Citrus Sinensis ID: 030399

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPSCFFPS
Secondary Structure (PSIPRED)
ccEEEcccccccccccHHHHHHccccccccccccccEEEEccccccccccccccHHHHHcccccccccccEEEEEccccccccccccccEEEEccccccccEEEEEcccccHHHHHcccccccEEEEEEEccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcEEEcccccccccHHEcccccccccccccccccccccccccccccccHHHHHHHccccccccHHHEEEEEEcccccccccccccEEEEEccccccEEEEEEcHHHcHHHHcHHHHHHHHHHHHEHccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccHHccccccccc
Coil and Loop (DISEMBL)
machfayyyhafsltplrdlsanntnfrpsrkykpllfssinsssrasygtFVSEAVrllgppasfeasKLKVVFLGEgmndysrilprtyilsHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVrddmclhvhcyvsgpsLLRDLAAEFRYHIftkemplgshvpscffps
Flexible Loop (DISEMBL)
MACHFAYYYHAfsltplrdlsANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKemplgshvpscffps
Low Complexity Region (SEG)
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPSCFFPS
Disordered region (IsUnstruct)
**CHFAYYYHAFSLTPLRDLSANNT*******YKPLLFSSI*****ASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPSCF***
Disordered Region (DISOPRED)
*******YYHAFSLTPLRD**********************************SEAVRLLGPPASFEASKLKVVFLG********ILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPSCFFPS
Disordered Region (DISEMBL)
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPSCFFPS
Disordered Region (DISPRO)
*ACHFAYYYHAFSLTPLRDLSANN***********************SYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPSCFFP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPSCFFPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
224066773	222	predicted protein [Populus trichocarpa]	0.921	0.738	0.708	2e-59
225459718	251	PREDICTED: uncharacterized protein LOC10	0.915	0.649	0.654	4e-56
356515951	251	PREDICTED: uncharacterized protein LOC10	0.921	0.653	0.643	8e-53
255645687	251	unknown [Glycine max]	0.921	0.653	0.643	8e-53
356509357	254	PREDICTED: uncharacterized protein LOC10	0.921	0.645	0.626	9e-53
302141737	232	unnamed protein product [Vitis vinifera]	0.808	0.620	0.682	1e-52
449453011	244	PREDICTED: uncharacterized protein LOC10	0.887	0.647	0.652	2e-51
255558494	249	conserved hypothetical protein [Ricinus	0.887	0.634	0.635	2e-50
297852188	258	hypothetical protein ARALYDRAFT_891373 [	0.938	0.647	0.6	8e-47
8778672	299	F9C16.20 [Arabidopsis thaliana]	0.926	0.551	0.586	2e-45

>gi|224066773|ref|XP_002302208.1| predicted protein [Populus trichocarpa] gi|222843934|gb|EEE81481.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/168 (70%), Positives = 134/168 (79%), Gaps = 4/168 (2%)

Query: 1   MACHFAYYYHAFSLTP-LRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRL 59
           MACH A+Y  AFS +P +R  S NN     S+  KP + SSI++S RASY T VSEAVRL
Sbjct: 5   MACHCAHY--AFSPSPHMRYFSINNITKLSSKVTKPTVLSSIDNS-RASYNTLVSEAVRL 61

Query: 60  LGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWY 119
           LGPPA FEASKLKVV +GE MN YS I+PRTYILSHCDFTA+LTL ISNVINL+QLRGWY
Sbjct: 62  LGPPAKFEASKLKVVLMGEEMNQYSAIIPRTYILSHCDFTADLTLIISNVINLDQLRGWY 121

Query: 120 IKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
            KDDVV EWKK+   + LH HCYVSGP+LL DLAAEFRYHIF+KEMPL
Sbjct: 122 SKDDVVVEWKKLEGQLALHAHCYVSGPNLLLDLAAEFRYHIFSKEMPL 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459718|ref|XP_002284727.1| PREDICTED: uncharacterized protein LOC100252353 [Vitis vinifera]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/168 (65%), Positives = 134/168 (79%), Gaps = 5/168 (2%)

Query: 1   MACHFAYYYHAFSLTPLRD-LSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRL 59
           MACH A+    FS +P RD  S  +T+ +PSR  KP++ SSI S+ +ASY   V EA RL
Sbjct: 1   MACHCAF---PFSPSPQRDCFSMTHTSLKPSRASKPVVLSSIGST-KASYNALVFEAARL 56

Query: 60  LGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWY 119
           LGPPA F+ASKLKVV +GE +++YS I PR Y LSHCDFTANLTLTISN+I+L+QL+GWY
Sbjct: 57  LGPPAKFDASKLKVVPMGEEIDNYSGISPRVYTLSHCDFTANLTLTISNIISLDQLKGWY 116

Query: 120 IKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
            KDDVVAEWK+V+ + CLHVHCY+SGPSL  DLAAEFRYHIF+KE+PL
Sbjct: 117 NKDDVVAEWKEVKGEKCLHVHCYLSGPSLFLDLAAEFRYHIFSKELPL 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515951|ref|XP_003526660.1| PREDICTED: uncharacterized protein LOC100795181 [Glycine max]

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 129/171 (75%), Gaps = 7/171 (4%)

Query: 1   MACHFAYYYHAFSLTPLRDLSA-NNTNFRPSR---KYKPLLFSSINSSSRASYGTFVSEA 56
           MACH A Y +AFS +P R+  A N+   +PS    + +P L S  N++   SY T VSEA
Sbjct: 1   MACHCASY-NAFSFSPTREFFATNHIMSKPSSTTTRCRPFLLSITNAT--PSYNTLVSEA 57

Query: 57  VRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLR 116
           VRLL P A FE SKLKVV L + +N ++   PRTYILSHCDFTANLTL +SNVINLEQLR
Sbjct: 58  VRLLVPSARFEPSKLKVVLLEDQINKHASFTPRTYILSHCDFTANLTLAVSNVINLEQLR 117

Query: 117 GWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
           GWY KDDVVAEWKKV++DMCLHVHC+VSGP+   DLAAE RYHIF+KEMPL
Sbjct: 118 GWYEKDDVVAEWKKVQNDMCLHVHCFVSGPNSFLDLAAELRYHIFSKEMPL 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645687|gb|ACU23337.1| unknown [Glycine max]

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 129/171 (75%), Gaps = 7/171 (4%)

Query: 1   MACHFAYYYHAFSLTPLRDLSA-NNTNFRPSR---KYKPLLFSSINSSSRASYGTFVSEA 56
           MACH A Y +AFS +P R+  A N+   +PS    + +P L S  N++   SY T VSEA
Sbjct: 1   MACHCASY-NAFSFSPTREFFATNHIMSKPSSTTTRCRPFLLSITNAT--PSYNTLVSEA 57

Query: 57  VRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLR 116
           VRLL P A FE SKLKVV L + +N ++   PRTYILSHCDFTANLTL +SNVINLEQLR
Sbjct: 58  VRLLVPSARFEPSKLKVVLLEDQINKHASFTPRTYILSHCDFTANLTLAVSNVINLEQLR 117

Query: 117 GWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
           GWY KDDVVAEWKKV++DMCLHVHC+VSGP+   DLAAE RYHIF+KEMPL
Sbjct: 118 GWYEKDDVVAEWKKVQNDMCLHVHCFVSGPNSFLDLAAELRYHIFSKEMPL 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509357|ref|XP_003523416.1| PREDICTED: uncharacterized protein LOC100792871 [Glycine max]

 Score =  211 bits (537), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 10/174 (5%)

Query: 1   MACHFAYYYHAFSLTPLRDL----SANNTNFRPSR---KYKPLLFSSINSSSRASYGTFV 53
           MACH A Y +AF+ +P R+     + N+   + S    + +P L S  N++   SY T V
Sbjct: 1   MACHCASY-NAFTFSPTREFITTTTTNHIMSKTSSTTTRCRPFLLSITNAT--PSYNTLV 57

Query: 54  SEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLE 113
           SEAVRLL P A FEASKLKVV L + +N ++ I+PRTYILSHCDFTANLTL +SNVINLE
Sbjct: 58  SEAVRLLVPSARFEASKLKVVLLEDQINKHASIIPRTYILSHCDFTANLTLAVSNVINLE 117

Query: 114 QLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
           QLRGWY KDDVVAEWKKV++DMCLHVHC+VSGP+   DLAAE RYHIF+KEMPL
Sbjct: 118 QLRGWYEKDDVVAEWKKVQNDMCLHVHCFVSGPNSFLDLAAELRYHIFSKEMPL 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141737|emb|CBI18940.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/145 (68%), Positives = 121/145 (83%), Gaps = 1/145 (0%)

Query: 23  NNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMND 82
            +T+ +PSR  KP++ SSI S+ +ASY   V EA RLLGPPA F+ASKLKVV +GE +++
Sbjct: 2   THTSLKPSRASKPVVLSSIGST-KASYNALVFEAARLLGPPAKFDASKLKVVPMGEEIDN 60

Query: 83  YSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCY 142
           YS I PR Y LSHCDFTANLTLTISN+I+L+QL+GWY KDDVVAEWK+V+ + CLHVHCY
Sbjct: 61  YSGISPRVYTLSHCDFTANLTLTISNIISLDQLKGWYNKDDVVAEWKEVKGEKCLHVHCY 120

Query: 143 VSGPSLLRDLAAEFRYHIFTKEMPL 167
           +SGPSL  DLAAEFRYHIF+KE+PL
Sbjct: 121 LSGPSLFLDLAAEFRYHIFSKELPL 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453011|ref|XP_004144252.1| PREDICTED: uncharacterized protein LOC101219336 [Cucumis sativus] gi|449517751|ref|XP_004165908.1| PREDICTED: uncharacterized protein LOC101229994 [Cucumis sativus]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 128/167 (76%), Gaps = 9/167 (5%)

Query: 1   MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLL 60
           MA H   Y  +FS +P +       NF+  ++  P L  S  S++ ASY T VSEAVR+L
Sbjct: 1   MALHCVRY--SFSPSPAK------PNFKLVQRNNPALLFSSFSTTPASYNTLVSEAVRIL 52

Query: 61  GPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYI 120
            PPA FEASKLKVVF  E +   + I+PRTYILSHCDFTANLTLTIS+VINL+QLRGWY 
Sbjct: 53  VPPARFEASKLKVVFSRE-VTKSAGIIPRTYILSHCDFTANLTLTISDVINLDQLRGWYN 111

Query: 121 KDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
           KDDVVAEWKKV+D+MCLHVHCYVSGPS L D+AAEFRYHIF+KE+PL
Sbjct: 112 KDDVVAEWKKVKDEMCLHVHCYVSGPSSLLDVAAEFRYHIFSKELPL 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558494|ref|XP_002520272.1| conserved hypothetical protein [Ricinus communis] gi|223540491|gb|EEF42058.1| conserved hypothetical protein [Ricinus communis]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 126/170 (74%), Gaps = 12/170 (7%)

Query: 1   MACHFAYYYHAFSLTPLRD---LSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAV 57
           MACH A    AFSL+P RD   ++ NNT F    +   ++ S  N S  A++ T VSEAV
Sbjct: 1   MACHSA----AFSLSPCRDYFSINTNNTKFFKRSRPAVVICSITNRS--ANFNTLVSEAV 54

Query: 58  RLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRG 117
           R L PPA FEASKLKVV + + +ND   I+PRTYILSHCDFTA LTLTISNVINL+QLRG
Sbjct: 55  RHLVPPARFEASKLKVVLMEDQIND---IIPRTYILSHCDFTAELTLTISNVINLDQLRG 111

Query: 118 WYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
           WY KDDVVAEWKK+   + LH+HCYVSGP+L  DLAAE RYHIF+KEMPL
Sbjct: 112 WYSKDDVVAEWKKLEGQLALHIHCYVSGPNLALDLAAELRYHIFSKEMPL 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852188|ref|XP_002893975.1| hypothetical protein ARALYDRAFT_891373 [Arabidopsis lyrata subsp. lyrata] gi|297339817|gb|EFH70234.1| hypothetical protein ARALYDRAFT_891373 [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (486), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 125/175 (71%), Gaps = 8/175 (4%)

Query: 1   MACHFAYYYHAFSLT-PLRDLSANNTNFRPSRKYKPLLF----SSINSSSRASYGTFVSE 55
           MAC+   YYH   L+ P R++ ++  + R S K          SS  S    SY T VSE
Sbjct: 1   MACYIVPYYHNPVLSHPNREIISHRHHHRFSNKLLKTRIRVPRSSAISDGGVSYNTLVSE 60

Query: 56  AVRLLGPPASFEASKLKVVFLGEGMNDYSR---ILPRTYILSHCDFTANLTLTISNVINL 112
           AVRLL P A+F++SKLKV FLGE + + S    I PRTYILSHCDFTANLTLTISNVINL
Sbjct: 61  AVRLLVPQANFDSSKLKVEFLGELLENKSSGGIITPRTYILSHCDFTANLTLTISNVINL 120

Query: 113 EQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
           +QL GWY KDDVVAEWKKV D++ LH+HC VSG SLL+D+AAE RYHIF+KE+PL
Sbjct: 121 DQLEGWYKKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPL 175

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778672|gb|AAF79680.1|AC022314_21 F9C16.20 [Arabidopsis thaliana]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/179 (58%), Positives = 124/179 (69%), Gaps = 14/179 (7%)

Query: 1   MACHFAYYYHAFSLT-PLRDLSANN--------TNFRPSRKYKPLLFSSINSSSRASYGT 51
           MAC+   YYH   L+ P R++ ++          N    R   P   SS  S    SY T
Sbjct: 1   MACYIVPYYHHPVLSHPNREIFSHRHHHHHRFCNNLLNRRISVPR--SSAISDGGVSYNT 58

Query: 52  FVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSR---ILPRTYILSHCDFTANLTLTISN 108
            VSEAVRLL P A+F++SKLKV FLGE + + S    I PRTYILSHCDFTANLTLTISN
Sbjct: 59  LVSEAVRLLVPQANFDSSKLKVEFLGELLENKSNGGIITPRTYILSHCDFTANLTLTISN 118

Query: 109 VINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
           VINL+QL GWY KDDVVAEWKKV D++ LH+HC VSG SLL+D+AAE RYHIF+KE+PL
Sbjct: 119 VINLDQLEGWYKKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPL 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2037154	260	AT1G44000 "AT1G44000" [Arabido	0.932	0.638	0.589	7.1e-45
TAIR|locus:2127153	268	NYE1 "AT4G22920" [Arabidopsis	0.859	0.570	0.475	1.5e-28
TAIR|locus:2137020	271	AT4G11910 "AT4G11910" [Arabido	0.797	0.523	0.464	4.5e-27
TAIR|locus:4515103377	273	AT4G11911 "AT4G11911" [Arabido	0.707	0.461	0.507	5.7e-27

TAIR|locus:2037154 AT1G44000 "AT1G44000" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 105/178 (58%), Positives = 125/178 (70%)

Query:     1 MACHFAYYYHAFSLT-PLRDLSANNTNFRPSRKYKPLLF-------SSINSSSRASYGTF 52
             MAC+   YYH   L+ P R++ ++  +    R    LL        SS  S    SY T 
Sbjct:     1 MACYIVPYYHHPVLSHPNREIFSHRHHHH-HRFCNNLLNRRISVPRSSAISDGGVSYNTL 59

Query:    53 VSEAVRLLGPPASFEASKLKVVFLGEGMNDYSR---ILPRTYILSHCDFTANLTLTISNV 109
             VSEAVRLL P A+F++SKLKV FLGE + + S    I PRTYILSHCDFTANLTLTISNV
Sbjct:    60 VSEAVRLLVPQANFDSSKLKVEFLGELLENKSNGGIITPRTYILSHCDFTANLTLTISNV 119

Query:   110 INLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
             INL+QL GWY KDDVVAEWKKV D++ LH+HC VSG SLL+D+AAE RYHIF+KE+PL
Sbjct:   120 INLDQLEGWYKKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPL 177

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2127153 NYE1 "AT4G22920" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 76/160 (47%), Positives = 94/160 (58%)

Query:    11 AFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASK 70
             A  L P +   A +     S     L F+  N  S+    + V  A RL GP A FE+SK
Sbjct:     6 AIMLLPTKLKPAYSDKRSNSSSSSSLFFN--NRRSKKKNQSIVPVA-RLFGP-AIFESSK 61

Query:    71 LKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGW---YIKDDVVAE 127
             LKV+FLG     +   LPRTY L+H D TA LTL IS  IN  QL+GW     +D+VVAE
Sbjct:    62 LKVLFLGVDEKKHPSTLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANRLYRDEVVAE 121

Query:   128 WKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
             WKKV+  M LHVHC++SG   L DL A+FRY IF KE+P+
Sbjct:   122 WKKVKGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPV 161

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2137020 AT4G11910 "AT4G11910" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 71/153 (46%), Positives = 90/153 (58%)

Query:    25 TNFRPSRKYKPLLFSSINSSS-----RASY--GTFVSEAVRLLGPPASFEASKLKVVFLG 77
             TN     K KP+    +++SS     R S      +    RL GP A FEASKLKV+FLG
Sbjct:     6 TNLLLPSKMKPVFPEKLSTSSLCVTTRRSKMKNRSIVPVARLFGP-AIFEASKLKVLFLG 64

Query:    78 EGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGW---YIKDDVVAEWKKVRDD 134
                  +   LPRTY L+H D TA LTL IS  IN  QL+GW     +D+VV EWKKV+  
Sbjct:    65 VDEKKHPAKLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANKLFRDEVVGEWKKVKGK 124

Query:   135 MCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
             M LHVHC++SG     +L A+ RY+IF KE+P+
Sbjct:   125 MSLHVHCHISGGHFFLNLIAKLRYYIFCKELPV 157

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:4515103377 AT4G11911 "AT4G11911" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 67/132 (50%), Positives = 81/132 (61%)

Query:    39 SSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDF 98
             S+  SS R     F     RL G  A FEASKL V FLG     +   LPRTY  +H D 
Sbjct:    29 STTRSSKRKKQSMF--PVARLFGQ-AIFEASKLNVKFLGVDEKKHPPNLPRTYTFTHSDI 85

Query:    99 TANLTLTISNVINLEQLRGW---YIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAE 155
             TA LTL IS+ IN  QL+GW     +D+VVAEW+KV+ +M LHVHC++SG   L DL AE
Sbjct:    86 TAKLTLAISHSINNSQLQGWANRLYRDEVVAEWRKVKSNMSLHVHCHISGDHFLLDLIAE 145

Query:   156 FRYHIFTKEMPL 167
              RY IF KE+P+
Sbjct:   146 LRYFIFCKELPM 157


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       178   0.00086  109 3  11 22  0.36    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.01u 0.13s 16.14t   Elapsed:  00:00:01
  Total cpu time:  16.01u 0.13s 16.14t   Elapsed:  00:00:01
  Start:  Fri May 10 23:31:28 2013   End:  Fri May 10 23:31:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
pfam12638	149	pfam12638, Staygreen, Staygreen protein	8e-46

>gnl|CDD|221681 pfam12638, Staygreen, Staygreen protein

 Score =  147 bits (373), Expect = 8e-46
 Identities = 59/104 (56%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 64  ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDD 123
           A F+ SKL V FLG        I+PR Y L+H D TANLTLTI N  NL+QL     +D+
Sbjct: 1   AKFDPSKLSVEFLGPITETGP-IIPRRYTLTHSDVTANLTLTIGNTYNLDQLNTLL-RDE 58

Query: 124 VVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPL 167
           V+AEWKKV     LHVHCYVSG +L  DLAA+ RY+IF KE+PL
Sbjct: 59  VLAEWKKVNGQYSLHVHCYVSGGNLDLDLAAK-RYYIFRKELPL 101

This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PF12638	151	Staygreen: Staygreen protein; InterPro: IPR024438	100.0

>PF12638 Staygreen: Staygreen protein; InterPro: IPR024438 This domain is found in a family of proteins have been implicated in chlorophyll degradation [, ]

Probab=100.00  E-value=5.3e-52  Score=335.00  Aligned_cols=107  Identities=49%  Similarity=0.796  Sum_probs=102.3

Q ss_pred             CCCCCCCcEEEeecCCCCCCCCCCCceeeeccCCcCcceEEEEehhhhhhhhccccccceEEEEEEecCCeeEEEEEEEE
Q 030399           64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYV  143 (178)
Q Consensus        64 ~~Fnp~KLsV~f~g~~~t~~~PiipRrYTLTHsD~T~~LfLtIg~~fn~dqL~~w~~RDEVlAEW~~~~g~~~LhVyc~V  143 (178)
                      ++|||+||+|+|+ .+++++.|++||||||||||+||+|||+||.+||+|||.+|++||||||||++++|+|+|||||||
T Consensus         1 ~~F~p~KL~V~f~-~~~t~~~P~~pR~YTLTHsD~T~~L~L~Ig~~~~~d~l~~~~~RDEVlaEW~~~~~~~~L~v~~~V   79 (151)
T PF12638_consen    1 MKFNPSKLSVEFR-GGITPTHPIIPRRYTLTHSDFTGELFLTIGNEFNYDQLYNRLMRDEVLAEWKKVNGQYSLHVYCYV   79 (151)
T ss_pred             CCCChHHeEEEec-CCCCcCCCCCCceEEeecCCccCceEEEeeHHhhHHHhhccchhceEEEEEEEcCCEEEEEEEEEE
Confidence            3899999999999 889999999999999999999999999999999999994458999999999999999999999999


Q ss_pred             eCCCcchhhHHHHHHHHHHhhccccccc
Q 030399          144 SGPSLLRDLAAEFRYHIFTKEMPLGSHV  171 (178)
Q Consensus       144 sG~~~~~~~~A~~Ry~IF~kELPLaL~a  171 (178)
                      ||+|++++++|++||+||+|||||||+|
T Consensus        80 ~g~~~~~~~aa~~Ry~IF~kELPl~L~A  107 (151)
T PF12638_consen   80 SGGHFDKDLAARLRYYIFRKELPLALKA  107 (151)
T ss_pred             CCCccChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987788999999999999997

Intriguingly members of this family are also found in non-photosynthetic bacteria.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00