Citrus Sinensis ID: 030424

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKNVHDIDLDETMVLTNVFKEKSMRA
Secondary Structure (PSIPRED)
cccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEcccccEEEccccccEEEEEccccccccEEEEEccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHcHcccccEEEEcccccEEEEcccccccccccccEEEEEccccccccEEEEEccEEEccHHHcccHHHHHHHHHHHHHHccccccccccHEEEHcHcHHccccc
Coil and Loop (DISEMBL)
MALQICLALSisshnslnhspmssspstlisFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNglypklskaslpeemelqrytdsnegftllrpsswikvdkAGATVLFEEankgtnnlgvvvnpvrvaslgefgtpqfVADKLIQAEkrknvhdidldeTMVLTNVFKEKSMRA
Flexible Loop (DISEMBL)
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELsslrlskreLCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEeankgtnnlgvVVNPVRVASLGEFGTPQFVADKLIQAEKrknvhdidldetmvltnvfkeksmra
Low Complexity Region (SEG)
MALQICLAlsisshnslnhspmssspstlisfsVQTKKKTVVelsslrlskrelclssFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKNVHDIDLDETMVLTNVFKEKSMRA
Disordered region (IsUnstruct)
****ICLA*****************************KKTVVELSSLRLSKRELCLSSFVLILNGLYPKLS************Y***NEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKNVHDIDLDETMVLTNVF*******
Disordered Region (DISOPRED)
*****************************************************LCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLI*****************VLTNVFKEK****
Disordered Region (DISEMBL)
MALQICLALSISSHNS*************ISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKNVHDIDLDETMVLTNVFKEKSMRA
Disordered Region (DISPRO)
*ALQICLALSISSHNS***SP**S**STLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKNVHDIDLDETMVLTNVFKEK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKNVHDIDLDETMVLTNVFKEKSMRA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q8VY52	232	PsbP domain-containing pr	yes	no	0.593	0.452	0.629	2e-30

>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 PE=1 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 78/108 (72%), Gaps = 3/108 (2%)

Query: 46  SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
           S+ LSKR L LS   L  NG        S+ E   LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43  SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99

Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           GA  LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRK
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRK 147

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
255587317	244	conserved hypothetical protein [Ricinus	0.875	0.635	0.561	1e-36
224093568	204	predicted protein [Populus trichocarpa]	0.581	0.504	0.711	4e-35
297822573	240	hypothetical protein ARALYDRAFT_481771 [	0.598	0.441	0.660	2e-30
449459216	357	PREDICTED: psbP domain-containing protei	0.677	0.336	0.641	8e-30
357464759	237	PsbP domain-containing protein [Medicago	0.830	0.620	0.503	9e-30
30683953	232	PsbP domain-containing protein 2 [Arabid	0.593	0.452	0.629	8e-29
356508949	241	PREDICTED: psbP domain-containing protei	0.593	0.435	0.650	3e-28
356516389	251	PREDICTED: psbP domain-containing protei	0.401	0.282	0.802	1e-27
242073138	247	hypothetical protein SORBIDRAFT_06g01709	0.440	0.315	0.692	1e-26
357163596	244	PREDICTED: psbP domain-containing protei	0.423	0.307	0.68	2e-26

>gi|255587317|ref|XP_002534226.1| conserved hypothetical protein [Ricinus communis] gi|223525676|gb|EEF28158.1| conserved hypothetical protein [Ricinus communis]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 118/171 (69%), Gaps = 16/171 (9%)

Query: 1   MALQICLALSISSHNSLNHSP--MSSSPSTLIS------FSVQTKKKTVVELSSLRLSKR 52
           MALQ C ALS       N+ P  +SS P TL+        S   +K+ V+   S   SKR
Sbjct: 1   MALQACFALSCQGPYVQNNGPKSVSSLPRTLLHSISLPRASCPNRKEAVI--LSFCWSKR 58

Query: 53  ELCLSSFVLILNG-LYPKLSKASLPEEM-ELQRYTDSNEGFTLLRPSSWIKVDKAGATVL 110
           +L L+   L +NG L   +    L  EM EL+RYTD+ EGFTLLRPS+++KVDKAGATVL
Sbjct: 59  KLILA---LSINGSLLNIIPDTILAIEMGELERYTDAKEGFTLLRPSTYVKVDKAGATVL 115

Query: 111 FEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK-NVHDIDL 160
           FEE NKG+NN+GVVVNPVR+A+LGEFGTPQFVADKLIQAEKRK +  D++L
Sbjct: 116 FEEVNKGSNNIGVVVNPVRLATLGEFGTPQFVADKLIQAEKRKESTKDVEL 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093568|ref|XP_002309937.1| predicted protein [Populus trichocarpa] gi|222852840|gb|EEE90387.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 87/104 (83%), Gaps = 1/104 (0%)

Query: 51  KRELCLSSFVLILNGLYPKLSKAS-LPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATV 109
           +R+L LS   L++NG  P LS  S L +E+EL RYTDS EGFTLL PSS++KVDKAGATV
Sbjct: 15  RRKLNLSVLALLINGSLPNLSNNSILAQELELARYTDSKEGFTLLTPSSYVKVDKAGATV 74

Query: 110 LFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           LFEE NKG+NN+GVVV PVR+ASL EFG+PQFVADKLIQAEK+K
Sbjct: 75  LFEEVNKGSNNIGVVVTPVRLASLDEFGSPQFVADKLIQAEKKK 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822573|ref|XP_002879169.1| hypothetical protein ARALYDRAFT_481771 [Arabidopsis lyrata subsp. lyrata] gi|297325008|gb|EFH55428.1| hypothetical protein ARALYDRAFT_481771 [Arabidopsis lyrata subsp. lyrata]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 81/109 (74%), Gaps = 3/109 (2%)

Query: 45  SSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDK 104
           + + LSKR L LS   L  NG +  L KA   EE  LQRYTDSN GFTLL PSS+ KVDK
Sbjct: 50  TEISLSKRHLNLSILTLFFNGFF-LLDKAKSIEE--LQRYTDSNNGFTLLIPSSYTKVDK 106

Query: 105 AGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           AGA  LFEE N G+NN+GVVV+PVR+ SL +FGTPQFVADKLI AEKRK
Sbjct: 107 AGANALFEEPNNGSNNIGVVVSPVRIKSLDQFGTPQFVADKLINAEKRK 155

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459216|ref|XP_004147342.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Cucumis sativus] gi|449523543|ref|XP_004168783.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Cucumis sativus]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 90/120 (75%)

Query: 34  VQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTL 93
             T K+ +    +L  S+R + +S   L   G    +S A   E+ EL+RYTDS EGFTL
Sbjct: 152 THTGKQPLEHKFALVTSRRAMNVSILSLFFYGFSTSISSAVFAEDFELERYTDSKEGFTL 211

Query: 94  LRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           LRPSSW+KVDKAGATVLFEE NKG+NN+GVVVNPVR+ SLGEFGTPQFVADKLIQAEKRK
Sbjct: 212 LRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464759|ref|XP_003602661.1| PsbP domain-containing protein [Medicago truncatula] gi|358348394|ref|XP_003638232.1| PsbP domain-containing protein [Medicago truncatula] gi|355491709|gb|AES72912.1| PsbP domain-containing protein [Medicago truncatula] gi|355504167|gb|AES85370.1| PsbP domain-containing protein [Medicago truncatula]

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 107/159 (67%), Gaps = 12/159 (7%)

Query: 1   MALQICLALSISSHNSLNHSPM--SSSPSTLISFSVQTKKKTVVELSSLRL---SKRELC 55
           MAL+   + S  SHN+L H  +  SSS  TLI    ++   + +  S  ++    KR+L 
Sbjct: 1   MALK---SFSTLSHNTLFHKLIHASSSSPTLIP---KSTSPSCIHDSHKQMPCFGKRKLN 54

Query: 56  LSSFVL-ILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEA 114
           L+  +   L  ++P +  ++     ELQRYTDSNEGFTL  PSSW KVDKAGAT LF++ 
Sbjct: 55  LTLLLTPFLWSVFPNVLLSAQELITELQRYTDSNEGFTLQIPSSWTKVDKAGATALFQDP 114

Query: 115 NKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           NKG+NN+GVVVNPVR+ +LG+FGTPQFV DKL+QAE+RK
Sbjct: 115 NKGSNNIGVVVNPVRLTALGDFGTPQFVVDKLLQAERRK 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683953|ref|NP_850123.1| PsbP domain-containing protein 2 [Arabidopsis thaliana] gi|75161418|sp|Q8VY52.1|PPD2_ARATH RecName: Full=PsbP domain-containing protein 2, chloroplastic; AltName: Full=PsbP-related thylakoid lumenal protein 3; Flags: Precursor gi|18253015|gb|AAL62434.1| unknown protein [Arabidopsis thaliana] gi|22136412|gb|AAM91284.1| unknown protein [Arabidopsis thaliana] gi|330253054|gb|AEC08148.1| PsbP domain-containing protein 2 [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 78/108 (72%), Gaps = 3/108 (2%)

Query: 46  SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
           S+ LSKR L LS   L  NG        S+ E   LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43  SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99

Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           GA  LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRK
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRK 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508949|ref|XP_003523215.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Glycine max]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 84/106 (79%), Gaps = 1/106 (0%)

Query: 49  LSKRELCLSSFVLILNGLYPKL-SKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGA 107
            SKR + L++F+     L P       L +E+ELQRYTDS+EGFTLL PSSW KVDKAGA
Sbjct: 52  FSKRSILLTTFLWGQGMLLPNARDALLLAQELELQRYTDSDEGFTLLTPSSWTKVDKAGA 111

Query: 108 TVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           TVLF+EA+ G+NN+GVVVNPVR+ +L EFGTPQFVADKL+QAE+RK
Sbjct: 112 TVLFQEADMGSNNIGVVVNPVRLKTLEEFGTPQFVADKLLQAERRK 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516389|ref|XP_003526877.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Glycine max]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 65/71 (91%)

Query: 83  RYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFV 142
           RYTDS EGFTLL PSSW KVDKAGATVLF+EA+ G+NN+GVVVNPVR+ +L EFGTPQFV
Sbjct: 97  RYTDSEEGFTLLTPSSWTKVDKAGATVLFQEADMGSNNIGVVVNPVRLKTLEEFGTPQFV 156

Query: 143 ADKLIQAEKRK 153
           ADKL+QAE+RK
Sbjct: 157 ADKLLQAERRK 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242073138|ref|XP_002446505.1| hypothetical protein SORBIDRAFT_06g017090 [Sorghum bicolor] gi|241937688|gb|EES10833.1| hypothetical protein SORBIDRAFT_06g017090 [Sorghum bicolor]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 68/78 (87%)

Query: 77  EEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
           E +EL+RYTD  +GFTLL+P+SW KV+KAGAT LF++  KG+NN+GVVVNPVR+ SL EF
Sbjct: 88  EGIELERYTDQEQGFTLLKPTSWPKVEKAGATALFQQEGKGSNNIGVVVNPVRLNSLTEF 147

Query: 137 GTPQFVADKLIQAEKRKN 154
           GTPQFVAD+L+QAEK+K 
Sbjct: 148 GTPQFVADRLLQAEKKKE 165

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357163596|ref|XP_003579784.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Brachypodium distachyon]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 70/75 (93%)

Query: 79  MELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGT 138
           +EL+RYTD ++GFTLL+P+SW+KV+KAGAT LF++  KG+NN+GVVVNPVR++SL +FGT
Sbjct: 87  LELERYTDQDQGFTLLKPASWLKVEKAGATALFQQDGKGSNNIGVVVNPVRLSSLKDFGT 146

Query: 139 PQFVADKLIQAEKRK 153
           P+FVAD+L+QAEK+K
Sbjct: 147 PEFVADRLLQAEKKK 161

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2828415	232	AT2G28605 [Arabidopsis thalian	0.508	0.387	0.666	1.1e-25

TAIR|locus:2828415 AT2G28605 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 62/93 (66%), Positives = 71/93 (76%)

Query:    61 LILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNN 120
             L  NG     +KA   EE  LQRYTDSN GFTLL PSS+ KV+KAGA  LFEE N G+NN
Sbjct:    58 LFFNGFLLD-NKAKSMEE--LQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNN 114

Query:   121 LGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
             +GVVV+PVR+ SL +FG+PQFVADKLI AEKRK
Sbjct:   115 IGVVVSPVRIKSLDQFGSPQFVADKLINAEKRK 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       136   0.00091  102 3  11 22  0.43    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.09u 0.10s 13.19t   Elapsed:  00:00:01
  Total cpu time:  13.09u 0.10s 13.19t   Elapsed:  00:00:01
  Start:  Sat May 11 00:36:06 2013   End:  Sat May 11 00:36:07 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VII.1585.1	hypothetical protein (204 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00090150	hypothetical protein (129 aa)			•	•					0.583
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.582
	estExt_fgenesh4_pg.C_290310	hypothetical protein (227 aa)			•	•					0.543
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.540
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)			•	•					0.534
	gw1.XIV.2732.1	hypothetical protein (109 aa)			•	•					0.526
	gw1.70.142.1	hypothetical protein (191 aa)			•	•					0.526
	gw1.XIII.1619.1	hypothetical protein (398 aa)			•	•					0.522
	grail3.0038021201	SubName- Full=Putative uncharacterized protein; (182 aa)			•	•					0.519
	gw1.152.106.1	hypothetical protein (199 aa)			•	•					0.516

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
pfam01789	163	pfam01789, PsbP, PsbP	3e-09
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	0.001

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 81  LQRYTDSNEGFTLLRPSSW-IKVDKAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
            Q Y D+++G+  L P+ W  +V   G  V+F +  +   N+ VV++PV +  SL + G+
Sbjct: 10  FQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDKKKSLEDLGS 69

Query: 139 PQFVADKLIQ 148
           P+ V ++L++
Sbjct: 70  PEEVGERLLR 79

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 16/137 (11%)

Query: 19  HSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEE 78
            S  S+ P + ++ +  T  K V  +   +     L +S  ++         S+A+LP  
Sbjct: 52  QSAKSAKPDSPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIV---------SEANLPTA 102

Query: 79  ME----LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVV---NPVRVA 131
                  + Y D+ +G++   P +WI+V  AGA + F +      NL V     +  +  
Sbjct: 103 FASIPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYT 162

Query: 132 SLGEFGTPQFVADKLIQ 148
           SL + G+P+ V  ++++
Sbjct: 163 SLEDLGSPEEVGKRVLR 179

Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.97
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	99.95
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.87
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.76
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.69
PLN03152	241	hypothetical protein; Provisional	99.04
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	88.15

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.97  E-value=1.9e-30  Score=225.30  Aligned_cols=109  Identities=19%  Similarity=0.331  Sum_probs=93.0

Q ss_pred             HhhhccchhHHHHH-HHHHHHHhhhcCCCCCCCCccccCceeeecCCCceEEecCCCCccccccCCcEEeecCCCCCcee
Q 030424           43 ELSSLRLSKRELCL-SSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNL  121 (177)
Q Consensus        43 ~~~~~~~~RR~lll-~il~~~~t~~ll~~s~~a~A~e~gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNV  121 (177)
                      ....|.+.||.+++ ++++.++..+..+ .+.++|+..||++|+|+.|||+|+||.||++|++.|+||+|||+++.+|||
T Consensus        71 ~~~~~~~~rr~~~~~~l~~~~~~~s~~~-~~~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENV  149 (286)
T PLN00059         71 AKQVCAVGRRKSMMMGLLMSGLIVSEAN-LPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENL  149 (286)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHhhc-CchhhcCCcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccce
Confidence            44568899999855 4433444434333 335778888999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCC---CCCcccCCCHHHHHHHHHHHHhh
Q 030424          122 GVVVNPVR---VASLGEFGTPQFVADKLIQAEKR  152 (177)
Q Consensus       122 sV~VsPv~---~~SI~dfGsPeeVg~~L~k~e~~  152 (177)
                      ||+|+|++   +++|+|||+|+||||+|++++++
T Consensus       150 SV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa  183 (286)
T PLN00059        150 SVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLT  183 (286)
T ss_pred             EEEEecCCcccCCChHHcCCHHHHHHHHHHHHhc
Confidence            99999885   89999999999999999998877

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=99.95  E-value=1.5e-28  Score=212.28  Aligned_cols=119  Identities=24%  Similarity=0.319  Sum_probs=91.0

Q ss_pred             hhccchhHHHHHHHHHHHHhhhcCCCCCCCCccc----------cCceeeecCCCceEEecCCCCcccc---ccCCcEEe
Q 030424           45 SSLRLSKRELCLSSFVLILNGLYPKLSKASLPEE----------MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLF  111 (177)
Q Consensus        45 ~~~~~~RR~lll~il~~~~t~~ll~~s~~a~A~e----------~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F  111 (177)
                      .....+||++|+.++..++.++-++.+.++++++          .||.+|.  +|||+|+||++|++++   .+|+|++|
T Consensus        46 ~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f  123 (260)
T PLN00042         46 DNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRF  123 (260)
T ss_pred             ccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEe
Confidence            3466789988765432222223233233344443          6999995  5999999999999776   56999999


Q ss_pred             ecCCCCCceeEEEEeeCCCCCcccCCCHHH----HHHHHHHHHhhcC--------------CCcccchhhhh
Q 030424          112 EEANKGTNNLGVVVNPVRVASLGEFGTPQF----VADKLIQAEKRKN--------------VHDIDLDETMV  165 (177)
Q Consensus       112 ~D~~~~~eNVsV~VsPv~~~SI~dfGsPee----Vg~~L~k~e~~k~--------------st~~d~~e~~~  165 (177)
                      ||+++++|||+|+|+|+++++|+|||+|||    |+++|.|+....+              ..++|++++.+
T Consensus       124 ~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~  195 (260)
T PLN00042        124 EDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEV  195 (260)
T ss_pred             eccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEe
Confidence            999999999999999999999999999999    9999999887743              23577766654

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.87  E-value=9.6e-23  Score=164.08  Aligned_cols=77  Identities=39%  Similarity=0.696  Sum_probs=70.7

Q ss_pred             cCceeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEeeCCCC-CcccCCCHHHHHHHHHHHHhhcCC
Q 030424           79 MELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVA-SLGEFGTPQFVADKLIQAEKRKNV  155 (177)
Q Consensus        79 ~gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsPv~~~-SI~dfGsPeeVg~~L~k~e~~k~s  155 (177)
                      .||++|.|+.+||+|.||.||+++++.|+|++|+|+++.++||+|+|+|+... +|+|||+|+|||++|++++.+++.
T Consensus        21 ~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~~~~~~~~~   98 (175)
T PF01789_consen   21 TGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLLNGELASPG   98 (175)
T ss_dssp             SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHHHHCCCHCT
T ss_pred             CCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHhhhhccccc
Confidence            79999999999999999999999999999999999999999999999999855 999999999999999998876544

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.76  E-value=1.5e-18  Score=150.46  Aligned_cols=115  Identities=19%  Similarity=0.299  Sum_probs=83.5

Q ss_pred             hccchhHHHHHHHHHHHHhhhcCCCCCCCCccc-------------cCceeeec-----------CCCceEEecCCCCcc
Q 030424           46 SLRLSKRELCLSSFVLILNGLYPKLSKASLPEE-------------MELQRYTD-----------SNEGFTLLRPSSWIK  101 (177)
Q Consensus        46 ~~~~~RR~lll~il~~~~t~~ll~~s~~a~A~e-------------~gf~~y~D-----------~~dGYsflyP~gW~~  101 (177)
                      .....||++|+|+.+.++. +++... .+.|.|             .||--|.-           ...||+|+||.||++
T Consensus        40 ~~~~~rr~~~~~~~~~~~~-~~~~~~-~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~  117 (263)
T PLN00067         40 AVVIHRRELLLGLALAPLI-LIAPEP-PAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQ  117 (263)
T ss_pred             cchhHHHHHHhhhhhhhhh-hccCCc-hhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcC
Confidence            3456899999988754332 223222 233444             36666642           357999999999999


Q ss_pred             cccc----C-----------CcEEeecCCCCCceeEEEEeeC------CCCCcccCCCHHHHHHHHHHHHhh---cCCCc
Q 030424          102 VDKA----G-----------ATVLFEEANKGTNNLGVVVNPV------RVASLGEFGTPQFVADKLIQAEKR---KNVHD  157 (177)
Q Consensus       102 v~~~----G-----------~dv~F~D~~~~~eNVsV~VsPv------~~~SI~dfGsPeeVg~~L~k~e~~---k~st~  157 (177)
                      ++++    |           +|++|+|+.  ++||+|+|+|+      ++++|+|||+|++|+++|.+....   ++..+
T Consensus       118 v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eL  195 (263)
T PLN00067        118 TRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDEL  195 (263)
T ss_pred             ccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcce
Confidence            9986    4           899999955  77999999998      468999999999999999887766   22344


Q ss_pred             ccchhhh
Q 030424          158 IDLDETM  164 (177)
Q Consensus       158 ~d~~e~~  164 (177)
                      +|.+++.
T Consensus       196 LeAs~re  202 (263)
T PLN00067        196 LETSVEK  202 (263)
T ss_pred             EEeeeEe
Confidence            5555543

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.69  E-value=1.1e-16  Score=138.97  Aligned_cols=116  Identities=19%  Similarity=0.261  Sum_probs=86.3

Q ss_pred             cchhHHHHHHHHHHHHhhhcCCCCCCCCc----------------cccCceeeecC-------------CCceEEecCCC
Q 030424           48 RLSKRELCLSSFVLILNGLYPKLSKASLP----------------EEMELQRYTDS-------------NEGFTLLRPSS   98 (177)
Q Consensus        48 ~~~RR~lll~il~~~~t~~ll~~s~~a~A----------------~e~gf~~y~D~-------------~dGYsflyP~g   98 (177)
                      .++||.+|.++++++ ....++.+..++|                .+.||+.|..+             ...|+|+||.|
T Consensus        44 ~~~rr~~~~s~~~~~-~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~G  122 (262)
T PLN00066         44 AVSRRSALASGAAAA-SSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQG  122 (262)
T ss_pred             hhhHHHHHHHHHHHH-hhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCC
Confidence            369999998766542 2222333333332                22588998765             26799999999


Q ss_pred             Ccccccc-----CCcEEeecCCCCCceeEEEEeeC--------CCCCcccCCCHHHHHHHHHHHHhh---cCCCcccchh
Q 030424           99 WIKVDKA-----GATVLFEEANKGTNNLGVVVNPV--------RVASLGEFGTPQFVADKLIQAEKR---KNVHDIDLDE  162 (177)
Q Consensus        99 W~~v~~~-----G~dv~F~D~~~~~eNVsV~VsPv--------~~~SI~dfGsPeeVg~~L~k~e~~---k~st~~d~~e  162 (177)
                      |.++.++     |+++.|++.++.++||+|+|+|+        ++++|+|||+||+|++.|++....   ++..++++++
T Consensus       123 W~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eLl~a~~  202 (262)
T PLN00066        123 WEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSMEV  202 (262)
T ss_pred             CeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccceeEeee
Confidence            9999986     77888888889999999999998        589999999999999999986543   3455666665


Q ss_pred             hh
Q 030424          163 TM  164 (177)
Q Consensus       163 ~~  164 (177)
                      +.
T Consensus       203 re  204 (262)
T PLN00066        203 AE  204 (262)
T ss_pred             ee
Confidence            43

>PLN03152 hypothetical protein; Provisional

Probab=99.04  E-value=6.6e-10  Score=95.45  Aligned_cols=70  Identities=17%  Similarity=0.377  Sum_probs=53.8

Q ss_pred             cccCceeeecCCCceEEecCCCCcccccc-----------------CCcEEeecCCCCCceeEEEEeeC--------CCC
Q 030424           77 EEMELQRYTDSNEGFTLLRPSSWIKVDKA-----------------GATVLFEEANKGTNNLGVVVNPV--------RVA  131 (177)
Q Consensus        77 ~e~gf~~y~D~~dGYsflyP~gW~~v~~~-----------------G~dv~F~D~~~~~eNVsV~VsPv--------~~~  131 (177)
                      ++..+-.|  .++||+.-||..+..+-++                 --.++|..+ |++|||||+|+|+        +.+
T Consensus        74 nt~~w~~~--~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~k  150 (241)
T PLN03152         74 NTKSWFQF--YGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAK  150 (241)
T ss_pred             cchhhhhh--hCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccC
Confidence            33344444  4899999999999876532                 234555544 5899999999997        589


Q ss_pred             CcccCCCHHHHHHHHHHH
Q 030424          132 SLGEFGTPQFVADKLIQA  149 (177)
Q Consensus       132 SI~dfGsPeeVg~~L~k~  149 (177)
                      +|+|||+|+|||+.|+-.
T Consensus       151 DLtDLGsp~EVgkv~vP~  168 (241)
T PLN03152        151 DITDLGSLKEAAKIFVPG  168 (241)
T ss_pred             ChhHcCCHHHHHHhhCCC
Confidence            999999999999888754

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=88.15  E-value=0.6  Score=38.31  Aligned_cols=63  Identities=16%  Similarity=0.358  Sum_probs=36.2

Q ss_pred             eeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHHHHHHHHHHHhhc
Q 030424           82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK  153 (177)
Q Consensus        82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsPv~~~SI~dfGsPeeVg~~L~k~e~~k  153 (177)
                      .-|..++.=|++.||.+|.++.......+|=||..=+-|..+.  +-+..+       ..-|...+++|++.
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRIS--ayk~~~-------~~ygk~~i~~EL~e   64 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRIS--AYKGGS-------AQYGKECIRQELKE   64 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEE--EEE--S-------TTHHHHHHHHHHHH
T ss_pred             CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEE--EEeccc-------ccchHHHHHHHHHh
Confidence            4578888889999999999999777888899999999999554  443111       22455566666663

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		1e-06
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		2e-04

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 81  LQRYTDSNEGFTLLRPSSWIKVD-KAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
           LQ Y DS +G+  L P  W++V  +    V+F +  + T N+ VVVN V    SL E G+
Sbjct: 8   LQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGS 67
Query: 139 PQFVADKLIQ 148
           P+ V D+L++
Sbjct: 68  PEEVGDRLLR 77

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 81  LQRYTDSNEGFTLLRPSSWIKVDKAGAT----VLFEEANKGTNNLGVVVNPV-RVASLGE 135
           LQRY+D+ +G+  L P+ WI VD  GA+    V+F +  +   NL V+++ +    +L +
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTD 73
Query: 136 FGTPQFVADKLIQ 148
            GT   V  + ++
Sbjct: 74  LGTATDVGYRFMK 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	2e-12
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	2e-10
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	2e-10
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 70  LSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGAT----VLFEEANKGTNNLGVVV 125
           L          LQRY+D+ +G+  L P+ WI VD  GA+    V+F +  +   NL V++
Sbjct: 3   LGSCGGVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVII 62

Query: 126 NPV-RVASLGEFGTPQFVADKLIQA 149
           + +    +L + GT   V  + ++ 
Sbjct: 63  SEIPSDKTLTDLGTATDVGYRFMKT 87

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 81  LQRYTDSNEGFTLLRPSSWIKVD-KAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
           LQ Y DS +G+  L P  W++V  +    V+F +  + T N+ VVVN V    SL E G+
Sbjct: 8   LQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGS 67

Query: 139 PQFVADKLIQA 149
           P+ V D+L++ 
Sbjct: 68  PEEVGDRLLRN 78

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 80  ELQRYTDSNEGFTLLRPSSWI---KVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
           + Q Y    +GF L  PS W    +V+  G  + FE+    T+N+ V + P    S+ +F
Sbjct: 8   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 65

Query: 137 GTPQFVADKLIQAEKRKNVHDIDLDETMVLTNVFKEKSM 175
           G+P+    ++     R+        E    ++     ++
Sbjct: 66  GSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANV 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 36/166 (21%)

Query: 33  SVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEM------------- 79
           S  T     ++  S+ L+  E+  S  +  L+          LP E+             
Sbjct: 282 SAATTTHISLDHHSMTLTPDEV-KSLLLKYLD-----CRPQDLPREVLTTNPRRLSIIAE 335

Query: 80  ELQRYTDSNEGFTLLRPSSWIKVDKAGATVL-FEEANKGTNNLGVV---VN-PVRVASL- 133
            ++    + + +  +       + ++   VL   E  K  + L V     + P  + SL 
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 134 ---GEFGTPQFVADKLIQ---AEKRKN-----VHDIDLDETMVLTN 168
                      V +KL +    EK+       +  I L+  + L N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.75
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.82
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.8
3hlz_A	269	Uncharacterized protein BT_1490; NP_810393.1, stru	83.06

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.75  E-value=9.1e-23  Score=162.63  Aligned_cols=74  Identities=30%  Similarity=0.626  Sum_probs=70.5

Q ss_pred             cCceeeecCCCceEEecCCCCcccccc----CCcEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHHhh
Q 030424           79 MELQRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAEKR  152 (177)
Q Consensus        79 ~gf~~y~D~~dGYsflyP~gW~~v~~~----G~dv~F~D~~~~~eNVsV~VsPv~~-~SI~dfGsPeeVg~~L~k~e~~  152 (177)
                      .||++|+|+.|||+|+||.+|++++++    |+|++|+|+++.++||+|+|+|+++ ++|+|||+|+|||++|++++.+
T Consensus        12 ~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~~~   90 (170)
T 2lnj_A           12 ASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVND   90 (170)
Confidence            699999999999999999999999988    9999999999999999999999996 9999999999999999998554

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.82  E-value=1.4e-20  Score=148.24  Aligned_cols=75  Identities=36%  Similarity=0.616  Sum_probs=70.7

Q ss_pred             ccCceeeecCCCceEEecCCCCcccccc-CCcEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHHhh
Q 030424           78 EMELQRYTDSNEGFTLLRPSSWIKVDKA-GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAEKR  152 (177)
Q Consensus        78 e~gf~~y~D~~dGYsflyP~gW~~v~~~-G~dv~F~D~~~~~eNVsV~VsPv~~-~SI~dfGsPeeVg~~L~k~e~~  152 (177)
                      ..||++|.|+.+||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+|++||++|+++..+
T Consensus         5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~   81 (165)
T 2xb3_A            5 TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIA   81 (165)
T ss_dssp             -CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTS
T ss_pred             CCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhc
Confidence            3599999999999999999999999998 9999999999999999999999985 9999999999999999998765

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.80  E-value=9e-21  Score=153.65  Aligned_cols=73  Identities=29%  Similarity=0.488  Sum_probs=61.8

Q ss_pred             cCceeeecCCCceEEecCCCCcccc---ccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHH----HHHHHHHHHh
Q 030424           79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQF----VADKLIQAEK  151 (177)
Q Consensus        79 ~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~SI~dfGsPee----Vg~~L~k~e~  151 (177)
                      .||++|.  +|||+|+||.+|++++   .+|+|++|+|+++.++||+|+|+|+++++|+|||+|++    ||++|+++.+
T Consensus         7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~~~   84 (177)
T 1v2b_A            7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY   84 (177)
T ss_dssp             CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred             CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHHhh
Confidence            5999997  8999999999999766   45999999999999999999999999999999999999    6888888766


Q ss_pred             hc
Q 030424          152 RK  153 (177)
Q Consensus       152 ~k  153 (177)
                      +.
T Consensus        85 ~~   86 (177)
T 1v2b_A           85 SG   86 (177)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}

Probab=83.06  E-value=1.3  Score=38.03  Aligned_cols=61  Identities=18%  Similarity=0.352  Sum_probs=46.7

Q ss_pred             eeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHHHHHHHHHHHhh
Q 030424           82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKR  152 (177)
Q Consensus        82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsPv~~~SI~dfGsPeeVg~~L~k~e~~  152 (177)
                      .-|..++.=|++.||.+|+++.....--+|-+|..=+-|..+.--.         | -..-|...+++|++
T Consensus         5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk---------~-~~~yg~~~~~~El~   65 (269)
T 3hlz_A            5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK---------G-NASYGKDAIRQELK   65 (269)
T ss_dssp             EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE---------C-STTHHHHHHHHHHH
T ss_pred             ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc---------C-chhhHHHHHHHHHh
Confidence            4688889999999999999999888888899999999998655433         2 12345556666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-10

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 80  ELQRYTDSNEGFTLLRPSSWI---KVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
           + Q Y    +GF L  PS W    +V+  G  + FE+    T+N+ V + P    S+ +F
Sbjct: 2   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 59

Query: 137 GTPQFVADKL 146
           G+P+    ++
Sbjct: 60  GSPEQFLSQV 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.73

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.73  E-value=8.9e-19  Score=137.56  Aligned_cols=66  Identities=29%  Similarity=0.573  Sum_probs=59.9

Q ss_pred             cCceeeecCCCceEEecCCCCcccc---ccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHHHHHHH
Q 030424           79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKL  146 (177)
Q Consensus        79 ~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~SI~dfGsPeeVg~~L  146 (177)
                      .+|++|.|  |||+|+||+||+++.   ..|+|++|+|++++++||+|+|+|+++++|++||+|+++++++
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v   69 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQV   69 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHT
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHH
Confidence            37999976  999999999998765   4489999999999999999999999999999999999977665