Citrus Sinensis ID: 030427

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADILKFKSNFSIVV
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEccccHHHHHHHHHHccccccccccEEEEEcccccEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEcccccEEEEEEcccccccccEEcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHEEEEEccccHHHHHHHHHHHcccccccccEEEEEcccccEEEEEEccEEEEEEEEcccEEEEcccccccccEEEEccHHEEEEEcccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEEcccccEEEEc
Coil and Loop (DISEMBL)
mqlprlfffsgNKFNRALMEEQFILRVPPSVAERIDRLlsenesseedksldlsfcedgrsgtfvigndhfpvslmdlpcvvesfktyddcalvktadigqmimvrepgdstpdaveyrhgltppmrdARKRrfrrepdlnpeLVQRVEKDLLNImtgatvenadilkfksnfsivv
Flexible Loop (DISEMBL)
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLsenesseedksldlsfCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMimvrepgdstpdaveyrhgltppmrdarkrrfrrepdlnpelvqrVEKDLLNIMTgatvenadilkfksnfsivv
Low Complexity Region (SEG)
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRllsenesseedksldlsFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADILKFKSNFSIVV
Disordered region (IsUnstruct)
****RLFFFSGNKFNRALMEEQFILRVPPSV*********************LSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMV****************************************QRVEKDLLNIMTGATVENADILKFKSNF****
Disordered Region (DISOPRED)
*****************LMEEQFILRVPPSVAERIDR*************LDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADILKFKSNFSIVV
Disordered Region (DISEMBL)
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLS***********DLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADILKFKSNFSIVV
Disordered Region (DISPRO)
****RLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADILKFKSNFSIVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADILKFKSNFSIVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q9R1C0	341	Transcription initiation	yes	no	0.661	0.343	0.35	1e-15
Q6R1L1	341	Transcription initiation	no	no	0.661	0.343	0.342	1e-14
Q5H9L4	462	Transcription initiation	no	no	0.813	0.311	0.311	3e-14
Q5R7L9	349	Transcription initiation	no	no	0.661	0.335	0.342	3e-14
Q4R5A5	349	Transcription initiation	N/A	no	0.661	0.335	0.342	3e-14
Q15545	349	Transcription initiation	no	no	0.661	0.335	0.342	3e-14
Q9D3R9	471	Transcription initiation	no	no	0.615	0.231	0.323	5e-13
Q2HJG8	349	Transcription initiation	no	no	0.661	0.335	0.328	7e-13
O13701	393	Transcription initiation	yes	no	0.661	0.297	0.330	1e-10
Q9VHY5	479	Transcription initiation	yes	no	0.649	0.240	0.318	1e-10

>sp|Q9R1C0|TAF7_MOUSE Transcription initiation factor TFIID subunit 7 OS=Mus musculus GN=Taf7 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 23/140 (16%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +DK L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYAATVRRAVQSGHVNLKDK-LSIELHPDGRHGIVRVDRVPLAAKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           PCV ES KT D     KTADI QM++    GD  P   E                     
Sbjct: 71  PCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPPVEEAAATADPKANKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR 136
            + HG+T P+++ RKRRFR+
Sbjct: 131 VWNHGITLPLKNVRKRRFRK 150

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).
Mus musculus (taxid: 10090)

>sp|Q6R1L1|TAF7_CRIGR Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 23/140 (16%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLAAKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           PCV+ES KT D     KTADI QM++    GD  P   E                     
Sbjct: 71  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR 136
            + HG+T P+++ RKRRFR+
Sbjct: 131 VWNHGITLPLKNVRKRRFRK 150

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Cricetulus griseus (taxid: 10029)

>sp|Q5H9L4|TAF7L_HUMAN Transcription initiation factor TFIID subunit 7-like OS=Homo sapiens GN=TAF7L PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 23/167 (13%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+P   A  + R L+ ++S +    L +    DGR     + +      L+DL
Sbjct: 98  VENQFILRLPLEHACTV-RNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDL 156

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMV----------REPGDST-PDAVE---------- 117
           PCV+ES +T D     KTADI QM++            EP  ST P+ V           
Sbjct: 157 PCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKC 216

Query: 118 -YRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVEN 163
            ++HG+TPP+++ RK+RFR+     P++ +  +      +    VEN
Sbjct: 217 VWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVEN 263

Probably functions as a spermatogensis-specific component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q5R7L9|TAF7_PONAB Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 23/140 (16%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLASKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           PCV+ES KT D     KTADI QM++    GD  P   E                     
Sbjct: 71  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR 136
            + HG+T P+++ RKRRFR+
Sbjct: 131 IWNHGITLPLKNVRKRRFRK 150

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Pongo abelii (taxid: 9601)

>sp|Q4R5A5|TAF7_MACFA Transcription initiation factor TFIID subunit 7 OS=Macaca fascicularis GN=TAF7 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 23/140 (16%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLASKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           PCV+ES KT D     KTADI QM++    GD  P   E                     
Sbjct: 71  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR 136
            + HG+T P+++ RKRRFR+
Sbjct: 131 IWNHGITLPLKNVRKRRFRK 150

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Macaca fascicularis (taxid: 9541)

>sp|Q15545|TAF7_HUMAN Transcription initiation factor TFIID subunit 7 OS=Homo sapiens GN=TAF7 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 23/140 (16%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLASKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           PCV+ES KT D     KTADI QM++    GD  P   E                     
Sbjct: 71  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR 136
            + HG+T P+++ RKRRFR+
Sbjct: 131 IWNHGITLPLKNVRKRRFRK 150

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Homo sapiens (taxid: 9606)

>sp|Q9D3R9|TAF7L_MOUSE Transcription initiation factor TFIID subunit 7-like OS=Mus musculus GN=Taf7l PE=1 SV=2

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 24/133 (18%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +EEQFILR+PP  A  + +++    ++ +DK L + F  DG      + N   P  L++L
Sbjct: 106 VEEQFILRLPPEQAYAVRKIIHSRNAAWKDK-LKIDFSPDGHHAVVQVDNVSLPAKLVNL 164

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMV----------REPGDSTPDAV------------ 116
           PCV+ S KT D     KTAD+ QM++            EP  ST   V            
Sbjct: 165 PCVIGSLKTIDRKTFYKTADVSQMLVCSPEGEPHSPPEEPVVSTGPTVIGISEGKAERKK 224

Query: 117 -EYRHGLTPPMRD 128
             ++HG+TPP+++
Sbjct: 225 YNWKHGITPPLKN 237

Probably functions as a spermatogensis-specific component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q2HJG8|TAF7_BOVIN Transcription initiation factor TFIID subunit 7 OS=Bos taurus GN=TAF7 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 23/140 (16%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LSIELHPDGRHGIVRVDRVPLAAKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           P V+ES KT D     KTAD+ QM++    GD  P   E                     
Sbjct: 71  PRVMESLKTIDKKTFYKTADVCQMLVSTVDGDLYPPVEEPVATADPKASKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR 136
            + HG+T P+++ RKRRFR+
Sbjct: 131 VWNHGITLPLKNVRKRRFRK 150

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Bos taurus (taxid: 9913)

>sp|O13701|TAF7_SCHPO Transcription initiation factor TFIID subunit 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf7 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +EEQ ILR+PP       R   EN        + + F +  R+   V G+  +   L+DL
Sbjct: 72  IEEQIILRLPPGEDCEYVRKAIENREVGRGADIWVKFKDQRRAVVHVNGH-LYAAKLVDL 130

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE---------YRHGLTPPMRDA 129
           PC++ES K++D   + K ADI QM++  E  +     +          Y HGLT PM   
Sbjct: 131 PCIIESNKSFDKKVIFKAADICQMLIATERIEHENSVLNTQLKQADYIYPHGLTTPMHWV 190

Query: 130 RKRRFRR 136
           R++RFR+
Sbjct: 191 RQKRFRK 197

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Also involved in the transport of mRNA from the nucleus to the cytoplasm.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VHY5|TAF7_DROME Transcription initiation factor TFIID subunit 7 OS=Drosophila melanogaster GN=Taf7 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 20/135 (14%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFI+RVP  +A+ +   +  N  + +D+ L +    D R G   I +      L+DL
Sbjct: 55  LESQFIMRVPKELADTVHEAI--NAGTIKDR-LTIQLDPDLRYGEVRIDDQILYTKLVDL 111

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE-----------------YRHG 121
           P VVES+KT D+ +  K+ADI Q+++ +E  +   +                    + HG
Sbjct: 112 PTVVESYKTIDNKSFYKSADICQILICKEEREDETEKESPNKNKKKDPNKVDKKYLFPHG 171

Query: 122 LTPPMRDARKRRFRR 136
           +TPP ++ RKRRFR+
Sbjct: 172 ITPPCKNVRKRRFRK 186

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
15222691	203	TBP-associated factor 7 [Arabidopsis tha	0.819	0.714	0.820	4e-65
79319993	239	TBP-associated factor 7 [Arabidopsis tha	0.824	0.610	0.815	9e-65
297853236	202	hypothetical protein ARALYDRAFT_474587 [	0.830	0.727	0.795	2e-64
224057030	149	predicted protein [Populus trichocarpa]	0.841	1.0	0.845	3e-63
224075996	161	predicted protein [Populus trichocarpa]	0.892	0.981	0.810	6e-63
359478454	205	PREDICTED: transcription initiation fact	0.819	0.707	0.848	5e-61
297746455	148	unnamed protein product [Vitis vinifera]	0.819	0.979	0.848	2e-60
449531832	201	PREDICTED: transcription initiation fact	0.836	0.736	0.817	3e-60
449450024	201	PREDICTED: transcription initiation fact	0.836	0.736	0.810	9e-60
357462725	206	Transcription initiation factor TFIID su	0.892	0.766	0.767	1e-58

>gi|15222691|ref|NP_175926.1| TBP-associated factor 7 [Arabidopsis thaliana] gi|12323163|gb|AAG51559.1|AC027034_5 Serine/arginine-rich protein, putative; 48931-50251 [Arabidopsis thaliana] gi|38638688|gb|AAR25638.1| At1g55300 [Arabidopsis thaliana] gi|39545922|gb|AAR28024.1| TAF7 [Arabidopsis thaliana] gi|50253538|gb|AAT71971.1| At1g55300 [Arabidopsis thaliana] gi|222423319|dbj|BAH19635.1| AT1G55300 [Arabidopsis thaliana] gi|332195099|gb|AEE33220.1| TBP-associated factor 7 [Arabidopsis thaliana]

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/145 (82%), Positives = 132/145 (91%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPSV+ERIDRLLSE+ S+ ++  LDL F EDGR+GTF+IGND FP SL+DL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           P VVESFKTYDDCALVKTADIGQMIMVREPGD  P+ VEYRHGLTPPM+DARKRRFRREP
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVEN 163
           DLNPELVQRVE+DLLNI++G TVEN
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVEN 145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319993|ref|NP_001031194.1| TBP-associated factor 7 [Arabidopsis thaliana] gi|222423441|dbj|BAH19691.1| AT1G55300 [Arabidopsis thaliana] gi|332195100|gb|AEE33221.1| TBP-associated factor 7 [Arabidopsis thaliana]

 Score =  251 bits (641), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 132/146 (90%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPSV+ERIDRLLSE+ S+ ++  LDL F EDGR+GTF+IGND FP SL+DL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           P VVESFKTYDDCALVKTADIGQMIMVREPGD  P+ VEYRHGLTPPM+DARKRRFRREP
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENA 164
           DLNPELVQRVE+DLLNI++G TVEN 
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVENV 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853236|ref|XP_002894499.1| hypothetical protein ARALYDRAFT_474587 [Arabidopsis lyrata subsp. lyrata] gi|297340341|gb|EFH70758.1| hypothetical protein ARALYDRAFT_474587 [Arabidopsis lyrata subsp. lyrata]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 132/147 (89%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPSV+ERIDRLLS+  S+ ++  LDL F EDGR+GTF+IGND FP SL+DL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSDEASTSDEIPLDLCFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           P VVES+KTYDDCALVKTADIGQMIMVREPGD  P+ VEYRHGLTPPM+DARKRRFRREP
Sbjct: 61  PAVVESWKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENAD 165
           DLNPELVQRVE+DLLNI++G TVEN +
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVENVN 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057030|ref|XP_002299114.1| predicted protein [Populus trichocarpa] gi|222846372|gb|EEE83919.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/149 (84%), Positives = 138/149 (92%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPS+AE++DRLLSE  SS E++SLDLSF EDGRSGTFVIG++HFP SL+DL
Sbjct: 1   MEEQFILRVPPSIAEKLDRLLSETASSSEEQSLDLSFSEDGRSGTFVIGDEHFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PC VES+KTYDDCALVKT+DIGQM+MVRE GD+ PD VEYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCAVESYKTYDDCALVKTSDIGQMLMVREAGDTAPDVVEYRHGLTPPMRDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADIL 167
           DLNPELVQRVEKDLLNIM G TVENADIL
Sbjct: 121 DLNPELVQRVEKDLLNIMAGGTVENADIL 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075996|ref|XP_002304864.1| predicted protein [Populus trichocarpa] gi|222842296|gb|EEE79843.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (625), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 128/158 (81%), Positives = 138/158 (87%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRV PS+AE++DRLLS+  SS E++SLDLSF EDGR GTFVIGN+HFP SL+DL
Sbjct: 1   MEEQFILRVTPSIAEKLDRLLSDTASSSEEQSLDLSFSEDGRGGTFVIGNEHFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PCVVES+KTYDDCALVKTADIGQMIMVRE GD+ PD VEYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVVESYKTYDDCALVKTADIGQMIMVREAGDTVPDVVEYRHGLTPPMRDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADILKFKSNFSIV 176
            LNPELVQRVEKDLLNIM G TVENADIL     F  V
Sbjct: 121 YLNPELVQRVEKDLLNIMAGGTVENADILSIMHIFDFV 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478454|ref|XP_002285704.2| PREDICTED: transcription initiation factor TFIID subunit 7-like [Vitis vinifera]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 123/145 (84%), Positives = 133/145 (91%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPS+AERI+RLL+EN SS EDKSLDLSF EDGRSGTFVIGNDHFP SL+DL
Sbjct: 10  MEEQFILRVPPSIAERIERLLNENSSSSEDKSLDLSFSEDGRSGTFVIGNDHFPASLLDL 69

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PCV+ES+KTYDD  L+KTADIGQMIMVRE GD+ PD VEYRHGLTPPMRDARKRRFRREP
Sbjct: 70  PCVLESYKTYDDSVLIKTADIGQMIMVREEGDTAPDVVEYRHGLTPPMRDARKRRFRREP 129

Query: 139 DLNPELVQRVEKDLLNIMTGATVEN 163
           DLNPELV+RVE+DLLNIM G T EN
Sbjct: 130 DLNPELVRRVERDLLNIMAGGTAEN 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746455|emb|CBI16511.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/145 (84%), Positives = 133/145 (91%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPS+AERI+RLL+EN SS EDKSLDLSF EDGRSGTFVIGNDHFP SL+DL
Sbjct: 1   MEEQFILRVPPSIAERIERLLNENSSSSEDKSLDLSFSEDGRSGTFVIGNDHFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PCV+ES+KTYDD  L+KTADIGQMIMVRE GD+ PD VEYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVLESYKTYDDSVLIKTADIGQMIMVREEGDTAPDVVEYRHGLTPPMRDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVEN 163
           DLNPELV+RVE+DLLNIM G T EN
Sbjct: 121 DLNPELVRRVERDLLNIMAGGTAEN 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531832|ref|XP_004172889.1| PREDICTED: transcription initiation factor TFIID subunit 7-like [Cucumis sativus]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 132/148 (89%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQF+LRVPPSVAERI+RLL+EN SS +D SLDLSF EDGRSGTF IG+DHFP SL+DL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PCVVES+KTYDD  L+K ADIGQMIMVREP D  PD+ EYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADI 166
           DLNPELV+RVEKDLLNIM G T ENAD+
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADV 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450024|ref|XP_004142764.1| PREDICTED: transcription initiation factor TFIID subunit 7-like [Cucumis sativus]

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 132/148 (89%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQF+LRVPPSVAERI+RLL+EN SS +D SLDLSF +DGRSGTF IG+DHFP SL+DL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSDDGRSGTFAIGDDHFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PCVVES+KTYDD  L+K ADIGQMIMVREP D  PD+ EYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADI 166
           DLNPELV+RVEKDLLNIM G T ENAD+
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADV 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462725|ref|XP_003601644.1| Transcription initiation factor TFIID subunit [Medicago truncatula] gi|355490692|gb|AES71895.1| Transcription initiation factor TFIID subunit [Medicago truncatula]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 136/159 (85%), Gaps = 1/159 (0%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENE-SSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77
           MEEQFILRVPP+VAERI+RLL+EN  SS EDKSLDL F +DGRSGTFVIG++HFP SL+D
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLQFSDDGRSGTFVIGDEHFPASLLD 60

Query: 78  LPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRRE 137
           LP VVES+KTYDD +LVKTADIGQMIMVRE GD+ PD +EYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPAVVESYKTYDDNSLVKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 138 PDLNPELVQRVEKDLLNIMTGATVENADILKFKSNFSIV 176
           PDLNPELV RVEKDLL I+ G T EN DIL   S+  + 
Sbjct: 121 PDLNPELVSRVEKDLLKIIAGGTAENIDILSSYSHVEVA 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2035656	239	TAF7 "TBP-associated factor 7"	0.819	0.606	0.765	2e-56
WB|WBGene00006388	254	taf-7.1 [Caenorhabditis elegan	0.463	0.322	0.352	9.4e-17
UNIPROTKB|Q20788	254	taf-7.1 "Protein TAF-7.1" [Cae	0.463	0.322	0.352	9.4e-17
MGI|MGI:1346348	341	Taf7 "TAF7 RNA polymerase II,	0.615	0.319	0.356	5.3e-15
RGD|1309935	341	Taf7 "TAF7 RNA polymerase II,	0.615	0.319	0.356	6.8e-15
UNIPROTKB|J9NVG0	349	TAF7 "Uncharacterized protein"	0.615	0.312	0.365	9.7e-15
UNIPROTKB|F1LV83	353	F1LV83 "Uncharacterized protei	0.587	0.294	0.308	1.1e-14
UNIPROTKB|Q15545	349	TAF7 "Transcription initiation	0.615	0.312	0.365	1.2e-14
UNIPROTKB|Q4R5A5	349	TAF7 "Transcription initiation	0.615	0.312	0.365	1.2e-14
UNIPROTKB|Q5R7L9	349	TAF7 "Transcription initiation	0.615	0.312	0.365	1.2e-14

TAIR|locus:2035656 TAF7 "TBP-associated factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 111/145 (76%), Positives = 120/145 (82%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDL 78
             MEEQFILRVPPSV+ERIDR                 F EDGR+GTF+IGND FP SL+DL
Sbjct:     1 MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query:    79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
             P VVESFKTYDDCALVKTADIGQMIMVREPGD  P+ VEYRHGLTPPM+DARKRRFRREP
Sbjct:    61 PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query:   139 DLNPELVQRVEKDLLNIMTGATVEN 163
             DLNPELVQRVE+DLLNI++G TVEN
Sbjct:   121 DLNPELVQRVERDLLNILSGGTVEN 145

GO:0005634 "nucleus" evidence=ISM

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

WB|WBGene00006388 taf-7.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
 Identities = 30/85 (35%), Positives = 41/85 (48%)

Query:    20 EEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDLP 79
             EE  ILRVPP V  R+++                 F ED R+    +GN   P  ++DLP
Sbjct:    24 EEHLILRVPPDVVNRMEKAVNGEIDAEELGIN---FQEDNRTVQIRLGNQILPAKILDLP 80

Query:    80 CVVESFKTYDDCALVKTADIGQMIM 104
              + E  KT D+  L K  D+ QMI+
Sbjct:    81 TINEVHKTLDNSTLYKVTDVSQMII 105

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0051123 "RNA polymerase II transcriptional preinitiation complex assembly" evidence=ISS

GO:0035034 "histone acetyltransferase regulator activity" evidence=ISS

GO:0000988 "protein binding transcription factor activity" evidence=ISS

UNIPROTKB|Q20788 taf-7.1 "Protein TAF-7.1" [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
 Identities = 30/85 (35%), Positives = 41/85 (48%)

Query:    20 EEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDLP 79
             EE  ILRVPP V  R+++                 F ED R+    +GN   P  ++DLP
Sbjct:    24 EEHLILRVPPDVVNRMEKAVNGEIDAEELGIN---FQEDNRTVQIRLGNQILPAKILDLP 80

Query:    80 CVVESFKTYDDCALVKTADIGQMIM 104
              + E  KT D+  L K  D+ QMI+
Sbjct:    81 TINEVHKTLDNSTLYKVTDVSQMII 105

GO:2001141 "regulation of RNA biosynthetic process" evidence=ISS

GO:0035065 "regulation of histone acetylation" evidence=ISS

MGI|MGI:1346348 Taf7 "TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
 Identities = 41/115 (35%), Positives = 53/115 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QFILR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    12 LESQFILRLPPEYAATVRRAVQSGHVNLKDKLSIELH-PDGRHG--IVRVDRVPLAAKLV 68

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARK 131
             DLPCV ES KT D     KTADI QM++    GD  P  VE       P  + +K
Sbjct:    69 DLPCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPP-VEEAAATADPKANKKK 122

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030520 "intracellular estrogen receptor signaling pathway" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0035035 "histone acetyltransferase binding" evidence=ISO;IPI

GO:0035067 "negative regulation of histone acetylation" evidence=ISO

GO:0042809 "vitamin D receptor binding" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1309935 Taf7 "TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
 Identities = 41/115 (35%), Positives = 53/115 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QFILR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    12 LESQFILRLPPEYAATVRRAVQSGHVNLKDRLSIELH-PDGRHG--IVRVDRVPLAAKLV 68

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARK 131
             DLPCV ES KT D     KTADI QM++    GD  P  VE       P  + +K
Sbjct:    69 DLPCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPP-VEEPAATADPKANKKK 122

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0003713 "transcription coactivator activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA;ISO

GO:0008024 "positive transcription elongation factor complex b" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0030520 "intracellular estrogen receptor signaling pathway" evidence=IEA;ISO

GO:0033276 "transcription factor TFTC complex" evidence=IEA;ISO

GO:0035035 "histone acetyltransferase binding" evidence=IEA;ISO

GO:0035067 "negative regulation of histone acetylation" evidence=IEA;ISO

GO:0042809 "vitamin D receptor binding" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO

GO:0071339 "MLL1 complex" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|J9NVG0 TAF7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 148 (57.2 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
 Identities = 42/115 (36%), Positives = 54/115 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QFILR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    12 LESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELH-PDGRHG--IVRVDRVPLASKLV 68

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARK 131
             DLPCV+ES KT D     KTADI QM++    GD  P  VE     T P    +K
Sbjct:    69 DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPP-VEEPVATTDPKASKKK 122

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

UNIPROTKB|F1LV83 F1LV83 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 33/107 (30%), Positives = 47/107 (43%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDL 78
             +E QFILR+PP  A  + R                    D R     + +      ++DL
Sbjct:    18 LENQFILRLPPEHASTV-RKIIRSGNAAMRDKLKIDLSPDSRHAIVQVDDVSLSAKVVDL 76

Query:    79 PCVVESFKTYDDCALVKTADIGQMIMVREPGD--STPDAVEYRHGLT 123
             PCV+ S KT+D     KTAD+ QM++    GD  S+P+      G T
Sbjct:    77 PCVIGSLKTHDRKTFYKTADVSQMLLCSAEGDLHSSPEEPATSAGAT 123

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q15545 TAF7 "Transcription initiation factor TFIID subunit 7" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 42/115 (36%), Positives = 54/115 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QFILR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    12 LESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELH-PDGRHG--IVRVDRVPLASKLV 68

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARK 131
             DLPCV+ES KT D     KTADI QM++    GD  P  VE     T P    +K
Sbjct:    69 DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPP-VEEPVASTDPKASKKK 122

GO:0030520 "intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0008024 "positive transcription elongation factor complex b" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA

GO:0000296 "spermine transport" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0035035 "histone acetyltransferase binding" evidence=IPI

GO:0035067 "negative regulation of histone acetylation" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042809 "vitamin D receptor binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q4R5A5 TAF7 "Transcription initiation factor TFIID subunit 7" [Macaca fascicularis (taxid:9541)]

 Score = 147 (56.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 42/115 (36%), Positives = 54/115 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QFILR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    12 LESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELH-PDGRHG--IVRVDRVPLASKLV 68

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARK 131
             DLPCV+ES KT D     KTADI QM++    GD  P  VE     T P    +K
Sbjct:    69 DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPP-VEEPVASTDPKASKKK 122

GO:0071339 "MLL1 complex" evidence=ISS

UNIPROTKB|Q5R7L9 TAF7 "Transcription initiation factor TFIID subunit 7" [Pongo abelii (taxid:9601)]

 Score = 147 (56.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 42/115 (36%), Positives = 54/115 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QFILR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    12 LESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELH-PDGRHG--IVRVDRVPLASKLV 68

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARK 131
             DLPCV+ES KT D     KTADI QM++    GD  P  VE     T P    +K
Sbjct:    69 DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPP-VEEPVASTDPKASKKK 122

GO:0071339 "MLL1 complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	TAF7	TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor; TBP-ASSOCIATED FACTOR 7 (TAF7); FUNCTIONS IN- general RNA polymerase II transcription factor activity; INVOLVED IN- transcription initiation from RNA polymerase II promoter; LOCATED IN- transcription factor TFIID complex; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- TAFII55 protein conserved region (InterPro-IPR006751); Has 276 Blast hits to 276 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 59; Plants - 29; Viruses - 0; Other [...] (239 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	TAF4	TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor; TBP-ASSOCIATED FACTOR 4 (TAF4) [...] (823 aa)					•				0.998
	HAF01	HAF01; DNA binding / histone acetyltransferase; This gene is predicted to encode a histone acet [...] (1919 aa)					•				0.998
	TAF4B	TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor; TBP-ASSOCIATED FACTOR 4B (TA [...] (720 aa)					•				0.998
	AT5G08450	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (918 aa)							•		0.829
	NAP1;2	NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding; This gene is predicted to encode a nucle [...] (379 aa)							•		0.679
	TAF13	TAF13 (TBP-ASSOCIATED FACTOR 13); DNA binding / RNA polymerase II transcription factor; TBP-ASS [...] (126 aa)				•			•		0.676
	UBA2A	UBP1 interacting protein 2a (UBA2a); encodes a nuclear protein that binds to RNA with a specifi [...] (478 aa)							•		0.629
	TAF2	TAF2 (TBP-ASSOCIATED FACTOR 2); metallopeptidase/ zinc ion binding; TBP-ASSOCIATED FACTOR 2 (TA [...] (1390 aa)							•		0.625
	PTAC17	PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17); PLASTID TRANSCRIPTIONALLY ACTIVE17 (PTAC17); LOCAT [...] (444 aa)							•		0.599
	TAF11	TAF11 (TBP-ASSOCIATED FACTOR 11); DNA binding / RNA polymerase II transcription factor/ transcr [...] (210 aa)							•		0.538

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
cd08047	162	cd08047, TAF7, TATA Binding Protein (TBP) Associat	5e-54
pfam04658	157	pfam04658, TAFII55_N, TAFII55 protein conserved re	6e-48
COG5414	392	COG5414, COG5414, TATA-binding protein-associated	4e-17

>gnl|CDD|173966 cd08047, TAF7, TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

 Score =  168 bits (428), Expect = 5e-54
 Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 15/150 (10%)

Query: 20  EEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLP 79
           EEQFILR+PP VA+R+ + + E +S+E+  S+ L   ED R     I    +P  L+DLP
Sbjct: 1   EEQFILRLPPDVADRLRKAIEEGDSNEKLLSITLF--EDSRRAVVRINGQKYPAKLVDLP 58

Query: 80  CVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAV-------------EYRHGLTPPM 126
            ++ES KT D   L KTADI QM++V EP DS  +A              EY HGLTPPM
Sbjct: 59  TIIESHKTLDKKNLYKTADISQMLIVYEPDDSEKEAKEAKLDKKDKPKKFEYPHGLTPPM 118

Query: 127 RDARKRRFRREPDLNPELVQRVEKDLLNIM 156
           ++ RKRRFR+ P      ++ VEK++  ++
Sbjct: 119 KNVRKRRFRKTPSKKIAEIEEVEKEVKRLL 148

The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. Each TAF, with the help of a specific activator, is required only for expression of subset of genes and is not universally involved for transcription as are GTFs. TAF7 is involved in the regulation of the transition from PIC assembly to initiation and elongation. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs; the HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. Length = 162

>gnl|CDD|218194 pfam04658, TAFII55_N, TAFII55 protein conserved region

 Score =  152 bits (387), Expect = 6e-48
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 25/156 (16%)

Query: 19  MEEQFILRVPP-SVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77
           +EEQFILR+PP   A+ +   +   + +     +   F +DGR     I    +   L+D
Sbjct: 1   IEEQFILRMPPDEDADFVRNAIESGDFTG----ISFKF-KDGRRAVVKINGVLYAAKLVD 55

Query: 78  LPCVVESFKTYDDCALVKTADIGQMIMVREP-----------------GDSTPDAVEYRH 120
           LP ++ES KT+D   L KTADI QM++V EP                  +  P   EY H
Sbjct: 56  LPTIIESHKTFDRKNLYKTADICQMLLVYEPVSDEEEAKETPPESKKDNEKAPKKYEYPH 115

Query: 121 GLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIM 156
           G+TPP+++ RKRRFR+        ++ VEK++  ++
Sbjct: 116 GITPPLKNVRKRRFRKRVS--KREIEEVEKEVKRLL 149

The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. TAFII55 binds to TAFII250 and inhibits it acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminus of the protein. Length = 157

>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor [Transcription]

 Score = 77.4 bits (190), Expect = 4e-17
 Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 15/147 (10%)

Query: 18  LMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77
           L+E+QFILR+ PS+       L E   S +   + +   +D RS      N  +P  L+D
Sbjct: 71  LIEQQFILRLHPSIQIEHVVDLGE---SGDYSGITIKIKDD-RSAVVTHNNKKYPAILVD 126

Query: 78  LPCVVESFKTYDDCALVKTADIGQMIMVRE---PGDSTPDA-------VEYRHGLTPPMR 127
           LPC++ES K+ D     K ADI QM++  E     +S  +          Y HGL+PP++
Sbjct: 127 LPCIIESNKSMDSKQHYKVADISQMLVALEAVYHENSFLNKHLKKEREYYYLHGLSPPLK 186

Query: 128 DARKRRFRREPDLNP-ELVQRVEKDLL 153
             R RRFR++      E V++   DLL
Sbjct: 187 YVRARRFRKKSSKIEIEEVEKKVDDLL 213

Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PF04658	162	TAFII55_N: TAFII55 protein conserved region; Inter	100.0
KOG4011	330	consensus Transcription initiation factor TFIID, s	100.0
cd08047	162	TAF7 TATA Binding Protein (TBP) Associated Factor	100.0
COG5414	392	TATA-binding protein-associated factor [Transcript	100.0

>PF04658 TAFII55_N: TAFII55 protein conserved region; InterPro: IPR006751 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex

Probab=100.00  E-value=1.6e-60  Score=385.47  Aligned_cols=142  Identities=41%  Similarity=0.721  Sum_probs=123.4

Q ss_pred             ccceeEEecCc-chHHHHHHHHhcCCCCCCCCCeeEEEecCCceEEEEECCeecceeeccCCeeeeeeeeccCcceEEee
Q 030427           19 MEEQFILRVPP-SVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTA   97 (177)
Q Consensus        19 ~EeqfILRlP~-~~a~~lr~~v~~~~~~~~~~~l~i~~~~d~R~~~v~i~~~~y~a~LvDLP~IiEs~KT~D~k~~yKta   97 (177)
                      ||+|||||||| +.|++||++|++|..+. ..+++++| .|+|+|+|+++|+.|+|+|||||||||||||+|+++|||||
T Consensus         1 ~E~q~ILR~p~~~~ad~lr~~i~~~~~~~-~~~I~~~~-~d~R~~~v~i~~~~y~a~LvDLP~IvEs~KT~D~k~~yKta   78 (162)
T PF04658_consen    1 IEEQFILRLPPGEDADRLREAIEEGDINE-KLDIDFKF-KDGRRAVVRIGGQIYSAKLVDLPCIVESHKTLDKKNFYKTA   78 (162)
T ss_pred             CcceEEEecCChhHHHHHHHHHHcCCCCC-CceEEEec-CCCCEEEEEECCEEcceEEeecCceeeEEeecccCeEEEEe
Confidence            79999999999 89999999999997532 12445555 69999999999999999999999999999999999999999


Q ss_pred             ccceeEEecCCCC------------------CCCCcccccCCCCccccccccccccCCCCCChHHHHHHHHHHHHHhcCC
Q 030427           98 DIGQMIMVREPGD------------------STPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGA  159 (177)
Q Consensus        98 DIsQMLvv~~~~~------------------~~p~~~~~~hGiTPPmknvRkRRFRK~~~~~~~~ie~VE~el~~Ll~gg  159 (177)
                      ||||||+|+++.+                  ..+..|+|||||||||||||||||||+... ..++++||+||.+||+  
T Consensus        79 DI~QMLiv~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~hGiTPP~knvrkRRFRk~~~~-~~~i~~vE~ev~~LL~--  155 (162)
T PF04658_consen   79 DISQMLIVYEPIEDEEEAKETDLKEKKKNKEKEDKKFEWPHGITPPMKNVRKRRFRKRKKK-YREIPEVEKEVKRLLR--  155 (162)
T ss_pred             ccceeEEEeccCCCcccccccccccccccccccccccCCCCCCChhhhhHHHhhhccCccc-cccHHHHHHHHHHHHh--
Confidence            9999999998721                  123578999999999999999999999543 5899999999999999  


Q ss_pred             Cccccccccc
Q 030427          160 TVENADILKF  169 (177)
Q Consensus       160 ~~~~~~~~~~  169 (177)
                          .|.+|.
T Consensus       156 ----~D~~A~  161 (162)
T PF04658_consen  156 ----EDAEAV  161 (162)
T ss_pred             ----cchhhc
Confidence                555554

TAFII55 binds to TAFII250 and inhibits its acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminal of the protein [].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005669 transcription factor TFIID complex

>KOG4011 consensus Transcription initiation factor TFIID, subunit TAF7 [Transcription]

Probab=100.00  E-value=9e-60  Score=410.96  Aligned_cols=157  Identities=43%  Similarity=0.662  Sum_probs=145.7

Q ss_pred             CCCCCCCcccceeEEecCcchHHHHHHHHhcCCCCCCCCCeeEEEecCCceEEEEECCeecceeeccCCeeeeeeeeccC
Q 030427           11 GNKFNRALMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDD   90 (177)
Q Consensus        11 ~~~~~~~~~EeqfILRlP~~~a~~lr~~v~~~~~~~~~~~l~i~~~~d~R~~~v~i~~~~y~a~LvDLP~IiEs~KT~D~   90 (177)
                      +..+++|+||+|||||+||+++.+++++++++.   .+++|+|.|++|+|+|+|+|||+.|+|+|||||||||||||+|+
T Consensus        14 a~~ed~~e~EsqfILRvPp~~~~~v~~~~~~~~---~~~~l~i~~~~D~R~~vV~i~n~~l~akLvDLPtVvEs~KT~D~   90 (330)
T KOG4011|consen   14 AEAEDDPEMESQFILRVPPDIACRVDRAASEDG---DKDELSIKLKPDGRHAVVRINNQLLPAKLVDLPTVVESNKTLDN   90 (330)
T ss_pred             cccccchhhhhheeeecCHHHHHHHHHHhhccc---ccccceeeeccCCceeEEEECCEEccceeeccchhhhhhhcccc
Confidence            344889999999999999999999999998874   67899999999999999999999999999999999999999999


Q ss_pred             cceEEeeccceeEEecCC-----CCCCC-----------CcccccCCCCccccccccccccCCCCCChHHHHHHHHHHHH
Q 030427           91 CALVKTADIGQMIMVREP-----GDSTP-----------DAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLN  154 (177)
Q Consensus        91 k~~yKtaDIsQMLvv~~~-----~~~~p-----------~~~~~~hGiTPPmknvRkRRFRK~~~~~~~~ie~VE~el~~  154 (177)
                      |+|||||||||||||+.+     ++..|           ..|.|||||||||||||||||||++..++-++.+||++|.+
T Consensus        91 k~lyKtADIsQMLvc~~~~~e~ie~~~p~~~~k~~~~k~k~y~y~HGiTPPmKnvRkRRFRK~~~kk~~e~~eVEkevkr  170 (330)
T KOG4011|consen   91 KTLYKTADISQMLVCTEDVEEGIEDEDPDAARKKAKEKEKKYIYPHGITPPMKNVRKRRFRKTKKKKPMEVPEVEKEVKR  170 (330)
T ss_pred             ccceeecchheeEEEecCccccccccChhhHHHhhhhhhhceecccCCCcchhHHHHHHhhhccccCCCchHHHHHHHHH
Confidence            999999999999999988     45555           57999999999999999999999976666689999999999


Q ss_pred             HhcCCCcccccccccccceeee
Q 030427          155 IMTGATVENADILKFKSNFSIV  176 (177)
Q Consensus       155 Ll~gg~~~~~~~~~~~s~~~~~  176 (177)
                      ||.      .|.+|.+-.|+||
T Consensus       171 LLr------~D~eA~Sv~~eiv  186 (330)
T KOG4011|consen  171 LLR------ADNEAVSVRWEIV  186 (330)
T ss_pred             HHh------hhhhhhhhheeee
Confidence            999      8999999999997

>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=100.00  E-value=5.7e-59  Score=374.98  Aligned_cols=149  Identities=43%  Similarity=0.772  Sum_probs=132.7

Q ss_pred             cceeEEecCcchHHHHHHHHhcCCCCCCCCCeeEEEecCCceEEEEECCeecceeeccCCeeeeeeeeccCcceEEeecc
Q 030427           20 EEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADI   99 (177)
Q Consensus        20 EeqfILRlP~~~a~~lr~~v~~~~~~~~~~~l~i~~~~d~R~~~v~i~~~~y~a~LvDLP~IiEs~KT~D~k~~yKtaDI   99 (177)
                      |+||||||||+.|++||+++++|..+..  .+.+.+..|+|+|+|+|+|+.|+|+|||||||||||||+|+++|||||||
T Consensus         1 E~q~ILR~p~~~a~~vr~~i~~~~~~~~--~~~~~~~~d~R~~~v~v~~~~y~a~LvdLPtiiEs~KT~D~k~~yKtaDI   78 (162)
T cd08047           1 EEQFILRLPPDVADRLRKAIEEGDSNEK--LLSITLFEDSRRAVVRINGQKYPAKLVDLPTIIESHKTLDKKNLYKTADI   78 (162)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHcCCCccc--ccccccCCCCcEEEEEECCEEcceEEeecCceeeeeeccccCceEEecCh
Confidence            8999999999999999999999975321  13455567999999999999999999999999999999999999999999


Q ss_pred             ceeEEecCCCCCC-------------CCcccccCCCCccccccccccccCCCCCChHHHHHHHHHHHHHhcCCCcccccc
Q 030427          100 GQMIMVREPGDST-------------PDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADI  166 (177)
Q Consensus       100 sQMLvv~~~~~~~-------------p~~~~~~hGiTPPmknvRkRRFRK~~~~~~~~ie~VE~el~~Ll~gg~~~~~~~  166 (177)
                      ||||+|+++.++.             +..++|||||||||+|||+|||||++.....++++||++|.+||+      .|.
T Consensus        79 ~QMliv~~~~~~~~~~~~~~~~~~~~~~~~~~~hGLTPP~~~vrkRrfrk~~~~~~~~i~~vEkev~~ll~------~d~  152 (162)
T cd08047          79 SQMLIVYEPDDSEKEAKEAKLDKKDKPKKFEYPHGLTPPMKNVRKRRFRKTPSKKIAEIEEVEKEVKRLLK------EDT  152 (162)
T ss_pred             hhEEEEecCCCchhhhhhccccccccccccccCCCCCcCchhhhhcccccccccccchHHHHHHHHHHHHH------hhh
Confidence            9999999886531             357899999999999999999999976556669999999999999      788


Q ss_pred             cccccceeee
Q 030427          167 LKFKSNFSIV  176 (177)
Q Consensus       167 ~~~~s~~~~~  176 (177)
                      +|.++.|+++
T Consensus       153 ~a~~~~~e~~  162 (162)
T cd08047         153 EAVSVEYEVI  162 (162)
T ss_pred             hhcceeeeeC
Confidence            9999999875

The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving

>COG5414 TATA-binding protein-associated factor [Transcription]

Probab=100.00  E-value=1.5e-46  Score=327.99  Aligned_cols=154  Identities=31%  Similarity=0.490  Sum_probs=135.5

Q ss_pred             ccCCCCCCCCcccceeEEecCcch-HHHHHHHHhcCCCCCCCCCeeEEEecCCceEEEEECCeecceeeccCCeeeeeee
Q 030427            8 FFSGNKFNRALMEEQFILRVPPSV-AERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFK   86 (177)
Q Consensus         8 ~~~~~~~~~~~~EeqfILRlP~~~-a~~lr~~v~~~~~~~~~~~l~i~~~~d~R~~~v~i~~~~y~a~LvDLP~IiEs~K   86 (177)
                      ...|+-++||.||+|||||+||++ +++|++++.+|    ..++++|+|+ |.|+|+|++||+.|+|+||||||||||.|
T Consensus        61 SEASD~EdD~~iE~q~ILRl~p~~~~e~V~~~~esG----~~s~I~ik~k-d~R~aVvt~N~~~Y~ailVdLPciIEsnK  135 (392)
T COG5414          61 SEASDIEDDPLIEQQFILRLHPSIQIEHVVDLGESG----DYSGITIKIK-DDRSAVVTHNNKKYPAILVDLPCIIESNK  135 (392)
T ss_pred             cccccccccchhhhceeeecCCccchHHHHHHhhcC----CccCceEEec-cCceEEEEECCcccceeEeecceeEeccc
Confidence            445778899999999999999984 89999999997    4678999999 99999999999999999999999999999


Q ss_pred             eccCcceEEeeccceeEE----ecCCCCCC------CCcccccCCCCccccccccccccCCCCCChHHHHHHHHHHHHHh
Q 030427           87 TYDDCALVKTADIGQMIM----VREPGDST------PDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIM  156 (177)
Q Consensus        87 T~D~k~~yKtaDIsQMLv----v~~~~~~~------p~~~~~~hGiTPPmknvRkRRFRK~~~~~~~~ie~VE~el~~Ll  156 (177)
                      |+|+|++||+||||||||    |+.+....      ...|.|+|||||||+|||.|||||+  .++.+|+.||++|.+||
T Consensus       136 S~D~k~~~K~aDisqmlvA~E~v~hensflN~~lk~~~~y~y~hGlspPl~~Vr~rRFRkk--~s~~eIe~VEk~Vd~LL  213 (392)
T COG5414         136 SMDSKQHYKVADISQMLVALEAVYHENSFLNKHLKKEREYYYLHGLSPPLKYVRARRFRKK--SSKIEIEEVEKKVDDLL  213 (392)
T ss_pred             ccchhhhHhHhhHHHHHHHHhhhcccchhhHHHHHHHhhhhccccCCchhHHHHHHHHHhh--cCcchHHHHHHHHHHHH
Confidence            999999999999999999    44332222      1368999999999999999999999  68888999999999999


Q ss_pred             cCCCccccccccccccee
Q 030427          157 TGATVENADILKFKSNFS  174 (177)
Q Consensus       157 ~gg~~~~~~~~~~~s~~~  174 (177)
                      +      +|.-|++-.|+
T Consensus       214 ~------~D~~Aesvs~~  225 (392)
T COG5414         214 E------KDMKAESVSVV  225 (392)
T ss_pred             H------HhhhhhhhHHH
Confidence            9      77777665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00