Citrus Sinensis ID: 030400

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18

MAKIGGSLLVPCVQELVKNPMLVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKRAN

ccccccccccHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccEEEEEcccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHcc

ccccccccccHHHHHHHHcccccccHHcccccccccccccccccccccEEEHHcccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEcEEEEEEcccccccHHHHHHHHccccHcccccccccccccHHHHHHHHHHHHHHHHcc

makiggsllvpcvqelvknpmlvvppryirpdqdspinsddtlisqipvidmqsllseesMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKywqhpgdvegfGQAFVVseeqkldwadifsmitlpvhlrkphlfpklppllrFSLFVLDMdlqtkran

makiggsllvpCVQELVKNPMLVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKRAN

MAKIGGSLLVPCVQELVKNPMLVVPPRYIRPDQDSPINSDDTLISQIPVIDMQsllseesmdselAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVhlrkphlfpklppllrfSLFVLDMDLQTKRAN

*****GSLLVPCVQELVKNPMLVVPPRYI*************LISQIPVIDM***********ELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMD*******

*****GSLLVPCVQELVKNPMLVVPPRYIRPDQD*********ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTK***

MAKIGGSLLVPCVQELVKNPMLVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKRAN

**********************VVPPR****DQDSPINSDDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKRA*

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MAKIGGSLLVPCVQELVKNPMLVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKRAN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		178	2.2.26 [Sep-21-2011]
Q39224		358	Protein SRG1 OS=Arabidops	yes	no	0.949	0.472	0.602	4e-55
D4N500		364	Thebaine 6-O-demethylase	N/A	no	0.904	0.442	0.534	3e-46
D4N501		364	Probable 2-oxoglutarate/F	N/A	no	0.926	0.453	0.517	2e-44
D4N502		360	Codeine O-demethylase OS=	N/A	no	0.921	0.455	0.511	2e-43
A2A1A0		352	S-norcoclaurine synthase	N/A	no	0.960	0.485	0.445	6e-35
Q96323		356	Leucoanthocyanidin dioxyg	no	no	0.837	0.418	0.314	5e-17
P51092		430	Leucoanthocyanidin dioxyg	N/A	no	0.808	0.334	0.305	3e-15
P51093		362	Leucoanthocyanidin dioxyg	no	no	0.831	0.408	0.301	4e-15
P51091		357	Leucoanthocyanidin dioxyg	N/A	no	0.814	0.406	0.305	5e-15
O04274		362	Leucoanthocyanidin dioxyg	N/A	no	0.837	0.411	0.287	7e-15

>sp\|Q39224\|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1	Back alignment and function desciption

 Score =  214 bits (544), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/171 (60%), Positives = 131/171 (76%), Gaps = 2/171 (1%)

Query: 6   GSLLVPCVQELVKNPMLV-VPPRYIRPDQD-SPINSDDTLISQIPVIDMQSLLSEESMDS 63
            S+LVP VQE+VK   +  VPPRY+R DQD + ++ D  +  +IP+IDM+ L S  +MDS
Sbjct: 10  SSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDS 69

Query: 64  ELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQ 123
           E+ KLDFACKEWGFFQLVNHG+ S+FL+K+K E+Q FFNL MEEKKK+WQ P ++EGFGQ
Sbjct: 70  EVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQ 129

Query: 124 AFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQT 174
           AFVVSE+QKLDWAD+F     PV LRKPHLFPKLP   R +L +   ++Q+
Sbjct: 130 AFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQS 180

Arabidopsis thaliana (taxid: 3702)

>sp\|D4N500\|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1	Back alignment and function description

>sp\|D4N501\|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1	Back alignment and function description

>sp\|D4N502\|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1	Back alignment and function description

>sp\|A2A1A0\|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1	Back alignment and function description

>sp\|Q96323\|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1	Back alignment and function description

>sp\|P51092\|LDOX_PETHY Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1	Back alignment and function description

>sp\|P51093\|LDOX_VITVI Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1	Back alignment and function description

>sp\|P51091\|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1	Back alignment and function description

>sp\|O04274\|LDOX_PERFR Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		178
224061381		359	predicted protein [Populus trichocarpa]	0.921	0.456	0.652	3e-59
225463356		354	PREDICTED: protein SRG1 [Vitis vinifera]	0.977	0.491	0.655	6e-59
224061385		355	predicted protein [Populus trichocarpa]	0.977	0.490	0.628	8e-59
297740621		181	unnamed protein product [Vitis vinifera]	0.938	0.922	0.680	2e-58
255575141		364	Leucoanthocyanidin dioxygenase, putative	0.859	0.420	0.702	3e-58
225462507		366	PREDICTED: protein SRG1 [Vitis vinifera]	0.977	0.475	0.615	5e-58
359483589		361	PREDICTED: LOW QUALITY PROTEIN: protein	0.971	0.479	0.621	3e-56
224061027		362	predicted protein [Populus trichocarpa]	0.971	0.477	0.622	1e-55
225453297		364	PREDICTED: protein SRG1 [Vitis vinifera]	0.926	0.453	0.632	3e-55
297803592		356	oxidoreductase [Arabidopsis lyrata subsp	0.893	0.446	0.670	2e-54

>gi\|224061381\|ref\|XP_002300451.1\| predicted protein [Populus trichocarpa] gi\|222847709\|gb\|EEE85256.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/164 (65%), Positives = 134/164 (81%)

Query: 2   AKIGGSLLVPCVQELVKNPMLVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEESM 61
           + +G SLLVPCVQEL K+ ++ VPPRYIR DQ+ PI +    +S++PVIDMQ LL +E+M
Sbjct: 6   SSLGSSLLVPCVQELAKDLLVAVPPRYIRYDQEHPIIASHDPVSEVPVIDMQRLLDQETM 65

Query: 62  DSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGF 121
           DSEL +L FACK WGFFQLVNH VSS+ L+K+K ++Q FFNL MEEKK++WQ+PG++EGF
Sbjct: 66  DSELGRLHFACKTWGFFQLVNHCVSSSLLDKMKTQLQDFFNLPMEEKKRFWQYPGEIEGF 125

Query: 122 GQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSL 165
           GQAFVVSEEQKLDW D+F M+T P +LRKPHLFPKLP   R +L
Sbjct: 126 GQAFVVSEEQKLDWGDLFFMVTQPANLRKPHLFPKLPLPFRDTL 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225463356\|ref\|XP_002271080.1\| PREDICTED: protein SRG1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224061385\|ref\|XP_002300453.1\| predicted protein [Populus trichocarpa] gi\|222847711\|gb\|EEE85258.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297740621\|emb\|CBI30803.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255575141\|ref\|XP_002528475.1\| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi\|223532084\|gb\|EEF33892.1\| Leucoanthocyanidin dioxygenase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225462507\|ref\|XP_002269087.1\| PREDICTED: protein SRG1 [Vitis vinifera] gi\|297740615\|emb\|CBI30797.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359483589\|ref\|XP_003632983.1\| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224061027\|ref\|XP_002300322.1\| predicted protein [Populus trichocarpa] gi\|222847580\|gb\|EEE85127.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225453297\|ref\|XP_002268288.1\| PREDICTED: protein SRG1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297803592\|ref\|XP_002869680.1\| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi\|297315516\|gb\|EFH45939.1\| oxidoreductase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		178
TAIR\|locus:2020407		358	SRG1 "senescence-related gene	0.786	0.391	0.591	4e-42
TAIR\|locus:2020422		361	AT1G17010 [Arabidopsis thalian	0.786	0.387	0.601	8.4e-42
TAIR\|locus:2122669		356	AT4G25300 [Arabidopsis thalian	0.786	0.393	0.598	4.6e-41
TAIR\|locus:2122679		353	AT4G25310 [Arabidopsis thalian	0.769	0.388	0.570	1.8e-39
TAIR\|locus:2202980		356	AT1G78550 [Arabidopsis thalian	0.786	0.393	0.549	1.1e-37
TAIR\|locus:2089428		364	LBO1 "LATERAL BRANCHING OXIDOR	0.724	0.354	0.414	1.4e-23
TAIR\|locus:2042942		353	AT2G38240 [Arabidopsis thalian	0.730	0.368	0.370	1.7e-19
TAIR\|locus:2169697		371	AT5G05600 [Arabidopsis thalian	0.747	0.358	0.308	1.8e-16
TAIR\|locus:2127218		356	LDOX "leucoanthocyanidin dioxy	0.747	0.373	0.300	5.8e-14
TAIR\|locus:2010242		348	AT1G49390 [Arabidopsis thalian	0.735	0.376	0.333	6.9e-14

TAIR\|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 84/142 (59%), Positives = 102/142 (71%)

Query:     7 SLLVPCVQELVKNPMLV-VPPRYIRPDQDSPINSDDTLIS-QIPVIDMQXXXXXXXXXXX 64
             S+LVP VQE+VK   +  VPPRY+R DQD     DD  +  +IP+IDM+           
Sbjct:    11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSE 70

Query:    65 XAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQA 124
               KLDFACKEWGFFQLVNHG+ S+FL+K+K E+Q FFNL MEEKKK+WQ P ++EGFGQA
Sbjct:    71 VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQA 130

Query:   125 FVVSEEQKLDWADIFSMITLPV 146
             FVVSE+QKLDWAD+F     PV
Sbjct:   131 FVVSEDQKLDWADLFFHTVQPV 152

GO:0005737 "cytoplasm" evidence=ISM

GO:0009813 "flavonoid biosynthetic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010260 "organ senescence" evidence=IEP;RCA

GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS

TAIR\|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2127218 LDOX "leucoanthocyanidin dioxygenase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		178
PLN02216		357	PLN02216, PLN02216, protein SRG1	1e-81
PLN02758		361	PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy	4e-44
PLN02393		362	PLN02393, PLN02393, leucoanthocyanidin dioxygenase	1e-36
pfam14226		113	pfam14226, DIOX_N, non-haem dioxygenase in morphin	2e-32
PLN03178		360	PLN03178, PLN03178, leucoanthocyanidin dioxygenase	3e-28
PLN00417		348	PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy	2e-23
PLN02704		335	PLN02704, PLN02704, flavonol synthase	1e-18
PLN02947		374	PLN02947, PLN02947, oxidoreductase	7e-18
PLN02276		361	PLN02276, PLN02276, gibberellin 20-oxidase	2e-17
PLN02639		337	PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy	2e-16
PLN02750		345	PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy	5e-14
PLN02254		358	PLN02254, PLN02254, gibberellin 3-beta-dioxygenase	1e-13
PLN02912		348	PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy	4e-13
PLN02515		358	PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di	4e-13
PLN02299		321	PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl	2e-12
PLN02904		357	PLN02904, PLN02904, oxidoreductase	3e-12
COG3491		322	COG3491, PcbC, Isopenicillin N synthase and relate	2e-11
PLN02984		341	PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy	1e-10
PLN02403		303	PLN02403, PLN02403, aminocyclopropanecarboxylate o	3e-10
PLN02365		300	PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy	8e-10
PTZ00273		320	PTZ00273, PTZ00273, oxidase reductase; Provisional	2e-09
PLN03176		120	PLN03176, PLN03176, flavanone-3-hydroxylase; Provi	5e-09
PLN02485		329	PLN02485, PLN02485, oxidoreductase	3e-08
PLN02156		335	PLN02156, PLN02156, gibberellin 2-beta-dioxygenase	1e-06
PLN02997		325	PLN02997, PLN02997, flavonol synthase	1e-06
PLN03002		332	PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy	7e-05
PLN03001		262	PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy	2e-04

>gnl\|CDD\|215129 PLN02216, PLN02216, protein SRG1	Back alignment and domain information

 Score =  245 bits (626), Expect = 1e-81
 Identities = 106/161 (65%), Positives = 128/161 (79%), Gaps = 2/161 (1%)

Query: 7   SLLVPCVQELVKNPMLV-VPPRYIRPDQD-SPINSDDTLISQIPVIDMQSLLSEESMDSE 64
           S++VP VQE+VK  M+  VPPRY+R DQD + I  D  L S+IP+IDM+ L S  +MDSE
Sbjct: 11  SIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSE 70

Query: 65  LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQA 124
           + KLDFACKEWGFFQLVNHG+ S+FL+K+K E+Q FFNL MEEKKK WQ PG++EGFGQA
Sbjct: 71  VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA 130

Query: 125 FVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSL 165
           FVVSE+QKLDWAD+F +   PV LRKPHLFPKLP   R +L
Sbjct: 131 FVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTL 171

Length = 357

>gnl\|CDD\|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein	Back alignment and domain information

>gnl\|CDD\|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal	Back alignment and domain information

>gnl\|CDD\|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>gnl\|CDD\|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|166345 PLN02704, PLN02704, flavonol synthase	Back alignment and domain information

>gnl\|CDD\|215510 PLN02947, PLN02947, oxidoreductase	Back alignment and domain information

>gnl\|CDD\|215156 PLN02276, PLN02276, gibberellin 20-oxidase	Back alignment and domain information

>gnl\|CDD\|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase	Back alignment and domain information

>gnl\|CDD\|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>gnl\|CDD\|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>gnl\|CDD\|178492 PLN02904, PLN02904, oxidoreductase	Back alignment and domain information

>gnl\|CDD\|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase	Back alignment and domain information

>gnl\|CDD\|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>gnl\|CDD\|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional	Back alignment and domain information

>gnl\|CDD\|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|215267 PLN02485, PLN02485, oxidoreductase	Back alignment and domain information

>gnl\|CDD\|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase	Back alignment and domain information

>gnl\|CDD\|178576 PLN02997, PLN02997, flavonol synthase	Back alignment and domain information

>gnl\|CDD\|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		178
PLN02216		357	protein SRG1	100.0
PLN02758		361	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02393		362	leucoanthocyanidin dioxygenase like protein	100.0
PLN03178		360	leucoanthocyanidin dioxygenase; Provisional	100.0
PLN02947		374	oxidoreductase	100.0
PLN02904		357	oxidoreductase	100.0
PLN00417		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02515		358	naringenin,2-oxoglutarate 3-dioxygenase	100.0
PLN02254		358	gibberellin 3-beta-dioxygenase	100.0
PLN02912		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	99.98
PLN02276		361	gibberellin 20-oxidase	99.98
PLN02704		335	flavonol synthase	99.98
PLN02750		345	oxidoreductase, 2OG-Fe(II) oxygenase family protei	99.97
PLN02639		337	oxidoreductase, 2OG-Fe(II) oxygenase family protei	99.97
KOG0143		322	consensus Iron/ascorbate family oxidoreductases [S	99.96
PF14226		116	DIOX_N: non-haem dioxygenase in morphine synthesis	99.96
PLN02485		329	oxidoreductase	99.96
PTZ00273		320	oxidase reductase; Provisional	99.96
COG3491		322	PcbC Isopenicillin N synthase and related dioxygen	99.96
PLN02997		325	flavonol synthase	99.95
PLN02299		321	1-aminocyclopropane-1-carboxylate oxidase	99.95
PLN03002		332	oxidoreductase, 2OG-Fe(II) oxygenase family protei	99.95
PLN02156		335	gibberellin 2-beta-dioxygenase	99.94
PLN02403		303	aminocyclopropanecarboxylate oxidase	99.94
PLN03176		120	flavanone-3-hydroxylase; Provisional	99.94
PLN02365		300	2-oxoglutarate-dependent dioxygenase	99.91
PLN02984		341	oxidoreductase, 2OG-Fe(II) oxygenase family protei	99.91
PLN03001		262	oxidoreductase, 2OG-Fe(II) oxygenase family protei	99.35
PF07350		416	DUF1479: Protein of unknown function (DUF1479); In	89.12

>PLN02216 protein SRG1	Back alignment and domain information

Probab=100.00  E-value=4.4e-36  Score=250.24  Aligned_cols=167  Identities=62%  Similarity=1.051  Sum_probs=138.8

Q ss_pred             chhHHHHHhC-CCCCCCCCccCCCCCCCCCC-CCCCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCH
Q 030400           10 VPCVQELVKN-PMLVVPPRYIRPDQDSPINS-DDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSS   87 (178)
Q Consensus        10 ~~~~~~l~~~-~~~~~p~~~v~p~~~~~~~~-~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~   87 (178)
                      ++.|+.|+.+ ++..||+.|++|.++++.+. .......||||||+.+.+++.+++++++|++||++||||||+||||+.
T Consensus        14 ~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~   93 (357)
T PLN02216         14 VPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDS   93 (357)
T ss_pred             chhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCH
Confidence            4668999876 78999999999999987531 111225799999999876554456889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHH
Q 030400           88 AFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFV  167 (178)
Q Consensus        88 ~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~  167 (178)
                      ++++++++++++||+||.|+|+++...++..+||+........+..||+|.|++...|.....+|.||+.+++||+++++
T Consensus        94 ~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~  173 (357)
T PLN02216         94 SFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLET  173 (357)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHH
Confidence            99999999999999999999999976555678997654433455679999998876665556789999988999999999


Q ss_pred             HHHHHhhhh
Q 030400          168 LDMDLQTKR  176 (178)
Q Consensus       168 y~~~~~~~~  176 (178)
                      |+.+|.+|.
T Consensus       174 y~~~~~~l~  182 (357)
T PLN02216        174 YSAEVKSIA  182 (357)
T ss_pred             HHHHHHHHH
Confidence            999999875

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02393 leucoanthocyanidin dioxygenase like protein	Back alignment and domain information

>PLN03178 leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>PLN02947 oxidoreductase	Back alignment and domain information

>PLN02904 oxidoreductase	Back alignment and domain information

>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>PLN02254 gibberellin 3-beta-dioxygenase	Back alignment and domain information

>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02276 gibberellin 20-oxidase	Back alignment and domain information

>PLN02704 flavonol synthase	Back alignment and domain information

>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]	Back alignment and domain information

>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A	Back alignment and domain information

>PLN02485 oxidoreductase	Back alignment and domain information

>PTZ00273 oxidase reductase; Provisional	Back alignment and domain information

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

>PLN02997 flavonol synthase	Back alignment and domain information

>PLN02299 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02156 gibberellin 2-beta-dioxygenase	Back alignment and domain information

>PLN02403 aminocyclopropanecarboxylate oxidase	Back alignment and domain information

>PLN03176 flavanone-3-hydroxylase; Provisional	Back alignment and domain information

>PLN02365 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		178
1gp5_A		356	Anthocyanidin Synthase From Arabidopsis Thaliana Co		3e-14
2brt_A		355	Anthocyanidin Synthase From Arabidopsis Thaliana Co		4e-14
1gp4_A		356	Anthocyanidin Synthase From Arabidopsis Thaliana (S		1e-13
1w9y_A		319	The Structure Of Acc Oxidase Length = 319		5e-06

>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356

Back alignment and structure

Iteration: 1

Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 13 VQELVKNPMLVVPPRYIRPDQDSPINSDDTLIS------QIPVIDMQXXXXXXXXXXXXA 66 V+ L K+ ++ +P YIRP ++ +D L Q+P ID++ Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66 Query: 67 --KLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYW--QHPGDVEGFG 122 +L A +WG L+NHG+ + +E++KK + FF+LS+EEK+KY Q G ++G+G Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126 Query: 123 QAFVVSEEQKLDWADIFSMITLP 145 + +L+W D F + P Sbjct: 127 SKLANNASGQLEWEDYFFHLAYP 149

PyMOL of 1gp5

>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355

Back alignment and structure

>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356

Back alignment and structure

>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		178
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	1e-61
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	5e-45
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	9e-26
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	3e-20
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	3e-20
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	7e-17

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356	Back alignment and structure

 Score =  193 bits (493), Expect = 1e-61
 Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)

Query: 8   LLVPCVQELVKNPMLVVPPRYIRPDQDSPINSDDTLIS------QIPVIDMQSLLSEESM 61
           + V  V+ L K+ ++ +P  YIRP ++    +D  L        Q+P ID++++ S++  
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 62  DSE--LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYW--QHPGD 117
             E  + +L  A  +WG   L+NHG+ +  +E++KK  + FF+LS+EEK+KY   Q  G 
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121

Query: 118 VEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLR 162
           ++G+G     +   +L+W D F  +  P   R   ++PK P    
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166

PyMOL of 1gp6

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280	Back alignment and structure

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		178
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	100.0
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	99.96
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	99.96
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	99.95
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	99.95
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	99.94
2dbn_A		461	Hypothetical protein YBIU; alpha/beta structure, s	83.79

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*	Back alignment and structure

Probab=100.00  E-value=1.2e-36  Score=252.73  Aligned_cols=167  Identities=29%  Similarity=0.554  Sum_probs=139.1

Q ss_pred             chhHHHHHhCCCCCCCCCccCCCCCCCCCCC---CC---CCCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEEe
Q 030400           10 VPCVQELVKNPMLVVPPRYIRPDQDSPINSD---DT---LISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQLV   81 (178)
Q Consensus        10 ~~~~~~l~~~~~~~~p~~~v~p~~~~~~~~~---~~---~~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l~   81 (178)
                      +++||+|+++|+..||++|++|.++++....   ..   ...+||||||+.+.+++.  +.+++++|++||++||||||+
T Consensus         4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~   83 (356)
T 1gp6_A            4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   83 (356)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence            5679999999999999999999888765321   00   124699999999875543  345789999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCC--CCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCcc
Q 030400           82 NHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHP--GDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPP  159 (178)
Q Consensus        82 nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~  159 (178)
                      ||||+.++++++++++++||+||.|+|+++....  ..++||+........+..||+|+|+++..|.....+|.||+.++
T Consensus        84 nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~  163 (356)
T 1gp6_A           84 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  163 (356)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcch
Confidence            9999999999999999999999999999997653  36789987654444567899999999876643356899999999


Q ss_pred             chHHHHHHHHHHHhhhh
Q 030400          160 LLRFSLFVLDMDLQTKR  176 (178)
Q Consensus       160 ~fr~~~~~y~~~~~~~~  176 (178)
                      +||+++++|+++|.++.
T Consensus       164 ~fr~~~~~y~~~~~~l~  180 (356)
T 1gp6_A          164 DYIEATSEYAKCLRLLA  180 (356)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            99999999999999874

PyMOL of 1gp6

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}	Back alignment and structure

>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		178
d1gp6a_		349	b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr	1e-29
d1w9ya1		307	b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla	2e-21
d1dcsa_		311	b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S	2e-21
d1odma_		329	b.82.2.1 (A:) Isopenicillin N synthase {Emericella	2e-16

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (272), Expect = 1e-29
 Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 10/162 (6%)

Query: 8   LLVPCVQELVKNPMLVVPPRYIRPDQDSPINSDDTLIS------QIPVIDMQSLLSEESM 61
           + V  V+ L K+ ++ +P  YIRP ++    +D  L        Q+P ID++++ S++  
Sbjct: 1   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60

Query: 62  DSE--LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYW--QHPGD 117
             E  + +L  A  +WG   L+NHG+ +  +E++KK  + FF+LS+EEK+KY   Q  G 
Sbjct: 61  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120

Query: 118 VEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPP 159
           ++G+G     +   +L+W D F  +  P   R   ++PK P 
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 162

PyMOL of d1gp6a_

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		178
d1gp6a_		349	Anthocyanidin synthase {Mouse-ear cress (Arabidops	100.0
d1w9ya1		307	1-aminocyclopropane-1-carboxylate oxidase 1 {Petun	99.94
d1dcsa_		311	Deacetoxycephalosporin C synthase {Streptomyces cl	99.91
d1odma_		329	Isopenicillin N synthase {Emericella nidulans [Tax	99.89
d2csga1		417	Hypothetical protein YbiU {Salmonella typhimurium	83.27

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.3e-35  Score=238.58  Aligned_cols=167  Identities=28%  Similarity=0.541  Sum_probs=134.9

Q ss_pred             chhHHHHHhCCCCCCCCCccCCCCCCCCCC------CCCCCCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEEe
Q 030400           10 VPCVQELVKNPMLVVPPRYIRPDQDSPINS------DDTLISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQLV   81 (178)
Q Consensus        10 ~~~~~~l~~~~~~~~p~~~v~p~~~~~~~~------~~~~~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l~   81 (178)
                      +-.|+.|+++|+..||++||||+.+++.+.      ...+..+||||||+.|.+++.  +++++++|++||+++|||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            456999999999999999999999988652      234567899999999987664  345889999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCC--CCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCcc
Q 030400           82 NHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHP--GDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPP  159 (178)
Q Consensus        82 nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~  159 (178)
                      ||||+.++++++++++++||+||.|+|+++....  +.+.||+...........+|.+.+.....+.....+|.||+.++
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            9999999999999999999999999999997542  33445554433334456677776554444444567899999999


Q ss_pred             chHHHHHHHHHHHhhhh
Q 030400          160 LLRFSLFVLDMDLQTKR  176 (178)
Q Consensus       160 ~fr~~~~~y~~~~~~~~  176 (178)
                      +|++.+++|+++|.++.
T Consensus       163 ~f~e~~~~~~~~~~~la  179 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLA  179 (349)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            99999999999998774

PyMOL of d1gp6a_

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]}	Back information, alignment and structure

>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure