Citrus Sinensis ID: 030417

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYLSFH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccHHHHHHHHcccccccEEEEEEccccEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHccccccccccccEEEEcccccccccccccHHEEEEcccHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHEEEEEEcccccHcccHHHEEEEcccccccccEEEEEcccccccEEEEEEEEcccccEEccc
Coil and Loop (DISEMBL)
MAAMNSSVLACNYAisgsagsselnAKIVSvstpavhghkmpviRAQQvdvskesrgtdGRRAAMALLAVTLFTTATAaasssanagvideYLERSKANKELNDQKRLATSGANFARAYTvqfgtckkchssrmiwnwsakgkintsvvpmfsgngevgqLISLnilfyppmylsfh
Flexible Loop (DISEMBL)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTpavhghkmpviraqqvdvskesrgtDGRRAAMALLAVTLFTTATaaasssanagVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYLSFH
Low Complexity Region (SEG)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRaamallavtlfttataaasssanaGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYLSFH
Disordered region (IsUnstruct)
********LACNYAI************IVSV*******************************AAMALLAVTLFTTATAAA******GVIDEY******************SGANFARAYTVQFGTCKKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYL***
Disordered Region (DISOPRED)
*****SS*LACNYAISGSAGSSE******************************************ALLAVTLFTTATAAASSSANAGVIDE*******************SGANFARAYTVQFGTCKKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYLSF*
Disordered Region (DISEMBL)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQ***********GRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYLSFH
Disordered Region (DISPRO)
*****S*VLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYLSFH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYLSFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
P49107	171	Photosystem I reaction ce	no	no	0.694	0.719	0.671	4e-39
O65107	112	Photosystem I reaction ce	N/A	no	0.265	0.419	0.765	6e-15
P31093	145	Photosystem I reaction ce	N/A	no	0.350	0.427	0.709	6e-14
Q9SBN5	139	Photosystem I reaction ce	N/A	no	0.225	0.287	0.575	7e-05

>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2

 Score =  160 bits (405), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 104/131 (79%), Gaps = 8/131 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK NKELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query: 117 RAYTVQFGTCK 127
           RA+TVQFG+CK
Sbjct: 117 RAFTVQFGSCK 127

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna. Plays an important role in docking plastocyanin to the PSI complex. Does not bind pigments.
Arabidopsis thaliana (taxid: 3702)

>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/47 (76%), Positives = 43/47 (91%)

Query: 81  SSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCK 127
           + SA A + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+
Sbjct: 22  TGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQ 68

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Zea mays (taxid: 4577)

>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1

 Score = 77.0 bits (188), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 50/62 (80%)

Query: 66  ALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGT 125
           ALL +     ATAA++ SA A V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+
Sbjct: 40  ALLGLAAVFAATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGS 99

Query: 126 CK 127
           CK
Sbjct: 100 CK 101

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Hordeum vulgare (taxid: 4513)

>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1

 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 88  VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCK 127
           V+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+
Sbjct: 55  VVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQ 94

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Volvox carteri (taxid: 3067)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
186532722	181	photosystem I reaction center subunit N	0.864	0.845	0.611	2e-46
224093408	172	predicted protein [Populus trichocarpa]	0.700	0.720	0.725	1e-38
118488894	172	unknown [Populus trichocarpa x Populus d	0.700	0.720	0.725	2e-38
297797407	171	photosystem I reaction center subunit ps	0.694	0.719	0.679	6e-38
357464531	172	Photosystem I reaction center subunit N	0.694	0.715	0.734	7e-38
15237593	171	photosystem I reaction center subunit N	0.694	0.719	0.671	2e-37
224080971	172	predicted protein [Populus trichocarpa]	0.700	0.720	0.717	3e-36
449461859	171	PREDICTED: photosystem I reaction center	0.700	0.725	0.669	3e-35
449507490	171	PREDICTED: photosystem I reaction center	0.700	0.725	0.669	4e-35
255571379	169	Photosystem I reaction center subunit N,	0.694	0.727	0.697	6e-35

>gi|186532722|ref|NP_001032133.2| photosystem I reaction center subunit N [Arabidopsis thaliana] gi|332010450|gb|AED97833.1| photosystem I reaction center subunit N [Arabidopsis thaliana]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/175 (61%), Positives = 127/175 (72%), Gaps = 22/175 (12%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK NKELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query: 117 RAYTVQFGTCK--------------KCHSSRMIWNWSAKGKINTSVVPMFSGNGE 157
           RA+TVQFG+CK              K H S+ I  W+AK + +TSVVPMFSGNGE
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKFHLSQKILLWNAKARTSTSVVPMFSGNGE 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093408|ref|XP_002309915.1| predicted protein [Populus trichocarpa] gi|222852818|gb|EEE90365.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 111/131 (84%), Gaps = 7/131 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++  V G K+PVIRAQQ    S+E +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASLVVSGPKLPVIRAQQTRADSREMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
            ++GRRAAM  LA TLFT+A AA+S++A  GVI+EYLE+SKANKELND+KRLATSGANFA
Sbjct: 60  ASEGRRAAMVYLAATLFTSAAAASSANA--GVIEEYLEKSKANKELNDKKRLATSGANFA 117

Query: 117 RAYTVQFGTCK 127
           RA+TVQFGTCK
Sbjct: 118 RAFTVQFGTCK 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488894|gb|ABK96256.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489284|gb|ABK96447.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 111/131 (84%), Gaps = 7/131 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++  V G K+PVIRAQQ    S+E +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASLVVCGPKLPVIRAQQTRADSREMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
            ++GRRAAM  LA TLFT+A AA+S++A  GVI+EYLE+SKANKELND+KRLATSGANFA
Sbjct: 60  ASEGRRAAMVYLAATLFTSAAAASSANA--GVIEEYLEKSKANKELNDKKRLATSGANFA 117

Query: 117 RAYTVQFGTCK 127
           RA+TVQFGTCK
Sbjct: 118 RAFTVQFGTCK 128

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797407|ref|XP_002866588.1| photosystem I reaction center subunit psi-N [Arabidopsis lyrata subsp. lyrata] gi|297312423|gb|EFH42847.1| photosystem I reaction center subunit psi-N [Arabidopsis lyrata subsp. lyrata]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 105/131 (80%), Gaps = 8/131 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSKANKELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKANKELNDKKRLATSGANFA 116

Query: 117 RAYTVQFGTCK 127
           RA+TVQFG+CK
Sbjct: 117 RAFTVQFGSCK 127

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464531|ref|XP_003602547.1| Photosystem I reaction center subunit N [Medicago truncatula] gi|355491595|gb|AES72798.1| Photosystem I reaction center subunit N [Medicago truncatula] gi|388492560|gb|AFK34346.1| unknown [Medicago truncatula]

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 115/132 (87%), Gaps = 9/132 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSV---STPAVHGHKMPVIRAQQVDV--SKES 55
           MAAMNSSVLAC+YAISGS    ELNAK++SV   ++P V G K+P+I+AQQV +  +KES
Sbjct: 1   MAAMNSSVLACSYAISGS----ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKES 56

Query: 56  RGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANF 115
           R +DGRR A+ALLA TLFTTA +A++SSANAGVI+EYLE+SKANKELND+KRLATSGANF
Sbjct: 57  RASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANF 116

Query: 116 ARAYTVQFGTCK 127
           ARAYTVQFGTCK
Sbjct: 117 ARAYTVQFGTCK 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237593|ref|NP_201209.1| photosystem I reaction center subunit N [Arabidopsis thaliana] gi|1709825|sp|P49107.2|PSAN_ARATH RecName: Full=Photosystem I reaction center subunit N, chloroplastic; Short=PSI-N; Flags: Precursor gi|1237124|gb|AAA93075.1| PSI-N [Arabidopsis thaliana] gi|10176952|dbj|BAB10272.1| photosystem I reaction centre subunit psaN precursor [Arabidopsis thaliana] gi|17065518|gb|AAL32913.1| photosystem I reaction centre subunit psaN precursor [Arabidopsis thaliana] gi|20148531|gb|AAM10156.1| photosystem I reaction center subunit psaN precursor [Arabidopsis thaliana] gi|332010449|gb|AED97832.1| photosystem I reaction center subunit N [Arabidopsis thaliana]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 104/131 (79%), Gaps = 8/131 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK NKELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query: 117 RAYTVQFGTCK 127
           RA+TVQFG+CK
Sbjct: 117 RAFTVQFGSCK 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080971|ref|XP_002306249.1| predicted protein [Populus trichocarpa] gi|118486634|gb|ABK95154.1| unknown [Populus trichocarpa] gi|222855698|gb|EEE93245.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 110/131 (83%), Gaps = 7/131 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++P V G K+P+IRAQQ    SKE +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASPVVSGPKLPIIRAQQARADSKEMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
            ++GRRAA+  LA T     +AAA++SANAGVI++YLE+SKANKELND+KRLATSGANFA
Sbjct: 60  ASEGRRAALVYLAAT--LFTSAAAAASANAGVIEDYLEKSKANKELNDKKRLATSGANFA 117

Query: 117 RAYTVQFGTCK 127
           RAYTVQFGTCK
Sbjct: 118 RAYTVQFGTCK 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461859|ref|XP_004148659.1| PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Cucumis sativus]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 105/130 (80%), Gaps = 6/130 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIV---SVSTPAVHGHKMPVIRAQQVDVSKESRG 57
           MA MNSSVLACNYAISG AGS++LN+K+    SV++P V G+K+P IRAQQ  V +    
Sbjct: 1   MATMNSSVLACNYAISG-AGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK-- 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117
            DGRR A+  L  +LF  A AA++SSANAGVI++YLE+SKANKELND+KRLATSGANFAR
Sbjct: 58  NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 117

Query: 118 AYTVQFGTCK 127
           AYTV+FGTCK
Sbjct: 118 AYTVEFGTCK 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507490|ref|XP_004163047.1| PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Cucumis sativus]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 105/130 (80%), Gaps = 6/130 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIV---SVSTPAVHGHKMPVIRAQQVDVSKESRG 57
           MA MNSSVLACNYAISG AGS++LN+K+    SV++P V G+K+P IRAQQ  V +    
Sbjct: 1   MATMNSSVLACNYAISG-AGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAK-- 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117
            DGRR A+  L  +LF  A AA++SSANAGVI++YLE+SKANKELND+KRLATSGANFAR
Sbjct: 58  NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 117

Query: 118 AYTVQFGTCK 127
           AYTV+FGTCK
Sbjct: 118 AYTVEFGTCK 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571379|ref|XP_002526638.1| Photosystem I reaction center subunit N, chloroplast precursor, putative [Ricinus communis] gi|223534030|gb|EEF35750.1| Photosystem I reaction center subunit N, chloroplast precursor, putative [Ricinus communis]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/129 (69%), Positives = 102/129 (79%), Gaps = 6/129 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELN--AKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGT 58
           MAAMNSSVLACNYAISG+A SSEL+  A + S   P V G K+PVIRAQ+   + +S+  
Sbjct: 1   MAAMNSSVLACNYAISGTA-SSELSKLASVPSAVFPTVSGPKLPVIRAQRAKPASDSKA- 58

Query: 59  DGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARA 118
           DGRRAAM  L +      TAAA SSANAGVI+EYLE+SKANKELND+KRLATSGANFARA
Sbjct: 59  DGRRAAM--LCLAATLFTTAAAVSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 116

Query: 119 YTVQFGTCK 127
           YTVQFGTCK
Sbjct: 117 YTVQFGTCK 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2164371	181	PSAN [Arabidopsis thaliana (ta	0.864	0.845	0.525	6.5e-35

TAIR|locus:2164371 PSAN [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 92/175 (52%), Positives = 109/175 (62%)

Query:     1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
             MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct:     1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query:    57 GTDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFA 116
             G++GRR                        GVIDEYLERSK NKELND+KRLATSGANFA
Sbjct:    59 GSNGRRSAMVFLAATLFSTAAVSASANA--GVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query:   117 RAYTVQFGTCK--------------KCHSSRMIWNWSAKGKINTSVVPMFSGNGE 157
             RA+TVQFG+CK              K H S+ I  W+AK + +TSVVPMFSGNGE
Sbjct:   117 RAFTVQFGSCKFPENFTGCQDLAKQKFHLSQKILLWNAKARTSTSVVPMFSGNGE 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.128   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       153   0.00081  105 3  11 22  0.49    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  143 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.76u 0.14s 12.90t   Elapsed:  00:00:01
  Total cpu time:  12.76u 0.14s 12.90t   Elapsed:  00:00:01
  Start:  Sat May 11 00:19:56 2013   End:  Sat May 11 00:19:57 2013

GO:0005516 "calmodulin binding" evidence=IEA;TAS;IPI

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA;TAS

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA;TAS

GO:0015979 "photosynthesis" evidence=IEA

GO:0042651 "thylakoid membrane" evidence=IEA

GO:0030093 "chloroplast photosystem I" evidence=IPI

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PSAN	PSAN; calmodulin binding; Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex. ; May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna. Plays an important role in docking plastocyanin to the PSI complex. Does not bind pigments (181 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	PSAG	PSAG (PHOTOSYSTEM I SUBUNIT G); Encodes subunit G of photosystem I, an 11-kDa membrane protein [...] (160 aa)				•		•	•		0.991
	PSAF	PSAF (photosystem I subunit F); Encodes subunit F of photosystem I. ; Participates in efficienc [...] (221 aa)				•		•	•		0.990
	LHCA4	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding; Encodes [...] (251 aa)				•		•	•		0.989
	PSAK	PSAK (photosystem I subunit K); Encodes subunit K of photosystem I reaction center. ; The exact [...] (130 aa)				•		•	•		0.988
	PSAH2	PSAH2 (PHOTOSYSTEM I SUBUNIT H2); PHOTOSYSTEM I SUBUNIT H2 (PSAH2); FUNCTIONS IN- molecular_fun [...] (145 aa)				•		•	•		0.984
	PSAE-1	PSAE-1 (PSA E1 KNOCKOUT); catalytic; mutant has Decreased effective quantum yield of photosyste [...] (143 aa)				•		•	•		0.984
	PSAH-1	PSAH-1 (photosystem I subunit H-1); Encodes subunit H of photosystem I reaction center subunit [...] (145 aa)				•		•	•		0.984
	LHCA1	LHCA1; chlorophyll binding; Encodes a component of the light harvesting complex associated with [...] (241 aa)				•		•	•		0.983
	PSBP-1	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding; Encodes a 23 kD extrinsic protein that is [...] (263 aa)				•			•		0.981
	LHCA3	LHCA3; chlorophyll binding; PSI type III chlorophyll a/b-binding protein (Lhca3*1) (273 aa)				•			•		0.980

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
PLN00054	139	PLN00054, PLN00054, photosystem I reaction center	2e-41
pfam05479	138	pfam05479, PsaN, Photosystem I reaction centre sub	2e-32
PLN00078	122	PLN00078, PLN00078, photosystem I reaction center	7e-04

>gnl|CDD|215042 PLN00054, PLN00054, photosystem I reaction center subunit N; Provisional

 Score =  135 bits (341), Expect = 2e-41
 Identities = 62/96 (64%), Positives = 71/96 (73%), Gaps = 4/96 (4%)

Query: 34  PAVHGHKMPVIRAQQV--DVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDE 91
            AV   KMPVI+AQ+V          +DGRRAA+  LA TLF+TA AAAS  ANAGVI +
Sbjct: 1   GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTAAAAAS--ANAGVISD 58

Query: 92  YLERSKANKELNDQKRLATSGANFARAYTVQFGTCK 127
            L +SKANKELND+KRLATSGANFAR+ TVQ GTCK
Sbjct: 59  LLAKSKANKELNDKKRLATSGANFARSRTVQDGTCK 94

Length = 139

>gnl|CDD|114215 pfam05479, PsaN, Photosystem I reaction centre subunit N (PSAN or PSI-N)

 Score =  112 bits (282), Expect = 2e-32
 Identities = 52/88 (59%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 40  KMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKAN 99
           K+   R  +   +   R +  RR+A+  LA  L   +TAA + SANAGV+DEYLE+SKAN
Sbjct: 10  KVQAARPARA-TTVVVRASAQRRSALLGLAALLG--STAALAPSANAGVVDEYLEKSKAN 66

Query: 100 KELNDQKRLATSGANFARAYTVQFGTCK 127
           KELND+KRLATSGANFARA TVQFG+CK
Sbjct: 67  KELNDKKRLATSGANFARARTVQFGSCK 94

This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin. Length = 138

>gnl|CDD|165653 PLN00078, PLN00078, photosystem I reaction center subunit N (PsaN); Provisional

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 58  TDGRRAAMALLAVTLFTTATAA---ASSSANAGVIDEYLERSKANKELNDQKRLATSGAN 114
              +R  ++   +  F T+TAA   A S +   ++ EYL++S+ NKE ND++RL      
Sbjct: 27  MLAQRNGISRRCLLTFLTSTAAIPEAGSESRKALLQEYLKKSEENKEKNDKERLDDY--- 83

Query: 115 FARAYTVQFG 124
           + R Y   FG
Sbjct: 84  YKRNYKDYFG 93

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PLN00054	139	photosystem I reaction center subunit N; Provision	100.0
PF05479	138	PsaN: Photosystem I reaction centre subunit N (PSA	100.0
PLN00078	122	photosystem I reaction center subunit N (PsaN); Pr	99.65
KOG3381	161	consensus Uncharacterized conserved protein [Funct	82.53

>PLN00054 photosystem I reaction center subunit N; Provisional

Probab=100.00  E-value=4.6e-42  Score=272.23  Aligned_cols=126  Identities=51%  Similarity=0.581  Sum_probs=112.1

Q ss_pred             Ccccccccceeeeccccc--cccccCCchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhccc
Q 030417           34 PAVHGHKMPVIRAQQVDV--SKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATS  111 (177)
Q Consensus        34 p~~~~~klPvIraqq~~~--~~~~~~~~gRRaal~~LAa~l~~tAa~a~a~~A~AgviedyL~KSkaNKELNDKKRLaTs  111 (177)
                      +++++.++|+|+||+++.  +...++++|||++|++||++|++++  +.+++||||||+|||+|||+|||||||||||||
T Consensus         1 ~~~s~~~~~~ika~r~~~A~~~~~~~~~grraa~~~Laa~l~~~a--a~~~~AnAgv~~d~L~kS~aNKeLNDKKRlATS   78 (139)
T PLN00054          1 GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTA--AAAASANAGVISDLLAKSKANKELNDKKRLATS   78 (139)
T ss_pred             CccccccccccccccccccccchhccccchHHHHHHHHHHHHHHH--hcccccchhHHHHHHHHhhhhhhhhhHHhhhhc
Confidence            457889999999999884  7778999999999999999999987  888999999999999999999999999999999


Q ss_pred             ccccchheeeeecccc------chhhhhhhhhcccccccccceEeeeecCCcccceeccc
Q 030417          112 GANFARAYTVQFGTCK------KCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLN  165 (177)
Q Consensus       112 ~ANfaRayTV~fGtCk------~c~~~~~i~~~~~k~~~~ts~v~mfsgnge~~q~~~~n  165 (177)
                      +|||+|+||||||+|+      |||++.+..    |-+.-+..++|.....+...-.+-.
T Consensus        79 ~ANfaRa~TV~~G~C~FP~Nf~GCqdlA~~k----~V~flsdDl~iECEGkd~~~CgS~~  134 (139)
T PLN00054         79 GANFARSRTVQDGTCKFPENFTGCEDLAKQK----KVPFISEDLALECEGKDKKKCGSKV  134 (139)
T ss_pred             chhhhhheeeecccccCCcccccHHHHHhcC----CCCccccccceeecCCccceecccc
Confidence            9999999999999999      999999876    5667777888888777665544443

>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins

Probab=100.00  E-value=2.2e-38  Score=251.07  Aligned_cols=96  Identities=58%  Similarity=0.779  Sum_probs=41.6

Q ss_pred             ccccceeeeccccccccccCCchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccch
Q 030417           38 GHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR  117 (177)
Q Consensus        38 ~~klPvIraqq~~~~~~~~~~~gRRaal~~LAa~l~~tAa~a~a~~A~AgviedyL~KSkaNKELNDKKRLaTs~ANfaR  117 (177)
                      ..++|+|++++.+ ....+.+++||+++++|+++|++||  +.+++||+|||||||+|||+||||||||||+||++||+|
T Consensus         8 sa~~qai~~~ka~-~~~~~~~~~~Raall~Laa~l~~tA--a~a~~A~A~l~~dyL~KSkaNKelNDKkRlaTs~aNfaR   84 (138)
T PF05479_consen    8 SAKVQAIRAAKAK-RVVVRASDGRRAALLGLAAVLAATA--ASASSARAGLLEDYLEKSKANKELNDKKRLATSYANFAR   84 (138)
T ss_dssp             ---------------------------------------------------SSSSS-SSHSSSSSTTTSS-TSSSSSSTS
T ss_pred             hcccchhhhccCC-CcccccCccchHHHHHHHHHHHHHh--hcCcchhhHHHHHHHHHhHhhhhhhhHHHhhhhhhhhhh
Confidence            4588999999887 4456778899999999999999887  677999999999999999999999999999999999999


Q ss_pred             heeeeecccc------chhhhhhhh
Q 030417          118 AYTVQFGTCK------KCHSSRMIW  136 (177)
Q Consensus       118 ayTV~fGtCk------~c~~~~~i~  136 (177)
                      +||||||+|+      |||++.+..
T Consensus        85 ~~tv~fg~c~fP~n~~gc~~la~~~  109 (138)
T PF05479_consen   85 AYTVQFGTCKFPENFTGCQDLAKQK  109 (138)
T ss_dssp             GTT--TSTSSSSS-SSSSSSS-STT
T ss_pred             heeeecccccCCccchhhHHHHHcC
Confidence            9999999999      999998754

The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.

>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional

Probab=99.65  E-value=3.7e-17  Score=128.08  Aligned_cols=70  Identities=33%  Similarity=0.503  Sum_probs=65.2

Q ss_pred             cccccCCchhHHHHHHHHHHHHHhhhhc-cccccchhhHHHHHHHhhhhhhhhhhhhhcccccccchheeeeeccccc
Q 030417           52 SKESRGTDGRRAAMALLAVTLFTTATAA-ASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKK  128 (177)
Q Consensus        52 ~~~~~~~~gRRaal~~LAa~l~~tAa~a-~a~~A~AgviedyL~KSkaNKELNDKKRLaTs~ANfaRayTV~fGtCk~  128 (177)
                      ...+|||.+||++|++|.+    ||||+ .++.++..+||+||+||++|||.|||+||   +++|+|+|++||++-+|
T Consensus        27 ~~a~rng~srr~llt~l~s----taaip~~~~~Sr~~liq~llkkSeeNKakndkERL---DdYYKRNykDYF~fveG   97 (122)
T PLN00078         27 MLAQRNGISRRCLLTFLTS----TAAIPEAGSESRKALLQEYLKKSEENKEKNDKERL---DDYYKRNYKDYFGLIEG   97 (122)
T ss_pred             HHHHhcchhHHHHHHHHHh----hccCCCCcCchHHHHHHHHHHHhHHhHHHhHHHHH---HHHHHHhHHHHHHHhcc
Confidence            4578999999999999998    88888 77889999999999999999999999999   99999999999999883

>KOG3381 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.53  E-value=0.4  Score=39.98  Aligned_cols=19  Identities=42%  Similarity=0.594  Sum_probs=14.5

Q ss_pred             hhhhhhhhhhhhhcccccc
Q 030417           96 SKANKELNDQKRLATSGAN  114 (177)
Q Consensus        96 SkaNKELNDKKRLaTs~AN  114 (177)
                      ..-||.||||+|.|..-.|
T Consensus       128 ~~vNKQLnDKERVaAA~EN  146 (161)
T KOG3381|consen  128 EAVNKQLNDKERVAAALEN  146 (161)
T ss_pred             HHHHhhhccHHHHHHHhcC
Confidence            3469999999999765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
2wsc_N	170	Improved Model Of Plant Photosystem I Length = 170		6e-29
2o01_N	85	The Structure Of A Plant Photosystem I Supercomplex		5e-15

>pdb|2WSC|N Chain N, Improved Model Of Plant Photosystem I Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 85/130 (65%), Gaps = 7/130 (5%)
Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDVSKESRG 57
           M+AMNS+VLACNYA SG    S+LNAK+ S   V++P +   K+P+I+A Q  V+ ES+ 
Sbjct: 1   MSAMNSTVLACNYARSGC---SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVT-ESKS 56
Query: 58  TDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFAR 117
             GRR                        GVI+EYLE+SK NKELND+KRLAT+GANFAR
Sbjct: 57  DQGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFAR 116
Query: 118 AYTVQFGTCK 127
           AYTV+FG+CK
Sbjct: 117 AYTVEFGSCK 126

>pdb|2O01|N Chain N, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 85

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 40/41 (97%)
Query: 87  GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCK 127
           GVI+EYLE+SK NKELND+KRLAT+GANFARAYTV+FG+CK
Sbjct: 1   GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCK 41
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
2wsc_N	170	PSAN, PSI-N, photosystem I-N subunit; photosynthes	6e-41
3lw5_N	85	Photosystem I-N subunit, photosystem I reaction ce	2e-20

>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N* Length = 170

 Score =  135 bits (339), Expect = 6e-41
 Identities = 80/147 (54%), Positives = 107/147 (72%), Gaps = 7/147 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRG 57
           M+AMNS+VLACNYA SG    S+LNAK+ S+ +   P +   K+P+I+A Q  V++    
Sbjct: 1   MSAMNSTVLACNYARSGC---SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTESKSD 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117
             GRR+A+  LA TLFT A AA++SSANAGVI+EYLE+SK NKELND+KRLAT+GANFAR
Sbjct: 58  -QGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFAR 116

Query: 118 AYTVQFGTCKKCHSSRMIWNWSAKGKI 144
           AYTV+FG+CK   +     + + + K+
Sbjct: 117 AYTVEFGSCKFPENFTGCQDLAKQKKV 143

>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CL1 PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N* Length = 85

 Score = 79.8 bits (196), Expect = 2e-20
 Identities = 34/41 (82%), Positives = 40/41 (97%)

Query: 87  GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCK 127
           GVI+EYLE+SK NKELND+KRLAT+GANFARAYTV+FG+CK
Sbjct: 1   GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCK 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
2wsc_N	170	PSAN, PSI-N, photosystem I-N subunit; photosynthes	100.0
3lw5_N	85	Photosystem I-N subunit, photosystem I reaction ce	99.9
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	88.08

>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*

Probab=100.00  E-value=1.1e-59  Score=379.92  Aligned_cols=132  Identities=62%  Similarity=0.936  Sum_probs=48.4

Q ss_pred             CccccccceecceeeccCCCCcccccceeeccC---CcccccccceeeeccccccccccCCchhHHHHHHHHHHHHHhhh
Q 030417            1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTAT   77 (177)
Q Consensus         1 MaamNSsVLacnyaisG~~g~seln~k~~sv~s---p~~~~~klPvIraqq~~~~~~~~~~~gRRaal~~LAa~l~~tAa   77 (177)
                      ||+||||||||||||||   ++|||+|++||||   |+++|+|||+||+||+.. .+....++||++|++||++|+++|+
T Consensus         1 ma~mnssvlac~yaisg---~sel~~k~~s~~s~~~~~~~~~klp~~ka~~~~~-~~~~~~~~rRaAl~~LaA~l~~~aa   76 (170)
T 2wsc_N            1 MSAMNSTVLACNYARSG---CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKV-TESKSDQGRRSALVYLAATLFTAAA   76 (170)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccchhhhhhhhcC---chhhhhhhccCcccccccccccccCcceeeeeec-ccccccchhHHHHHHHHHHHHHHhh
Confidence            89999999999999999   7999999999999   889999999999999874 4455668999999999999999998


Q ss_pred             hccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccchheeeeecccc------chhhhhhhh
Q 030417           78 AAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCK------KCHSSRMIW  136 (177)
Q Consensus        78 ~a~a~~A~AgviedyL~KSkaNKELNDKKRLaTs~ANfaRayTV~fGtCk------~c~~~~~i~  136 (177)
                      ++++++|||||++|||+|||+|||||||||||||+|||+|+||||||+|+      |||++.+..
T Consensus        77 ~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k  141 (170)
T 2wsc_N           77 AASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQK  141 (170)
T ss_dssp             ---------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCSSCCSCCSCSSSCCCTT
T ss_pred             cccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccccCCccccchHHHHhcC
Confidence            88999999999999999999999999999999999999999999999999      999998754

>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*

Probab=99.90  E-value=2e-26  Score=170.28  Aligned_cols=50  Identities=70%  Similarity=1.095  Sum_probs=47.7

Q ss_pred             hhHHHHHHHhhhhhhhhhhhhhcccccccchheeeeecccc------chhhhhhhh
Q 030417           87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCK------KCHSSRMIW  136 (177)
Q Consensus        87 gviedyL~KSkaNKELNDKKRLaTs~ANfaRayTV~fGtCk------~c~~~~~i~  136 (177)
                      ||++|||+||++|||||||||||||+|||+|+|||+||+|+      |||++.+..
T Consensus         1 gv~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~   56 (85)
T 3lw5_N            1 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQK   56 (85)
T ss_dssp             CCCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCSSCCSCCSCSSSCCCTT
T ss_pred             CcHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccccCCccccchHHHHhcC
Confidence            68999999999999999999999999999999999999999      999998754

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=88.08  E-value=0.077  Score=40.80  Aligned_cols=15  Identities=40%  Similarity=0.733  Sum_probs=12.7

Q ss_pred             hhhhhhhhhhhhccc
Q 030417           97 KANKELNDQKRLATS  111 (177)
Q Consensus        97 kaNKELNDKKRLaTs  111 (177)
                      .-||.||||+|.|..
T Consensus       101 ~vnKQl~DKERvaAA  115 (130)
T 3ux2_A          101 DINKQINDKERVAAA  115 (130)
T ss_dssp             CHHHHHHCHHHHHHH
T ss_pred             HHHHhhhhHHHHHHH
Confidence            479999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00