Citrus Sinensis ID: 030354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELVC
Secondary Structure (PSIPRED)
ccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEcccccccEEEEEEEEEccccccEEEEEEcccccEEEEcccccEEccccEEEEEEEEEEccccccccccccccccEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEcEccccHccccccccccEEEEEEEEEEccccEEEEEEEEcccccEEEcccccEEccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEccccccccEccc
Coil and Loop (DISEMBL)
maiadrksasdskgwgffklpfrqsgnssnttstsssashqhqnqsnqqvegskthgsssvsSVARsllpkrrrlkldpanklyfpyeagKQVRSAIKIKNtskshvafkfqttapkscfmrppgailapgeSLIATVFKFvelpennekpmyqksRDKFKIISMKVkadvdyvpelvc
Flexible Loop (DISEMBL)
maiadrksasdskgwgfFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQqvegskthgsssvssvarsllpkrrrlkldpanklyfpyeagkqvrSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVelpennekpmyqksrdkfkiismkvkadvdyvpelvc
Low Complexity Region (SEG)
MAIADRKSASDSKGWGFFKLPFRqsgnssnttstsssashqhqnqsnqqVEGSKTHGsssvssvArsllpkrrrlklDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELVC
Disordered region (IsUnstruct)
**************WGFFK************************************************************ANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP**************FKIISMKVKADVDYV*****
Disordered Region (DISOPRED)
***************************************************************************KLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV***************DKFKIISMKVKADVD*VPELVC
Disordered Region (DISEMBL)
***********SKGWGFFKLPFRQ******************************************SLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELVC
Disordered Region (DISPRO)
************KGWGFFKLPFR********************************************LLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELVC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q8VYN2	295	Vesicle-associated protei	no	no	0.988	0.6	0.576	6e-59
Q8LPQ7	287	Vesicle-associated protei	no	no	0.988	0.616	0.618	5e-56
Q1ECE0	266	Vesicle-associated protei	no	no	0.955	0.642	0.618	2e-43
Q9LVU1	220	Vesicle-associated protei	no	no	0.513	0.418	0.346	1e-07
Q84WW5	239	Vesicle-associated protei	no	no	0.458	0.343	0.321	2e-05
P40075	244	Vesicle-associated membra	yes	no	0.391	0.286	0.4	2e-05
Q6Q595	175	Vesicle-associated membra	no	no	0.486	0.497	0.329	3e-05
Q9SHC8	239	Vesicle-associated protei	no	no	0.463	0.347	0.318	4e-05
Q8VZ95	256	Vesicle-associated protei	no	no	0.452	0.316	0.313	7e-05
Q10484	319	Uncharacterized protein C	yes	no	0.525	0.294	0.278	0.0002

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  226 bits (576), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 139/210 (66%), Gaps = 33/210 (15%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSA--------------------- 38
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 39  ---------SHQHQNQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
                         N  +    G   H   S SVSSVA+S LP +RRLKLDP+ KLYFPY
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPY 120

Query: 88  EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147
           E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PEN
Sbjct: 121 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 180

Query: 148 NEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
           NEKPM Q+SR KFKI+S+KVK  +DYVPEL
Sbjct: 181 NEKPMDQRSRVKFKIMSLKVKGPMDYVPEL 210

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  216 bits (551), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 125/202 (61%), Positives = 144/202 (71%), Gaps = 25/202 (12%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSAS---------HQHQNQSNQQ-- 49
           MA+ + KS SD + WG FKLPFR S + + + S+SSS +         H +QN  +Q   
Sbjct: 1   MALTEDKSDSDGRRWGKFKLPFRNSNSQAPSASSSSSMATSSSSVTSSHLNQNYIHQSRH 60

Query: 50  --------VEG-SKTHGSS-----SVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRS 95
                   VEG  + H  S     S+SSVARSLLP +RRLKLDP+ KLYFPYE GKQVRS
Sbjct: 61  FQYHGPPVVEGLGQNHHQSAATIPSMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRS 120

Query: 96  AIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQK 155
           AIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFVE PENNEKPM QK
Sbjct: 121 AIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPENNEKPMEQK 180

Query: 156 SRDKFKIISMKVKADVDYVPEL 177
           S  KFKI+S+K+K   DY+PEL
Sbjct: 181 SGVKFKIMSLKMKVPTDYMPEL 202

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 138/186 (74%), Gaps = 15/186 (8%)

Query: 1   MAIADRKSASDSKGWGFFKL-PFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSS 59
           M I DR++ S  K    F+L PF Q        ST+SS+S Q+ NQ+ +   G++    S
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQR------RSTTSSSSTQNPNQNYRSRHGNRNTDIS 54

Query: 60  SVS-------SVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQ 112
           +VS       SVARSLLP RRRL+LDP++ LYFPYE GKQVRSAIK+KNTSKSH AFKFQ
Sbjct: 55  AVSKPPLTMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQ 114

Query: 113 TTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK-PMYQKSRDKFKIISMKVKADV 171
           TTAPKSC+MRPPG +LAPGES+ ATVFKFVE PENNEK P+ QKS+ KFKI+S+KVK  V
Sbjct: 115 TTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGV 174

Query: 172 DYVPEL 177
           +YVPEL
Sbjct: 175 EYVPEL 180

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 81  NKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
           ++L F +E  KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I     
Sbjct: 15  DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR--- 71

Query: 141 FVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPE 176
            V L    E P   + +DKF + S  V    DVD +P+
Sbjct: 72  -VTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQ 108

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 82  KLYFPYEAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
           +L FP+E  KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   T   
Sbjct: 13  ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT--- 69

Query: 141 FVELPENNEKPMYQKSRDKFKIISMKV 167
            V +    E P+  + +DKF + ++ V
Sbjct: 70  -VTMQAQKEAPLDMQCKDKFLVQTVVV 95

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 99  IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ-KSR 157
           I N S   +AFK +TTAPK   +RP  A++APGE++   V  F+ L    E+P    K R
Sbjct: 27  ISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGL---TEEPAADFKCR 82

Query: 158 DKFKIISMKVKADVD 172
           DKF +I++    D++
Sbjct: 83  DKFLVITLPSPYDLN 97

Targets proteins containing a FFAT motif to endoplasmic reticulum membranes. Regulates phospholipid biosynthesis by modulating the subcellular localization of the transcriptional repressor OPI1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS22 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 82  KLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 141
           KL F     KQ    IK++N  +  V FK +T+AP    +RP  AI+   ES+   +  F
Sbjct: 7   KLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQIV-F 65

Query: 142 VELPENNEKPMYQKSRDKFKIISMKVKA 169
           + LP++       + RDKF I+++ + A
Sbjct: 66  LGLPKSTADDEMDQKRDKFLIVTLPIPA 93

Targets proteins containing a FFAT motif to membranes (By similarity). Involved in regulation of phospholipid metabolism.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L +DP + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S 
Sbjct: 6   LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKI 162
                  V +    E P   + +DKF +
Sbjct: 65  EV----LVTMQAQKEAPADLQCKDKFLL 88

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L ++P + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P    
Sbjct: 23  LTVEPLD-LQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR--- 78

Query: 135 IATVFKFVELPENNEKPMYQKSRDKF 160
            +T    V +    E P   + +DKF
Sbjct: 79  -STCEVLVTMQAQKEAPSDMQCKDKF 103

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           + L+  + + FP    + V+  ++++NT+   + FK +TTAPK   +RP G  +   E+ 
Sbjct: 1   MALECDSTIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRI---EAN 57

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 171
            A   + +  P ++E     K RDKF + S ++K ++
Sbjct: 58  SAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPEL 94

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
147801604	278	hypothetical protein VITISV_011094 [Viti	0.977	0.629	0.756	5e-61
356521293	269	PREDICTED: vesicle-associated protein 4-	0.972	0.646	0.688	5e-61
359495700	264	PREDICTED: vesicle-associated protein 4-	0.977	0.662	0.756	5e-61
42572975	212	vesicle-associated membrane family prote	1.0	0.844	0.580	6e-59
357475961	266	Vesicle-associated membrane protein-asso	0.977	0.657	0.697	7e-59
18415696	295	vesicle-associated membrane family prote	0.988	0.6	0.576	3e-57
449433896	256	PREDICTED: vesicle-associated protein 4-	0.949	0.664	0.702	3e-57
224116236	235	predicted protein [Populus trichocarpa]	0.720	0.548	0.847	7e-57
297804004	300	vesicle-associated membrane family prote	0.988	0.59	0.562	1e-56
255567425	281	structural molecule, putative [Ricinus c	0.988	0.629	0.668	3e-56

>gi|147801604|emb|CAN74544.1| hypothetical protein VITISV_011094 [Vitis vinifera]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 137/181 (75%), Positives = 153/181 (84%), Gaps = 6/181 (3%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQ----NQSNQQVEGSKTH 56
           MA+ D++S SD K WGFFKLPFR  GN++ T S+SS++   H     NQSN QVEGS  H
Sbjct: 1   MAVPDQRSHSDGKVWGFFKLPFR--GNNTITMSSSSTSHSSHLQHHHNQSNMQVEGSNLH 58

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
            S SVSSVARSLLP RRRL+LDP+NKLYFPYE GKQVRSAI+IKNTSKSHVAFKFQTTAP
Sbjct: 59  PSGSVSSVARSLLPTRRRLRLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAP 118

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
           KSCFMRPPGAILAPGESLIATVFKFVE PENNEKPM QKS+ KFKI+S+KVK  +DYVPE
Sbjct: 119 KSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMEQKSKVKFKIMSLKVKGPMDYVPE 178

Query: 177 L 177
           +
Sbjct: 179 M 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521293|ref|XP_003529291.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 147/186 (79%), Gaps = 12/186 (6%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQV---------E 51
           MA+AD K  S+ K W FFKLPFR S  ++NTT +S++  H H + ++            E
Sbjct: 1   MAVADPKPHSEPKVWNFFKLPFRHSA-ATNTTPSSANLHHLHHHHNHHHHHHNPNNLPLE 59

Query: 52  GSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKF 111
           GS +H S+SVSSVARSLLP RRRLKLDP+NKLYFPYE GKQVRSAI+IKNTSKS VAFKF
Sbjct: 60  GSTSHTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSSVAFKF 119

Query: 112 QTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 171
           QTTAPKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP  +KS  KFKI+S+KVK  +
Sbjct: 120 QTTAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKP--EKSGLKFKIMSLKVKGSI 177

Query: 172 DYVPEL 177
           DYVPEL
Sbjct: 178 DYVPEL 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495700|ref|XP_002275178.2| PREDICTED: vesicle-associated protein 4-2 [Vitis vinifera] gi|297745648|emb|CBI40859.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 137/181 (75%), Positives = 153/181 (84%), Gaps = 6/181 (3%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQ----NQSNQQVEGSKTH 56
           MA+ D++S SD K WGFFKLPFR  GN++ T S+SS++   H     NQSN QVEGS  H
Sbjct: 1   MAVPDQRSHSDGKVWGFFKLPFR--GNNTITMSSSSTSHSSHLQHHHNQSNMQVEGSNLH 58

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
            S SVSSVARSLLP RRRL+LDP+NKLYFPYE GKQVRSAI+IKNTSKSHVAFKFQTTAP
Sbjct: 59  PSGSVSSVARSLLPTRRRLRLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAP 118

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
           KSCFMRPPGAILAPGESLIATVFKFVE PENNEKPM QKS+ KFKI+S+KVK  +DYVPE
Sbjct: 119 KSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMEQKSKVKFKIMSLKVKGPMDYVPE 178

Query: 177 L 177
           +
Sbjct: 179 M 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572975|ref|NP_974584.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|332659053|gb|AEE84453.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 141/212 (66%), Gaps = 33/212 (15%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSASHQHQ---------------- 43
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 44  --------------NQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
                         N  +    G   H   S SVSSVA+S LP +RRLKLDP+ KLYFPY
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPY 120

Query: 88  EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147
           E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PEN
Sbjct: 121 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 180

Query: 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELVC 179
           NEKPM Q+SR KFKI+S+KVK  +DYVPELVC
Sbjct: 181 NEKPMDQRSRVKFKIMSLKVKGPMDYVPELVC 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475961|ref|XP_003608266.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|87240479|gb|ABD32337.1| Major sperm protein [Medicago truncatula] gi|355509321|gb|AES90463.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula]

 Score =  231 bits (590), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 147/182 (80%), Gaps = 7/182 (3%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQ-----VEGSKT 55
           MA+A+ K  S+ K W FFKLPFR S  SS  T++SS  ++ H +  +       +EGS +
Sbjct: 1   MAVAEPKLHSEPKVWNFFKLPFRNSNTSSTNTTSSSVNNNLHHHHHHNPNSNTPLEGSTS 60

Query: 56  HGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA 115
           H S+SVSSVARSLLP RRRLKLDP+NKLYFPYE GKQVRSAI+IKNTSKS+VAFKFQTTA
Sbjct: 61  HTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSNVAFKFQTTA 120

Query: 116 PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVP 175
           PKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP  +KS  KFKI+S+KVK  +DYVP
Sbjct: 121 PKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKP--EKSGLKFKIMSLKVKGSIDYVP 178

Query: 176 EL 177
           EL
Sbjct: 179 EL 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415696|ref|NP_567627.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|75161506|sp|Q8VYN2.1|VAP42_ARATH RecName: Full=Vesicle-associated protein 4-2; AltName: Full=Plant VAP homolog 4-2; Short=AtPVA42; AltName: Full=VAMP-associated protein 4-2 gi|17979373|gb|AAL49912.1| putative membrane associated protein [Arabidopsis thaliana] gi|20465773|gb|AAM20375.1| putative membrane associated protein [Arabidopsis thaliana] gi|21592907|gb|AAM64857.1| putative membrane associated protein [Arabidopsis thaliana] gi|332659054|gb|AEE84454.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 139/210 (66%), Gaps = 33/210 (15%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSA--------------------- 38
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 39  ---------SHQHQNQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
                         N  +    G   H   S SVSSVA+S LP +RRLKLDP+ KLYFPY
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPY 120

Query: 88  EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147
           E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PEN
Sbjct: 121 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 180

Query: 148 NEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
           NEKPM Q+SR KFKI+S+KVK  +DYVPEL
Sbjct: 181 NEKPMDQRSRVKFKIMSLKVKGPMDYVPEL 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433896|ref|XP_004134732.1| PREDICTED: vesicle-associated protein 4-2-like [Cucumis sativus]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 125/178 (70%), Positives = 146/178 (82%), Gaps = 8/178 (4%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSSS 60
           MA+ D+KS SD K WGF K  F+   +S+   +TSS  SHQ    ++  VEG+  H S+S
Sbjct: 1   MAVEDQKSTSDGKVWGFLKQTFK---HSTGGATTSSRTSHQ----THPPVEGTNPHTSAS 53

Query: 61  VSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF 120
           VSSVARSLLP RRRLKLDP+NKL+FPYE GKQVRSAI IKNTSKS+VAFKFQTTAPKSCF
Sbjct: 54  VSSVARSLLPTRRRLKLDPSNKLFFPYEPGKQVRSAIGIKNTSKSYVAFKFQTTAPKSCF 113

Query: 121 MRPPGAILAPGESLIATVFKFVELPENNEKPMYQK-SRDKFKIISMKVKADVDYVPEL 177
           MRPPGAILAPGES+IATVFKFVE+PE+NEKP+ QK +R KFKI+S+KVK  +DYVPEL
Sbjct: 114 MRPPGAILAPGESIIATVFKFVEVPESNEKPVDQKNNRVKFKIMSLKVKGQMDYVPEL 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 120/131 (91%), Gaps = 2/131 (1%)

Query: 49  QVEGSKT--HGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSH 106
           Q+EGS    H S+SVSSVARSLLP RRRLKLDPA+KLYFPYE GKQVRSAI+IKNTSKSH
Sbjct: 20  QIEGSSNPPHPSNSVSSVARSLLPTRRRLKLDPASKLYFPYEPGKQVRSAIRIKNTSKSH 79

Query: 107 VAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMK 166
           VAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVELPENNEKPM QKS+ KFKI+S+K
Sbjct: 80  VAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVELPENNEKPMEQKSKVKFKIMSLK 139

Query: 167 VKADVDYVPEL 177
           VK  +DYVPEL
Sbjct: 140 VKGVMDYVPEL 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804004|ref|XP_002869886.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297315722|gb|EFH46145.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 139/215 (64%), Gaps = 38/215 (17%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSASHQHQ---------------- 43
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHGNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 44  -------------------NQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANK 82
                              N  +    G   H   S SVSSVA+S LP +RRLKLDP+ K
Sbjct: 61  QHQQHHHHHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEK 120

Query: 83  LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
           LYFPYE GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 121 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 180

Query: 143 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
           E PENNEKPM Q+SR KFKI+S+KVK  +DYVPEL
Sbjct: 181 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPEL 215

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567425|ref|XP_002524692.1| structural molecule, putative [Ricinus communis] gi|223536053|gb|EEF37711.1| structural molecule, putative [Ricinus communis]

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 146/196 (74%), Gaps = 19/196 (9%)

Query: 1   MAIADR----KSASDS-------------KGWGFFKLPFRQS-GNSSNTTSTSSSASHQH 42
           MAIAD     KS SD              K WGFFKLPFR S GN+  ++S +SS+S  H
Sbjct: 1   MAIADHHSNNKSPSDYNNNSYGNSNSNNNKVWGFFKLPFRGSNGNTVPSSSYTSSSSSTH 60

Query: 43  QNQSNQQVEGSKTHGSSSVSSVARS-LLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKN 101
           Q+ +  Q+EGS  H SS+  S     LLP RRRLKLDPA KLYFPYE GKQVRSAIKIKN
Sbjct: 61  QHSNTAQIEGSNLHASSNSVSSVARSLLPTRRRLKLDPATKLYFPYEPGKQVRSAIKIKN 120

Query: 102 TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK 161
           TSKSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP+ QKS+ KFK
Sbjct: 121 TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPVEQKSKVKFK 180

Query: 162 IISMKVKADVDYVPEL 177
           I+S+KV   +DYVPEL
Sbjct: 181 IMSLKVNGMMDYVPEL 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.558	0.348	0.82	6e-46
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.558	0.375	0.782	6.6e-41
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.558	0.429	0.8	5.3e-40
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.513	0.418	0.346	9.3e-09
SGD|S000007228	175	SCS22 "Protein involved in reg	0.486	0.497	0.329	1.4e-07
FB|FBgn0028379	218	fan "farinelli" [Drosophila me	0.519	0.426	0.32	2.3e-07
SGD|S000000922	244	SCS2 "Integral ER membrane pro	0.396	0.290	0.405	5.8e-07
CGD|CAL0002790	411	orf19.1212 [Candida albicans (	0.474	0.206	0.322	1.7e-06
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.458	0.343	0.321	2e-06
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.435	0.326	0.337	4.3e-06

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 82/100 (82%), Positives = 88/100 (88%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP+ KLYFPYE GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IAT
Sbjct:   103 DPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIAT 162

Query:   138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
             VFKFVE PENNEKPM QKS  KFKI+S+K+K   DY+PEL
Sbjct:   163 VFKFVEPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPEL 202

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
 Identities = 79/101 (78%), Positives = 90/101 (89%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP++ LYFPYE GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ AT
Sbjct:    80 DPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFAT 139

Query:   138 VFKFVELPENNEK-PMYQKSRDKFKIISMKVKADVDYVPEL 177
             VFKFVE PENNEK P+ QKS+ KFKI+S+KVK  V+YVPEL
Sbjct:   140 VFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPEL 180

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 80/100 (80%), Positives = 90/100 (90%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP +KL+FPYE GKQVRSA+KIKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGES+IAT
Sbjct:    49 DPPSKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIAT 108

Query:   138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
             VFKFVE PENNEKP+ QK + KFKI+S+KVK  ++YVPEL
Sbjct:   109 VFKFVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPEL 148

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 34/98 (34%), Positives = 54/98 (55%)

Query:    81 NKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
             ++L F +E  KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I  V  
Sbjct:    15 DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV-- 72

Query:   141 FVELPENNEKPMYQKSRDKFKIISMKVK--ADVDYVPE 176
                L    E P   + +DKF + S  V    DVD +P+
Sbjct:    73 --TLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQ 108

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

SGD|S000007228 SCS22 "Protein involved in regulation of phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 29/88 (32%), Positives = 46/88 (52%)

Query:    82 KLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 141
             KL F     KQ    IK++N  +  V FK +T+AP    +RP  AI+   ES+   +  F
Sbjct:     7 KLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQIV-F 65

Query:   142 VELPENNEKPMYQKSRDKFKIISMKVKA 169
             + LP++       + RDKF I+++ + A
Sbjct:    66 LGLPKSTADDEMDQKRDKFLIVTLPIPA 93

GO:0016020 "membrane" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IGI

GO:0006348 "chromatin silencing at telomere" evidence=IGI;IDA;IMP

GO:0005575 "cellular_component" evidence=ND

GO:0090158 "endoplasmic reticulum membrane organization" evidence=IGI

GO:0003674 "molecular_function" evidence=ND

GO:0060304 "regulation of phosphatidylinositol dephosphorylation" evidence=IGI

FB|FBgn0028379 fan "farinelli" [Drosophila melanogaster (taxid:7227)]

 Score = 120 (47.3 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 32/100 (32%), Positives = 51/100 (51%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSH-VAFKFQTTAPKSCFMRPPGAILAPGESLIA 136
             DP + + F     + V   + IKNTSK+  +AFK +TT PK  ++RP   +L P + +  
Sbjct:    12 DPCDVIVFEGPFNRSVSRKLVIKNTSKTQRMAFKMKTTTPKLFYVRPNIGVLGPEQKVSV 71

Query:   137 TVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
              +F    L E  +K      R KF +++ +V  D+  V E
Sbjct:    72 DIFMQPILQEQIKK------RHKFLLLAAEVTGDISDVQE 105

GO:0005886 "plasma membrane" evidence=ISS;NAS

GO:0005198 "structural molecule activity" evidence=IEA

GO:0007291 "sperm individualization" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 118 (46.6 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query:    99 IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRD 158
             I N S   +AFK +TTAPK   +RP  A++APGE++   V  F+ L E  E     K RD
Sbjct:    27 ISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGLTE--EPAADFKCRD 83

Query:   159 KFKIISMKVKADVD 172
             KF +I++    D++
Sbjct:    84 KFLVITLPSPYDLN 97

GO:0005634 "nucleus" evidence=IEA

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=IMP;IPI

GO:0031965 "nuclear membrane" evidence=IEA;IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0033149 "FFAT motif binding" evidence=IMP;IPI

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IGI;IMP

GO:0006348 "chromatin silencing at telomere" evidence=IGI;IMP

GO:0048309 "endoplasmic reticulum inheritance" evidence=IGI;IMP

GO:0005934 "cellular bud tip" evidence=IDA

GO:0090158 "endoplasmic reticulum membrane organization" evidence=IGI

GO:0060304 "regulation of phosphatidylinositol dephosphorylation" evidence=IGI

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0032377 "regulation of intracellular lipid transport" evidence=IMP

CGD|CAL0002790 orf19.1212 [Candida albicans (taxid:5476)]

 Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query:    84 YFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL-IATVFKFV 142
             +F     KQ+   + + N + + +AFK +TTAPK   +RP  +I+ PG+SL I+ + +  
Sbjct:    51 FFSGSFTKQITEYLTLSNPTNTPLAFKVKTTAPKLYCVRPNASIVQPGDSLQISIILQGF 110

Query:   143 ELPENNEKPMYQKSRDKFKIISMKVKADVD 172
               P  N+   Y K +DKF ++S+     +D
Sbjct:   111 SQPLPND---Y-KCKDKFLLVSVPAPNSID 136

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=IEA

GO:0048309 "endoplasmic reticulum inheritance" evidence=IEA

GO:0006348 "chromatin silencing at telomere" evidence=IEA

GO:0032377 "regulation of intracellular lipid transport" evidence=IEA

GO:0033149 "FFAT motif binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 28/87 (32%), Positives = 48/87 (55%)

Query:    82 KLYFPYEAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
             +L FP+E  KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   TV  
Sbjct:    13 ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTV-- 70

Query:   141 FVELPENNEKPMYQKSRDKFKIISMKV 167
                +    E P+  + +DKF + ++ V
Sbjct:    71 --TMQAQKEAPLDMQCKDKFLVQTVVV 95

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 28/83 (33%), Positives = 45/83 (54%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S  + 
Sbjct:     9 DPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSS--SE 65

Query:   138 VFKFVELPENNEKPMYQKSRDKF 160
             V   V +    E P   + +DKF
Sbjct:    66 VL--VTMQAQKEAPADLQCKDKF 86

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	9e-25
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	7e-06

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 92.0 bits (229), Expect = 9e-25
 Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L +DP + L+F     KQ  S + + N S   VAFK +TT PK   +RP   IL PGES+
Sbjct: 2   LTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESV 61

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELV 178
             T+ +    P + E    +K  DKF I   +   D     E  
Sbjct: 62  TITITR---QPFDKEPGDPKK--DKFVIQYTEAPDDAKDAKEAF 100

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 83  LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
             F      + +    ++N S   V FK +TTAPK   +RP   ++ P  ++   V   +
Sbjct: 9   TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEV---I 65

Query: 143 ELPENNEKPMYQKSRDKFKIISMKVKAD 170
                 E     K RDKF I S +    
Sbjct: 66  LQGLTEEPAPDFKCRDKFLIQSYRFDWR 93

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.9
KOG0439	218	consensus VAMP-associated protein involved in inos	99.89
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.89
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.59
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	96.45
PF14646	426	MYCBPAP: MYCBP-associated protein family	94.21
PRK09918	230	putative fimbrial chaperone protein; Provisional	93.73
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	92.45
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	91.18
PRK09926	246	putative chaperone protein EcpD; Provisional	90.34
PRK15249	253	fimbrial chaperone protein StbB; Provisional	89.32
PRK15299	227	fimbrial chaperone protein StiB; Provisional	88.65
PRK15295	226	fimbrial assembly chaperone SthB; Provisional	88.39
PRK15211	229	fimbrial chaperone protein PefD; Provisional	88.18
PRK11385	236	putativi pili assembly chaperone; Provisional	85.96
PRK15208	228	long polar fimbrial chaperone LpfB; Provisional	85.34
PRK15246	233	fimbrial assembly chaperone StbE; Provisional	84.28
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	83.98
PF06030	121	DUF916: Bacterial protein of unknown function (DUF	83.94
PRK15192	234	fimbrial chaperone BcfG; Provisional	81.03
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	80.01

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.90  E-value=3.4e-23  Score=152.60  Aligned_cols=94  Identities=31%  Similarity=0.475  Sum_probs=77.5

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~~  154 (179)
                      |.|+|.+.|.|.++.++...+.|+|+|.++.+||||||||+|.+|+|+|+.|+|.||+++.|.|++   +|......  .
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~~--~   76 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEPS--N   76 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTTT--S
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCCC--C
Confidence            789999999999999999999999999999999999999999999999999999999999999998   66543321  2


Q ss_pred             CCCCeEEEEEEEeCCCccc
Q 030354          155 KSRDKFKIISMKVKADVDY  173 (179)
Q Consensus       155 k~kDKFlVqs~~v~~~~d~  173 (179)
                      ..+|||+|+++.++++...
T Consensus        77 ~~~dkf~I~~~~~~~~~~~   95 (109)
T PF00635_consen   77 KKKDKFLIQSIVVPDNATD   95 (109)
T ss_dssp             TSSEEEEEEEEEE-TT-SS
T ss_pred             CCCCEEEEEEEEcCCCccc
Confidence            2399999999999877644

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.4e-23  Score=169.39  Aligned_cols=106  Identities=36%  Similarity=0.556  Sum_probs=93.2

Q ss_pred             CCCCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCC
Q 030354           69 LPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENN  148 (179)
Q Consensus        69 ~p~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~  148 (179)
                      +..+.+|.|+|..+|+|..+..+++++.|+|+|+++.++|||||||+|++|+|||+.|+|.||++++|.|.+   +|. .
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~~-~   78 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QPF-E   78 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---ccC-c
Confidence            346789999998899999999999999999999999999999999999999999999999999999999987   663 3


Q ss_pred             CCCCCCCCCCeEEEEEEEeCCC-ccccCccC
Q 030354          149 EKPMYQKSRDKFKIISMKVKAD-VDYVPELV  178 (179)
Q Consensus       149 e~p~~~k~kDKFlVqs~~v~~~-~d~~~elF  178 (179)
                      ..|.+.+++|||+||++.++.+ ...+.++|
T Consensus        79 ~~P~d~~~r~kF~v~~~~~~~~~~~~~~~~~  109 (218)
T KOG0439|consen   79 KSPPDFKSRHKFLIQSLKAPPPTTRDVVDLW  109 (218)
T ss_pred             cCchhhcccceEEEEEEecCCccccchhhhc
Confidence            5577888999999999999975 44444443

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.89  E-value=4.5e-23  Score=172.87  Aligned_cols=98  Identities=26%  Similarity=0.358  Sum_probs=89.0

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~~  154 (179)
                      |.|+|  ++.|+.+...+.++.+.|.|.+.++|+||||||+|+.|+||||.|.|.|++++.|+|+|   +++.+|+..+.
T Consensus         3 veisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEpapdf   77 (242)
T COG5066           3 VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEPAPDF   77 (242)
T ss_pred             eEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCCCCCc
Confidence            67888  68888888999999999999999999999999999999999999999999999999998   88888998899


Q ss_pred             CCCCeEEEEEEEeCCC---ccccCccC
Q 030354          155 KSRDKFKIISMKVKAD---VDYVPELV  178 (179)
Q Consensus       155 k~kDKFlVqs~~v~~~---~d~~~elF  178 (179)
                      +|+||||||++.++.+   +|| +|.|
T Consensus        78 KCrdKFLiqs~~~~~~l~g~d~-ad~w  103 (242)
T COG5066          78 KCRDKFLIQSYRFDWRLSGSDF-ADHW  103 (242)
T ss_pred             cccceeEEEEeccChhhccchH-HHHH
Confidence            9999999999999844   466 5544

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.59  E-value=6.2e-07  Score=65.49  Aligned_cols=67  Identities=27%  Similarity=0.416  Sum_probs=59.2

Q ss_pred             CcEEEcCCCceEeecC-CCceEEEEEEEEcCCCCeEEEEeccCC--CceeEecCCeeEeCCCCeEEEEEEe
Q 030354           73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTA--PKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~~-~~k~~~s~LtL~N~s~~~VAFKVKTTa--P~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      ..|.++|. +|.|-.- .|......|+|+|.+..+..|+|+.-.  ...|.|.|..|+|.||+++.|.|.+
T Consensus         2 P~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~   71 (102)
T PF14874_consen    2 PTLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF   71 (102)
T ss_pred             CEEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence            35899995 9999874 488889999999999999999998543  5789999999999999999999998

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=96.45  E-value=0.042  Score=41.30  Aligned_cols=62  Identities=21%  Similarity=0.397  Sum_probs=50.6

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCC----C-----ceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA----P-----KSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTa----P-----~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.|+|. -+.|.....   ...++|+|.++.++.+.+....    +     ..|.|-|+.-.|+||+...|.|..
T Consensus         2 i~i~~t-rii~~~~~~---~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen    2 IQISPT-RIIFNESQR---SASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             EEESSS-EEEEETTSS---EEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             EEEccE-EEEEeCCCC---EEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            678884 888875332   4899999999999999877553    1     278999999999999999999953

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=94.21  E-value=0.26  Score=45.13  Aligned_cols=66  Identities=12%  Similarity=0.332  Sum_probs=55.5

Q ss_pred             EEEcCCCceEeecCCCceEEEEEE-EEcCCCCeEEEEeccC------------CCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIK-IKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~Lt-L~N~s~~~VAFKVKTT------------aP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      ..+.+.-.|.|...++......|. |.|.+..-|-|..+--            ....|......|+|.||++..|.|+.
T Consensus       231 ~~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F  309 (426)
T PF14646_consen  231 PEVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF  309 (426)
T ss_pred             CccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE
Confidence            344455589999999988888888 9999999999985532            25789999999999999999999987

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=93.73  E-value=0.58  Score=39.67  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCC-----CceeEecCCeeEeCCCCeEEEEEEe
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA-----PKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTa-----P~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      -|.++|. .+.|......   ..|+|+|.++.++........     ..-|.|-|+.-.|+||++..|+|.+
T Consensus        25 ~v~l~~t-Rvi~~~~~~~---~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~   92 (230)
T PRK09918         25 GMVPETS-VVIVEESDGE---GSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFIL   92 (230)
T ss_pred             eEEEccE-EEEEECCCCe---EEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence            4778884 7777754433   899999999887655543321     1359999999999999999999986

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=92.45  E-value=0.51  Score=30.17  Aligned_cols=42  Identities=26%  Similarity=0.184  Sum_probs=34.2

Q ss_pred             EEEEcCCCCeE-EEEeccCCCceeEecCCeeEeCCCCeEEEEEE
Q 030354           97 IKIKNTSKSHV-AFKFQTTAPKSCFMRPPGAILAPGESLIATVF  139 (179)
Q Consensus        97 LtL~N~s~~~V-AFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~  139 (179)
                      ++++|.++.++ ..+|+|+ =+-..+......|.||++..|.|+
T Consensus         2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~   44 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVT   44 (45)
T ss_pred             EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEE
Confidence            68999999866 5667764 466778888899999999999986

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=91.18  E-value=1.1  Score=33.57  Aligned_cols=67  Identities=15%  Similarity=0.274  Sum_probs=38.1

Q ss_pred             EEEcCCCceEee-cCCCc-eEEEEEEEEcCCCCeEEEEeccCCCceeEe-cCCee-EeCCCCeEEEEEEee
Q 030354           75 LKLDPANKLYFP-YEAGK-QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGA-ILAPGESLIATVFKF  141 (179)
Q Consensus        75 L~I~P~~eL~F~-~~~~k-~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~V-rP~~G-iI~Pgesv~I~I~l~  141 (179)
                      +.|-+..-..|. ...|. +=...|+|.|.+..+.-|.|+...+..+.+ .|... -|.||++..+.|++.
T Consensus        13 ~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~   83 (118)
T PF11614_consen   13 LNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT   83 (118)
T ss_dssp             EEEEE-SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred             EEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence            344443333333 34443 224899999999999999999888878888 66555 599999999888763

>PRK09926 putative chaperone protein EcpD; Provisional

Probab=90.34  E-value=2.8  Score=35.89  Aligned_cols=64  Identities=6%  Similarity=0.186  Sum_probs=48.2

Q ss_pred             CcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCc----------eeEecCCeeEeCCCCeEEEEEEe
Q 030354           73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPK----------SCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~----------~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      --|.|+|. -+.|......   ..|+|.|.++.++.--.-....+          -|.|-|+.--|+||+...|+|..
T Consensus        25 A~i~l~~T-RvI~~~~~~~---~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~   98 (246)
T PRK09926         25 ADIVISGT-RIIYKSDQKD---VNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMY   98 (246)
T ss_pred             eeEEeCce-EEEEeCCCce---EEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEe
Confidence            45888994 7887753333   89999999988765544332111          39999999999999999999986

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=89.32  E-value=4.4  Score=34.91  Aligned_cols=63  Identities=14%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccC------CC-----ceeEecCCeeEeCCCCeEEEEEEe
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT------AP-----KSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTT------aP-----~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      -|.|+|. -+.|+.....   ..|+|.|.++.++.-..-+.      .|     .-|.|-|+.--|+||+...|+|..
T Consensus        29 ~l~l~~T-Rviy~~~~~~---~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~  102 (253)
T PRK15249         29 SVTILGS-RIIYPSTASS---VDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIY  102 (253)
T ss_pred             EEEeCce-EEEEeCCCcc---eeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEE
Confidence            4888884 7877644433   89999999987654443211      11     139999999999999999999986

>PRK15299 fimbrial chaperone protein StiB; Provisional

Probab=88.65  E-value=5.2  Score=33.83  Aligned_cols=63  Identities=14%  Similarity=0.269  Sum_probs=45.8

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCC--------CceeEecCCeeEeCCCCeEEEEEEe
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA--------PKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTa--------P~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      -|.|+|. -+.|.....   ...|+|.|.++.++.-..-...        ..-|.|-|+.--|+||+...|+|..
T Consensus        23 ~i~l~~T-Rvi~~~~~~---~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   93 (227)
T PRK15299         23 GINIGTT-RVIFHGDAK---DASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIR   93 (227)
T ss_pred             eEEECce-EEEEeCCCc---EEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEE
Confidence            4788884 777765433   3899999998875443322111        1349999999999999999999986

>PRK15295 fimbrial assembly chaperone SthB; Provisional

Probab=88.39  E-value=6.5  Score=33.34  Aligned_cols=61  Identities=18%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc----CC-----CceeEecCCeeEeCCCCeEEEEEEe
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT----TA-----PKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT----Ta-----P~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      -|.+++. -+.|......   ..|+|.|.++.++  -|++    -+     ..-|.|-|+.--|+||+...|+|..
T Consensus        20 ~i~l~~T-RvI~~~~~~~---~si~i~N~~~~p~--LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~   89 (226)
T PRK15295         20 SIVVGGT-RLVFDGNNDE---SSINVENKDSKAN--LVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIR   89 (226)
T ss_pred             cEEeCce-EEEEeCCCce---eEEEEEeCCCCcE--EEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence            4778884 7777754333   8999999998753  3442    11     2359999999999999999999986

>PRK15211 fimbrial chaperone protein PefD; Provisional

Probab=88.18  E-value=6.3  Score=33.62  Aligned_cols=63  Identities=13%  Similarity=0.166  Sum_probs=45.7

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccC------CCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      -|.+++. -+.|+....   ..+|+|+|.++.++.-.....      ...-|.|-|+.--|+||+...|+|.+
T Consensus        23 ~v~l~~T-RvIy~~~~~---~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~   91 (229)
T PRK15211         23 AFVLNGT-RFIYDEGRK---NISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMK   91 (229)
T ss_pred             EEEECce-EEEEcCCCc---eEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            3777874 777774333   389999999987644332211      11249999999999999999999987

>PRK11385 putativi pili assembly chaperone; Provisional

Probab=85.96  E-value=5.7  Score=34.03  Aligned_cols=64  Identities=19%  Similarity=0.348  Sum_probs=46.0

Q ss_pred             CcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccC------------CCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTT------------aP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      --|.+++. -+.|+....   ...|+|.|.++.++.=.....            ....|.|-|+.--|+||+...|+|.+
T Consensus        26 A~v~l~~T-RvIy~~~~~---~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~  101 (236)
T PRK11385         26 AGVVVGGT-RFIFPADRE---SISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR  101 (236)
T ss_pred             eeEEeCce-EEEEcCCCc---eEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE
Confidence            34778884 777774333   389999999988643332111            11349999999999999999999987

>PRK15208 long polar fimbrial chaperone LpfB; Provisional

Probab=85.34  E-value=11  Score=31.83  Aligned_cols=63  Identities=13%  Similarity=0.275  Sum_probs=45.4

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCC--eEEEEeccC-CC---ceeEecCCeeEeCCCCeEEEEEEe
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKS--HVAFKFQTT-AP---KSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~--~VAFKVKTT-aP---~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      -|.++|. -+.|.....   ...|+|+|.+++  .+.+..-.. ..   .-|.|-|+.--|+||+...|.|..
T Consensus        22 gv~l~~T-RvI~~~~~~---~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~   90 (228)
T PRK15208         22 GVALSST-RVIYDGSKK---EASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVN   90 (228)
T ss_pred             cEEeCce-EEEEeCCCc---eEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEE
Confidence            4788884 777775433   389999999864  333332211 11   239999999999999999999986

>PRK15246 fimbrial assembly chaperone StbE; Provisional

Probab=84.28  E-value=7  Score=33.41  Aligned_cols=63  Identities=16%  Similarity=0.334  Sum_probs=45.6

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc-C-----CC----ceeEecCCeeEeCCCCeEEEEEEe
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT-T-----AP----KSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT-T-----aP----~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      -|.|++. -+.|.....   ...|+|.|.++.++.-..-. .     .|    .-|.|-|+.--|+||+...|.|.+
T Consensus        11 ~v~l~~T-RvI~~~~~~---~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~   83 (233)
T PRK15246         11 AVNIDRT-RIIFASDDV---AQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLL   83 (233)
T ss_pred             EEEECce-EEEEcCCCc---eEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEE
Confidence            3778884 777775333   38999999998754332211 1     11    159999999999999999999987

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.98  E-value=3.2  Score=30.77  Aligned_cols=51  Identities=18%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             CceEEEEEEEEcCCCCeEEEEeccC-----C---CceeE--ec-----------CCeeEeCCCCeEEEEEEe
Q 030354           90 GKQVRSAIKIKNTSKSHVAFKFQTT-----A---PKSCF--MR-----------PPGAILAPGESLIATVFK  140 (179)
Q Consensus        90 ~k~~~s~LtL~N~s~~~VAFKVKTT-----a---P~~Y~--Vr-----------P~~GiI~Pgesv~I~I~l  140 (179)
                      +...+..|+|+|.+++.+.|+|.-.     .   .+.|.  ..           |..=.|+||++..|.|++
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti   78 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTI   78 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEE
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEE
Confidence            4457799999999999999987644     0   11221  11           222368999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function

Probab=83.94  E-value=16  Score=28.04  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=44.2

Q ss_pred             ceEeecCCCceEEEEEEEEcCCCCeEEEEec-----cCCCceeE-------------------ec-CCeeEeCCCCeEEE
Q 030354           82 KLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQ-----TTAPKSCF-------------------MR-PPGAILAPGESLIA  136 (179)
Q Consensus        82 eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVK-----TTaP~~Y~-------------------Vr-P~~GiI~Pgesv~I  136 (179)
                      ...+...+|....-.|+|+|.+++.+-|+|.     |+..+..-                   |+ |..-.|+|+++..|
T Consensus        18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V   97 (121)
T PF06030_consen   18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTV   97 (121)
T ss_pred             eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEE
Confidence            5555567888888999999999999999975     33333221                   11 33357899999988


Q ss_pred             EEEeeccCCC
Q 030354          137 TVFKFVELPE  146 (179)
Q Consensus       137 ~I~l~~~~p~  146 (179)
                      .+.+.  .|.
T Consensus        98 ~~~i~--~P~  105 (121)
T PF06030_consen   98 TFTIK--MPK  105 (121)
T ss_pred             EEEEE--cCC
Confidence            88763  554

>PRK15192 fimbrial chaperone BcfG; Provisional

Probab=81.03  E-value=32  Score=29.50  Aligned_cols=60  Identities=13%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccC----------C----CceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT----------A----PKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTT----------a----P~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.++. .-+.|+....   ...|+|.|.++.+  |=|++.          .    ..-|.|-|+.--|+||+...|.|..
T Consensus        24 i~l~~-TRvIy~~~~k---~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~   97 (234)
T PRK15192         24 VVIGG-TRFIYHAGAP---ALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVY   97 (234)
T ss_pred             EEeCc-eEEEEcCCCc---eEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEE
Confidence            66676 3667664332   3899999999875  555551          1    1249999999999999999999987

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=80.01  E-value=2.8  Score=29.08  Aligned_cols=53  Identities=23%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             CCCceEEEEEEEEcCCCCeE-EEEeccCCCceeE--ecCCe-eEeCCCCeEEEEEEe
Q 030354           88 EAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCF--MRPPG-AILAPGESLIATVFK  140 (179)
Q Consensus        88 ~~~k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~--VrP~~-GiI~Pgesv~I~I~l  140 (179)
                      ..|+...-.++|+|....++ ..++.-..|.-..  ..|.. +-|.||++..+.+.+
T Consensus         2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V   58 (78)
T PF10633_consen    2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTV   58 (78)
T ss_dssp             -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEE
Confidence            35778889999999987543 3555555687777  45543 379999999998887

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		3e-04
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		7e-04

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP   L F       V + +K++N S   V FK +TTAP+   +RP   I+ PG ++  +
Sbjct: 13  DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVS 72
Query: 138 VF 139
           V 
Sbjct: 73  VM 74

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP + L F       V + +K++N S   V FK +TTAP+   +RP   I+ PG  +  +
Sbjct: 18  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVS 77
Query: 138 VF 139
           V 
Sbjct: 78  VM 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
2cri_A	147	Vesicle-associated membrane protein-associated pro	4e-25
1z9l_A	128	Vesicle-associated membrane protein-associated pro	9e-24
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	2e-23
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	5e-19
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	7e-10
1row_A	109	SSP-19, MSP-domain protein like family member; bet	5e-07
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	5e-04

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 94.0 bits (233), Expect = 4e-25
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 62  SSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM 121
           SS +  +    + L LDP + L F       V + +K++N S   V FK +TTAP+   +
Sbjct: 2   SSGSSGMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 61

Query: 122 RPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
           RP   I+ PG            + +  +    +KS+ KF + ++    ++  +  +
Sbjct: 62  RPNSGIIDPGSI-----VTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAV 112

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 89.7 bits (222), Expect = 9e-24
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 70  PKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILA 129
              + L LDP + L F       V + +K++N S   V FK +TTAP+   +RP   ++ 
Sbjct: 6   KHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 130 PGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
           PG  +  +V       +  +    +KS+ KF + ++    ++  +  +
Sbjct: 66  PGSIVTVSVM-----LQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAV 108

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 89.8 bits (222), Expect = 2e-23
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
           GSS  S      + K   L + PA +LYF      + ++ I + N +K+ VAFK +TTAP
Sbjct: 1   GSSGSSGKKPLSVFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAP 60

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
           +   ++P  +   PG S        +++  +    +   ++D+F I++ +++      P 
Sbjct: 61  EKYRVKPSNSSCDPGAS--------IDIIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPA 112

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 77.6 bits (191), Expect = 5e-19
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 65  ARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPP 124
           A+S+ P    +   P+ K+ F      +    IKI N     + +  +TT  +   + PP
Sbjct: 1   AQSVPPGD--INTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPP 58

Query: 125 GAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPEL 177
             +L P E ++  V          +      + D+  I        A   +  E 
Sbjct: 59  CGVLDPKEKVLMAVSCDTFNAATED-----LNNDRITIEWTNTPDGAAKQFRREW 108

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 52.9 bits (127), Expect = 7e-10
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 14/96 (14%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           + +DP     +P   G        I + S S +AFK +++  +   +RP    +      
Sbjct: 11  INVDPP-TGNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 66

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170
              + +          P      DK  I   +V A+
Sbjct: 67  KLDINR---------LPG-PPKEDKIVIQYAEVPAE 92

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 14/96 (14%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L  DP      P        S  K+ N     + FK +++      + P    + P  S 
Sbjct: 3   LTADPPA-CTVPAAGVS---STHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 58

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170
              + +              K  DK  +      AD
Sbjct: 59  DVVITR---------TAGAPK-EDKLVVHFASAPAD 84

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 74  RLKLDPANKLYFPYEAGKQVRSA-IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
           R  LD  +KL F     K      + ++N    +  F  +T  P S    P    L  GE
Sbjct: 23  RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIE--PAIGTLNVGE 80

Query: 133 SLIATV 138
           S+   V
Sbjct: 81  SMQLEV 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
2cri_A	147	Vesicle-associated membrane protein-associated pro	99.97
1z9l_A	128	Vesicle-associated membrane protein-associated pro	99.96
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.96
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.95
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.94
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.93
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.34
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	98.03
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.97
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.53
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	96.57
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	95.69
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	90.05
2co7_B	221	SAFB chaperone, putative fimbriae assembly chapero	88.03
2xg5_A	218	PAPD, chaperone protein PAPD; chaperone, chaperone	87.37
4djm_A	239	DRAB; chaperone, PILI; 2.52A {Escherichia coli}	85.4
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	84.19
1gyu_A	140	Adapter-related protein complex 1 gamma 1 subunit;	82.69
1l4i_A	206	SFAE protein; periplasmic chaperone, immunoglobuli	81.75
1klf_A	205	FIMC chaperone, chaperone protein FIMC; adhesin-ch	81.29
3rfr_A	419	PMOB; membrane, oxidoreductase; 2.68A {Methylocyst	81.12

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.97  E-value=3.1e-30  Score=202.90  Aligned_cols=103  Identities=27%  Similarity=0.447  Sum_probs=93.1

Q ss_pred             CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCC
Q 030354           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (179)
Q Consensus        71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~  150 (179)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|++   +|...+ 
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~-   86 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD-   86 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC-
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC-
Confidence            5678999998899999999999999999999999999999999999999999999999999999999998   675433 


Q ss_pred             CCCCCCCCeEEEEEEEeCCCccccCccC
Q 030354          151 PMYQKSRDKFKIISMKVKADVDYVPELV  178 (179)
Q Consensus       151 p~~~k~kDKFlVqs~~v~~~~d~~~elF  178 (179)
                       .+.+++|||+||++.++++.+.+.++|
T Consensus        87 -p~~~~kDKFlVqs~~~~~~~~d~~~~w  113 (147)
T 2cri_A           87 -PNEKSKHKFMVQTIFAPPNISDMEAVW  113 (147)
T ss_dssp             -TTCCSCCCEEEEEEECCTTCCCHHHHH
T ss_pred             -ccccCCCEEEEEEEEcCCCcccHHHHh
Confidence             357899999999999998775557776

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=99.96  E-value=7e-30  Score=195.91  Aligned_cols=103  Identities=26%  Similarity=0.444  Sum_probs=92.7

Q ss_pred             CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCC
Q 030354           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (179)
Q Consensus        71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~  150 (179)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|++   +|.... 
T Consensus         7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~-   82 (128)
T 1z9l_A            7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD-   82 (128)
T ss_dssp             CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC-
T ss_pred             CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC-
Confidence            4678999998899999999999999999999999999999999999999999999999999999999998   675433 


Q ss_pred             CCCCCCCCeEEEEEEEeCCCccccCccC
Q 030354          151 PMYQKSRDKFKIISMKVKADVDYVPELV  178 (179)
Q Consensus       151 p~~~k~kDKFlVqs~~v~~~~d~~~elF  178 (179)
                       .+.+++|||+||++.++++.+.+.++|
T Consensus        83 -p~~~~~dkF~V~s~~~~~~~~~~~~~w  109 (128)
T 1z9l_A           83 -PNEKSKHKFMVQTIFAPPNISDMEAVW  109 (128)
T ss_dssp             -TTCCCCCEEEEEEEECCTTCSCHHHHH
T ss_pred             -cccccCCEEEEEEEECCCCcchHHHHh
Confidence             246899999999999998875557776

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.96  E-value=4.2e-29  Score=192.27  Aligned_cols=102  Identities=19%  Similarity=0.265  Sum_probs=89.9

Q ss_pred             CCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCC
Q 030354           72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP  151 (179)
Q Consensus        72 ~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p  151 (179)
                      ...|.|+|.++|.|++++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|++   ++...+++
T Consensus         6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~~   82 (126)
T 1msp_A            6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAATE   82 (126)
T ss_dssp             CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGGS
T ss_pred             CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCCC
Confidence            345999999899999999999999999999999999999999999999999999999999999999998   67654432


Q ss_pred             CCCCCCCeEEEEEEEeCCCc--cccCccC
Q 030354          152 MYQKSRDKFKIISMKVKADV--DYVPELV  178 (179)
Q Consensus       152 ~~~k~kDKFlVqs~~v~~~~--d~~~elF  178 (179)
                        ...+|||+||++.++++.  |+..++|
T Consensus        83 --~~~kDKf~Vq~~~~p~~~~~~~~~~wf  109 (126)
T 1msp_A           83 --DLNNDRITIEWTNTPDGAAKQFRREWF  109 (126)
T ss_dssp             --CCSSCEEEEEEEECCTTCCSSCCTHHH
T ss_pred             --ccCCCEEEEEEEECCCCcchhhhHHhh
Confidence              345999999999999886  6765554

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.95  E-value=8.7e-29  Score=196.21  Aligned_cols=100  Identities=26%  Similarity=0.399  Sum_probs=88.2

Q ss_pred             CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCC
Q 030354           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (179)
Q Consensus        71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~  150 (179)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||++++|.|+|   ++.. + 
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-~-   89 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-T-   89 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS-C-
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc-c-
Confidence            4678999998899999999999999999999999999999999999999999999999999999999998   6653 2 


Q ss_pred             CCCCCCCCeEEEEEEEeC--CCc--cccCccC
Q 030354          151 PMYQKSRDKFKIISMKVK--ADV--DYVPELV  178 (179)
Q Consensus       151 p~~~k~kDKFlVqs~~v~--~~~--d~~~elF  178 (179)
                         .+++|||+||++.++  ++.  +.+.++|
T Consensus        90 ---~~~kDKFlVqs~~v~~~~~~~~~d~~~~w  118 (152)
T 1wic_A           90 ---VSAQDRFLIMAAEMEQSSGTGPAELSQFW  118 (152)
T ss_dssp             ---CCSSCCEEEEEEECCSSCCCSHHHHHHHH
T ss_pred             ---CCCCCEEEEEEEEcCCcCCCChhhHHHHH
Confidence               378999999999998  443  2335665

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.94  E-value=8.5e-27  Score=176.27  Aligned_cols=90  Identities=18%  Similarity=0.211  Sum_probs=79.7

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~~  154 (179)
                      |.|+|. +|.|.++.+   .+.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|++   ++.       .
T Consensus         3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~   68 (109)
T 1row_A            3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A   68 (109)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred             EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------C
Confidence            789997 799998844   59999999999999999999999999999999999999999999998   553       2


Q ss_pred             CCCCeEEEEEEEeCCCccccCccC
Q 030354          155 KSRDKFKIISMKVKADVDYVPELV  178 (179)
Q Consensus       155 k~kDKFlVqs~~v~~~~d~~~elF  178 (179)
                      .++|||+||++.++++...++|+|
T Consensus        69 ~~~dKflvq~~~~~~~~~d~~~~f   92 (109)
T 1row_A           69 PKEDKLVVHFASAPADATDAQAAF   92 (109)
T ss_dssp             CEEEEEEEEEEECCTTCSCHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCCHHHHh
Confidence            369999999999987754447777

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.93  E-value=1.5e-25  Score=171.50  Aligned_cols=91  Identities=22%  Similarity=0.284  Sum_probs=80.6

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCC
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY  153 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~  153 (179)
                      .+.++|. +|.|+++.|   .+.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|++   +++   +   
T Consensus        10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~---~---   76 (116)
T 1m1s_A           10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG---P---   76 (116)
T ss_dssp             SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC---C---
T ss_pred             eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC---C---
Confidence            5889995 999998754   69999999999999999999999999999999999999999999998   563   1   


Q ss_pred             CCCCCeEEEEEEEeCCCccccCccC
Q 030354          154 QKSRDKFKIISMKVKADVDYVPELV  178 (179)
Q Consensus       154 ~k~kDKFlVqs~~v~~~~d~~~elF  178 (179)
                       .++|||+||++.++++...++|+|
T Consensus        77 -~k~DKflVq~~~~~~d~~d~~~~f  100 (116)
T 1m1s_A           77 -PKEDKIVIQYAEVPAEETDPMAPF  100 (116)
T ss_dssp             -SCEEEEEEEEEEECTTCCCTTHHH
T ss_pred             -CCCCEEEEEEEECCCCCCCHHHHH
Confidence             359999999999997664458887

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=2.7e-06  Score=63.48  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=63.6

Q ss_pred             CcEEEcCCCceEeecCC-CceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCC
Q 030354           73 RRLKLDPANKLYFPYEA-GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP  151 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~~~-~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p  151 (179)
                      ..|++ | +.|.|..-. +......|.|+|.++.++.|++++.+  -|.|.|..|.|.||+++.|.|+.   .|...   
T Consensus        24 ~~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F---~P~~~---   93 (122)
T 2ys4_A           24 AILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEF---EPQSV---   93 (122)
T ss_dssp             CCCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEE---CCSSS---
T ss_pred             cEECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEE---EcCCC---
Confidence            34555 6 589987644 77788999999999999999999854  69999999999999999999998   66532   


Q ss_pred             CCCCCCCeEEEEE
Q 030354          152 MYQKSRDKFKIIS  164 (179)
Q Consensus       152 ~~~k~kDKFlVqs  164 (179)
                        ......+.|..
T Consensus        94 --g~~~~~l~v~~  104 (122)
T 2ys4_A           94 --GDHSGRLIVCY  104 (122)
T ss_dssp             --BCCCCBCEEEE
T ss_pred             --ccEEEEEEEEE
Confidence              34566666554

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=2e-05  Score=57.03  Aligned_cols=67  Identities=10%  Similarity=0.128  Sum_probs=57.1

Q ss_pred             CcEEEcCCCceEeecC-CCceEEEEEEEEcCCCCeEEEEeccCCC---ceeEecCCeeEeCCCCeEEEEEEe
Q 030354           73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAP---KSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~~-~~k~~~s~LtL~N~s~~~VAFKVKTTaP---~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      ..+.+++. .|.|-.- .|...+..++|+|+++.++.|++.....   ..|.+.|..|.|.||++..|.|++
T Consensus         8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f   78 (112)
T 2e6j_A            8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF   78 (112)
T ss_dssp             CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred             CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence            55889995 8999764 4777889999999999999999864221   569999999999999999999998

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.97  E-value=4.8e-05  Score=58.67  Aligned_cols=68  Identities=16%  Similarity=0.230  Sum_probs=57.9

Q ss_pred             CcEEEcCCCceEeec-CCCceEEEEEEEEcCCCCeEEEEeccC------CCceeEecCCeeEeCCCCeEEEEEEee
Q 030354           73 RRLKLDPANKLYFPY-EAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKF  141 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~-~~~k~~~s~LtL~N~s~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pgesv~I~I~l~  141 (179)
                      +-+.|++ ++|.|-. ..++..+..|+|+|++.-+.-|++.-.      .+..+.|.|..|.|.||+++.|.|++.
T Consensus        25 P~i~v~~-~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~   99 (140)
T 3qbt_B           25 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY   99 (140)
T ss_dssp             CCEEESC-CEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred             CceEeee-eeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence            4577888 5999985 457788899999999999999998853      345789999999999999999999984

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.53  E-value=0.00043  Score=60.77  Aligned_cols=69  Identities=17%  Similarity=0.243  Sum_probs=58.2

Q ss_pred             CcEEEcCCCceEeec-CCCceEEEEEEEEcCCCCeEEEEeccC------CCceeEecCCeeEeCCCCeEEEEEEeec
Q 030354           73 RRLKLDPANKLYFPY-EAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKFV  142 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~-~~~k~~~s~LtL~N~s~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pgesv~I~I~l~~  142 (179)
                      .-+.|++ ++|.|.. .++...+..|+|+|++.-++.|++...      .+..++|.|..|.|.||+++.|.|++.+
T Consensus        28 P~v~v~~-~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v  103 (366)
T 3qis_A           28 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  103 (366)
T ss_dssp             CCEEESC-SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CeEEEec-CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence            4578888 5999965 568889999999999999999998753      2344789999999999999999999853

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=96.57  E-value=0.0085  Score=48.57  Aligned_cols=64  Identities=16%  Similarity=0.180  Sum_probs=55.4

Q ss_pred             EEEcCCCceEeecCC-CceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEA-GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~-~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |+++| +.|.|..-. |+.....++++|+++.++-++.-.. |..+.+++..+.|.||++..|.|++
T Consensus         3 i~~~~-~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~   67 (220)
T 2qsv_A            3 LQVSN-ARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL   67 (220)
T ss_dssp             EEESC-SEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred             eEEec-CeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence            88999 599998744 6666789999999999999886543 7778889999999999999999998

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=95.69  E-value=0.043  Score=44.35  Aligned_cols=66  Identities=18%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEE-EeccCCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        72 ~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAF-KVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      ...|.++ . .+.|-.-.|+..+..++|+|..+.++.. +|+++. +...+.++.+.|.||++..|.|++
T Consensus       117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~  183 (220)
T 2qsv_A          117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV  183 (220)
T ss_dssp             CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred             CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence            3458888 4 8999854488888999999999999877 788765 678888999999999999999998

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=90.05  E-value=1.6  Score=36.47  Aligned_cols=63  Identities=14%  Similarity=0.188  Sum_probs=45.6

Q ss_pred             cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCC----------CceeEecCCeeEeCCCCeEEEEEEe
Q 030354           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA----------PKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTa----------P~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      -|.|+|. -+.|+.....   .+|+|+|.++.++.--+-..+          ..-|.|-|+.--|+||+...|.|.+
T Consensus        29 ~v~i~~T-RvIy~~~~k~---~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~  101 (257)
T 3q48_A           29 GLIAQGT-RVVFPASERE---VTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY  101 (257)
T ss_dssp             --CCSCS-EEEEETTCSE---EEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE
T ss_pred             eEEEcce-EEEEeCCCcE---EEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE
Confidence            4777884 7777754333   899999999887654433211          1249999999999999999999986

>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B

Probab=88.03  E-value=4.3  Score=33.00  Aligned_cols=62  Identities=11%  Similarity=0.262  Sum_probs=47.1

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccC-----CCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.|++. -+.|+.....   ..|+|+|.++.++.--+..-     ...-|.|-|+.--|+||+...|.|.+
T Consensus        14 v~i~~T-RvIy~~~~k~---~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   80 (221)
T 2co7_B           14 VKLGAT-RVIYHAGTAG---ATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR   80 (221)
T ss_dssp             CEESCS-EEEEETTSSC---EEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred             EEEcce-EEEEcCCCCE---EEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE
Confidence            677884 7777755544   79999999988665443221     12359999999999999999999987

>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A

Probab=87.37  E-value=4.5  Score=32.79  Aligned_cols=62  Identities=18%  Similarity=0.234  Sum_probs=46.5

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCC-eEEEEeccCC-------CceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~-~VAFKVKTTa-------P~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.|++. -+.|+.....   ..|+|+|.++. ++.--+...+       ..-|.|-|+.--|+||+...|.|.+
T Consensus         2 v~l~~T-RvIy~~~~k~---~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   71 (218)
T 2xg5_A            2 VSLDRT-RAVFDGSEKS---MTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST   71 (218)
T ss_dssp             EEESCS-EEEEETTSSE---EEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred             cEeCce-EEEEeCCCCE---EEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe
Confidence            567773 7777755443   79999999987 6655443221       2349999999999999999999987

>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}

Probab=85.40  E-value=5.7  Score=32.77  Aligned_cols=62  Identities=13%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc-----CCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT-----TaP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.|++. -+.|+.....   ..|+|+|..+.++.--+..     ....-|.|-|+.--|+||+...|+|.+
T Consensus        24 v~l~~T-RvIy~~~~k~---~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~   90 (239)
T 4djm_A           24 LHLGAT-RVVYNPASSG---ETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR   90 (239)
T ss_dssp             CEESCS-EEEECTTSSC---EEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE
T ss_pred             EEEcce-EEEEeCCCCE---EEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            678884 7777755444   7999999988765433221     112349999999999999999999986

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=84.19  E-value=6.1  Score=35.23  Aligned_cols=69  Identities=20%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEe---------cCC------------eeEeC
Q 030354           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------RPP------------GAILA  129 (179)
Q Consensus        71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~V---------rP~------------~GiI~  129 (179)
                      ....+.++-. .-+|. .+|+.++.+++++|.++++|-..=-+|+.-+|.-         -|-            ..=|.
T Consensus       246 ~~~~V~~~v~-~A~Y~-vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~  323 (382)
T 1yew_A          246 PAPTVSVKVE-DATYR-VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLA  323 (382)
T ss_dssp             CCCSEEEEEE-EEEEE-SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBC
T ss_pred             CCCceEEEee-ccEEe-cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcC
Confidence            3556777774 66665 6799999999999999999998877777777743         221            12389


Q ss_pred             CCCeEEEEEEee
Q 030354          130 PGESLIATVFKF  141 (179)
Q Consensus       130 Pgesv~I~I~l~  141 (179)
                      |||+.+|.|...
T Consensus       324 PGETr~~~v~a~  335 (382)
T 1yew_A          324 PGETRTVDVTAS  335 (382)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCceeEEEEEee
Confidence            999999999874

>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2

Probab=82.69  E-value=11  Score=28.53  Aligned_cols=68  Identities=18%  Similarity=0.298  Sum_probs=42.9

Q ss_pred             ceEEEEEEEEcCCCCeE-EEEeccCCCceeEec--CCee-EeCCCCe--EEEEEEeeccCCCCCCCCCCCCCCCeEEEEE
Q 030354           91 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGES--LIATVFKFVELPENNEKPMYQKSRDKFKIIS  164 (179)
Q Consensus        91 k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pges--v~I~I~l~~~~p~~~e~p~~~k~kDKFlVqs  164 (179)
                      +...-.++..|.+..+| -|.++.--|+.|.++  |..| .|.|+..  +.-.+.+  ..+.      ..+.+=|+.|.+
T Consensus        47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I--~n~~------~~~l~LR~klsY  118 (140)
T 1gyu_A           47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTY  118 (140)
T ss_dssp             TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEE--ECTT------CCCCCEEEEEEE
T ss_pred             CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEE--eCCC------CCCEEEEEEEEE
Confidence            44566788999887655 788888888888665  6666 6888433  3333332  1332      123566777766


Q ss_pred             EE
Q 030354          165 MK  166 (179)
Q Consensus       165 ~~  166 (179)
                      ..
T Consensus       119 ~~  120 (140)
T 1gyu_A          119 NH  120 (140)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1

Probab=81.75  E-value=10  Score=30.35  Aligned_cols=62  Identities=10%  Similarity=0.173  Sum_probs=45.6

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCC-CeEEEEeccC-----CCceeEecCCeeEeCCCCeEEEEEE-e
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSK-SHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVF-K  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~-~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pgesv~I~I~-l  140 (179)
                      |.|++ .-+.|+.....   ..|+|+|.++ .++.--+..-     ...-|.|-|+.--|+||+...|.|. +
T Consensus         2 v~l~~-TRvIy~~~~k~---~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~   70 (206)
T 1l4i_A            2 VALGA-TRVIYPEGQKQ---VQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA   70 (206)
T ss_dssp             EEESC-SEEEEETTCSE---EEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC
T ss_pred             eEeCc-eEEEEeCCCcE---EEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec
Confidence            56777 37777755443   7999999986 6654443221     1235999999999999999999998 6

>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C

Probab=81.29  E-value=6.2  Score=31.63  Aligned_cols=62  Identities=8%  Similarity=0.187  Sum_probs=46.2

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCC-eEEEEecc-----CCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~-~VAFKVKT-----TaP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.|++. -+.|+.....   ..|+|+|.++. ++.--+-.     ....-|.|-|+.--|+||+...|.|.+
T Consensus         2 v~l~~T-RvIy~~~~k~---~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   69 (205)
T 1klf_A            2 VALGAT-RVIYPAGQKQ---VQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD   69 (205)
T ss_dssp             EEESCS-EEEEETTCSE---EEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEE
T ss_pred             eEecce-EEEEeCCCcE---EEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEe
Confidence            567773 7777755443   79999999987 65544322     122459999999999999999999986

>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A

Probab=81.12  E-value=5  Score=36.16  Aligned_cols=65  Identities=20%  Similarity=0.213  Sum_probs=50.4

Q ss_pred             CcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEe---------------------cCCeeEeCCC
Q 030354           73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------------------RPPGAILAPG  131 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~V---------------------rP~~GiI~Pg  131 (179)
                      ..++++-. .-+|. .+|+..+.+|+++|.++++|-..=-+|+.-+|.=                     .|+  -|.||
T Consensus       282 ~~V~~~v~-~A~Y~-vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG  357 (419)
T 3rfr_A          282 EQVTTELN-GGVYK-VPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG  357 (419)
T ss_dssp             CCCEEEEE-EEEEE-SSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred             CceEEEEe-ceEEe-cCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence            34666664 56666 6789999999999999999988866777777651                     122  59999


Q ss_pred             CeEEEEEEee
Q 030354          132 ESLIATVFKF  141 (179)
Q Consensus       132 esv~I~I~l~  141 (179)
                      |+.+|+|...
T Consensus       358 ETrt~~V~a~  367 (419)
T 3rfr_A          358 ESKEIVVKIQ  367 (419)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEEEEEee
Confidence            9999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	3e-21
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	1e-16
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	2e-16
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	5e-16

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.7 bits (204), Expect = 3e-21
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 8/120 (6%)

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
           GSS  S      + K   L + PA +LYF      + ++ I + N +K+ VAFK +TTAP
Sbjct: 1   GSSGSSGKKPLSVFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAP 60

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
           +   ++P  +   PG S+   V     L           ++D+F I++ +++      P 
Sbjct: 61  EKYRVKPSNSSCDPGASIDIIVSPHGGLT--------VSAQDRFLIMAAEMEQSSGTGPA 112

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.3 bits (172), Expect = 1e-16
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           ++  P  K+ F      +    IK+ N+S   + +  +TT  K   + PP  +L P E++
Sbjct: 7   IQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAV 66

Query: 135 IATVF--KFVELPENNEKPMYQKSRDKFKIISMKVKADVD 172
           +  V    F    E+        + D+  +          
Sbjct: 67  LLAVSCDAFAFGQED-------TNNDRITVEWTNTPDGAA 99

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 69.1 bits (169), Expect = 2e-16
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           + +DP     +P   G    S   I + S S +AFK +++  +   +RP    +      
Sbjct: 4   INVDP-PTGNYPATGGN---STHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 59

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
              + +                 DK  I   +V A+       
Sbjct: 60  KLDINRLPG----------PPKEDKIVIQYAEVPAEETDPMAP 92

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.9 bits (166), Expect = 5e-16
 Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 14/103 (13%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L  DP      P      V S  K+ N     + FK +++      + P    + P  S 
Sbjct: 1   LTADPPA-CTVP---AAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 56

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
              + +              K  DK  +      AD       
Sbjct: 57  DVVITR---------TAGAPK-EDKLVVHFASAPADATDAQAA 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.95
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.93
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.92
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.91
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	95.22
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	94.58
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	93.62
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	91.01
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	87.61
d1gyva_	120	Gamma1-adaptin domain {Human (Homo sapiens) [TaxId	80.81

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.1e-27  Score=181.08  Aligned_cols=102  Identities=19%  Similarity=0.266  Sum_probs=89.3

Q ss_pred             CCCCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCC
Q 030354           69 LPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENN  148 (179)
Q Consensus        69 ~p~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~  148 (179)
                      +|++. |.++|.++|+|.+++++.+++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|++   ++...
T Consensus         2 ~p~~~-l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~---~~~~~   77 (124)
T d1grwa_           2 VPPGD-IQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSC---DAFAF   77 (124)
T ss_dssp             CCCCC-EEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CCCCG
T ss_pred             cCCCc-eEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEE---ecCCC
Confidence            55554 999999999999999999999999999999999999999999999999999999999999999998   66543


Q ss_pred             CCCCCCCCCCeEEEEEEEeCCCc--cccCc
Q 030354          149 EKPMYQKSRDKFKIISMKVKADV--DYVPE  176 (179)
Q Consensus       149 e~p~~~k~kDKFlVqs~~v~~~~--d~~~e  176 (179)
                      .  ...+++|||+|+++.++++.  ++..+
T Consensus        78 ~--~~~~~~dkF~v~~~~~p~~~~~~~~~~  105 (124)
T d1grwa_          78 G--QEDTNNDRITVEWTNTPDGAAKQFRRE  105 (124)
T ss_dssp             G--GSCCTTCEEEEEEEECCSSCCSSCCGG
T ss_pred             C--CcccCCceEEEEEEECCCccHHHHHHH
Confidence            2  34678999999999998554  55333

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.6e-26  Score=181.44  Aligned_cols=93  Identities=27%  Similarity=0.424  Sum_probs=84.7

Q ss_pred             CCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCC
Q 030354           72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP  151 (179)
Q Consensus        72 ~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p  151 (179)
                      +++|.|+|.++|+|.++.++++++.|+|+|.++.+||||||||+|++|+|||+.|+|.||++++|.|++   ++.     
T Consensus        16 ~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~---~~~-----   87 (152)
T d1wica_          16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGG-----   87 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSS-----
T ss_pred             CCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEE---CCC-----
Confidence            578999998899999999999999999999999999999999999999999999999999999999998   443     


Q ss_pred             CCCCCCCeEEEEEEEeCCCcc
Q 030354          152 MYQKSRDKFKIISMKVKADVD  172 (179)
Q Consensus       152 ~~~k~kDKFlVqs~~v~~~~d  172 (179)
                      ....++|||+|+++.++++.+
T Consensus        88 ~~~~~kdKFli~~~~v~~~~~  108 (152)
T d1wica_          88 LTVSAQDRFLIMAAEMEQSSG  108 (152)
T ss_dssp             SCCCSSCCEEEEEEECCSSCC
T ss_pred             CcccCCCcEEEEEEEeCCCCC
Confidence            235789999999999976653

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=3.2e-25  Score=165.60  Aligned_cols=92  Identities=22%  Similarity=0.281  Sum_probs=82.5

Q ss_pred             CcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCC
Q 030354           73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM  152 (179)
Q Consensus        73 ~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~  152 (179)
                      .+|.|+|. +|.|+++.|.   +.++|+|.++.+||||||||+|++|+|+|+.|+|+||++++|.|++   +++.     
T Consensus         2 ~~L~i~P~-~l~F~~~~g~---~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~---~~~~-----   69 (109)
T d1m1sa_           2 SMINVDPP-TGNYPATGGN---STHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPGP-----   69 (109)
T ss_dssp             CSEEEESS-EEEECTTCEE---EEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSCC-----
T ss_pred             ceEEEeCC-EEEeecCCCc---EEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEe---CCCC-----
Confidence            47999995 9999988664   8899999999999999999999999999999999999999999998   5532     


Q ss_pred             CCCCCCeEEEEEEEeCCCccccCccC
Q 030354          153 YQKSRDKFKIISMKVKADVDYVPELV  178 (179)
Q Consensus       153 ~~k~kDKFlVqs~~v~~~~d~~~elF  178 (179)
                        ..+|||+|+++.++++.+.++++|
T Consensus        70 --~~~DKf~I~~~~~~~~~~d~~~~f   93 (109)
T d1m1sa_          70 --PKEDKIVIQYAEVPAEETDPMAPF   93 (109)
T ss_dssp             --SCEEEEEEEEEEECTTCCCTTHHH
T ss_pred             --CCCCEEEEEEEECCCCCcCHHHHH
Confidence              358999999999999987778887

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=5.9e-25  Score=164.06  Aligned_cols=90  Identities=18%  Similarity=0.211  Sum_probs=80.2

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~~  154 (179)
                      |.++|. +|.|+...|   .+.++|+|.++.+||||||||+|++|+|+|+.|+|+||+++.|.|++   +|.       .
T Consensus         1 l~~dP~-~~~f~~~~g---~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~---~~~-------~   66 (107)
T d1rowa_           1 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A   66 (107)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred             CeeCCC-cceeeCCCC---eEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEe---CCC-------C
Confidence            679996 899997754   48999999999999999999999999999999999999999999998   553       1


Q ss_pred             CCCCeEEEEEEEeCCCccccCccC
Q 030354          155 KSRDKFKIISMKVKADVDYVPELV  178 (179)
Q Consensus       155 k~kDKFlVqs~~v~~~~d~~~elF  178 (179)
                      ..+|||+||+++++++.+.++++|
T Consensus        67 ~~~DKf~I~~~~~~~~~~d~~~~f   90 (107)
T d1rowa_          67 PKEDKLVVHFASAPADATDAQAAF   90 (107)
T ss_dssp             CEEEEEEEEEEECCTTCSCHHHHH
T ss_pred             CCCCEEEEEEEECCCCCcCHHHHh
Confidence            348999999999999886668877

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.22  E-value=0.096  Score=37.51  Aligned_cols=62  Identities=11%  Similarity=0.262  Sum_probs=48.1

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccC-----CCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.|+. .-+.|......   ..|+|+|.++.++...+...     ....|.|-|+.--|+||+...|.|..
T Consensus         7 v~l~~-TRvi~~~~~~~---~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~   73 (128)
T d2co7b1           7 VKLGA-TRVIYHAGTAG---ATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR   73 (128)
T ss_dssp             CEESC-SEEEEETTSSC---EEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred             EEECC-eEEEEcCCCCE---EEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEe
Confidence            56777 47888754433   88999999988776665422     23469999999999999999999986

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=94.58  E-value=0.24  Score=36.00  Aligned_cols=62  Identities=15%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCC-------ceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP-------KSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP-------~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.|+.. -+.|......   ..|+|+|.++.++...+.....       .-|.|-|+.-.|+||+...|.|..
T Consensus         8 v~l~~T-RvIy~~~~~~---~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~   76 (141)
T d1p5va1           8 VTIGES-RIIYPLDAAG---VMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ   76 (141)
T ss_dssp             EEESCS-EEEEETTCSC---EEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEE
T ss_pred             eEeCcc-EEEEcCCCcE---EEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEe
Confidence            677774 7777754333   7899999999988887754432       239999999999999999999975

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.4  Score=33.92  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCC-eEEEEeccC--C-----CceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTT--A-----PKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~-~VAFKVKTT--a-----P~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      +.|+. .-+.|.....   ...++|+|.+++ ++.-.....  .     ..-|.|-|+.--|+||+...|.|.+
T Consensus         2 i~l~~-TRvI~~~~~~---~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~   71 (124)
T d2j2za1           2 VSLDR-TRAVFDGSEK---SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST   71 (124)
T ss_dssp             EEESC-SEEEEETTSS---EEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred             eEeCC-cEEEEeCCCC---EEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEE
Confidence            45666 3677774332   388999998764 443332221  1     2239999999999999999999986

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=91.01  E-value=1.6  Score=30.50  Aligned_cols=62  Identities=8%  Similarity=0.209  Sum_probs=44.1

Q ss_pred             EEEcCCCceEeecCCCceEEEEEEEEcCCCC-eEEEE-----eccCCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFK-----FQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~-~VAFK-----VKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      |.++. .-+.|......   +.++|+|.+++ ++.-.     ...+....|.|-|+.--|+||+...|.|..
T Consensus         2 i~l~~-TRvI~~~~~~~---~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~   69 (121)
T d3bwuc1           2 VALGA-TRVIYPAGQKQ---EQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD   69 (121)
T ss_dssp             EEESC-SEEEEETTCSE---EEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEE
T ss_pred             eeECc-eEEEEcCCCce---EEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEe
Confidence            45566 36777644333   89999998754 43322     123444569999999999999999999986

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=87.61  E-value=0.29  Score=33.77  Aligned_cols=53  Identities=25%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             CCCceEEEEEEEEcCCCCeE-EEEeccCCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354           88 EAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (179)
Q Consensus        88 ~~~k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l  140 (179)
                      ++|+.....++|+|.....+ ..++-...|.-..+.|..--|.||++..+.+.+
T Consensus        14 ~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~V   67 (103)
T d1w8oa1          14 EPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTI   67 (103)
T ss_dssp             CTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEE
T ss_pred             CCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEE
Confidence            56888889999999997654 346666789999999988889999999999887

>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: gamma-adaptin C-terminal appendage domain-like
domain: Gamma1-adaptin domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.81  E-value=5.1  Score=27.80  Aligned_cols=68  Identities=18%  Similarity=0.309  Sum_probs=45.0

Q ss_pred             ceEEEEEEEEcCCCCeE-EEEeccCCCceeEec--CCee-EeCC--CCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEE
Q 030354           91 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAP--GESLIATVFKFVELPENNEKPMYQKSRDKFKIIS  164 (179)
Q Consensus        91 k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~P--gesv~I~I~l~~~~p~~~e~p~~~k~kDKFlVqs  164 (179)
                      +...-.++..|.+..+| .|.++---|+.|.++  |..| .|.|  +..+.=.+.+  ..|.      ....+=|+.|.+
T Consensus        27 ~~~~i~~~~~N~s~~~i~~f~fqaAVPK~~kL~l~ppS~~~l~~~~~~~itQ~~~i--~n~~------~~~l~lr~klsY   98 (120)
T d1gyva_          27 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQELSPSSSVVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTY   98 (120)
T ss_dssp             TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGSCCEEEEEEE--ECTT------CCCCCEEEEEEE
T ss_pred             ceEEEEEEEEeCCcCceeeEEEEEECCCCcEEEEeCCCCCcccCCCCCCeEEEEEE--ECCC------CCCEEEEEEEEE
Confidence            45667778999998766 899998899988776  5555 7877  3433322222  1332      234677888887


Q ss_pred             EE
Q 030354          165 MK  166 (179)
Q Consensus       165 ~~  166 (179)
                      ..
T Consensus        99 ~~  100 (120)
T d1gyva_          99 NH  100 (120)
T ss_dssp             EE
T ss_pred             EE
Confidence            74