKQASEADHHTEVS--PIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTY 140
           QL K+T+  LK+          S    +++   +L  DF + L  FQ  QR  +E+E   
Sbjct: 62  QLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES 121

Query: 141 APFVPKES 148
                  S
Sbjct: 122 IARSGPSS 129

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 34  QDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKL 92
            +  + +   I +I   V    R  +  L +P      +++L +    I +      SKL
Sbjct: 34  FEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKL 93

Query: 93  KQASEADHHTE-------VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE 137
           K   ++    E          IRK   + L++ F  V+ E+   Q    ER 
Sbjct: 94  KSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERC 145

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 15/128 (11%)

Query: 25  QQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVN---SLGTPKDTLDLRDKLHKTRLHI 81
           Q +   +   +  + +   I  I  A+    +L        + +D   L +KL  T   I
Sbjct: 38  QPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARI 97

Query: 82  GQLVKDTSSKLKQ------------ASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKA 129
             L     + LKQ              E    +    IR+   + L++ F  V+  +   
Sbjct: 98  SALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDV 157

Query: 130 QRLAAERE 137
           Q     R 
Sbjct: 158 QAENKRRY 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	100.0
1hs7_A	97	Syntaxin VAM3; UP-and-DOWN three-helix bundle inse	99.79
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	99.48
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	99.25
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	99.04
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	98.79
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	98.19
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	96.9
2p7n_A	407	Pathogenicity island 1 effector protein; CVR69, st	81.89

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=213.36  Aligned_cols=118  Identities=24%  Similarity=0.320  Sum_probs=111.4

Q ss_pred             CCcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CCCchh
Q 030353           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH--TEVSPI  107 (179)
Q Consensus        30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~--~~~~~~  107 (179)
                      +|||++|++.|+++||+||++|++|++++++|||++|+++||++||.++++|++|+|+|++.|++|++|++.  ..++++
T Consensus         9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~   88 (130)
T 2dnx_A            9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQ   88 (130)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence            789999999999999999999999999999999999999999999999999999999999999999999731  135678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 030353          108 RKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKE  147 (179)
Q Consensus       108 ~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~~ar~a  147 (179)
                      ++++++||++||+++|++||++||.++++||+++..|++.
T Consensus        89 ~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~~ar~~  128 (130)
T 2dnx_A           89 QRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARSGPS  128 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence            9999999999999999999999999999999999988855

>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.79  E-value=5.7e-19  Score=128.95  Aligned_cols=89  Identities=15%  Similarity=0.230  Sum_probs=80.8

Q ss_pred             cchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHH
Q 030353           32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLH-KTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKI  110 (179)
Q Consensus        32 eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~-~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~  110 (179)
                      ||..|++.++++|+       .|++++.+|||++|+++||++|. .++.+|+.|.|+|+    +|..++           
T Consensus         7 d~~~li~t~s~niq-------~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~-----------   64 (97)
T 1hs7_A            7 ELSNLIETFAEQSR-------VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH-----------   64 (97)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH-----------
T ss_pred             cHHHHHHHHHHHHH-------HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc-----------
Confidence            67888888888887       89999999999999999999999 99999999999999    444442           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353          111 ADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (179)
Q Consensus       111 ~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~  142 (179)
                      +++||++||..++++||.+||.|+++++.++.
T Consensus        65 qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e~~~   96 (97)
T 1hs7_A           65 QNGKLSADFKNLKTKYQSLQQSYNQRKSLFPL   96 (97)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            58999999999999999999999999999875

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.48  E-value=7.2e-13  Score=105.75  Aligned_cols=110  Identities=11%  Similarity=0.106  Sum_probs=98.5

Q ss_pred             CCcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCC-CCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 030353           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGT-PKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSP  106 (179)
Q Consensus        30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT-~kDt~--~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~  106 (179)
                      .|+|-..++.|..+|++|+.+|..|+++...+++ +.+..  .+|.+|+.+...|+.+++.+...|+.|....   ..++
T Consensus         4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~---~~~r   80 (196)
T 1fio_A            4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDT   80 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhh
Confidence            3579999999999999999999999999999555 44432  6999999999999999999999999999985   3468


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353          107 IRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (179)
Q Consensus       107 ~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~  142 (179)
                      .++.+..+|.++|++++.+|+.+|+.|.++.|..+.
T Consensus        81 ~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~  116 (196)
T 1fio_A           81 NKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK  116 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999876654

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.25  E-value=1e-10  Score=98.60  Aligned_cols=114  Identities=20%  Similarity=0.219  Sum_probs=100.3

Q ss_pred             CCcchhHHHHHHHHHHHHHhhHHHHHHHHH-hcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----
Q 030353           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH-----  101 (179)
Q Consensus        30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~-~LGT~kDt~--~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~-----  101 (179)
                      .|+|..+++.|...|+.|+.+|..|.++.+ .|||+.+..  .++..|+.++..|+.+++.+...|+.|......     
T Consensus        43 ~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~  122 (279)
T 2xhe_B           43 MADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEG  122 (279)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            568999999999999999999999999986 589999988  899999999999999999999999999874321     


Q ss_pred             -----CC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 030353          102 -----TE--VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPF  143 (179)
Q Consensus       102 -----~~--~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~~  143 (179)
                           .+  ..+.++.+..+|.++|+.++.+|+.+|+.|.++.|..+.+
T Consensus       123 ~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R  171 (279)
T 2xhe_B          123 TFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR  171 (279)
T ss_dssp             CCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 01  2256888999999999999999999999999999876653

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=99.04  E-value=3.3e-09  Score=89.22  Aligned_cols=113  Identities=18%  Similarity=0.183  Sum_probs=96.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------
Q 030353           29 NQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKD-TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------  100 (179)
Q Consensus        29 ~~~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kD-t~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~-------  100 (179)
                      .-|+|-..++.|..+|..|+.+|..|+++.+.+++..+ .+.++.+|+.+...|+.+++.+...|+.|.....       
T Consensus        29 ~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~  108 (267)
T 1dn1_B           29 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR  108 (267)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            36789999999999999999999999999999887544 4789999999999999999999999999976421       


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030353          101 HTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYA  141 (179)
Q Consensus       101 ~~~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~  141 (179)
                      +....+.++.+...|.+.|++++.+|+.+|..|.++.|..+
T Consensus       109 ~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i  149 (267)
T 1dn1_B          109 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI  149 (267)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122567889999999999999999999999999987643

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=98.79  E-value=1.5e-08  Score=80.23  Aligned_cols=112  Identities=16%  Similarity=0.214  Sum_probs=90.3

Q ss_pred             CcchhHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 030353           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT  102 (179)
Q Consensus        31 ~eF~~L~~~Is~~If~In~nVs~L~klv~~-LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~-------~~  102 (179)
                      ++|-.-++.|...|..|..+|..|+++-.. |+++.+...++.+|..+...|+.+++.+...|+.|.....       ..
T Consensus        39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s  118 (180)
T 1s94_A           39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSS  118 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence            368899999999999999999999998877 8888888899999999999999999999999999986431       11


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353          103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (179)
Q Consensus       103 ~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~  142 (179)
                      ...+.++.+...|.+.|..++++||.+|..|.++.|..+.
T Consensus       119 ~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~  158 (180)
T 1s94_A          119 ADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK  158 (180)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2335678889999999999999999999999998877765

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=98.19  E-value=4.4e-05  Score=56.42  Aligned_cols=110  Identities=20%  Similarity=0.241  Sum_probs=90.6

Q ss_pred             CcchhHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 030353           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT  102 (179)
Q Consensus        31 ~eF~~L~~~Is~~If~In~nVs~L~klv~~-LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~-------~~  102 (179)
                      ++|-.-++.|...|..|..+|..|.++-.. |.++.....++.+|..+...|+.+++.+-..|+.|..-..       ..
T Consensus         8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s   87 (127)
T 1ez3_A            8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS   87 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence            468888999999999999999999886655 5566667789999999999999999999999999876321       11


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030353          103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTY  140 (179)
Q Consensus       103 ~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~  140 (179)
                      ...+.++-+..-|.+-|.+++.+|+.+|..|-++-+.-
T Consensus        88 ~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r  125 (127)
T 1ez3_A           88 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR  125 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12245777888899999999999999999999887653

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=96.90  E-value=0.016  Score=46.54  Aligned_cols=110  Identities=20%  Similarity=0.248  Sum_probs=86.6

Q ss_pred             CCcchhHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-------
Q 030353           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH-------  101 (179)
Q Consensus        30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~-LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~-------  101 (179)
                      -.+|-.-++.|...|.+|..+|..|.++... +.++.+.......+..+...+..++..+...++.+..+...       
T Consensus        42 m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~  121 (279)
T 3c98_B           42 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRS  121 (279)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            4578888999999999999999999987665 57888888899999999999999998888888777665321       


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030353          102 TEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETT  139 (179)
Q Consensus       102 ~~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~  139 (179)
                      ...-+...-+...|...|.....+|...|+.+.+.-+.
T Consensus       122 ~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~  159 (279)
T 3c98_B          122 SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG  159 (279)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11112344556679999999999999999988865443

>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}

Probab=81.89  E-value=5.4  Score=35.15  Aligned_cols=74  Identities=15%  Similarity=0.098  Sum_probs=49.0

Q ss_pred             chhHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 030353           33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA  111 (179)
Q Consensus        33 F~~L~~~Is~~If~In~n-Vs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~  111 (179)
                      ...|+..|+..|-.|+.+ +--+.                    ++..+-.+.++++|+.|.+++.+...-......++-
T Consensus       178 ~aeLw~~Isd~I~nIksdYldvYa--------------------~IvK~YTdyyQdfNeaLSklSdyIsAGkDGNkIkFd  237 (407)
T 2p7n_A          178 DSDLWDMISDQIGKIKDNYLGVYE--------------------NVVGQYTDFYKAFSDILSQMANWIKPGGDGNKVKLN  237 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHH--------------------HHHHHHHHHHHHHHHHHHHHGGGCC---------CC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeeec
Confidence            345566666666666655 44343                    344556788999999999999998642233368888


Q ss_pred             HHHHHHHHHHHHHHH
Q 030353          112 DAKLAKDFQSVLKEF  126 (179)
Q Consensus       112 ~eKL~~dF~~aL~~F  126 (179)
                      ..++.++|...++.|
T Consensus       238 ~~sfk~al~kl~~KY  252 (407)
T 2p7n_A          238 VDALKAALEKLKKDF  252 (407)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            889999999998888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.05
d1hs7a_	97	Vam3p N-terminal domain {Baker's yeast (Saccharomy	98.29
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	98.08

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.5e-09  Score=81.50  Aligned_cols=109  Identities=11%  Similarity=0.109  Sum_probs=97.1

Q ss_pred             CcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchh
Q 030353           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT---LDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPI  107 (179)
Q Consensus        31 ~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt---~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~  107 (179)
                      ++|...++.|...|+.|+.+|..|.++...+++..+.   ..++..|..+...++.+++.+...++.+....   +.++.
T Consensus         5 ~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~---~~~~~   81 (196)
T d1fioa_           5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTN   81 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHH
Confidence            4688999999999999999999999999998876554   56899999999999999999999999888764   45778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353          108 RKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (179)
Q Consensus       108 ~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~  142 (179)
                      ++.+..+|.++|..+++.|+.+|..|.++.|..+.
T Consensus        82 ~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~  116 (196)
T d1fioa_          82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK  116 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999877655

>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vam3p N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=7.4e-06  Score=57.04  Aligned_cols=89  Identities=15%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHH
Q 030353           37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLH-KTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKL  115 (179)
Q Consensus        37 ~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~-~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~~eKL  115 (179)
                      ...++.-|-.+-.+|.-|++-+..+||.+|...||.+|. +++-.|..+.+       ++.+.+        ..-..+|.
T Consensus         5 ~~ev~~ll~tL~~~i~lLkk~~~kiGT~rD~~~LR~kIetelIP~~~~~~~-------~i~~~~--------~l~~~dK~   69 (97)
T d1hs7a_           5 TKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRD-------KIESNI--------LIHQNGKL   69 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHH-------HHHHST--------HHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHhhhhhHHHHHH-------HHHhcc--------CcccCchH
Confidence            456778888899999999999999999999999999996 66666655554       333322        12236899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Q 030353          116 AKDFQSVLKEFQKAQRLAAERETTY  140 (179)
Q Consensus       116 ~~dF~~aL~~FQ~~Qr~~aekek~~  140 (179)
                      ++||+..-.+|+.++..|..+.-..
T Consensus        70 ~~DF~~L~~~l~~l~~~Y~~Rk~~~   94 (97)
T d1hs7a_          70 SADFKNLKTKYQSLQQSYNQRKSLF   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999998876544

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=2.9e-05  Score=55.81  Aligned_cols=109  Identities=20%  Similarity=0.237  Sum_probs=88.1

Q ss_pred             CcchhHHHHHHHHHHHHHhhHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 030353           31 SQSQDPSQAVAAAIFQINTAVSSFYRLV-NSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT  102 (179)
Q Consensus        31 ~eF~~L~~~Is~~If~In~nVs~L~klv-~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~-------~~  102 (179)
                      ++|-.=++.|-..|..|..+|..|..+- ..|.++.-.+.++..|..+...+....+.+-..|+.|..-..       ..
T Consensus         6 ~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s   85 (124)
T d1ez3a_           6 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS   85 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence            3577778999999999999999998863 445666666789999999999999999999999988865321       11


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030353          103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETT  139 (179)
Q Consensus       103 ~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~  139 (179)
                      +..+.++-+..-|.+.|.+++.+||.+|..|-++-|.
T Consensus        86 ~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k~  122 (124)
T d1ez3a_          86 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG  122 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2334577788889999999999999999999887665