Citrus Sinensis ID: 030367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MLSNEQKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHcHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLSNEQKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMragplyvsmfkPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGkakeentiddrgtwsselssekvpllqnstedtkccpsv
Flexible Loop (DISEMBL)
MLSNEQKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEentiddrgtwsselssekvpllqnstedtkccpsv
Low Complexity Region (SEG)
MLSNEQKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Disordered region (IsUnstruct)
*******MMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK************************************
Disordered Region (DISOPRED)
MLSNEQKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG***************************************
Disordered Region (DISEMBL)
MLSNEQKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTID******************************
Disordered Region (DISPRO)
MLSNEQKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA*************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSNEQKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.910	0.441	0.353	6e-26
Q9FL08	368	WAT1-related protein At5g	no	no	0.853	0.413	0.345	4e-21
Q56X95	355	WAT1-related protein At3g	no	no	0.814	0.408	0.346	5e-20
F4HZQ7	389	WAT1-related protein At1g	no	no	0.741	0.339	0.348	6e-20
Q9LV20	383	WAT1-related protein At3g	no	no	0.876	0.407	0.314	1e-19
Q8VYZ7	360	WAT1-related protein At3g	no	no	0.617	0.305	0.410	1e-19
F4IYZ0	358	WAT1-related protein At3g	no	no	0.803	0.399	0.35	2e-19
F4KHA8	370	WAT1-related protein At5g	no	no	0.814	0.391	0.335	3e-19
Q945L4	339	WAT1-related protein At5g	no	no	0.820	0.430	0.353	3e-19
Q9LPF1	370	WAT1-related protein At1g	no	no	0.904	0.435	0.341	4e-19

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  117 bits (292), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 19/181 (10%)

Query: 10  AFIILEFF--------QAITLKEFPALIVMLCYQYFFSTILAAMFSL-TVVTELSAWKLR 60
            F+ +E+F        Q   ++E+PA   ++C+     +   A+ +L T   +L AWK++
Sbjct: 184 GFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIK 243

Query: 61  LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 120
            ++ L +I  S + G+    T+  W L   GPL+V+MFKPL+I  +  MGVI   D L++
Sbjct: 244 PNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYI 303

Query: 121 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSE----------KVPLLQNSTE 170
           GSL+GA +I IGFY VMWGKAKE   ++D    + E ++E          K PLL++   
Sbjct: 304 GSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANEADLDSPSGSQKAPLLESYKN 363

Query: 171 D 171
           D
Sbjct: 364 D 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 7/159 (4%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           Q   ++ +P  I ++ +   F+T+++    L   + L++W L+ D+ L AI YS V  + 
Sbjct: 215 QTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWVLKPDISLAAIIYSGVFVSL 274

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
           F      W L   GP+Y+S+F+PL+I  +  MG I  GD L LGS++G++I+ IGFY V+
Sbjct: 275 FSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIFLGDALHLGSVIGSMILCIGFYTVI 334

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCP 176
           WGKA+E+      G       SE+ PLL     +    P
Sbjct: 335 WGKAREDTIKTVAG-------SEQSPLLLTHIIEDGAFP 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTV-VTELSAWKLRLDVGLFAIAYSAVIGA 76
           QA  +K +PA   +  + +  ++IL ++  +       S W +  D+ L  I    +   
Sbjct: 207 QAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWIIHFDITLVCIVVGGIFNP 266

Query: 77  AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136
            +   + LW +   GP+Y+++F+PL+IL + +MG I  GD  +LGSLVG ++I +GFY V
Sbjct: 267 GYYA-IHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSFYLGSLVGGILISLGFYTV 325

Query: 137 MWGKAKEENTIDDRGTWSSELS-SEKVPLLQNSTED 171
           MWGKAKE  T          LS SE+ PLL  + +D
Sbjct: 326 MWGKAKEGKT--------QFLSLSEETPLLDENIDD 353

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 76/132 (57%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           Q+ TLK++PA + +        T+     SL  V +LSAWK+  D  LFA AYS VI + 
Sbjct: 212 QSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLSAWKIGFDSNLFAAAYSGVICSG 271

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
               +    +   GP++V+ F PL ++ +  +GV++  + + LGS++G + I++G Y V+
Sbjct: 272 VAYYVQGVVMRERGPVFVATFNPLCVVITAALGVVVLSESIHLGSVIGTLFIIVGLYTVV 331

Query: 138 WGKAKEENTIDD 149
           WGK K++   DD
Sbjct: 332 WGKGKDKRMTDD 343

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 87/156 (55%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           QA  LK++PA + +  +  FF  I   + +L V T+L+ W +     LF I Y+ +I + 
Sbjct: 225 QAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASG 284

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
            +  L  WC+ ++GP++V++F+PL  L    M  +I GD L+ G +VGAV I++G Y+V+
Sbjct: 285 LVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVL 344

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTK 173
           WGK +E     +      E  ++ +   Q+   +++
Sbjct: 345 WGKNEERKLALEESQQDPESLTKHLLEAQHKKSNSE 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYZ7|WTR20_ARATH WAT1-related protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 7/117 (5%)

Query: 55  SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIF 114
           S W +  D+ L  I   A++ + +   +  W +   GPLY+++FKPL+IL + VMG I  
Sbjct: 249 SVWIIHFDITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFL 307

Query: 115 GDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 171
            D L+LG L+G ++I +GFY VMWGKA EE    D+ ++S +   EK PLL N   D
Sbjct: 308 NDSLYLGCLIGGILITLGFYAVMWGKANEE---KDQLSFSEK---EKTPLLLNRKND 358

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 17/160 (10%)

Query: 18  QAITLKEFP-----ALIVMLCYQYFFSTILAAMFSLTV-VTELSAWKLRLDVGLFAIAYS 71
           Q   ++E+P     +++ +LC      +I+ +M  L V     S W +  D+ LF I  +
Sbjct: 208 QTHIMREYPEAFTVSILYILCI-----SIVTSMIGLVVEKNNPSIWIIHFDITLFTIVTT 262

Query: 72  AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI 131
            +I + +   +  W +    PLY+++FKPL+IL + VMG I   D L+LG L+G ++I +
Sbjct: 263 GIITSVYYV-IHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFLNDSLYLGCLIGGILITL 321

Query: 132 GFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 171
           GFYVVMWGKA EE     +    S    EK PLL +   D
Sbjct: 322 GFYVVMWGKANEE-----KNKLLSFSGKEKTPLLLSGKND 356

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 92/152 (60%), Gaps = 7/152 (4%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           Q   ++ +P  I ++      +T+++A   L    +L+++ L+  V L ++ YS  + ++
Sbjct: 216 QTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFILKPGVSLASVMYSGGLVSS 275

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
           F + +  W L   GP+Y+S+FKPL+I+ +  MGV+  GD L+LGS++G++I+ +GFY V+
Sbjct: 276 FGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLGDALYLGSVIGSLILSLGFYTVI 335

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQNST 169
           WGKA+E++     GT       E+ PLL + T
Sbjct: 336 WGKAREDSIKTVAGT-------EQSPLLPSHT 360

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 4/150 (2%)

Query: 19  AITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           A T+  +P A++V L +    + + A +  L       AW +R D+ L  +  + ++ + 
Sbjct: 190 AHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVVATGILNSG 249

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
           +   +  W +   GP+Y+SMFKPL+IL + V   I  G+ L+LGS++G ++I IGFY+V+
Sbjct: 250 YYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVMGGILISIGFYMVL 308

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQN 167
           WGKAKE+  +D  G   S   S   PLL N
Sbjct: 309 WGKAKEDK-VDIIGAIESS-PSHNAPLLDN 336

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 12/173 (6%)

Query: 10  AFIILEFFQAITLKEFPA---LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLF 66
           AF IL   Q+ TLK +PA   L+ ++C      TIL A+ SL +V + SAWK+ +D G  
Sbjct: 198 AFFIL---QSYTLKVYPAELSLVTLIC---GIGTILNAIASLIMVRDPSAWKIGMDSGTL 251

Query: 67  AIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA 126
           A  YS V+ +     +    + + GP++ + F P+ ++ +  +G ++  + + LGS++GA
Sbjct: 252 AAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGA 311

Query: 127 VIIVIGFYVVMWGKAKEE-NTIDDR-GTWSSELSSEKVPLLQNSTEDTKCCPS 177
           V IV+G Y V+WGK+K+E N +D++    S EL    V + Q +  D    P+
Sbjct: 312 VFIVLGLYSVVWGKSKDEVNPLDEKIVAKSQELPITNV-VKQTNGHDVSGAPT 363

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.865	0.432	0.545	2e-42
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.820	0.421	0.516	1e-34
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.853	0.433	0.490	2e-34
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.853	0.433	0.483	2e-33
224099697	355	predicted protein [Populus trichocarpa]	0.870	0.436	0.477	1e-32
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.831	0.426	0.444	5e-32
296086518	356	unnamed protein product [Vitis vinifera]	0.859	0.429	0.457	5e-31
147790133	336	hypothetical protein VITISV_015327 [Viti	0.893	0.473	0.402	5e-31
147778659	335	hypothetical protein VITISV_034106 [Viti	0.859	0.456	0.457	6e-31
224057230	355	predicted protein [Populus trichocarpa]	0.865	0.433	0.412	7e-31

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 115/154 (74%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           Q   LK+FPA+++++CY  FF+T+L+A+F+L VV + ++WK++ ++GL  I Y+AVIG A
Sbjct: 202 QTFILKKFPAVLIIICYLCFFNTVLSAIFALIVVEDRNSWKIKPNIGLATILYTAVIGLA 261

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
           F  +L+ WCL R GPLYV++FKPLAI+F+ +M  II GD L LGSL+GA+IIV GFY VM
Sbjct: 262 FRISLVAWCLSRTGPLYVTLFKPLAIIFAVIMDAIILGDPLCLGSLIGAIIIVTGFYWVM 321

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 171
           WGKAKEE   DD    S E SS+ VPLL +  E+
Sbjct: 322 WGKAKEEKAGDDSAVGSCESSSDNVPLLGDLAEE 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 102/153 (66%), Gaps = 7/153 (4%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           QA  LK+ PA++ +  +  FF +I++   SL    + SAW+L+LDVGL A+ YSA++G  
Sbjct: 198 QATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSAWRLKLDVGLLAVLYSAIVGNV 257

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
              ++  WC+ RAGPL+ SMFKPL I+F+ VMGVI  GD L LGSLVGA+IIV GFY VM
Sbjct: 258 IRISMCTWCVRRAGPLFCSMFKPLGIVFAFVMGVIFSGDALHLGSLVGAIIIVTGFYAVM 317

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQNSTE 170
           WGKAKE     + G       S KVPLLQN T+
Sbjct: 318 WGKAKEA----EEGRLE---CSRKVPLLQNQTD 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 102/153 (66%), Gaps = 1/153 (0%)

Query: 17  FQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGA 76
           +QA    ++PA+  ++ +Q  FSTI   +F+L VV   + W+L+LD+GL  I Y A+   
Sbjct: 200 YQASVAYKYPAVTTIVFFQLLFSTIQCGVFALIVVQXSNEWELKLDIGLIGIVYQAIAAT 259

Query: 77  AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136
                L  WC+++AGPL+ SMFKP+AI+FS  MG I  GD L LGSL+GAVIIVIGFY V
Sbjct: 260 LIRYILCTWCVLKAGPLFCSMFKPVAIIFSVFMGAIFLGDDLSLGSLIGAVIIVIGFYAV 319

Query: 137 MWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 169
           +WGK+ E+N I ++G  + E S   VPLLQN T
Sbjct: 320 LWGKSIEDNKI-EKGVENLESSCHNVPLLQNRT 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 101/153 (66%), Gaps = 1/153 (0%)

Query: 17  FQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGA 76
           +QA    +FPA+ V++ +Q  FSTI  A+F+L  V + + W+L+ D+GL  I Y A+   
Sbjct: 200 YQASVAHKFPAVTVIVFFQLLFSTIQCAVFALIAVPDPTEWELKFDIGLIGILYQAIAAT 259

Query: 77  AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136
                L  WC+++AGPL+ SMFKP++I+F+  M  I  GD L LGSL+GAVIIVIGFY V
Sbjct: 260 LIRYILCTWCVLKAGPLFCSMFKPVSIIFTVFMAAIFLGDDLSLGSLIGAVIIVIGFYAV 319

Query: 137 MWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 169
           +WGK+ EEN I  +G  + E S   VPLLQN T
Sbjct: 320 LWGKSIEENKI-VKGVENLESSCHNVPLLQNRT 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 103/155 (66%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           QA+ LK++PA ++++ +  F  TIL+ +  L +  +  AW L+  V   A+ YS V G+A
Sbjct: 201 QALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAWSLKPTVRWIAVVYSGVFGSA 260

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
           F   +  WCL + GP++V+MFKPL I+ +  + +I   D L+LGSLVGA +IVIGFY VM
Sbjct: 261 FQVGVSTWCLHKTGPVFVAMFKPLGIVIAAAVSIICLRDTLYLGSLVGATVIVIGFYSVM 320

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDT 172
           WGKAKEE    D G  S E SS+KVPLLQ+ TE+T
Sbjct: 321 WGKAKEEKVGVDDGVRSFESSSQKVPLLQSHTEET 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 99/153 (64%), Gaps = 5/153 (3%)

Query: 17  FQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGA 76
           +QA   K++PA+ V++ +Q+ FSTI   +F+L  V + + W+L+ D GL  I Y A++  
Sbjct: 200 YQASVAKKYPAVTVIVFFQFLFSTIQCGVFALIAVRDPTEWELKFDRGLSVILYQAIVAT 259

Query: 77  AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136
               TL  WC+ RAGPL+ +MFKP+ I+F+  M  I  G+   LGSL+GAVIIVIGFY V
Sbjct: 260 MLRYTLTTWCVHRAGPLFCAMFKPVGIIFTVSMSAIFLGENFGLGSLIGAVIIVIGFYAV 319

Query: 137 MWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 169
           +WG ++EEN I++      E SS   PLLQ+ +
Sbjct: 320 LWGNSREENKIENL-----ESSSHNAPLLQDRS 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 95/153 (62%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           QA  LK++PA +++  Y  FF  I +A  SL +     AW L+      A+ YS V G  
Sbjct: 196 QASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKPSTRFIAVMYSGVFGYV 255

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
           F    + WC+ + GP++V+MFKP+ I+ +  MGVI  GD  ++GSL+GA +IVIGFY VM
Sbjct: 256 FQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYMGSLIGATVIVIGFYSVM 315

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQNSTE 170
           WGKAKEE   +D G  S E +S+K PLLQN  E
Sbjct: 316 WGKAKEEKIDEDIGMRSLESTSQKAPLLQNYIE 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790133|emb|CAN67884.1| hypothetical protein VITISV_015327 [Vitis vinifera]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 99/159 (62%)

Query: 13  ILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSA 72
           +L  FQ   ++++PA +++    + F+T+ +++ SL    + SAW+LRLD+ L A+ YS 
Sbjct: 177 VLLVFQTSIIRDYPAELIVTLISHIFATMQSSLVSLIAERDPSAWRLRLDMELIAVGYSG 236

Query: 73  VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIG 132
           +   A    +  W L + GP++V+MFKP  I+ + +MGV   GD L LGS++GA II +G
Sbjct: 237 IFVVALRGAVYAWVLHQKGPVFVAMFKPAGIVIAVIMGVTFLGDKLHLGSVIGAAIIALG 296

Query: 133 FYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 171
           FY V+WGKAKEE   +D        SS +VPLLQN + +
Sbjct: 297 FYTVVWGKAKEEKMAEDIAACGVNTSSHRVPLLQNKSTE 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778659|emb|CAN71719.1| hypothetical protein VITISV_034106 [Vitis vinifera]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 95/153 (62%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           QA  LK++PA +++  Y  FF  I +A  SL +     AW L+      A+ YS V G  
Sbjct: 175 QASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKPSTRFIAVMYSGVFGYV 234

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
           F    + WC+ + GP++V+MFKP+ I+ +  MGVI  GD  ++GSL+GA +IVIGFY VM
Sbjct: 235 FQVGAITWCVHQKGPVFVAMFKPVGIVVAIAMGVIFLGDTFYMGSLIGATVIVIGFYSVM 294

Query: 138 WGKAKEENTIDDRGTWSSELSSEKVPLLQNSTE 170
           WGKAKEE   +D G  S E +S+K PLLQN  E
Sbjct: 295 WGKAKEEKIDEDIGVRSLESTSQKAPLLQNYIE 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 104/155 (67%), Gaps = 1/155 (0%)

Query: 18  QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
           QA+ LK++ A ++++ + +FFSTIL+++ S+ +  + SAW L  ++ L A+ +S ++G A
Sbjct: 199 QALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSLNSNIRLIAVLFSGILGNA 258

Query: 78  FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
           F   +  WC+ + GP++V++F PL I+ +    VI FGD L LG ++GA +I IGFY V+
Sbjct: 259 FEIGVTAWCVHKTGPVFVAIFAPLGIVIAAAASVICFGDALDLGIVIGAAVIAIGFYAVI 318

Query: 138 WGKAKEE-NTIDDRGTWSSELSSEKVPLLQNSTED 171
           WGKA+EE   ++D+    S  SS+KVP LQN + D
Sbjct: 319 WGKAQEEIKKVEDKENCGSASSSQKVPFLQNRSND 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.803	0.389	0.388	3.6e-25
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.865	0.430	0.365	5.5e-22
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.842	0.422	0.345	7e-22
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.741	0.339	0.362	9e-22
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.865	0.427	0.349	1.1e-21
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.820	0.430	0.353	1.1e-21
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.707	0.328	0.373	1.8e-21
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.893	0.429	0.348	2.4e-21
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.842	0.424	0.362	6.3e-21
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.825	0.394	0.312	9.7e-21

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 56/144 (38%), Positives = 87/144 (60%)

Query:    18 QAITLKEFPALIVMLCYQYFFSTILAAMFSL-TVVTELSAWKLRLDVGLFAIAYSAVIGA 76
             Q   ++E+PA   ++C+     +   A+ +L T   +L AWK++ ++ L +I  S + G+
Sbjct:   200 QTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIALVSIVCSGLFGS 259

Query:    77 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136
                 T+  W L   GPL+V+MFKPL+I  +  MGVI   D L++GSL+GA +I IGFY V
Sbjct:   260 CINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIGSLIGATVITIGFYTV 319

Query:   137 MWGKAKEENTIDDRGTWSSELSSE 160
             MWGKAKE   ++D    + E ++E
Sbjct:   320 MWGKAKEVALVEDDNKANHEEANE 343

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 60/164 (36%), Positives = 88/164 (53%)

Query:    11 FIILEFF-QAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV-TELSAWKLRLDVGLFA 67
             F+ + F  Q   ++E+P A  V + Y    S I+ +M  L V     S W +  D+ LF 
Sbjct:   200 FVSVSFILQTHIMREYPEAFTVSILYILCIS-IVTSMIGLVVEKNNPSIWIIHFDITLFT 258

Query:    68 IAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV 127
             I  + +I + +   +  W +    PLY+++FKPL+IL + VMG I   D L+LG L+G +
Sbjct:   259 IVTTGIITSVYYV-IHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFLNDSLYLGCLIGGI 317

Query:   128 IIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 171
             +I +GFYVVMWGKA EE     +    S    EK PLL +   D
Sbjct:   318 LITLGFYVVMWGKANEE-----KNKLLSFSGKEKTPLLLSGKND 356

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 57/165 (34%), Positives = 90/165 (54%)

Query:     9 MAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVV-TELSAWKLRLDVGLFA 67
             +AFI+    QA  +K +PA   +  + +  ++IL ++  +       S W +  D+ L  
Sbjct:   202 VAFIL----QAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWIIHFDITLVC 257

Query:    68 IAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV 127
             I    +    +   + LW +   GP+Y+++F+PL+IL + +MG I  GD  +LGSLVG +
Sbjct:   258 IVVGGIFNPGYYA-IHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSFYLGSLVGGI 316

Query:   128 IIVIGFYVVMWGKAKEENTIDDRGTWSSELS-SEKVPLLQNSTED 171
             +I +GFY VMWGKAKE  T          LS SE+ PLL  + +D
Sbjct:   317 LISLGFYTVMWGKAKEGKT--------QFLSLSEETPLLDENIDD 353

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 50/138 (36%), Positives = 81/138 (58%)

Query:    16 FF--QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAV 73
             FF  Q+ TLK++PA + +        T+     SL  V +LSAWK+  D  LFA AYS V
Sbjct:   208 FFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLSAWKIGFDSNLFAAAYSGV 267

Query:    74 I--GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI 131
             I  G A+    ++  +   GP++V+ F PL ++ +  +GV++  + + LGS++G + I++
Sbjct:   268 ICSGVAYYVQGVV--MRERGPVFVATFNPLCVVITAALGVVVLSESIHLGSVIGTLFIIV 325

Query:   132 GFYVVMWGKAKEENTIDD 149
             G Y V+WGK K++   DD
Sbjct:   326 GLYTVVWGKGKDKRMTDD 343

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 57/163 (34%), Positives = 87/163 (53%)

Query:    11 FIILEFF-QAITLKEFPALI-VMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAI 68
             F+ + F  QA  +  +PA   V   Y    S + + +  +      S W +  D+ L  I
Sbjct:   203 FVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWIIHFDITLITI 262

Query:    69 AYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI 128
                A++ + +   +  W +   GPLY+++FKPL+IL + VMG I   D L+LG L+G ++
Sbjct:   263 VTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGIL 321

Query:   129 IVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 171
             I +GFY VMWGKA EE    D+ ++S +   EK PLL N   D
Sbjct:   322 ITLGFYAVMWGKANEEK---DQLSFSEK---EKTPLLLNRKND 358

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 53/150 (35%), Positives = 85/150 (56%)

Query:    19 AITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
             A T+  +P A++V L +    + + A +  L       AW +R D+ L  +  + ++ + 
Sbjct:   190 AHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVVATGILNSG 249

Query:    78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
             +   +  W +   GP+Y+SMFKPL+IL + V   I  G+ L+LGS++G ++I IGFY+V+
Sbjct:   250 YYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVMGGILISIGFYMVL 308

Query:   138 WGKAKEENTIDDRGTWSSELSSEKVPLLQN 167
             WGKAKE+  +D  G   S   S   PLL N
Sbjct:   309 WGKAKEDK-VDIIGAIESS-PSHNAPLLDN 336

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 47/126 (37%), Positives = 77/126 (61%)

Query:    18 QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77
             QA  LK++PA + +  +  FF  I   + +L V T+L+ W +     LF I Y+ +I + 
Sbjct:   225 QAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASG 284

Query:    78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137
              +  L  WC+ ++GP++V++F+PL  L    M  +I GD L+ G +VGAV I++G Y+V+
Sbjct:   285 LVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVL 344

Query:   138 WGKAKE 143
             WGK +E
Sbjct:   345 WGKNEE 350

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 61/175 (34%), Positives = 101/175 (57%)

Query:    10 AFIILEFFQAITLKEFPA---LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLF 66
             AF IL   Q+ TLK +PA   L+ ++C      TIL A+ SL +V + SAWK+ +D G  
Sbjct:   198 AFFIL---QSYTLKVYPAELSLVTLICG---IGTILNAIASLIMVRDPSAWKIGMDSGTL 251

Query:    67 AIAYSAVI--GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 124
             A  YS V+  G A+    ++  + + GP++ + F P+ ++ +  +G ++  + + LGS++
Sbjct:   252 AAVYSGVVCSGIAYYIQSIV--IKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSII 309

Query:   125 GAVIIVIGFYVVMWGKAKEE-NTIDDR-GTWSSELSSEKVPLLQNSTEDTKCCPS 177
             GAV IV+G Y V+WGK+K+E N +D++    S EL    V + Q +  D    P+
Sbjct:   310 GAVFIVLGLYSVVWGKSKDEVNPLDEKIVAKSQELPITNV-VKQTNGHDVSGAPT 363

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 58/160 (36%), Positives = 87/160 (54%)

Query:    11 FIILEFF-QAITLKEFPALIVMLCYQYFFS-TILAAMFSLTVV-TELSAWKLRLDVGLFA 67
             F+ + F  QA  +  +PA   +  + Y  S +I+ +M  L V     S W +R D+ L  
Sbjct:   200 FVSVSFILQAKIMSTYPAAFTV-SFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITLIT 258

Query:    68 IAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV 127
             I   A+I + +   +  W +   GPLY+++FKPL+IL + VM  +   D L+LG L+G +
Sbjct:   259 IVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLNDSLYLGCLIGGL 317

Query:   128 IIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 167
             +I +GFY VMWGKA EE    D+    S    E+ PLL N
Sbjct:   318 LITLGFYAVMWGKANEEK---DQLLLVS--GKERTPLLLN 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 50/160 (31%), Positives = 97/160 (60%)

Query:    16 FF--QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAV 73
             FF  Q+ TLK++PA + ++ +     T+L  + SL +V ++SAWK+ +D G  A  YS V
Sbjct:   202 FFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVRDVSAWKVGMDSGTLAAVYSGV 261

Query:    74 I--GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI 131
             +  G A+    ++  +   GP++ + F P+ ++ +  +GV++  + + LGS++GA+ IV 
Sbjct:   262 VCSGMAYYIQSIV--IRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVF 319

Query:   132 GFYVVMWGKAKEEN-TIDDRGTWSSELSSEKVPLLQNSTE 170
             G Y V+WGKAK+E  +++++      +  +++P+   ST+
Sbjct:   320 GLYSVVWGKAKDEVISVEEK------IGMQELPITNTSTK 353

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	6e-22

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 90.4 bits (224), Expect = 6e-22
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 11  FIILEF-FQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV-VTELSAWKLRLDVGLFAI 68
           F+ + F  QA  + E+PA   +        +I+ +M  L V     S W +  D+ L  I
Sbjct: 200 FVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITI 259

Query: 69  AYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI 128
              A+I + +   +  W +   GPLY+++FKPL+IL + VMG I   D L+LG L+G ++
Sbjct: 260 VTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGIL 318

Query: 129 IVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 171
           I +GFY VMWGKA EE    D+    S    EK PLL N   D
Sbjct: 319 ITLGFYAVMWGKANEEK---DQLLSFSG--KEKTPLLLNGKND 356

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PLN00411	358	nodulin MtN21 family protein; Provisional	99.95
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.84
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.84
PRK11272	292	putative DMT superfamily transporter inner membran	99.79
PRK11689	295	aromatic amino acid exporter; Provisional	99.78
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.73
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.71
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.69
PRK15430	296	putative chloramphenical resistance permease RarD;	99.64
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.63
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.51
COG2510	140	Predicted membrane protein [Function unknown]	99.51
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.48
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.46
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.28
PRK15430	296	putative chloramphenical resistance permease RarD;	99.25
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.24
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.24
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.16
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.14
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.07
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.07
PLN00411	358	nodulin MtN21 family protein; Provisional	99.05
PRK11272	292	putative DMT superfamily transporter inner membran	99.0
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.96
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.93
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.92
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.89
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.87
PRK11689	295	aromatic amino acid exporter; Provisional	98.79
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.76
COG2962	293	RarD Predicted permeases [General function predict	98.51
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.49
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.41
KOG2765	416	consensus Predicted membrane protein [Function unk	98.33
COG2962	293	RarD Predicted permeases [General function predict	98.27
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.18
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.16
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.13
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.11
KOG1580	337	consensus UDP-galactose transporter related protei	98.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.93
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.92
COG2076	106	EmrE Membrane transporters of cations and cationic	97.89
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.86
PRK11431	105	multidrug efflux system protein; Provisional	97.76
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.59
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.58
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.47
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.39
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.16
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.14
KOG2766	336	consensus Predicted membrane protein [Function unk	96.92
PRK13499	345	rhamnose-proton symporter; Provisional	96.9
KOG1582	367	consensus UDP-galactose transporter related protei	96.84
KOG1443	349	consensus Predicted integral membrane protein [Fun	96.72
KOG1581	327	consensus UDP-galactose transporter related protei	96.6
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.6
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.55
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.43
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.35
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.32
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	96.25
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	96.02
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.46
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	95.09
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.7
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.56
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	94.44
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	93.77
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	93.76
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.74
KOG2922	335	consensus Uncharacterized conserved protein [Funct	93.51
KOG2765	416	consensus Predicted membrane protein [Function unk	93.41
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	92.44
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	91.91
KOG1580	337	consensus UDP-galactose transporter related protei	91.08
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	90.62
PRK13108	460	prolipoprotein diacylglyceryl transferase; Reviewe	89.54
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	88.65
PF04306	140	DUF456: Protein of unknown function (DUF456); Inte	87.32
COG3086	150	RseC Positive regulator of sigma E activity [Signa	86.52
PRK02237	109	hypothetical protein; Provisional	86.35
KOG3912	372	consensus Predicted integral membrane protein [Gen	86.08
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	83.85
KOG3912	372	consensus Predicted integral membrane protein [Gen	81.37

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.95  E-value=7.4e-27  Score=200.92  Aligned_cols=161  Identities=35%  Similarity=0.633  Sum_probs=132.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccc-cccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~-~~~~~~~~~~~~~~llylgi~~T~la~~l~~   84 (178)
                      .++++||+|++++|+..+++|+....++|++.++++...+.+...++. ...|....+.....++|.+++ +.++|.+|+
T Consensus       196 ~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~  274 (358)
T PLN00411        196 IQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHS  274 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHH
Confidence            367899999999999999997666888999999998888877766532 223322222335678999976 678999999


Q ss_pred             HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCCcccccC
Q 030367           85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPL  164 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (178)
                      |++++.||++++++.+++|++++++|+++|||++++.+++|+++|+.|++++.++++||.+++++++.     ++|+.|+
T Consensus       275 ~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~-----~~~~~~~  349 (358)
T PLN00411        275 WTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFS-----GKEKTPL  349 (358)
T ss_pred             HHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcc-----ccccchh
Confidence            99999999999999999999999999999999999999999999999999999888777555444432     4566888


Q ss_pred             CCCCCccc
Q 030367          165 LQNSTEDT  172 (178)
Q Consensus       165 ~~~~~~~~  172 (178)
                      +.|+.|||
T Consensus       350 ~~~~~~~~  357 (358)
T PLN00411        350 LLNGKNDQ  357 (358)
T ss_pred             hhhccccc
Confidence            89998865

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.84  E-value=6.3e-20  Score=153.48  Aligned_cols=135  Identities=13%  Similarity=0.076  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      .++++||+|.++.|+..++++ +... .++.+++++.+.++....++. ..+.   ...|..++|+|+++|+++|.+|++
T Consensus       155 ~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~l~lgv~~t~~~~~l~~~  228 (293)
T PRK10532        155 GAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-ALWH---WSILPLGLAVAILSTALPYSLEMI  228 (293)
T ss_pred             HHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-ccCC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999987775 5555 567777887777776643321 1111   124566789999999999999999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT  146 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~  146 (178)
                      +++|.+|+++|++.++||++++++|++++||++++.+++|+++|+.|++...++++|+.|-
T Consensus       229 ~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~  289 (293)
T PRK10532        229 ALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKI  289 (293)
T ss_pred             HHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999998777665543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.84  E-value=7.6e-20  Score=153.28  Aligned_cols=137  Identities=13%  Similarity=0.151  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHhcccc---ccchhcchhHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPA--LIVMLCYQYFFSTILAAMFSLTVVTEL---SAWKLRLDVGLFAIAYSAVIGAAFLT   80 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~--~l~~t~~~~l~g~i~~~~~a~~~~~~~---~~~~~~~~~~~~~llylgi~~T~la~   80 (178)
                      +++++|++|.+++||..++.++  ......+++..+.+.....+...+++.   ..+.......|..++|+|+++|+++|
T Consensus       150 ~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~  229 (299)
T PRK11453        150 AAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGY  229 (299)
T ss_pred             HHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999998766542  345667777777776665555444321   01111112468899999999999999


Q ss_pred             HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367           81 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  142 (178)
Q Consensus        81 ~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~  142 (178)
                      .+|++++++.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..++++.
T Consensus       230 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~  291 (299)
T PRK11453        230 GIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRW  291 (299)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhh
Confidence            99999999999999999999999999999999999999999999999999999999887763

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.79  E-value=2.2e-18  Score=143.99  Aligned_cols=133  Identities=16%  Similarity=0.183  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      +++++||+|.+..||..++.  +...+.+++.++++.+.++....+.+...  ......|..++|+++++|+++|.+|++
T Consensus       157 ~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~  232 (292)
T PRK11272        157 IASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMY  232 (292)
T ss_pred             HHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999875433  45678899999999888876654322111  112246889999999999999999999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  142 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~  142 (178)
                      ++|+.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++.++++++
T Consensus       233 ~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        233 LLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999998876553

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.78  E-value=2.3e-18  Score=144.21  Aligned_cols=130  Identities=5%  Similarity=0.057  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      .++++||+|+++.||..++++ +....   +..+++.+.+.....+.....+  . ...|..++|.+ ++|+++|.+|++
T Consensus       163 ~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~~~--~-~~~~~~l~~~~-~~t~~~~~l~~~  234 (295)
T PRK11689        163 IGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALWIKYFLSPQPAMVF--S-LPAIIKLLLAA-AAMGFGYAAWNV  234 (295)
T ss_pred             HHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHHHHHHHhcCccccC--C-HHHHHHHHHHH-HHHHHHHHHHHH
Confidence            588999999999999877764 55432   2334444444333322111111  1 23577788888 589999999999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  143 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~  143 (178)
                      ++|+.+|++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..++.|++
T Consensus       235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~  292 (295)
T PRK11689        235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK  292 (295)
T ss_pred             HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence            9999999999999999999999999999999999999999999999999987665433

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.73  E-value=2.4e-17  Score=138.08  Aligned_cols=140  Identities=15%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHHHHHh--hcChHHHHHHHHHHHHHHHHHHHHHHhccccc---cchhc-chhHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLK--EFPALIVMLCYQYFFSTILAAMFSLTVVTELS---AWKLR-LDVGLFAIAYSAVIGAAFL   79 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~--~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~---~~~~~-~~~~~~~llylgi~~T~la   79 (178)
                      +++++|++|.++.||..+  ++ ++..++.+++..+++.++|++...++...   .+... .......+.+.+++++..+
T Consensus       152 ~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (302)
T TIGR00817       152 ISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGF  230 (302)
T ss_pred             HHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Confidence            488999999999999887  66 47999999999999999999876653211   11000 0001111222233333334


Q ss_pred             H----HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367           80 T----TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT  146 (178)
Q Consensus        80 ~----~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~  146 (178)
                      +    .++++++++.||++++++.+++|++++++|++++||++++.+++|+++++.|+++.++.|++|+|.
T Consensus       231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            4    455589999999999999999999999999999999999999999999999999999877666553

specificities overlap.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.71  E-value=6.2e-17  Score=116.93  Aligned_cols=125  Identities=17%  Similarity=0.366  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030367            9 MAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM   88 (178)
Q Consensus         9 l~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~   88 (178)
                      ++||.+.++.|+..++.+ +...+.+++..+++ ++++....+...  ........+..+++.+++++++++.+|+++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            479999999999999985 89999999999998 666666554322  11112245778899999999999999999999


Q ss_pred             hcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           89 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        89 ~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      +.++++++.+.+++|+++.+++++++||++++.+++|.++++.|++++.
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.69  E-value=6.3e-16  Score=125.90  Aligned_cols=124  Identities=19%  Similarity=0.259  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~   84 (178)
                      .++++|++|.++.|+..++++ ++...+.+++.++++.+.+.....++.. .+   ....|..++|.++++++++|.+|+
T Consensus       135 ~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~  210 (260)
T TIGR00950       135 GSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWN  210 (260)
T ss_pred             HHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999887764 2456666889999988888876543221 11   124577899999999999999999


Q ss_pred             HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 030367           85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGF  133 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv  133 (178)
                      +++|+.++++++.+.+++|+++++++++++||++++.+++|.++++.|+
T Consensus       211 ~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       211 KGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999986

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.64  E-value=3.3e-15  Score=125.16  Aligned_cols=131  Identities=10%  Similarity=0.070  Sum_probs=95.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEF-PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~-~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~   84 (178)
                      +++++||+|.++.|+..++. .+....+.|++.++.....+..   ......+.. .+..+..+++.+.+.|.++|.+|+
T Consensus       156 ~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~g~~t~i~~~~~~  231 (296)
T PRK15430        156 GLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQ-NPMSLNLLLIAAGIVTTVPLLCFT  231 (296)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999988864322 1234556667666655533221   111111111 112233444444447889999999


Q ss_pred             HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      +++|+.+|+++|++.+++|++++++|++++||++++.+++|+++|+.|+.+.....
T Consensus       232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988887766543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.63  E-value=3.2e-15  Score=124.17  Aligned_cols=127  Identities=18%  Similarity=0.229  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPA---LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTL   82 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~---~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l   82 (178)
                      +++++|++|.++.|+..++.++   ....+.+++..+++...+.....+...  +. .....++.++|.+.++++++|.+
T Consensus       151 ~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~l~~~l  227 (281)
T TIGR03340       151 AAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQILPSATLGGLMIGGAYAL  227 (281)
T ss_pred             HHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999988876444431   122344555444333333222212111  11 11234667899999999999999


Q ss_pred             HHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367           83 LLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV  135 (178)
Q Consensus        83 ~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l  135 (178)
                      |++++++.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++
T Consensus       228 ~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       228 VLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.51  E-value=2.3e-13  Score=116.90  Aligned_cols=133  Identities=13%  Similarity=0.150  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhcC------hHHHHHHHHHHHHHHHHHHHHHHhcccc--ccchh---c-chhHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFP------ALIVMLCYQYFFSTILAAMFSLTVVTEL--SAWKL---R-LDVGLFAIAYSAV   73 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~------~~l~~t~~~~l~g~i~~~~~a~~~~~~~--~~~~~---~-~~~~~~~llylgi   73 (178)
                      +++++||+|.++.|+..++++      ++..+..+++.+|++.++|+....|...  ..+..   . ....+..++| .+
T Consensus       201 ~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i  279 (350)
T PTZ00343        201 LSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KI  279 (350)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HH
Confidence            578999999999999887542      2455666778899999999887665321  11100   0 0112345667 56


Q ss_pred             HHHHHHHHHHHH----HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           74 IGAAFLTTLLLW----CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        74 ~~T~la~~l~~~----~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      +.++++|.+|+.    ++++++|.+.++..++.|++++++|++++||++++.+++|.++++.|+++.++-
T Consensus       280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            778999999995    999999999999999999999999999999999999999999999999987754

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.51  E-value=3.1e-13  Score=99.82  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      ++|+.|++-.++.|.-.++. ||..-|.....+..+.+..+.+..+.....-.. .+..|.-++..| ++++++..+|++
T Consensus        10 LsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSG-la~glswl~Yf~   86 (140)
T COG2510          10 LSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSG-LAGGLSWLLYFR   86 (140)
T ss_pred             HHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHH-HHHHHHHHHHHH
Confidence            68999999999999888887 467777777777777776666544321110001 234577777778 699999999999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  138 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~  138 (178)
                      ++|+-.++++..+.-+.|++++++++++|||+++..+++|.++|.+|.+++.+
T Consensus        87 ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          87 ALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            99999999999999999999999999999999999999999999999887653

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.48  E-value=4e-13  Score=109.54  Aligned_cols=135  Identities=10%  Similarity=0.025  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      .++.||++|++..+|.-+..+ .-.-+...|.++++..+|+.....+ +.-+   .+.....-+-.|+++|++.|.+-..
T Consensus       155 ~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-~~l~---~p~ll~laLgvavlSSalPYsLEmi  229 (292)
T COG5006         155 GAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-PALF---SPSLLPLALGVAVLSSALPYSLEMI  229 (292)
T ss_pred             HHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-hhhc---ChHHHHHHHHHHHHhcccchHHHHH
Confidence            578999999999999865544 3566778899999999999874321 1111   1122344566799999999999999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccccc
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN  145 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~  145 (178)
                      +++|+++..-+..+.+||.++++.|+++|||++|+.|++|.++|+.+..=+.+..+|+.+
T Consensus       230 AL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~~  289 (292)
T COG5006         230 ALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPAV  289 (292)
T ss_pred             HHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence            999999999999999999999999999999999999999999999998766666555544

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.46  E-value=2.5e-12  Score=104.92  Aligned_cols=127  Identities=17%  Similarity=0.302  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHH-HHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLC-YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~-~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~   84 (178)
                      +++++|++|.+..|+.. +.+ +..... +++........+... .+.+   .. .....+..+.+.|+++++++|.+|+
T Consensus       161 ~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~~g~~~~~i~~~~~~  233 (292)
T COG0697         161 AAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLLFFL-SGFG---AP-ILSRAWLLLLYLGVFSTGLAYLLWY  233 (292)
T ss_pred             HHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHh-cccc---cc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999887 553 455555 555522222222211 1111   11 1123578899999999999999999


Q ss_pred             HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      +++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+.+...+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999998866

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.28  E-value=2e-11  Score=91.25  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367           67 AIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI--IFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  142 (178)
Q Consensus        67 ~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l--~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~  142 (178)
                      ..+|+|+++.+++|.+|++++++.+.+.+..+..+.+++..+.++.  ++||++++.+++|.++|++|+++++++++|
T Consensus        49 ~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         49 RAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            3688999999999999999999999999999999999999888885  899999999999999999999998865543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.25  E-value=2.3e-10  Score=95.91  Aligned_cols=129  Identities=13%  Similarity=0.134  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcc-hhHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL-DVGLFAIAYSAVIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~-~~~~~~llylgi~~T~la~~l~~   84 (178)
                      +++++|+...++.|.. .+++ |..+..++++++.+.++++..... +........ ..........+.++.++.+.+++
T Consensus        15 ~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (296)
T PRK15430         15 AAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFI   91 (296)
T ss_pred             HHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999998764 6675 899999999999887766654332 111100000 01122333467778888999999


Q ss_pred             HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      +++++.+++.+++..+..|++.++++++++||+++.++++|.++.+.|+.+..
T Consensus        92 ~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         92 WAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998765

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.24  E-value=3e-10  Score=97.14  Aligned_cols=135  Identities=11%  Similarity=0.187  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhcccc-ccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTEL-SAWKLRLDVGLFAIAYSAVIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~-~~~~~~~~~~~~~llylgi~~T~la~~l~~   84 (178)
                      ++++.||+|++++++..|+.+ ...+.++.-++|.+...+....+|... ...+  ++......+-...++..+-|.+..
T Consensus       175 ~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p  251 (334)
T PF06027_consen  175 LGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVP  251 (334)
T ss_pred             HHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999986 678888888888888887777666432 1111  111222222223445667788889


Q ss_pred             HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367           85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  143 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~  143 (178)
                      ..+++.+|+...+-+....+++++++++++|+++++..++|.++|+.|+++....++++
T Consensus       252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             HHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            99999999999999999999999999999999999999999999999999988665443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.24  E-value=2.9e-10  Score=94.43  Aligned_cols=129  Identities=12%  Similarity=0.160  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      +++++||.+.+..||..++.+ +  .+.+....+++.+.++....... ..|+.. +..+...+..+.+.....+.++++
T Consensus         8 ~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   82 (281)
T TIGR03340         8 FSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRL-PATFWLLLAISAVANMVYFLGLAQ   82 (281)
T ss_pred             HHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhccc-CCCCCc-chhhHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999998776643 3  34555566666666665542111 123221 123444444566677889999999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      ++++.+++.++++.+..|+++++++++++||+++.++++|.++++.|+++...+
T Consensus        83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999987653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.16  E-value=3e-10  Score=95.22  Aligned_cols=123  Identities=14%  Similarity=0.230  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHH---HHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVM---LCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTL   82 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~---t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l   82 (178)
                      +++++|+.|.+..|..  +++ |...   ..+.++++++...+..  ...+  .+.  ....+..++ .|++ +.++|.+
T Consensus       159 ~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~~~~~~-~Gi~-~~ia~~~  227 (290)
T TIGR00776       159 MSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAILLNIL-PGLM-WGIGNFF  227 (290)
T ss_pred             HHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHHHHHHH-HHHH-HHHHHHH
Confidence            5789999999998875  364 6777   4444455555444332  1111  121  122355555 8888 8999999


Q ss_pred             HHHHHh-hcCcceeeechhhHHHHHHHHHHHHhcCCcchHHH----HHHHHHHHHHHHHHhc
Q 030367           83 LLWCLM-RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVVMWG  139 (178)
Q Consensus        83 ~~~~l~-~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~i----iG~~lIl~Gv~l~~~~  139 (178)
                      |..+.+ +.++++++.+..++|+.+++++++++||+.++.++    +|.++|+.|+.+....
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            999999 99999999999999999999999999999999999    9999999999987654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00688 rarD rarD protein

Probab=99.14  E-value=1.4e-09  Score=88.95  Aligned_cols=129  Identities=13%  Similarity=0.195  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhcccc---ccchh-cchhHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTEL---SAWKL-RLDVGLFAIAYSAVIGAAFLTT   81 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~---~~~~~-~~~~~~~~llylgi~~T~la~~   81 (178)
                      +++++|+...++.|. ..+.+ |..+..+.++++++.+.++.....+..   ..++. .....+..+...|++ ..+.+.
T Consensus         9 ~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~   85 (256)
T TIGR00688         9 LASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-IGFNWW   85 (256)
T ss_pred             HHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-HHHHHH
Confidence            578999999999887 45675 899999999999988766554332110   01110 011123345555655 668899


Q ss_pred             HHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           82 LLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        82 l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      ++++++++.+++.+++..+..|++++++++++++|+++.++++|.++.+.|+.++.
T Consensus        86 ~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        86 LFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.07  E-value=2.3e-09  Score=77.73  Aligned_cols=107  Identities=16%  Similarity=0.329  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHH
Q 030367           34 YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII  113 (178)
Q Consensus        34 ~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~  113 (178)
                      +.+.++.+.+.............++......+...+..|+++...++.+|++++++.+ ..++....+.|++++++|+++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555444221111111111123444555577777789999999999999 488899999999999999999


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367          114 FGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus       114 LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      ++|+++...++|.+++++|+.++.+.+.
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999987653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.07  E-value=3.5e-09  Score=86.15  Aligned_cols=119  Identities=13%  Similarity=0.048  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030367           11 FIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA   90 (178)
Q Consensus        11 ~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~   90 (178)
                      |+...+..|...++..++.....+.++.+.+.+.++....   .      ....+...+..|.++..+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---P------PLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---c------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4555666777665544578888899988888776654321   1      112344556668888889999999999999


Q ss_pred             CcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367           91 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  138 (178)
Q Consensus        91 ~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~  138 (178)
                      +++.++++..+.|+++.+++.+++||++++.+++|.++.+.|+.+...
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            999999999999999999999999999999999999999999988764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.05  E-value=4.3e-09  Score=90.95  Aligned_cols=132  Identities=12%  Similarity=0.168  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030367            7 KMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWC   86 (178)
Q Consensus         7 aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~   86 (178)
                      -.++|+.+.++.|...+.--++..+.++.+.+++++++++....+... .++......|..+..+|+++ .+.+.+++++
T Consensus        21 ~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~~~~~~~~g   98 (358)
T PLN00411         21 TETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SMYVITGYIG   98 (358)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            346888999999988866335889999999999999988877554211 01100112355566677777 4667789999


Q ss_pred             HhhcCcceeeechhhHHHHHHHHHHHH------hcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           87 LMRAGPLYVSMFKPLAILFSTVMGVII------FGDGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        87 l~~~~~~~~sl~~~l~Pv~a~i~g~l~------LgE~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      +++.+++.++++.+..|++++++++++      ++|+++..+++|.++-++|+.++...+
T Consensus        99 l~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~  158 (358)
T PLN00411         99 IEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH  158 (358)
T ss_pred             HhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999      699999999999999999999877543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.00  E-value=1.3e-08  Score=84.96  Aligned_cols=127  Identities=14%  Similarity=0.108  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      +..+.|+...+..|...+..+ |..++.+.+.++++.++++........   .  ....+...+..|++...+.+.++++
T Consensus        15 ~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~---~--~~~~~~~~~~~g~~~~~~~~~~~~~   88 (292)
T PRK11272         15 ALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHPL---P--TLRQWLNAALIGLLLLAVGNGMVTV   88 (292)
T ss_pred             HHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCCC---C--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999998777674 899999999999999887765432111   1  1124555566777777778888999


Q ss_pred             HH-hhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           86 CL-MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        86 ~l-~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      +. ++.+++.++++.++.|+++.+++++ +||+++.++++|.++.+.|+++....
T Consensus        89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         89 AEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            98 9999999999999999999999985 79999999999999999999987654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.96  E-value=2.7e-08  Score=74.85  Aligned_cols=131  Identities=14%  Similarity=0.201  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhc------ChHHHHHHHHHHHHHHHHHHHHHHhcccccc--ch-hc------chhHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEF------PALIVMLCYQYFFSTILAAMFSLTVVTELSA--WK-LR------LDVGLFAIAY   70 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~------~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~--~~-~~------~~~~~~~lly   70 (178)
                      .+.++.|++.++.|+..++.      -+++.+..+....+.+.+++.+++.|.....  .. ..      ....+..++.
T Consensus         7 ~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (153)
T PF03151_consen    7 ASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLIL   86 (153)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHH
Confidence            57889999999999987772      2588899999999999999998887653211  10 00      1122344444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           71 SAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        71 lgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      .|+++ .+-....++.+++.+|...++...+-.+...++|++++||++++.+++|.++.+.|+++.+
T Consensus        87 ~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   87 SGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            44433 3455667889999999999999999999999999999999999999999999999987643

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.96  E-value=1.9e-08  Score=84.20  Aligned_cols=120  Identities=12%  Similarity=0.094  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 030367           14 LEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPL   93 (178)
Q Consensus        14 y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~~~~   93 (178)
                      ++++.|...+.++.|+.++.+++.++++...+............+   ...|..++-.|++. .+.+.++++++++.+++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s   92 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKIS---SALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS   92 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence            445667777776668999999999988776554211111111111   23566677778875 67789999999999999


Q ss_pred             eeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           94 YVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        94 ~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      .++++....|++.+++++++++|+++..+++|.+++++|+.+..
T Consensus        93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999998653

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.93  E-value=2.7e-08  Score=83.35  Aligned_cols=122  Identities=14%  Similarity=0.195  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      +++++|+...+..|...++.+ |..++++.++++++.++++.  ..+. ..        +..++-.|++.....+.+++.
T Consensus        11 ~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~--~~~~-~~--------~~~~~~~g~~~~~~~~~~~~~   78 (299)
T PRK11453         11 LVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFV--ARPK-VP--------LNLLLGYGLTISFGQFAFLFC   78 (299)
T ss_pred             HHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHh--cCCC-Cc--------hHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999998888885 89999999999877655432  1111 01        112222344444555667778


Q ss_pred             HHhh-cCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           86 CLMR-AGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        86 ~l~~-~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      +.++ .+++.++++....|+++.++++++++|+++.++++|.++.+.|+.+...+
T Consensus        79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            8887 57789999999999999999999999999999999999999999887643

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.92  E-value=2.7e-08  Score=85.55  Aligned_cols=123  Identities=13%  Similarity=0.127  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 030367           13 ILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGP   92 (178)
Q Consensus        13 ~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~~~   92 (178)
                      .+.+..|..++..|-|+.++.+|++++.+...++........+... .....+..++-+|++.... +...+.++++.++
T Consensus        63 ~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~sv  140 (350)
T PTZ00343         63 LYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISMGLGAV  140 (350)
T ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccH
Confidence            4566677777777558999999999998876554322111111111 0123456677778877654 6667799999999


Q ss_pred             ceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           93 LYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        93 ~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      +.++++..++|++++++++++++|+++.++++|.++++.|+.+..
T Consensus       141 s~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        141 SFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            999999999999999999999999999999999999999999865

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.89  E-value=3.1e-08  Score=72.13  Aligned_cols=67  Identities=15%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367           72 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  138 (178)
Q Consensus        72 gi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~  138 (178)
                      ++++-++++.+|.+++|+.+.+.+.....+.|++++++|++++||++++.+++|.++|+.|+.++..
T Consensus        43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4477788999999999999999999999999999999999999999999999999999999987653

>TIGR00688 rarD rarD protein

Probab=98.87  E-value=2e-08  Score=82.15  Aligned_cols=100  Identities=5%  Similarity=-0.050  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHH---HhccccccchhcchhHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSL---TVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTL   82 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~---~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l   82 (178)
                      +++++||+|.+..|+..+ .+ ......     +.+...++..   ................|..+++.|++ |.++|.+
T Consensus       153 ~aa~~~a~~~i~~~~~~~-~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l  224 (256)
T TIGR00688       153 VLAFSFTAYGLIRKALKN-TD-LAGFCL-----ETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLA  224 (256)
T ss_pred             HHHHHHHHHHHHHhhcCC-CC-cchHHH-----HHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHH
Confidence            578999999999888643 32 222221     1122222221   11111110011111357788888876 8999999


Q ss_pred             HHHHHhhcCcceeeechhhHHHHHHHHHHHH
Q 030367           83 LLWCLMRAGPLYVSMFKPLAILFSTVMGVII  113 (178)
Q Consensus        83 ~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~  113 (178)
                      |++++|+.++++++++.+++|++++++|++.
T Consensus       225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999874

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.79  E-value=1.7e-07  Score=78.41  Aligned_cols=124  Identities=12%  Similarity=0.005  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      +++++|+...+..|...+.+| |..+.++.+.+++++++++..  . +  ..+..   .+..++. +.+.-.+.+.++++
T Consensus        11 ~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~--~-~--~~~~~---~~~~~~~-~~l~~~~~~~~~~~   80 (295)
T PRK11689         11 IAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG--F-P--RLRQF---PKRYLLA-GGLLFVSYEICLAL   80 (295)
T ss_pred             HHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc--c-c--ccccc---cHHHHHH-HhHHHHHHHHHHHH
Confidence            578899999999999888886 899999999999988776521  1 1  11100   1111222 22233333444555


Q ss_pred             HHh----hcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           86 CLM----RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        86 ~l~----~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      +++    ..++..++++.++.|++++++++++++|++++.+++|.++-+.|+++....
T Consensus        81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            554    567788899999999999999999999999999999999999999887643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.76  E-value=4.5e-07  Score=76.24  Aligned_cols=138  Identities=17%  Similarity=0.267  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHH--hccccccchh--cchhHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLT--VVTELSAWKL--RLDVGLFAIAYSAVIGAAFLT   80 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~--~~~~~~~~~~--~~~~~~~~llylgi~~T~la~   80 (178)
                      ++.++-++..++++|..++++ ++.....+.-+++.+..++....  .++....++.  ..+..+..++. -.++..++.
T Consensus       161 ~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~-~s~~~~~g~  239 (303)
T PF08449_consen  161 LSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLL-FSLTGALGQ  239 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHH-HHHHHHHHH
Confidence            356778899999999988875 46677788888888877776665  2211111111  11122333333 333556667


Q ss_pred             HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367           81 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE  144 (178)
Q Consensus        81 ~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~  144 (178)
                      ...++..++.||...++...+--+++++++++++|+++++.+++|.++++.|..+-...|+|++
T Consensus       240 ~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  240 FFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            7778899999999999999999999999999999999999999999999999999888776653

; GO: 0055085 transmembrane transport

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.51  E-value=2.9e-06  Score=70.86  Aligned_cols=132  Identities=11%  Similarity=0.102  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      .-|++|+.|..+-|+. + ++ +.+-....++.-....+......+....-........+.-++..|+ .|+++..++..
T Consensus       155 ~la~sf~~Ygl~RK~~-~-v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~  230 (293)
T COG2962         155 ALALSFGLYGLLRKKL-K-VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAA  230 (293)
T ss_pred             HHHHHHHHHHHHHHhc-C-Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHH
Confidence            3478999999964443 2 33 3444444444444444444343332221011011223555566666 78899999999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      +-|+++-+..+++.|++|..-.++|++++||+++..+.+..++|-.|+.+..+..-
T Consensus       231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999886543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.49  E-value=4.6e-06  Score=67.83  Aligned_cols=134  Identities=14%  Similarity=0.246  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      ++++.|+......|...+.............+.+.+...+... .+.. ...+..  ..+...+..+.+.....+.+|+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   89 (292)
T COG0697          14 LWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LEPR-GLRPAL--RPWLLLLLLALLGLALPFLLLFL   89 (292)
T ss_pred             HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhcc-cccccc--cchHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777777766654222444555566666655332222 1110 011111  11344556688888899999999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGV-IIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  143 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~-l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~  143 (178)
                      ++++.++..+....+..|++..++++ ++++|++++.++.|..+.+.|++++.++....
T Consensus        90 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          90 ALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            99999999999999999999999997 77799999999999999999999988765543

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.41  E-value=1.6e-06  Score=63.97  Aligned_cols=70  Identities=19%  Similarity=0.374  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           72 AVIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        72 gi~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      .+++-+++|.++.+++|+++.+.+ +++.-+--+..++.|++++||++++.+++|.++|+.|++..+...+
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            455667899999999999988865 3445678888999999999999999999999999999999876554

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.33  E-value=4.5e-06  Score=71.90  Aligned_cols=136  Identities=14%  Similarity=0.200  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHH---HHHHHHHHHHHHHHHHHHHhcc-ccccchhcchhHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIV---MLCYQYFFSTILAAMFSLTVVT-ELSAWKLRLDVGLFAIAYSAVIGAAFLTT   81 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~---~t~~~~l~g~i~~~~~a~~~~~-~~~~~~~~~~~~~~~llylgi~~T~la~~   81 (178)
                      ++|+.||+|+++.||...+....+.   +..+.-++.-+.+.|...+... ....+..+.......+++.+.++|+++=+
T Consensus       254 ~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDy  333 (416)
T KOG2765|consen  254 LSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDY  333 (416)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHH
Confidence            5799999999999988766531222   2222333333333333322211 01112222223455678889999999999


Q ss_pred             HHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           82 LLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        82 l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      +|.++.-..+|-.+.+-+.++-..+++...++=|.++++..++|.+.|++|.++++...+
T Consensus       334 lW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  334 LWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             HHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            999999999999999999998889999999999999999999999999999999987654

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.27  E-value=2.4e-05  Score=65.48  Aligned_cols=131  Identities=14%  Similarity=0.201  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccch-hcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK-LRLDVGLFAIAYSAVIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~-~~~~~~~~~llylgi~~T~la~~l~~   84 (178)
                      .|-+.|+.-..+.|- .+..| +..+.+.....+...++.+-....+...-++ ...+..++..+..++..+ .-+.+|.
T Consensus        14 ~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~-~nW~lfi   90 (293)
T COG2962          14 LAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG-LNWWLFI   90 (293)
T ss_pred             HHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHhh
Confidence            455667777776554 56665 6788888888777776665554432211111 122234566666565543 5889999


Q ss_pred             HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      |++++-..-.+|+=++++|++.+++|.++++|+++..|++..++-.+||..-.|.
T Consensus        91 WAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          91 WAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             eecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999886653

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.18  E-value=4.6e-05  Score=64.08  Aligned_cols=130  Identities=14%  Similarity=0.123  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhhcC-h--HHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030367           10 AFIILEFFQAITLKEFP-A--LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWC   86 (178)
Q Consensus        10 ~~A~y~i~~~~~~~~~~-~--~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~   86 (178)
                      ++..|.+++.++.++.. .  +..++..|++...+...+.......+... .    ..+...+..+ +...++-.+.+++
T Consensus        11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~-~~~~~~~~~~~~a   84 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSR-K----IPLKKYAILS-FLFFLASVLSNAA   84 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCC-c----ChHHHHHHHH-HHHHHHHHHHHHH
Confidence            45567778888776632 3  77899999999888877665544311111 1    1122222223 3455677888999


Q ss_pred             HhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccccc
Q 030367           87 LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN  145 (178)
Q Consensus        87 l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~  145 (178)
                      +++++...-.++-...|+..++++++++|++.+.+++++.+++.+|+.+....+.+.++
T Consensus        85 l~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   85 LKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            99999999999999999999999999999999999999999999999998877655444

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.16  E-value=3.1e-05  Score=64.98  Aligned_cols=124  Identities=15%  Similarity=0.116  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHH-HHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLF-AIAYSAVIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~-~llylgi~~T~la~~l~~   84 (178)
                      +++++|+...+..|+.. ..+ +..+.  .+.+|++...........+.  ... . ..+. +++. |+ .=+++...|+
T Consensus         8 ia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~-~-~~~~~g~l~-G~-~w~ig~~~~~   77 (290)
T TIGR00776         8 IPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FWA-L-SIFLVGLLS-GA-FWALGQINQF   77 (290)
T ss_pred             HHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--ccc-c-HHHHHHHHH-HH-HHHhhhhhHH
Confidence            57899999999888764 343 33333  35556665554444332211  110 0 1111 2221 11 1456789999


Q ss_pred             HHHhhcCcceeeechh-hHHHHHHHHHHHHhcCCcchHH----HHHHHHHHHHHHHHHhc
Q 030367           85 WCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~-l~Pv~a~i~g~l~LgE~lt~~~----iiG~~lIl~Gv~l~~~~  139 (178)
                      .++|+.|.+.+-.+.+ +.|+++.+++.+++||+.+.++    ++|.++++.|++++...
T Consensus        78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            9999999999988888 8999999999999999999999    99999999998887544

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.13  E-value=5.8e-06  Score=70.36  Aligned_cols=139  Identities=18%  Similarity=0.199  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHHHHHh--hcC-hHHHHHHHHHHHHHHHHH-HHHHHhccccc-cchh-cchhHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLK--EFP-ALIVMLCYQYFFSTILAA-MFSLTVVTELS-AWKL-RLDVGLFAIAYSAVIGAAFL   79 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~--~~~-~~l~~t~~~~l~g~i~~~-~~a~~~~~~~~-~~~~-~~~~~~~~llylgi~~T~la   79 (178)
                      .+.++.+...++++++.+  ++. +++.+..++.-++.+.++ |+....+++.. .+.. .+.......++.. ++..+-
T Consensus       170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~  248 (316)
T KOG1441|consen  170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLL  248 (316)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHH
Confidence            356778888999998884  322 578888888888888888 88777665432 0000 1111223333333 233333


Q ss_pred             HHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccccc
Q 030367           80 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN  145 (178)
Q Consensus        80 ~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~  145 (178)
                      ....++.+.+.+|..-++...+--++.++.|+++++|++++.++.|.++.++|+++..+.|.++++
T Consensus       249 Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  249 NLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            455678899999999999999999999999999999999999999999999999999988776654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.11  E-value=1.8e-05  Score=57.50  Aligned_cols=69  Identities=19%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           72 AVIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        72 gi~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      .+++-+++|.++..++|+++.+.+ +++.-+.-+..++.|++++||++++.+++|.++|+.|++..+...
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            455667899999999999988755 445667888899999999999999999999999999999987654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.00  E-value=0.00025  Score=58.23  Aligned_cols=74  Identities=15%  Similarity=0.293  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           63 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        63 ~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      ..|+-+..+++ ++.++.++-+.-+...||-.-|+.+..--.|+++.++++++.+++.+||+|.++++.|+..=.
T Consensus       239 ~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  239 YVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            34666666666 889999999999999999999999999999999999999999999999999999999988644

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.93  E-value=0.00027  Score=59.08  Aligned_cols=118  Identities=8%  Similarity=0.019  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      +++++|+....+.|...++.+ |..+.++.++++++.++++......   .++   ...+...+..|++ ..+.+.++++
T Consensus        19 la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~~---~~~~~~~~~~g~~-~~~~~~~~~~   90 (293)
T PRK10532         19 IAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RFA---KEQRLPLLFYGVS-LGGMNYLFYL   90 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cCC---HHHHHHHHHHHHH-HHHHHHHHHH
Confidence            578899999999998888885 8999999999999888765432111   111   1234444445554 4566778999


Q ss_pred             HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      ++++.+++.++.+.+..|++..+++.    |+..  ...+.++.++|+++..
T Consensus        91 al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~  136 (293)
T PRK10532         91 SIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLL  136 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheee
Confidence            99999999999999999999988773    5554  3456667788887754

>TIGR00803 nst UDP-galactose transporter

Probab=97.92  E-value=2.4e-05  Score=62.77  Aligned_cols=63  Identities=16%  Similarity=0.143  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367           73 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV  135 (178)
Q Consensus        73 i~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l  135 (178)
                      ++..+++..+-.+.+|+.++...+....++++++.+++++++||++++.+++|+.+++.|+++
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            345667777899999999999999999999999999999999999999999999999998754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.89  E-value=6.8e-05  Score=54.07  Aligned_cols=68  Identities=24%  Similarity=0.400  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           73 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        73 i~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      +++-.++|.+...++|+++-..+ +++.-+--+.+++.|++++||++++..++|.+++++|+...+...
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            34446789999999999887743 778888889999999999999999999999999999999887653

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.86  E-value=0.00042  Score=50.33  Aligned_cols=65  Identities=15%  Similarity=0.237  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           73 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        73 i~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      +.+-+++|.+...++|+++.+.+ +++.-+--+.+++.|++++||++++.+++|.++|+.|+...+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            44556889999999999988754 667778888999999999999999999999999999998864

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.76  E-value=0.00015  Score=52.24  Aligned_cols=67  Identities=15%  Similarity=0.297  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           73 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        73 i~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      +.+-+++|.+...++|+++.+.+ +++.-+--+.+++.|++++||++++.+++|.++|+.|+...+..
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            45557899999999999988744 67777888999999999999999999999999999999987643

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.65  E-value=2.9e-05  Score=64.55  Aligned_cols=62  Identities=11%  Similarity=0.186  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           79 LTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        79 a~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      +-.+.+|+.++.+-+.++++++..|+++.+++|++|+|++|....+|..+.+.|+.+..+++
T Consensus       110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            44566788999999999999999999999999999999999999999999999999877654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.59  E-value=4e-05  Score=63.74  Aligned_cols=77  Identities=23%  Similarity=0.197  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           63 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        63 ~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      ..|+-++.+|+++ .+++.+-..++++--+.++++..+..-++|.++-++++||.++++.++|+++|+.....+..+|
T Consensus       251 kdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  251 KDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             cceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            3466677788866 5688899999999999999999999999999999999999999999999999998877766544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.58  E-value=0.00019  Score=50.46  Aligned_cols=57  Identities=26%  Similarity=0.396  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 030367           73 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII  129 (178)
Q Consensus        73 i~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lI  129 (178)
                      +.+-+++|.++.+++|+++.+.+ +++.-+..+...+.|++++||++++.+++|..+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            34566889999999999999888 6667789999999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.47  E-value=0.0028  Score=52.95  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhhcCcceeeechhhHHHH-HHHHHHHHhcCCcchHH----HHHHHHHHHHHHHHHhccccccc
Q 030367           75 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILF-STVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVMWGKAKEEN  145 (178)
Q Consensus        75 ~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~-a~i~g~l~LgE~lt~~~----iiG~~lIl~Gv~l~~~~~~~~~~  145 (178)
                      .=.++...|+++.++.|.+++-.+..-..++ +.+.|++++||.-+..+    +++.++++.|+++..++++++++
T Consensus        54 ~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   54 FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            3457899999999999999998888665555 78899999999877654    44788899999998877765554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.39  E-value=0.0041  Score=46.87  Aligned_cols=126  Identities=13%  Similarity=0.117  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      ++...-++...+..++.++..+|+.-+.+.+..|.+.+..+.++.++.  .+....+..|+.  |+|=+..++--....+
T Consensus         8 ~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~--~lGG~lG~~~V~~~~~   83 (138)
T PF04657_consen    8 LAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWA--YLGGLLGVFFVLSNII   83 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHH--hccHHHHHHHHHHHHH
Confidence            345556666666667766665589999999999999988887766542  221111112332  2233344455667788


Q ss_pred             HHhhcCcceeeechhh-HHHHHHHHHHH----HhcCCcchHHHHHHHHHHHHHHH
Q 030367           86 CLMRAGPLYVSMFKPL-AILFSTVMGVI----IFGDGLFLGSLVGAVIIVIGFYV  135 (178)
Q Consensus        86 ~l~~~~~~~~sl~~~l-~Pv~a~i~g~l----~LgE~lt~~~iiG~~lIl~Gv~l  135 (178)
                      .++++|++.+...... +=+.+.++..+    .-.+++++..++|.++++.|+++
T Consensus        84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            8999999977766655 45555666664    24578999999999999999864

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.16  E-value=0.011  Score=50.98  Aligned_cols=76  Identities=13%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           65 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        65 ~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      |+--+.+++ .=+.|-.+++.+.++.+.+.+.++....-++++++++++|+|++++.|++|.++.++|+.++.....
T Consensus        79 ~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   79 WWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            444333454 4457899999999999999999999999999999999999999999999999999999998887654

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.14  E-value=0.00085  Score=55.17  Aligned_cols=67  Identities=16%  Similarity=0.282  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367           78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE  144 (178)
Q Consensus        78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~  144 (178)
                      +.-.+++.++++++|+.--+.....-++++++++++|+.+++..||++..++.+|+.+++......+
T Consensus        29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~   95 (244)
T PF04142_consen   29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS   95 (244)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence            4567778899999999999999999999999999999999999999999999999999887765543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=96.92  E-value=0.012  Score=48.99  Aligned_cols=124  Identities=10%  Similarity=0.116  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHH-HHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSA-VIGAAFLTTLLL   84 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylg-i~~T~la~~l~~   84 (178)
                      .+|-+||+.++...-+.|+.+ ...+....-++|++...+= ++++... .....+  .|--..|+. .++-.+=|.+.-
T Consensus       173 ~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~-~~tl~w--~~~i~~yl~f~L~MFllYsl~p  247 (336)
T KOG2766|consen  173 AGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHH-VSTLHW--DSAIFLYLRFALTMFLLYSLAP  247 (336)
T ss_pred             ecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccc-eeeEee--hHHHHHHHHHHHHHHHHHHhhH
Confidence            356778888887777777774 6778778888898888766 4444321 111111  122223333 333444555566


Q ss_pred             HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367           85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  136 (178)
Q Consensus        85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~  136 (178)
                      ..+|..|++...+-....-.++.+.  ..+|=+++|.-.+..+.+..|+++.
T Consensus       248 il~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY  297 (336)
T KOG2766|consen  248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY  297 (336)
T ss_pred             HheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence            6788889988888888888888887  6677789999999999999998875

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.90  E-value=0.015  Score=50.33  Aligned_cols=128  Identities=11%  Similarity=0.001  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH-----hcccc-ccchhcchhHH-HHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLT-----VVTEL-SAWKLRLDVGL-FAIAYSAVIGAAF   78 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~-----~~~~~-~~~~~~~~~~~-~~llylgi~~T~l   78 (178)
                      ++++||+-+++-+|+ .|+.+  .+.. |-  +++++..++..+     ..++. ..........+ .+++. |+ -=.+
T Consensus        14 i~~~~~GS~~~p~K~-~k~w~--wE~~-W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~-G~-~W~i   85 (345)
T PRK13499         14 IGGASSGSFYAPFKK-VKKWS--WETM-WS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF-GA-LWGI   85 (345)
T ss_pred             HHHHHhhcccccccc-cCCCc--hhHH-HH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH-HH-HHHh
Confidence            688999999998887 55553  4443 44  222232222221     11111 11111111122 22222 33 2346


Q ss_pred             HHHHHHHHHhhcCcceeeec-hhhHHHHHHHHHHHHhcCCc-------chHHHHHHHHHHHHHHHHHhccc
Q 030367           79 LTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGL-------FLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        79 a~~l~~~~l~~~~~~~~sl~-~~l~Pv~a~i~g~l~LgE~l-------t~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      +...|..++|++|-+++-.+ +-+.=+.+.+++.+++||--       ....++|.++++.|+.+..+.-.
T Consensus        86 G~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         86 GGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             hhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            89999999999999976554 44577889999999999754       23578899999999999987433

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.84  E-value=0.0067  Score=50.88  Aligned_cols=127  Identities=16%  Similarity=0.238  Sum_probs=83.0

Q ss_pred             HHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhccccccchhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030367           15 EFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL--DVGLFAIAYSAVIGAAFLTTLLLWCLMRAG   91 (178)
Q Consensus        15 ~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~--~~~~~~llylgi~~T~la~~l~~~~l~~~~   91 (178)
                      --+|.+..+.+| +...+..+...+|...++......++-...|..-.  +....+.+++=-..+-++...-...++..|
T Consensus       206 GNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fG  285 (367)
T KOG1582|consen  206 GNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFG  285 (367)
T ss_pred             hHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhc
Confidence            334555555554 23445555555666555544443332223343211  111222222222334455555566788899


Q ss_pred             cceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           92 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        92 ~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      +..++..+..---++.+++++++..|+|.+..-|+.+|+.|+++...+|+
T Consensus       286 A~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  286 ALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             hhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            99999999999999999999999999999999999999999999888774

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=96.72  E-value=0.061  Score=45.77  Aligned_cols=109  Identities=18%  Similarity=0.162  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccc-c----cchh-cchhHHHHHHHHHHHHHHHHHHHH---HHHHhhcCcceeee
Q 030367           27 ALIVMLCYQYFFSTILAAMFSLTVVTEL-S----AWKL-RLDVGLFAIAYSAVIGAAFLTTLL---LWCLMRAGPLYVSM   97 (178)
Q Consensus        27 ~~l~~t~~~~l~g~i~~~~~a~~~~~~~-~----~~~~-~~~~~~~~llylgi~~T~la~~l~---~~~l~~~~~~~~sl   97 (178)
                      +|+.......-.-.+.++|..+.+|+.. .    .|.. .....+..+.+++. +..++|.+-   +..+.+.+.-..|+
T Consensus       196 ~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSI  274 (349)
T KOG1443|consen  196 NPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSI  274 (349)
T ss_pred             CCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeH
Confidence            3555444444445556677777777532 1    1221 11123444444333 334455443   34567788889999


Q ss_pred             chhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367           98 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  136 (178)
Q Consensus        98 ~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~  136 (178)
                      ..-..=+...++|.++++|+++...++|..+.+.|+.+-
T Consensus       275 aGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  275 AGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998875

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.60  E-value=0.013  Score=49.70  Aligned_cols=126  Identities=21%  Similarity=0.279  Sum_probs=86.0

Q ss_pred             HHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhcccc-ccch--hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030367           15 EFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL-SAWK--LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA   90 (178)
Q Consensus        15 ~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~~~~-~~~~--~~~~~~~~~llylgi~~T~la~~l~~~~l~~~   90 (178)
                      ...|+++.+++. ++..+....-+++++..... ++..+.. ....  -..+..+.-++-... +.++++.+-++-+++-
T Consensus       188 n~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~F  265 (327)
T KOG1581|consen  188 NATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERF  265 (327)
T ss_pred             HhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhc
Confidence            345677776543 34555555555555554433 3332211 1111  111234555544455 4556888888999999


Q ss_pred             CcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367           91 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  142 (178)
Q Consensus        91 ~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~  142 (178)
                      |+-.-..++..=-+++++++.+.+|.++++.|++|..+++.|+++-..-|+|
T Consensus       266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999986654443

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.60  E-value=0.0015  Score=55.41  Aligned_cols=67  Identities=19%  Similarity=0.326  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367           72 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  138 (178)
Q Consensus        72 gi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~  138 (178)
                      |+...+++..+.+.+....+++.++.+..+.=++.++++..++||+++..+++|.++++.|..+...
T Consensus        56 G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   56 GLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            3333445556667788888999999999999999999999999999999999999999999876553

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.55  E-value=0.043  Score=42.01  Aligned_cols=132  Identities=11%  Similarity=0.100  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW   85 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~   85 (178)
                      ++..+-.+...+..|+.+...+|+.-..+.++.|.+.+..+..+.++.+ .+....+..|+..+- |+++..+ -+.-..
T Consensus        12 ~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~~G-G~lGa~~-vt~s~~   88 (150)
T COG3238          12 LAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAWIG-GLLGAIF-VTSSIL   88 (150)
T ss_pred             HHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHHHc-cchhhhh-hhhhHH
Confidence            4455556666666677666656888888999999999988877744322 222111112332221 3333221 122344


Q ss_pred             HHhhcCccee-eechhhHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           86 CLMRAGPLYV-SMFKPLAILFSTVMGVIIFG----DGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        86 ~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~Lg----E~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      ...|+|++.. .+...-+=+.+++++-+=+.    -++++..++|.+++++|+++.++++
T Consensus        89 l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          89 LAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            5667777643 33444455566666655444    6789999999999999977665443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.43  E-value=0.045  Score=45.01  Aligned_cols=122  Identities=17%  Similarity=0.191  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhcChHHHHHHHH-HHHHHHHHHHHHHHhcccc-ccchhcchhHHHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPALIVMLCYQ-YFFSTILAAMFSLTVVTEL-SAWKLRLDVGLFAIAYSAVIGAAFLTTLL   83 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~-~l~g~i~~~~~a~~~~~~~-~~~~~~~~~~~~~llylgi~~T~la~~l~   83 (178)
                      .++++-++..++..|++|+...++..--.| .+.|.++.++.....+.+. ..... . ..+-...+..++..+++=.+-
T Consensus       121 ~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~-f-~G~~~~~~~~i~~~a~gGllv  198 (244)
T PF04142_consen  121 AAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGF-F-HGYSWWVWIVIFLQAIGGLLV  198 (244)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCc-h-hhcchHHHHHHHHHHHhhHHH
Confidence            456777888888888888864344444444 4445544444433322111 10000 0 011122333444555555566


Q ss_pred             HHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 030367           84 LWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII  129 (178)
Q Consensus        84 ~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lI  129 (178)
                      ...+|+.+...=+.-..+.=+.+.+++++++|.+++....+|.+++
T Consensus       199 a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  199 AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            6778888888777888888899999999999999999999998763

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.35  E-value=0.14  Score=44.09  Aligned_cols=131  Identities=18%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhcc-ccccchh----cchhHHHHHHHHHHHHHHHHHH
Q 030367            7 KMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVT-ELSAWKL----RLDVGLFAIAYSAVIGAAFLTT   81 (178)
Q Consensus         7 aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~-~~~~~~~----~~~~~~~~llylgi~~T~la~~   81 (178)
                      +|..-+.-.++-.+++|+-..++.+--.|+-+-+++...+...... ....|..    .....|+.++-.++.+     .
T Consensus       191 ~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gG-----L  265 (345)
T KOG2234|consen  191 ACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVGG-----L  265 (345)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhccc-----h
Confidence            4555566666777777764435666666665545444444443321 1111221    1112344444444433     3


Q ss_pred             HHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367           82 LLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  142 (178)
Q Consensus        82 l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~  142 (178)
                      +-...+|+.+-..=+....+.-+++.+.++.+++-++|....+|..+++..+.+....+.+
T Consensus       266 lvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~  326 (345)
T KOG2234|consen  266 LVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR  326 (345)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence            4444555555554455556777889999999999999999999999999999998844443

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.32  E-value=0.007  Score=44.21  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhhcCcceeeech-hhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367           78 FLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  136 (178)
Q Consensus        78 la~~l~~~~l~~~~~~~~sl~~-~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~  136 (178)
                      .+-.+|++.+.+.+-+.+.... .+.=+++++.|+++.+|..+...++|.++|+.|+.++
T Consensus        53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            4567788899999999998886 7888999999988878888989999999999998753

Many members are annotated as potential transmembrane proteins.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.25  E-value=0.039  Score=45.19  Aligned_cols=123  Identities=15%  Similarity=0.170  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHhh--cChHHHHHHHHHHHHHHHHHHHHHHhccc-cccchhcc-hhHHHHHHHHHHHHHHHHHHH
Q 030367            7 KMMAFIILEFFQAITLKE--FPALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRL-DVGLFAIAYSAVIGAAFLTTL   82 (178)
Q Consensus         7 aal~~A~y~i~~~~~~~~--~~~~l~~t~~~~l~g~i~~~~~a~~~~~~-~~~~~~~~-~~~~~~llylgi~~T~la~~l   82 (178)
                      .+++-+.|.+..|+..|-  .. ...-..+.-+.+--.++.+++++|.. +.+..... .....+++-.|+ +++.--..
T Consensus       163 NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiSy~  240 (309)
T COG5070         163 NCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGISYC  240 (309)
T ss_pred             hhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhhhc
Confidence            467778888887766432  22 35566677777777777777777642 11111111 123345555555 44444455


Q ss_pred             HHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 030367           83 LLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI  131 (178)
Q Consensus        83 ~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~  131 (178)
                      -.|+++-.+.+.-|+...++-.-.++.|.++++|+.+...+....+-..
T Consensus       241 saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl  289 (309)
T COG5070         241 SAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL  289 (309)
T ss_pred             cceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999988877543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.1  Score=44.44  Aligned_cols=134  Identities=10%  Similarity=0.142  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhcccc------ccchhcchhHHHHHHHHHHHHHHHHH
Q 030367            8 MMAFIILEFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL------SAWKLRLDVGLFAIAYSAVIGAAFLT   80 (178)
Q Consensus         8 al~~A~y~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~~~~------~~~~~~~~~~~~~llylgi~~T~la~   80 (178)
                      +++-+.|.+..|+..+.-. +...+..+.-+..-..+..+.+++++-.      +.|..  ...+..++..++.+-++.|
T Consensus       166 ~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~~lScv~gf~isy  243 (314)
T KOG1444|consen  166 CLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVMLLSCVMGFGISY  243 (314)
T ss_pred             HHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHHHHHHHHHHHHHH
Confidence            4445566666666544321 2345666777777777777766654311      11221  2346778888888888888


Q ss_pred             HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367           81 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE  144 (178)
Q Consensus        81 ~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~  144 (178)
                      ..+ |+.+..+++..++.....=..+.+.+.++.++++++..++|..+-+.|=.+.+..+.+++
T Consensus       244 ~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k  306 (314)
T KOG1444|consen  244 TSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK  306 (314)
T ss_pred             HHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence            765 788888999999998777777888888888999999999999997766555555554443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.46  E-value=0.15  Score=42.58  Aligned_cols=58  Identities=22%  Similarity=0.348  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHH
Q 030367           78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG----SLVGAVIIVIGFYV  135 (178)
Q Consensus        78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~----~iiG~~lIl~Gv~l  135 (178)
                      ++-..+..+.++.|.+.+=.+.-+..+++.+.|.++|||+=+.+    .++|.++|+.|..+
T Consensus       207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            46667888999999999999999999999999999999998765    55688888777553

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.024  Score=47.64  Aligned_cols=140  Identities=11%  Similarity=0.049  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHhccccccch--hc-chhHHHHHHHHHHHHHHHHHH
Q 030367            6 QKMMAFIILEFFQAITLKEFPA-LIVMLCYQYFFSTILAAMFSLTVVTELSAWK--LR-LDVGLFAIAYSAVIGAAFLTT   81 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~~-~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~--~~-~~~~~~~llylgi~~T~la~~   81 (178)
                      .|+++-|+..+..||......+ ...++++.-..+.++++|.-.+.++-...+.  .. ....|..+...|+++-.++|.
T Consensus       192 laSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyv  271 (347)
T KOG1442|consen  192 LASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYV  271 (347)
T ss_pred             HHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhe
Confidence            5778888888888876554433 5678888888888888888665432111111  11 113456666777776666554


Q ss_pred             HHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367           82 LLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT  146 (178)
Q Consensus        82 l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~  146 (178)
                      - .|=+|-.+|-.=-+...---..=.++++.+++|..+..-|-|-++|+.|-....+.|++++++
T Consensus       272 T-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~  335 (347)
T KOG1442|consen  272 T-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK  335 (347)
T ss_pred             e-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence            3 233566666666666666666778899999999999999999999999988888877766543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.70  E-value=0.014  Score=48.21  Aligned_cols=66  Identities=15%  Similarity=0.219  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhhcCcceeeechhh-HHHHHHHHHHHHhcCCcchHHH----HHHHHHHHHHHHHHhcccc
Q 030367           77 AFLTTLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVVMWGKAK  142 (178)
Q Consensus        77 ~la~~l~~~~l~~~~~~~~sl~~~l-~Pv~a~i~g~l~LgE~lt~~~i----iG~~lIl~Gv~l~~~~~~~  142 (178)
                      .+++..|+++++..|.+++...+.- +=+-+.++|++.+||.-+..++    +..++++.|+++..+.++.
T Consensus        70 s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~  140 (288)
T COG4975          70 SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN  140 (288)
T ss_pred             hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence            3688999999999999999888776 5556789999999999998754    4567788888887665543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.56  E-value=0.12  Score=44.49  Aligned_cols=61  Identities=18%  Similarity=0.171  Sum_probs=55.5

Q ss_pred             HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           81 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        81 ~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      .+++.+..+++|+.-.+.+.+-=+.++++.+++|+++++..||...++...|+.++++...
T Consensus       107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen  107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence            3667778889999999999999999999999999999999999999999999999995443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=94.44  E-value=0.66  Score=39.17  Aligned_cols=65  Identities=14%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHhhc----CcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           73 VIGAAFLTTLLLWCLMRA----GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        73 i~~T~la~~l~~~~l~~~----~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      +++..+++..-.+++..+    .+-.+++...+--.++.+++++.+..++++++++|+++++.|-++..
T Consensus       245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            344455555555555444    44467778888899999999999999999999999999999977654

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=93.77  E-value=0.073  Score=38.28  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367          107 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  136 (178)
Q Consensus       107 ~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~  136 (178)
                      +.++++++||++++.++.|.++++.+++.+
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            456789999999999999999999998764

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=93.76  E-value=0.025  Score=48.38  Aligned_cols=101  Identities=15%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             HHHHHHh--hcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcce
Q 030367           17 FQAITLK--EFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLY   94 (178)
Q Consensus        17 ~~~~~~~--~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~~~~~   94 (178)
                      +.|..++  ..+-|..++..+...+.+.....-.+--.+..  +......+..++-+|++- .++..+-+.++++.+.+.
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF  111 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSF  111 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHHHH-HHHHHhcchhhhccchhH
Confidence            3456666  44457888888777777776655443211111  111123466666666654 357788889999999999


Q ss_pred             eeechhhHHHHHHHHHHHHhcCCcch
Q 030367           95 VSMFKPLAILFSTVMGVIIFGDGLFL  120 (178)
Q Consensus        95 ~sl~~~l~Pv~a~i~g~l~LgE~lt~  120 (178)
                      .-..-.++|++.+++++++.+|+.+.
T Consensus       112 ~q~iKa~~P~~tvl~~~~~~~~~~s~  137 (316)
T KOG1441|consen  112 YQTIKALMPPFTVLLSVLLLGKTYSS  137 (316)
T ss_pred             HHHHHhhcchhHHHHHHHHhCCCCcc
Confidence            99999999999999999999999887

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.74  E-value=0.025  Score=45.53  Aligned_cols=64  Identities=16%  Similarity=0.259  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      .+-++|..++++++|+.++.+..-+--|..+++++.||+++....++..++-+.|+.+..+..+
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            3577899999999999999999999999999999999999999999999999999887665544

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.51  E-value=0.017  Score=49.26  Aligned_cols=71  Identities=17%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367           73 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  143 (178)
Q Consensus        73 i~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~  143 (178)
                      ++.-+++-..-+-+-...+++.++.+..+.-++.++++..+|+|++++...+|+++.++|-.+......++
T Consensus        71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e  141 (335)
T KOG2922|consen   71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE  141 (335)
T ss_pred             HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence            33333344444444445688889999999999999999999999999999999999999965544333333

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.41  E-value=0.045  Score=47.68  Aligned_cols=66  Identities=14%  Similarity=0.213  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367           78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  143 (178)
Q Consensus        78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~  143 (178)
                      +|.+.++-++++.+.+...+.....-+|+.++|.++.+|++++...++..+=+.|++++..++.+.
T Consensus       171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            567788899999999999999999999999999999999999999999999999999988776544

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.44  E-value=0.3  Score=34.83  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367          105 FSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus       105 ~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      +-+.++++.++|++.|.++.|..+++.|++++-
T Consensus        82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF  114 (116)
T COG3169          82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF  114 (116)
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence            335689999999999999999999999998765

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=91.91  E-value=1.1  Score=37.90  Aligned_cols=69  Identities=28%  Similarity=0.291  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCcceeeechhh-HHHHHHHHHHHHhcCC--cch----HHHHHHHHHHHHHHHHHhccc
Q 030367           73 VIGAAFLTTLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVIIFGDG--LFL----GSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        73 i~~T~la~~l~~~~l~~~~~~~~sl~~~l-~Pv~a~i~g~l~LgE~--lt~----~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      +.+...-...-|+++++.+++.+....+. --.++++-|.++++|.  +++    ....|..+++.|+++....|+
T Consensus       220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence            33444445555789999999977766655 6677788888899976  444    356678889999998765443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.08  E-value=0.68  Score=38.42  Aligned_cols=130  Identities=12%  Similarity=0.119  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHhh-cC--h--------HHHHHHHHHHHHHHHHHHHHHHhccccccchhcchh--HHHHHHHHHHHH
Q 030367            9 MAFIILEFFQAITLKE-FP--A--------LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDV--GLFAIAYSAVIG   75 (178)
Q Consensus         9 l~~A~y~i~~~~~~~~-~~--~--------~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~--~~~~llylgi~~   75 (178)
                      +||=+|-+.|.|..+. |.  +        .+.+.+.|+....++.=++..+....  ..+.....  ..-++-|++   
T Consensus        23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~--~~D~t~~~~YaAcs~sYLl---   97 (337)
T KOG1580|consen   23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT--EIDNTPTKMYAACSASYLL---   97 (337)
T ss_pred             heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc--cccCCcchHHHHHHHHHHH---
Confidence            5777888888887654 42  1        45566777777776654443332211  11111100  111233332   


Q ss_pred             HHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367           76 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT  146 (178)
Q Consensus        76 T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~  146 (178)
                         |..--|.+++.++=-..-+--.--|+=.+++|+++.+..-+|....=..+|++|+.+..++.+|....
T Consensus        98 ---AMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~  165 (337)
T KOG1580|consen   98 ---AMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGA  165 (337)
T ss_pred             ---HHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCC
Confidence               33334666777665545555667788889999999999999999999999999999999876665543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.62  E-value=3.8  Score=35.06  Aligned_cols=123  Identities=11%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHH----HHHHHhhcChHH--HHHHHHHHHHHHHHHHHHHHh--ccccccchhcchhHH--HHHHHHHHHH
Q 030367            6 QKMMAFIILEFF----QAITLKEFPALI--VMLCYQYFFSTILAAMFSLTV--VTELSAWKLRLDVGL--FAIAYSAVIG   75 (178)
Q Consensus         6 ~aal~~A~y~i~----~~~~~~~~~~~l--~~t~~~~l~g~i~~~~~a~~~--~~~~~~~~~~~~~~~--~~llylgi~~   75 (178)
                      +++++|++-.++    -|-.+..|+-|.  .+...|.+.+.+.....-..-  +.++-+|..  ...|  ..++|.+-+-
T Consensus        15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~~i~   92 (314)
T KOG1444|consen   15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVGMLF   92 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHHHHH
Confidence            566666665443    333344444334  444599999888777665532  112222321  1234  3567766655


Q ss_pred             HHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367           76 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  136 (178)
Q Consensus        76 T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~  136 (178)
                      |.      .+++|+++.....++-.+.|++.++...+++|-+++...+.....+++|-...
T Consensus        93 t~------~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~  147 (314)
T KOG1444|consen   93 TG------SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA  147 (314)
T ss_pred             Hc------cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence            54      45788999999999999999999999999999999999999888888876553

>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed

Probab=89.54  E-value=3.3  Score=37.33  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=24.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHhccccccccccccC
Q 030367          118 LFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRG  151 (178)
Q Consensus       118 lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~  151 (178)
                      ++..|++...++++|+++..+.++++++++..++
T Consensus       254 l~~~Q~lSl~~il~gl~~~~~~~~~~~~~~~~~~  287 (460)
T PRK13108        254 IRINSFTSTFVFIGAVVYIILAPKGREAPGALRG  287 (460)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhccCCCccccCC
Confidence            7889999999999999887765554444433333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=88.65  E-value=19  Score=32.85  Aligned_cols=41  Identities=15%  Similarity=0.132  Sum_probs=20.8

Q ss_pred             echhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           97 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        97 l~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      .+....|+-+.+.|.+.=.-.+.....++++.++.+..+..
T Consensus       351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            44445677777777654333333334444444444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins

Probab=87.32  E-value=9.7  Score=28.64  Aligned_cols=70  Identities=16%  Similarity=0.236  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHHHHhcccc
Q 030367           64 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI-IVIGFYVVMWGKAK  142 (178)
Q Consensus        64 ~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~l-Il~Gv~l~~~~~~~  142 (178)
                      .+....-+.+++.++-|..-.++.||.|.++.+.+...   .+.+.|.+++. +      +|..+ -+.|.++.++-++|
T Consensus        32 ~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga~---iG~IvG~f~~~-p------~G~iiG~~~Ga~l~El~~~~  101 (140)
T PF04306_consen   32 FLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGAI---IGGIVGFFVLP-P------LGLIIGPFLGAFLGELLRGK  101 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHHHHHhh-H------HHHHHHHHHHHHHHHHHhCC
Confidence            35556677888999999999999999999999988665   78888887765 1      14333 45778888875444


Q ss_pred             c
Q 030367          143 E  143 (178)
Q Consensus       143 ~  143 (178)
                      +
T Consensus       102 ~  102 (140)
T PF04306_consen  102 D  102 (140)
T ss_pred             C
Confidence            3

>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]

Probab=86.52  E-value=0.99  Score=34.35  Aligned_cols=26  Identities=15%  Similarity=0.202  Sum_probs=18.8

Q ss_pred             hhcCcceeeechhhHHHHHHHHHHHH
Q 030367           88 MRAGPLYVSMFKPLAILFSTVMGVII  113 (178)
Q Consensus        88 ~~~~~~~~sl~~~l~Pv~a~i~g~l~  113 (178)
                      ...+.-+++++.|+.|+++.+++.++
T Consensus        70 ~EkslL~sA~LvYi~PL~~l~v~~~L   95 (150)
T COG3086          70 EEKSLLKSALLVYIFPLVGLFLGAIL   95 (150)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567778888898888877755

>PRK02237 hypothetical protein; Provisional

Probab=86.35  E-value=1.3  Score=32.01  Aligned_cols=44  Identities=18%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             chhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           98 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        98 ~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      +.-+--+.+.+.++.+=|++++...++|+++.+.|+.+..+.+|
T Consensus        65 YGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         65 YGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             hhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            33344456778999999999999999999999999998877654

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=86.08  E-value=1  Score=38.21  Aligned_cols=65  Identities=12%  Similarity=0.164  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367           75 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  139 (178)
Q Consensus        75 ~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~  139 (178)
                      +-+.+-.+++.++....++.--+.---.-+|..+++.-+|+.+++..||+|...+.+|+.++...
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            44455566666666666665555555566899999999999999999999999999999987654

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=83.85  E-value=1.6  Score=31.53  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=36.3

Q ss_pred             hhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367           99 KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  141 (178)
Q Consensus        99 ~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~  141 (178)
                      .-+--+.+.+.++.+=|++++...++|+++.+.|+.+..+.+|
T Consensus        64 GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   64 GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            3344467888999999999999999999999999999887664

; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=81.37  E-value=10  Score=32.33  Aligned_cols=131  Identities=11%  Similarity=0.140  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhc----cc-----ccc-chhcchhHHH-----HHH
Q 030367            6 QKMMAFIILEFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV----TE-----LSA-WKLRLDVGLF-----AIA   69 (178)
Q Consensus         6 ~aal~~A~y~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~----~~-----~~~-~~~~~~~~~~-----~ll   69 (178)
                      .|-+.-|+..++-.|.++++. +|+....|+-++|.+.+.++...+.    ++     +.. |.- ....|-     -.+
T Consensus       183 iaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD-~~~~~~~~~e~p~l  261 (372)
T KOG3912|consen  183 IAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLED-WGDAFAALQESPSL  261 (372)
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhh-HHHHHHHhcCCchh
Confidence            355666777777777777643 5899999999999665555444331    11     100 110 000111     134


Q ss_pred             HHHHHHHHHHHHHHHHH----HhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367           70 YSAVIGAAFLTTLLLWC----LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  137 (178)
Q Consensus        70 ylgi~~T~la~~l~~~~----l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~  137 (178)
                      +.+..+..+.-.++|.+    -|..+++.=.+.-.+-..+-=+++.....|.++..|+.|.++.+.|+++.+
T Consensus       262 ~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  262 AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555444444433    466777777777777777777888888889999999999999999998866

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.37
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.09

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.37  E-value=7.1e-13  Score=98.91  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcceeeec-hhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           70 YSAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        70 ylgi~~T~la~~l~~~~l~~~~~~~~sl~-~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      .+++++++++|.+|++++|+.+++++..+ ..+.|++++++|++++||++++.+++|.++|++|+++.++.+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            36888999999999999999999999888 899999999999999999999999999999999999988654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.09  E-value=3.4e-10  Score=81.17  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcceeeec-hhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367           70 YSAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  140 (178)
Q Consensus        70 ylgi~~T~la~~l~~~~l~~~~~~~~sl~-~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~  140 (178)
                      ..++++.+++|.+|.+++|+.+.+.+..+ ..+.|++++++|++++||++++.+++|.++|+.|+++.+..+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            36778889999999999999999999777 899999999999999999999999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	88.29

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=88.29  E-value=3.7  Score=31.10  Aligned_cols=29  Identities=10%  Similarity=-0.107  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcceee
Q 030367           68 IAYSAVIGAAFLTTLLLWCLMRAGPLYVS   96 (178)
Q Consensus        68 llylgi~~T~la~~l~~~~l~~~~~~~~s   96 (178)
                      ++..|..........+....+..++...+
T Consensus       350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g  378 (447)
T d1pw4a_         350 MIVIGFLIYGPVMLIGLHALELAPKKAAG  378 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            33344444444555666667666665443