Citrus Sinensis ID: 030448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHcccEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHccccEEEEccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdtcpsiknillldsEGKRVAVKYysndwptnsaKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFfvtggedeNELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANViagkvashsvdvgaplseQTISQALATAREHLTRSLLK
Flexible Loop (DISEMBL)
mdtcpsiknillldsegKRVAVKYYsndwptnsakEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK
Low Complexity Region (SEG)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAlenldlillcldeiVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK
Disordered region (IsUnstruct)
******IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDV**************************
Disordered Region (DISOPRED)
*DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIA***********************ATAREHLTRSLLK
Disordered Region (DISEMBL)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATARE********
Disordered Region (DISPRO)
**TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q940S5	177	Coatomer subunit zeta-1 O	yes	no	1.0	1.0	0.796	3e-80
Q6Z844	182	Coatomer subunit zeta-2 O	yes	no	0.994	0.967	0.778	4e-78
Q84LG4	179	Coatomer subunit zeta-2 O	no	no	0.988	0.977	0.777	2e-77
Q8H1F4	181	Coatomer subunit zeta-3 O	no	no	0.988	0.966	0.765	7e-77
Q9MAX5	177	Coatomer subunit zeta-1 O	no	no	0.994	0.994	0.732	2e-73
Q5NA06	177	Coatomer subunit zeta-3 O	no	no	0.994	0.994	0.670	2e-68
P35604	177	Coatomer subunit zeta-1 O	yes	no	0.937	0.937	0.470	8e-39
Q5R5F2	177	Coatomer subunit zeta-1 O	yes	no	0.937	0.937	0.465	3e-38
P61924	177	Coatomer subunit zeta-1 O	yes	no	0.937	0.937	0.465	3e-38
P61923	177	Coatomer subunit zeta-1 O	yes	no	0.937	0.937	0.465	3e-38

>sp|Q940S5|COPZ1_ARATH Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1

 Score =  297 bits (760), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/177 (79%), Positives = 158/177 (89%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  L
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EAL+NLDLI 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           L  DEI+DGGI+LETDANVIAGK   +S D  APLSEQTISQALATAREHLTRSL+K
Sbjct: 121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1

 Score =  290 bits (741), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 161/176 (91%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           ++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +
Sbjct: 7   ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
           G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+ ALENLDLILL
Sbjct: 67  GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILL 126

Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           C+DEIVDGGIILETDAN IAGKVA+++VD  AP SEQTISQALATAREHL RSLLK
Sbjct: 127 CIDEIVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 182

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1

 Score =  288 bits (736), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/175 (77%), Positives = 154/175 (88%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+
Sbjct: 4   DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K EALENLDLI L
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123

Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
           CLDE+VD G++LETD NVIAGKVA  S +    LSEQT++QALATAREHL RSLL
Sbjct: 124 CLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1

 Score =  285 bits (730), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 134/175 (76%), Positives = 154/175 (88%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EALENLDLI L
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
           CLDE+VD G++LETDANVIAGKVA  S +    LSEQT++QALATAREHL RSLL
Sbjct: 126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 154/176 (87%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK  A  EAEI M 
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+ ALENLDLIL
Sbjct: 61  DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLIL 120

Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
           LCLDEIVDGGI+LET+ +VIA KV++H ++    L+EQTI QAL TAREHLT+SLL
Sbjct: 121 LCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTIVQALTTAREHLTKSLL 176

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1

 Score =  258 bits (658), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 146/176 (82%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M 
Sbjct: 1   MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           +   +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+  LLR  V ++ ALENLDLI 
Sbjct: 61  DSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIF 120

Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
           LCLDE+VDGGI+LETDA  I  KV+ H ++    L+EQ +S ALATAREH  RS+ 
Sbjct: 121 LCLDEVVDGGIVLETDAKAILEKVSGHGLEGSGSLTEQKLSSALATAREHFARSIF 176

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P35604|COPZ1_BOVIN Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2

 Score =  159 bits (402), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 119/172 (69%), Gaps = 6/172 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+  LEN++ + L +DE
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           IVDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Bos taurus (taxid: 9913)

>sp|Q5R5F2|COPZ1_PONAB Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1

 Score =  157 bits (397), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 118/172 (68%), Gaps = 6/172 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+  LEN++ + L +DE
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           IVDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Pongo abelii (taxid: 9601)

>sp|P61924|COPZ1_MOUSE Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1

 Score =  157 bits (397), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 118/172 (68%), Gaps = 6/172 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+  LEN++ + L +DE
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           IVDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Mus musculus (taxid: 10090)

>sp|P61923|COPZ1_HUMAN Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1

 Score =  157 bits (397), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 118/172 (68%), Gaps = 6/172 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+  LEN++ + L +DE
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           IVDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
225463398	177	PREDICTED: coatomer subunit zeta-1-like	1.0	1.0	0.898	5e-90
297740639	200	unnamed protein product [Vitis vinifera]	1.0	0.885	0.898	6e-90
449433700	177	PREDICTED: coatomer subunit zeta-2-like	0.994	0.994	0.869	3e-86
225442214	183	PREDICTED: coatomer subunit zeta-2 [Viti	0.983	0.950	0.867	3e-85
351727329	179	nonclathrin coat protein zeta2-COP [Glyc	0.994	0.983	0.857	2e-84
351727975	179	uncharacterized protein LOC100527022 [Gl	0.994	0.983	0.857	6e-84
350534688	184	nonclathrin coat protein zeta1-COP [Sola	0.994	0.956	0.835	8e-84
255627919	178	unknown [Glycine max]	0.988	0.983	0.852	1e-82
350534792	183	nonclathrin coat protein zeta2-COP [Sola	0.988	0.956	0.828	9e-82
449505976	227	PREDICTED: coatomer subunit zeta-1-like,	0.954	0.744	0.869	2e-81

>gi|225463398|ref|XP_002273766.1| PREDICTED: coatomer subunit zeta-1-like isoform 1 [Vitis vinifera]

 Score =  335 bits (858), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 159/177 (89%), Positives = 171/177 (96%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY +DWPTN+AKE FEK+VF+KTQKTNARTEAEIAM 
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYCDDWPTNNAKETFEKSVFSKTQKTNARTEAEIAMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           E N++VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120

Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           LCLDEI+DGGI+LETDANVIAGKVASHS+D GAPLSEQTISQALATAREHL RSLLK
Sbjct: 121 LCLDEIIDGGIVLETDANVIAGKVASHSLDSGAPLSEQTISQALATAREHLARSLLK 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740639|emb|CBI30821.3| unnamed protein product [Vitis vinifera]

 Score =  334 bits (857), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 159/177 (89%), Positives = 171/177 (96%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY +DWPTN+AKE FEK+VF+KTQKTNARTEAEIAM 
Sbjct: 24  MESCPSVKNILLLDSEGKRVAVKYYCDDWPTNNAKETFEKSVFSKTQKTNARTEAEIAMF 83

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           E N++VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL
Sbjct: 84  ENNIVVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 143

Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           LCLDEI+DGGI+LETDANVIAGKVASHS+D GAPLSEQTISQALATAREHL RSLLK
Sbjct: 144 LCLDEIIDGGIVLETDANVIAGKVASHSLDSGAPLSEQTISQALATAREHLARSLLK 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433700|ref|XP_004134635.1| PREDICTED: coatomer subunit zeta-2-like [Cucumis sativus]

 Score =  322 bits (826), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/176 (86%), Positives = 167/176 (94%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           MD+CPSIKNILLLDSEGKRVAVKYYS++WPTNSA+E FEKAVF+KTQK+NAR EAEIAM 
Sbjct: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDEWPTNSARETFEKAVFSKTQKSNARNEAEIAMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           E N+++YKFVQDLHFFVTGGE ENELILATVLQGFFDAVGLLLRG+V+KKEALENLDLIL
Sbjct: 61  ENNIVIYKFVQDLHFFVTGGEYENELILATVLQGFFDAVGLLLRGHVEKKEALENLDLIL 120

Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
           LCLDEIVDGGI+LETD NVIAGKVA+ S+D  APLSEQTISQALATAREHLTRSLL
Sbjct: 121 LCLDEIVDGGIVLETDGNVIAGKVATQSIDSSAPLSEQTISQALATAREHLTRSLL 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442214|ref|XP_002277175.1| PREDICTED: coatomer subunit zeta-2 [Vitis vinifera] gi|297743043|emb|CBI35910.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (817), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 151/174 (86%), Positives = 166/174 (95%)

Query: 4   CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
           CPSIKNILLLDSEGKRVAVKYYS+DWPTN+AK AFEK+VFTKTQKTNARTEAEIAM E N
Sbjct: 10  CPSIKNILLLDSEGKRVAVKYYSDDWPTNAAKLAFEKSVFTKTQKTNARTEAEIAMFENN 69

Query: 64  VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCL 123
           V++YKF+QDLHFFVTGG+DENELILATVLQGF DAV LLLR N+DK+EALENLDLILLCL
Sbjct: 70  VVIYKFIQDLHFFVTGGDDENELILATVLQGFSDAVALLLRNNIDKREALENLDLILLCL 129

Query: 124 DEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           DEIVDGG+ILETDA+VI GKVA+HS+D GAPLSEQT++QALATAREHLTRSLLK
Sbjct: 130 DEIVDGGMILETDASVIEGKVAAHSIDAGAPLSEQTLTQALATAREHLTRSLLK 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727329|ref|NP_001236901.1| nonclathrin coat protein zeta2-COP [Glycine max] gi|7363244|dbj|BAA93004.1| nonclathrin coat protein zeta2-COP [Glycine max]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 165/176 (93%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           +TCPS+KN+LLLDS+GKRVAVKY+S DWPTNSAKE FEK VF KTQKTNARTEAEIAM E
Sbjct: 4   ETCPSVKNVLLLDSDGKRVAVKYFSEDWPTNSAKENFEKVVFNKTQKTNARTEAEIAMFE 63

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N+++YKFVQDLHFFVTGG+ ENELILATVLQ FFD+VGLLLRGNVDKKEALENLDLILL
Sbjct: 64  NNIVLYKFVQDLHFFVTGGDYENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILL 123

Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           C+DEIVDGGIILETD NVIAGKVAS+S+D GAPLSEQT+SQALATAREHL RSLLK
Sbjct: 124 CIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQALATAREHLARSLLK 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727975|ref|NP_001237435.1| uncharacterized protein LOC100527022 [Glycine max] gi|255631384|gb|ACU16059.1| unknown [Glycine max]

 Score =  315 bits (806), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 164/176 (93%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           +TCPS+KN+LLLDS+GKRVAVKY+S DW TNSAKE FEK VF KTQKTNARTEAEIAM E
Sbjct: 4   ETCPSVKNVLLLDSDGKRVAVKYFSEDWATNSAKENFEKVVFNKTQKTNARTEAEIAMFE 63

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N++VYKFVQDLHFFVTGG+ ENELILATVLQ FFD+VGLLLRGNVDKKEALENLDLILL
Sbjct: 64  NNIVVYKFVQDLHFFVTGGDYENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILL 123

Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           C+DEIVDGGIILETD NVIAGKVAS+S+D GAPLSEQT+SQALATAREHL RSLLK
Sbjct: 124 CIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQALATAREHLARSLLK 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534688|ref|NP_001233898.1| nonclathrin coat protein zeta1-COP [Solanum lycopersicum] gi|7259352|dbj|BAA92781.1| nonclathrin coat protein zeta1-COP [Solanum lycopersicum]

 Score =  314 bits (805), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 147/176 (83%), Positives = 166/176 (94%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK AFEK++FTKTQKTNARTEAEI M E
Sbjct: 9   DSCPVVKNILLLDSEGKRVAVKYYSDDWPTNNAKVAFEKSIFTKTQKTNARTEAEITMFE 68

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N+IVYKFVQDLHFFVTGG+DENEL+LATVLQGF+DAV LLLR NVD++EALENLDLILL
Sbjct: 69  NNIIVYKFVQDLHFFVTGGDDENELVLATVLQGFYDAVTLLLRNNVDQREALENLDLILL 128

Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           CLDEIVDGG++LETD N IAGKV+SH++D GAPLSEQTI+QALATAREHLTRSLL+
Sbjct: 129 CLDEIVDGGMVLETDGNTIAGKVSSHNMDDGAPLSEQTITQALATAREHLTRSLLR 184

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255627919|gb|ACU14304.1| unknown [Glycine max]

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/176 (85%), Positives = 164/176 (93%), Gaps = 1/176 (0%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           +TCPS+KN+LLLDS+GKRVAVKY+S DWPTNSAKE FEK VF KTQKTNARTE EIAM E
Sbjct: 4   ETCPSVKNVLLLDSDGKRVAVKYFSEDWPTNSAKENFEKVVFNKTQKTNARTE-EIAMFE 62

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N+++YKFVQDLHFFVTGG+ ENELILATVLQ FFD+VGLLLRGNVDKKEALENLDLILL
Sbjct: 63  NNIVLYKFVQDLHFFVTGGDYENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILL 122

Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           C+DEIVDGGIILETD NVIAGKVAS+S+D GAPLSEQT+SQALATAREHL RSLLK
Sbjct: 123 CIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQALATAREHLARSLLK 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534792|ref|NP_001233904.1| nonclathrin coat protein zeta2-COP [Solanum lycopersicum] gi|7259354|dbj|BAA92782.1| nonclathrin coat protein zeta2-COP [Solanum lycopersicum]

 Score =  307 bits (787), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 145/175 (82%), Positives = 165/175 (94%)

Query: 3   TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEG 62
           +CP +KNILLLDSEGKRVAVKYY +DWPT SAK AFEK++FTKTQKTNARTEAEIAM + 
Sbjct: 9   SCPVVKNILLLDSEGKRVAVKYYCDDWPTYSAKLAFEKSIFTKTQKTNARTEAEIAMFDS 68

Query: 63  NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLC 122
           N++VYKFVQDLHFFVTGG+DENELILATVLQGF+DAV LLLR NV+++EALENLDLILLC
Sbjct: 69  NIVVYKFVQDLHFFVTGGDDENELILATVLQGFYDAVTLLLRSNVEQREALENLDLILLC 128

Query: 123 LDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
           LDEIVDGG+ILETD +VIAGKVASH++D G+P+SEQTISQALATAREHLTRSLL+
Sbjct: 129 LDEIVDGGMILETDGSVIAGKVASHNMDDGSPISEQTISQALATAREHLTRSLLR 183

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505976|ref|XP_004162619.1| PREDICTED: coatomer subunit zeta-1-like, partial [Cucumis sativus]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/169 (86%), Positives = 160/169 (94%)

Query: 8   KNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVY 67
           KNILLLDSEGKRVAVKYYS++WPTNSA+E FEKAVF+KTQK+NAR EAEIAM E N+++Y
Sbjct: 58  KNILLLDSEGKRVAVKYYSDEWPTNSARETFEKAVFSKTQKSNARNEAEIAMFENNIVIY 117

Query: 68  KFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIV 127
           KFVQDLHFFVTGGE ENELILATVLQGFFDAVGLLLRG+V+KKEALENLDLILLCLDEIV
Sbjct: 118 KFVQDLHFFVTGGEYENELILATVLQGFFDAVGLLLRGHVEKKEALENLDLILLCLDEIV 177

Query: 128 DGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
           DGGI+LETD NVIAGKVA+ S+D  APLSEQTISQALATAREHLTRSLL
Sbjct: 178 DGGIVLETDGNVIAGKVATQSIDSSAPLSEQTISQALATAREHLTRSLL 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2206026	177	AT1G60970 [Arabidopsis thalian	1.0	1.0	0.740	2.5e-65
TAIR|locus:2133569	181	AT4G08520 [Arabidopsis thalian	0.988	0.966	0.697	2.4e-60
UNIPROTKB|P35604	177	COPZ1 "Coatomer subunit zeta-1	0.937	0.937	0.430	6.9e-31
ZFIN|ZDB-GENE-000406-6	198	copz1 "coatomer protein comple	0.937	0.838	0.412	1.8e-30
UNIPROTKB|E2QZL1	177	COPZ1 "Uncharacterized protein	0.937	0.937	0.424	2.3e-30
UNIPROTKB|F6Y3Y5	186	COPZ1 "Uncharacterized protein	0.937	0.892	0.424	2.3e-30
UNIPROTKB|J9PAP6	177	COPZ1 "Uncharacterized protein	0.937	0.937	0.424	2.3e-30
UNIPROTKB|F8VWL5	185	COPZ1 "Coatomer subunit zeta-1	0.937	0.897	0.424	2.3e-30
UNIPROTKB|P61923	177	COPZ1 "Coatomer subunit zeta-1	0.937	0.937	0.424	2.3e-30
UNIPROTKB|F2Z5S7	177	COPZ1 "Uncharacterized protein	0.937	0.937	0.424	2.3e-30

TAIR|locus:2206026 AT1G60970 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 131/177 (74%), Positives = 147/177 (83%)

Query:     1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
             M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  L
Sbjct:     1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query:    61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXX 120
             E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EA        
Sbjct:    61 ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query:   121 XXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
                   +DGGI+LETDANVIAGK   +S D  APLSEQTISQALATAREHLTRSL+K
Sbjct:   121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2133569 AT4G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 122/175 (69%), Positives = 141/175 (80%)

Query:     2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
             D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct:     6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query:    62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXX 121
              N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EA         
Sbjct:    66 SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query:   122 XXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
                  VD G++LETDANVIAGKVA  S +    LSEQT++QALATAREHL RSLL
Sbjct:   126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P35604 COPZ1 "Coatomer subunit zeta-1" [Bos taurus (taxid:9913)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 74/172 (43%), Positives = 108/172 (62%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
              VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

GO:0003674 "molecular_function" evidence=ND

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-000406-6 copz1 "coatomer protein complex, subunit zeta 1" [Danio rerio (taxid:7955)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 71/172 (41%), Positives = 109/172 (63%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K +L++D++G+R+  KYY + +PT   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    33 TVKAVLIMDNDGERLYAKYYDDTYPTVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 88

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L +VL   FD++  +LR NV+K+               
Sbjct:    89 VYKSNIDLYFYVIGSSHENELMLMSVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 148

Query:   126 XVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
              VDGG+ILE+D   +  +VA    DV  PL+EQT++Q L +A+E +  SLL+
Sbjct:   149 IVDGGVILESDPQQVVHRVALRGDDV--PLTEQTVTQVLQSAKEQIKWSLLR 198

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IMP

UNIPROTKB|E2QZL1 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 73/172 (42%), Positives = 107/172 (62%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
              VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F6Y3Y5 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 73/172 (42%), Positives = 107/172 (62%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    21 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 76

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    77 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 136

Query:   126 XVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
              VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   137 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 186

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|J9PAP6 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 73/172 (42%), Positives = 107/172 (62%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
              VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F8VWL5 COPZ1 "Coatomer subunit zeta-1" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 73/172 (42%), Positives = 107/172 (62%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    20 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 75

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    76 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 135

Query:   126 XVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
              VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   136 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 185

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|P61923 COPZ1 "Coatomer subunit zeta-1" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 73/172 (42%), Positives = 107/172 (62%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
              VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS;IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS;IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

UNIPROTKB|F2Z5S7 COPZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 73/172 (42%), Positives = 107/172 (62%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
              VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAX5	COPZ1_ORYSJ	No assigned EC number	0.7329	0.9943	0.9943	no	no
O74891	COPZ_SCHPO	No assigned EC number	0.3457	0.9661	0.9	yes	no
Q84LG4	COPZ2_ARATH	No assigned EC number	0.7771	0.9887	0.9776	no	no
Q54HD4	COPZA_DICDI	No assigned EC number	0.3657	0.9209	0.9314	yes	no
P35604	COPZ1_BOVIN	No assigned EC number	0.4709	0.9378	0.9378	yes	no
Q6Z844	COPZ2_ORYSJ	No assigned EC number	0.7784	0.9943	0.9670	yes	no
P61923	COPZ1_HUMAN	No assigned EC number	0.4651	0.9378	0.9378	yes	no
P61924	COPZ1_MOUSE	No assigned EC number	0.4651	0.9378	0.9378	yes	no
O17901	COPZ_CAEEL	No assigned EC number	0.4086	0.9717	0.9347	yes	no
Q940S5	COPZ1_ARATH	No assigned EC number	0.7966	1.0	1.0	yes	no
Q8H1F4	COPZ3_ARATH	No assigned EC number	0.7657	0.9887	0.9668	no	no
Q5R5F2	COPZ1_PONAB	No assigned EC number	0.4651	0.9378	0.9378	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00003398001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (183 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036398001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (889 aa)					•	•	•		0.680
	GSVIVG00030145001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (568 aa)					•	•	•		0.487

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
COG5541	187	COG5541, RET3, Vesicle coat complex COPI, zeta sub	1e-25
pfam01217	142	pfam01217, Clat_adaptor_s, Clathrin adaptor comple	4e-19
COG5030	152	COG5030, APS2, Clathrin adaptor complex, small sub	6e-06

>gnl|CDD|227828 COG5541, RET3, Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 96.5 bits (240), Expect = 1e-25
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 15/183 (8%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPT-------NSAK--EAFEKAVFTKTQKTNARTEAE 56
            ++ +L+LDS+G+R+  KYY     +       NS K  + FEK +  KT K        
Sbjct: 7   DVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKD----RES 62

Query: 57  IAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENL 116
           I M    +++ K + D+  ++    +ENE  L  V      A+ L+++   DK+   EN 
Sbjct: 63  ILMFYDRLVMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENY 122

Query: 117 DLILLCLDEIVDGGIILETDANVIAGKVASHSVD--VGAPLSEQTISQALATAREHLTRS 174
           D I+L +DE +D G+ILET ++ IA +V               +  +  L  A + L+  
Sbjct: 123 DQIVLLVDETIDEGVILETKSDEIADRVPKPPNFEGQDGMKVPRGFASFLHKATKKLSER 182

Query: 175 LLK 177
             K
Sbjct: 183 SNK 185

Length = 187

>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain

 Score = 78.6 bits (194), Expect = 4e-19
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 8/141 (5%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKE--AFEKAVFTKTQKTNARTEAEIAMLEGNV 64
           IK IL+ + +GK    K+Y+   P +  ++    E+     + +      +         
Sbjct: 2   IKAILIFNRQGKPRLAKWYT---PYSDPEQQKLIEQIYALISARKP--KMSNFIEFNDLK 56

Query: 65  IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLD 124
           ++YK    L+F V   + +NELI+  ++  F +++     GNV + + + N + + L LD
Sbjct: 57  VIYKRYATLYFVVIVDDQDNELIILELIHRFVESLDRYF-GNVCELDLIFNFEKVYLILD 115

Query: 125 EIVDGGIILETDANVIAGKVA 145
           E+V GG ILET  N +  +VA
Sbjct: 116 EMVMGGEILETSKNEVLHRVA 136

Length = 142

>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 9/152 (5%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
            IK +L+ + +GK   VK+Y+   P +  ++A   A   +        E+     +   I
Sbjct: 1   MIKFVLIFNRQGKPRLVKWYT---PVSDPEQAKLIADIYELISARKPKESNFIEGKNEKI 57

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VY+    L+F      D+NELI+  ++  F + +     GNV + + + N   +   LDE
Sbjct: 58  VYRRYATLYFVFGVDNDDNELIILELIHNFVEILDRFF-GNVCELDLIFNFQKVYAILDE 116

Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSE 157
           ++ GG I+E+  N +        V      S 
Sbjct: 117 MILGGEIIESSKNEVL-----EHVYALDAEST 143

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	100.0
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.97
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	99.97
KOG0936	182	consensus Clathrin adaptor complex, small subunit	99.96
KOG0935	143	consensus Clathrin adaptor complex, small subunit	99.96
KOG0934	145	consensus Clathrin adaptor complex, small subunit	99.95
KOG0938	446	consensus Adaptor complexes medium subunit family	99.93
KOG0937	424	consensus Adaptor complexes medium subunit family	99.87
KOG2740	418	consensus Clathrin-associated protein medium chain	99.83
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	98.45
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	97.56
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	97.08
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	97.02
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	92.25
KOG0997	523	consensus Uncharacterized conserved protein Sand [	91.05
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	87.35
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	84.45
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	82.08

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-40  Score=247.38  Aligned_cols=170  Identities=56%  Similarity=0.882  Sum_probs=161.5

Q ss_pred             CCccceeeEEEEcCCCCEeEEecCCCCCCC-hhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEec
Q 030448            2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPT-NSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGG   80 (177)
Q Consensus         2 ~~~~mI~~i~iln~~G~~il~k~Y~~~~~~-~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~   80 (177)
                      -|++.+++++|+|++|+|+++|||.+++++ .++|++||+.+|.|+.+.    +++|..++|..+||+..-||+|+++|.
T Consensus         4 ~sly~vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~kt----~~eI~~ldg~~vvYk~~~Dl~fyv~G~   79 (175)
T KOG3343|consen    4 LSLYTVKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSKT----ESEILLLDGNTVVYKSVIDLHFYVVGS   79 (175)
T ss_pred             cchhhhheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhcccccc----cceeEEecCcEEEEEecccEEEEEecC
Confidence            478899999999999999999999998887 789999999999997763    479999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcCCCCCCChhhH
Q 030448           81 EDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTI  160 (177)
Q Consensus        81 ~~eNel~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~~~~~~~~~~~  160 (177)
                      .+|||+++.++|+++++++...++++.+++.+++|+|.+++++||+||+|+|+||||+.|..|+..++.+.  ++++|..
T Consensus        80 ~~ENEl~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~~~~~--~~~eq~~  157 (175)
T KOG3343|consen   80 EEENELMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALRPTDE--PLSEQSV  157 (175)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccCCCCc--chHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986  7889999


Q ss_pred             HHH-HHHHHHHHHHHhhC
Q 030448          161 SQA-LATAREHLTRSLLK  177 (177)
Q Consensus       161 ~~a-~~~a~~~~~~~l~~  177 (177)
                      .+. +.+||+++..++++
T Consensus       158 ~~~~~q~A~eq~k~~llk  175 (175)
T KOG3343|consen  158 AQGFLQSAKEQIKWSLLK  175 (175)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999 99999999999875

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=1.1e-36  Score=229.64  Aligned_cols=139  Identities=40%  Similarity=0.635  Sum_probs=123.1

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ||+|++|+|++|+++++|||++.  +.++++.+.+++.+++..++.. .+|++.++++.++|++++||||+++++.++||
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNe   77 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDV--SEEERQKLFEKFIKKKSSRNSK-QSPIFEHDNYRIVYKRYSDLYFVVVGDENENE   77 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTS--TSHHHHHHHHHHHHHHHTSSSS-STSEEEETTEEEEEEEETTEEEEEEESSTSBH
T ss_pred             CEEEEEEEcCCCCEEEehhcCCc--cHHHHHHHHHHHHHHHHhcccc-cceeeecccceeeeEeeccEEEEEEeecccch
Confidence            89999999999999999999764  4566677777777777666533 37999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCC
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHS  148 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~  148 (177)
                      ++++++|++++++|+.||++ +++.++++||+.+|++||||+|+|+|++||++.|++|+.+++
T Consensus        78 l~~~e~l~~~v~~l~~~~~~-v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~  139 (141)
T PF01217_consen   78 LLLLEFLHRLVEVLDDYFGN-VSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQD  139 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS--SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhhhhhhhhcc-ccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhh
Confidence            99999999999999999995 677789999999999999999999999999999999998875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.6e-31  Score=198.97  Aligned_cols=170  Identities=29%  Similarity=0.464  Sum_probs=154.4

Q ss_pred             CccceeeEEEEcCCCCEeEEecCCCC---------CCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcE
Q 030448            3 TCPSIKNILLLDSEGKRVAVKYYSND---------WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDL   73 (177)
Q Consensus         3 ~~~mI~~i~iln~~G~~il~k~Y~~~---------~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl   73 (177)
                      |+..|.|++|+|++|++|+.|||.|.         +.+.++++.||..+++|+.+..    .+|..+++..++|+++.|+
T Consensus         4 sLy~v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~~----~~Il~f~d~lV~~k~~~dv   79 (187)
T COG5541           4 SLYDVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDR----ESILMFYDRLVMCKRLDDV   79 (187)
T ss_pred             chheeeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcCc----cceeeEcceeeeeeeehhE
Confidence            47789999999999999999999874         2334578999999999876654    5899999999999999999


Q ss_pred             EEEEEecCCccHHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCC-cCC-
Q 030448           74 HFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHS-VDV-  151 (177)
Q Consensus        74 ~~~~v~~~~eNel~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~-~~~-  151 (177)
                      .+++++.-++||.++.+.++.|..+|..+++.+.+++.+.+|||.+.+++||.+|+|+|++|+++.|++|+..++ .++ 
T Consensus        80 ~~yiv~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~rv~K~p~~E~q  159 (187)
T COG5541          80 LLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPKPPNFEGQ  159 (187)
T ss_pred             EEEEecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHhCCCCCCcchh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999855 454 


Q ss_pred             -CCCCChhhHHHHHHHHHHHHHHHhhC
Q 030448          152 -GAPLSEQTISQALATAREHLTRSLLK  177 (177)
Q Consensus       152 -~~~~~~~~~~~a~~~a~~~~~~~l~~  177 (177)
                       .++. |+||.++|.+||+++..++++
T Consensus       160 ~~~~~-~~GF~~~~~kA~~k~ser~~k  185 (187)
T COG5541         160 DGMKV-PRGFASFLHKATKKLSERSNK  185 (187)
T ss_pred             hhhcc-chhHHHHHHHHHHHHHHHHhc
Confidence             3444 889999999999999998764

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=99.97  E-value=2.3e-31  Score=195.70  Aligned_cols=141  Identities=21%  Similarity=0.380  Sum_probs=131.6

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ||++++|.|++|++++.|||.+.  +..+|.++..++++.+..++.+ +++++...+..+|||+|++|||+++++.++||
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~--~~~e~~kli~~i~~lIs~R~~k-e~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnE   77 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPV--SDPEQAKLIADIYELISARKPK-ESNFIEGKNEKIVYRRYATLYFVFGVDNDDNE   77 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccC--CcHHHHHHHHHHHHHHHcCCch-hcccccccCcEEEeeecCcEEEEEEEcCCCCc
Confidence            79999999999999999999886  6778888999999999888765 58999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD  150 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~  150 (177)
                      +++++++|.|+++|++||+++|+.+ +++||.++|.+||||+-+|.++||+++.+.+++..-..+
T Consensus        78 l~iL~lIh~FVE~lDr~FgnVCELd-lIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~~lda~  141 (152)
T COG5030          78 LIILELIHNFVEILDRFFGNVCELD-LIFNFQKVYAILDEMILGGEIIESSKNEVLEHVYALDAE  141 (152)
T ss_pred             chHHHHHHHHHHHHHHHhccceeeE-eEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHHHHHhh
Confidence            9999999999999999999999996 999999999999999999999999999999998765433

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.2e-29  Score=185.49  Aligned_cols=139  Identities=24%  Similarity=0.385  Sum_probs=127.5

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEE----e--cCeEEEEEEeCcEEEEEEe
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAM----L--EGNVIVYKFVQDLHFFVTG   79 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~----~--~~~~ivy~~~~dl~~~~v~   79 (177)
                      ||+|++|+|.+|++++.|||++.  +.+.|+.+.+++|+.+.+++.. .|+++.    .  .+..++||+|+.|||+.|.
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~--~~~~Qq~lir~vf~lvs~R~~n-~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvv   77 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPV--DEEKQQQLIREVFHLVSKRPDN-VCNFLEGNSLIGGSDNRLIYRHYATLYFVFVV   77 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcC--ChHHHHHHHHHHHHHHHcCCch-HhhhhccccccCCccceeehheeeeEEEEEEE
Confidence            89999999999999999999996  6889999999999999998743 244433    2  4789999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCC
Q 030448           80 GEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHS  148 (177)
Q Consensus        80 ~~~eNel~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~  148 (177)
                      |++|+||+++++++.|+++|+++|.++|+.+ +++|+++++.+|+|++.+|.++||+.+.|...+..+.
T Consensus        78 D~sEsEL~iLDLIQvfVEtLDkCF~nVcELD-liF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~n  145 (182)
T KOG0936|consen   78 DSSESELGILDLIQVFVETLDKCFENVCELD-LIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQN  145 (182)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-heeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhc
Confidence            9999999999999999999999999999996 9999999999999999999999999999999997665

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-28  Score=177.04  Aligned_cols=138  Identities=17%  Similarity=0.222  Sum_probs=126.0

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ||++|+|+|++|+++++|||-+.  +..+++..+.++++.+..++.+.+..+......++++|++++|||++|++.-.||
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~--dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDne   78 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQF--DDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNE   78 (143)
T ss_pred             CeEEEEEEccccceeheeeeecc--CchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCch
Confidence            89999999999999999999775  4566788899999999999887655666666667777799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcC
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVAS  146 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~  146 (177)
                      ++.++-+|.++++|+.+|+++|+.+ +..||.+||.++|||+-+|.++||++..+.+|+.+
T Consensus        79 layLe~IHlFVEvLd~fF~NVCELD-lvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~  138 (143)
T KOG0935|consen   79 LAYLEHIHLFVEVLDEFFHNVCELD-LVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLM  138 (143)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccee-eeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            9999999999999999999999996 99999999999999999999999999999999865

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-28  Score=180.20  Aligned_cols=139  Identities=20%  Similarity=0.333  Sum_probs=129.7

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ||+++++.+++|+++++|||.+.  +.++|+..++++.+.+..++++. |+++.++++.+|||+++++||+++...++||
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~--~~~er~~i~re~i~~~Lar~pk~-csfie~kd~kvVyrryasl~f~~~v~~~dNE   77 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEAL--SIKERKKIERELIKSVLARKPKM-CSFIEYKDEKVVYRRYASLFFCVGVEDNDNE   77 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhh--cHHHHHHHHHHHHHHHHhCCccc-ccchhccCceehhhhhhhEEEEEEEecCCch
Confidence            79999999999999999999986  68899999999999999887664 8999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCC
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHS  148 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~  148 (177)
                      |+++|++|+++++|++|||++|+.+ |++||.++|.+|||++-.|-++||..+....-+...+
T Consensus        78 L~~LE~IH~~vE~lDkYFg~VCELD-iiFNfekay~ILde~~~~g~~~e~~k~~~~~~i~~ad  139 (145)
T KOG0934|consen   78 LAILEFIHNYVELLDKYFGSVCELD-IIFNFEKAYFILDEFLLGGEIQETSKNDVLKAIAQAD  139 (145)
T ss_pred             hhHHHHHHHHHHHHHHHhccceeeE-EEEehHhHHHHHHHHhcCcchHhhhcccHHHHHHHhh
Confidence            9999999999999999999999996 9999999999999999999999999888777765543

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=9.9e-26  Score=187.47  Aligned_cols=138  Identities=17%  Similarity=0.227  Sum_probs=120.4

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ||++++|+|.+|++++.|.|+++.. ...-..|+-++.     .+...++|+..+++++++|.+..+||+++++++|.|.
T Consensus         1 misglfi~n~rGevlink~fr~dlk-rs~~diFRv~vi-----~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nv   74 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLK-RSIVDIFRVQVI-----NNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANV   74 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhh-hhHHHHHHHhhh-----hccccCCCeeEecceeEEEEeeccEEEEEEecCCCch
Confidence            8999999999999999999998721 222333443333     3333458999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD  150 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~  150 (177)
                      .+++|||..+..++..||++ ..++.|++||..||++||||+|+||||+|+|+.++..+..++..
T Consensus        75 a~v~eFl~kl~avm~aYfgk-~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vr  138 (446)
T KOG0938|consen   75 AAVFEFLYKLDAVMNAYFGK-DREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVR  138 (446)
T ss_pred             hhHHHHHHHHHHHHHHHhcc-cchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhh
Confidence            99999999999999999995 66778999999999999999999999999999999999988754

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.8e-21  Score=167.07  Aligned_cols=137  Identities=19%  Similarity=0.329  Sum_probs=118.9

Q ss_pred             eeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHH
Q 030448            7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL   86 (177)
Q Consensus         7 I~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel   86 (177)
                      +++++++|.+|+++++|.|+.+++ ...-..|-..++.+.   ......|++.++|..++|.++.++|+++++..|.|..
T Consensus         1 ~sa~fild~~G~~lisr~yr~dv~-~s~~~~F~~~l~~~e---~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~   76 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGDVP-MSSTEKFFRKLFEKE---EGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAA   76 (424)
T ss_pred             CceEEEEcCCCcEeEeecccccCC-hhhhhhHHHHHhhhc---ccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHH
Confidence            579999999999999999999854 333344443333322   2222369999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCC
Q 030448           87 ILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHS  148 (177)
Q Consensus        87 ~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~  148 (177)
                      .++++|+++++++++||+ .+++.++++||+.+|++|||++|+||||+|+++.+++++.+++
T Consensus        77 ~v~~~l~~~~~v~~~y~~-~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~~  137 (424)
T KOG0937|consen   77 LVLSFLYAVADVFGDYLS-ELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQKA  137 (424)
T ss_pred             HHHHHHHHHHHHHHHHhc-cCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhcccc
Confidence            999999999999999999 5888899999999999999999999999999999999999885

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1e-20  Score=158.65  Aligned_cols=140  Identities=16%  Similarity=0.242  Sum_probs=117.9

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCccc-CceEEecCeEEEEEEeCcEEEEEEecCCcc
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTE-AEIAMLEGNVIVYKFVQDLHFFVTGGEDEN   84 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~-~~i~~~~~~~ivy~~~~dl~~~~v~~~~eN   84 (177)
                      ||.++++.|.+|+.++.+.+++..    ..+..+..++..........+ .|++....+++.-.-..+++|+++...+.-
T Consensus         1 mi~siflidtsg~l~lek~~~g~t----~~rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~p   76 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGST----VVRSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETP   76 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCce----eeeehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccCC
Confidence            899999999999999999999631    134566667765544432222 356666777777777788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448           85 ELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD  150 (177)
Q Consensus        85 el~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~  150 (177)
                      ||.+.|||+++++++.+|||+ +++..|.+|++.||++||||+|+|+|..|||++|++.|.+++..
T Consensus        77 PL~~iefL~rv~dv~~eyFg~-~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps~l  141 (418)
T KOG2740|consen   77 PLMVIEFLHRVVDVLLEYFGG-LSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPSFL  141 (418)
T ss_pred             ChhHHHHHHHHHHHHHHHhcc-cCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChHHH
Confidence            999999999999999999996 88888999999999999999999999999999999999998754

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=5.9e-06  Score=71.91  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=113.1

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ++-+..+.+.+|+.+++|-|+..  +   +.++|.-+..=-+--....+.-++..+.+.+||+...++|+++++....|-
T Consensus         2 vvlaa~i~t~~Gk~ivsRqf~~M--s---r~RIEgLl~aFpkLv~~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNI   76 (512)
T KOG2635|consen    2 VVLAASINTKTGKAIVSRQFREM--S---RSRIEGLLAAFPKLVSAGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNI   76 (512)
T ss_pred             eEEEEEEeecCCceeeehHhHhh--h---HHHHHHHHHHhHHhhccCCCccEEecccEEEEEEecccEEEEEEeccccch
Confidence            56678889999999999999853  3   345555443211111222235788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD  150 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~  150 (177)
                      +-=++-|+.|..+.-.|+.. ++++.|.+|-=-+...+||++--||=...+-.-|+.+..|.+.+
T Consensus        77 leDl~TL~Lfskvipey~~s-lde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eMdSHE  140 (512)
T KOG2635|consen   77 LEDLETLRLFSKVIPEYCSS-LDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEMDSHE  140 (512)
T ss_pred             hhHHHHHHHHHHhchhhhhh-hhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhccccHH
Confidence            99999999999999999876 67767999988888999999999999999999999999887654

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=97.56  E-value=0.0046  Score=48.82  Aligned_cols=82  Identities=22%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             cCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHH
Q 030448           61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVI  140 (177)
Q Consensus        61 ~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i  140 (177)
                      +...++|...+++.|..|.+..||-++.-.+|..++..|.+.++....-..+..+-|.|..+|+..+-+|-.+=-+...+
T Consensus       102 ~~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~  181 (189)
T PF15001_consen  102 TPKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFV  181 (189)
T ss_pred             CCcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHH
Confidence            34589999999999999999999999999999999999988886533334588899999999999999999888887766


Q ss_pred             HH
Q 030448          141 AG  142 (177)
Q Consensus       141 ~~  142 (177)
                      +.
T Consensus       182 k~  183 (189)
T PF15001_consen  182 KQ  183 (189)
T ss_pred             HH
Confidence            54

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=97.08  E-value=0.017  Score=50.86  Aligned_cols=90  Identities=16%  Similarity=0.186  Sum_probs=62.0

Q ss_pred             eeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCc-ccCceEEecCeEEEEEEeCcEEEEEEecCCccHH
Q 030448            8 KNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNAR-TEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL   86 (177)
Q Consensus         8 ~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~-~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel   86 (177)
                      +-+||+...|++|++|| .+    ++.-..+...+...+..-... .+---+..++..+||...+-|+++++++..|++-
T Consensus        12 kh~fIlS~AGKPIysr~-G~----e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~   86 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRY-GD----EDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESES   86 (415)
T ss_pred             CeEEEECCCCceeEEec-CC----hHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHH
Confidence            46899999999999999 22    233334444333333222111 1123466799999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhh
Q 030448           87 ILATVLQGFFDAVGLL  102 (177)
Q Consensus        87 ~l~e~L~~i~~~l~~~  102 (177)
                      .+..-|+.++.-+-.+
T Consensus        87 ~l~~qL~~ly~qils~  102 (415)
T PF03164_consen   87 QLRKQLDYLYSQILSI  102 (415)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8777777766655444

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.02  E-value=0.015  Score=42.69  Aligned_cols=97  Identities=12%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             cceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHH---hhhcC-CcccCceEEecCeEEEEEEeCcEEEEEEec
Q 030448            5 PSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTK---TQKTN-ARTEAEIAMLEGNVIVYKFVQDLHFFVTGG   80 (177)
Q Consensus         5 ~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~---~~~~~-~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~   80 (177)
                      .-+.+|+|.|++|=+++.=..... +....+..|...+-..   +.+.+ +++..=+..++++.+++.....+++.++++
T Consensus        15 ~Gl~~I~itDrDGvpi~~v~~~~~-~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias   93 (119)
T PF08923_consen   15 DGLQAIVITDRDGVPIAKVSSDSA-PESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIAS   93 (119)
T ss_dssp             TTEEEEEEEETTS-EEEEEE-TTS--GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEEEEECCCCcEEEEecCCCC-cchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEec
Confidence            347899999999999888555443 3333334444332221   22222 333335678999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhh
Q 030448           81 EDENELILATVLQGFFDAVGLL  102 (177)
Q Consensus        81 ~~eNel~l~e~L~~i~~~l~~~  102 (177)
                      ++.|--+++.+-+.+...+...
T Consensus        94 ~~aN~G~il~l~~~L~~~l~~l  115 (119)
T PF08923_consen   94 SNANTGLILSLEEELAPILNEL  115 (119)
T ss_dssp             TTS-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhHHHHHHHHHHH
Confidence            9999999999888888877665

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=92.25  E-value=2.4  Score=28.39  Aligned_cols=49  Identities=6%  Similarity=-0.028  Sum_probs=44.0

Q ss_pred             ceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHHHHHHHhhcc
Q 030448           56 EIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR  104 (177)
Q Consensus        56 ~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i~~~l~~~~~  104 (177)
                      -.+..+++.+-|...+++.++++++.+...-..+.+|+.+..-+..-++
T Consensus        17 ~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~   65 (83)
T PF13774_consen   17 MSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG   65 (83)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence            4677899999999999999999999999999999999999998888777

...

>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]

Probab=91.05  E-value=4.5  Score=36.43  Aligned_cols=76  Identities=17%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             eeEEEEcCCCCEeEEecCCCCCC--ChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            8 KNILLLDSEGKRVAVKYYSNDWP--TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         8 ~~i~iln~~G~~il~k~Y~~~~~--~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      +-+||+.+.|++++++|=..+..  +-...++....+. .    + +..--.+..+|+.++|-..+-++++++...+.+.
T Consensus       118 khifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q-~----~-~~~i~si~a~g~k~vfl~kspl~LvA~s~t~~Sa  191 (523)
T KOG0997|consen  118 KHIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQ-V----S-GLAITSIHAFGNKLVFLQKSPLLLVAVSRTSQSA  191 (523)
T ss_pred             ceEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHh-h----C-CceEEEEEecCceEEEEecCcEEEEEEcccccCH
Confidence            35899999999999999654310  0122333332221 1    1 1111335679999999999999999999988766


Q ss_pred             HHHH
Q 030448           86 LILA   89 (177)
Q Consensus        86 l~l~   89 (177)
                      --+.
T Consensus       192 ~qL~  195 (523)
T KOG0997|consen  192 AQLL  195 (523)
T ss_pred             HHHH
Confidence            5444

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.35  E-value=6.9  Score=31.30  Aligned_cols=85  Identities=9%  Similarity=0.154  Sum_probs=58.5

Q ss_pred             CCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHH
Q 030448           15 SEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQG   94 (177)
Q Consensus        15 ~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~   94 (177)
                      .+|-++|++|=.-.    ..-...-.++.+|....++  ..--..+|+|.|-|.+.+++.++++++.+..--.-+.||++
T Consensus         9 ARGTvvLaeft~~~----gNf~sva~qiL~klp~~~n--~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFLe~   82 (217)
T KOG0859|consen    9 ARGTVILAEFTEFS----GNFSSIAAQILQKLPSSSN--SKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFLER   82 (217)
T ss_pred             ecceEEEEeeeecc----CCHHHHHHHHHHhCCCCCC--CceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHHHH
Confidence            58999999985311    1122455666666544421  01235689999999999999999999988776666777777


Q ss_pred             HHHHHHhhccC
Q 030448           95 FFDAVGLLLRG  105 (177)
Q Consensus        95 i~~~l~~~~~~  105 (177)
                      +-+-+.+-+|+
T Consensus        83 Ik~~F~k~YG~   93 (217)
T KOG0859|consen   83 IKEDFKKRYGG   93 (217)
T ss_pred             HHHHHHHHhcc
Confidence            77666555554

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.45  E-value=20  Score=28.97  Aligned_cols=74  Identities=11%  Similarity=0.071  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHHHHHHHhhccCCCCH
Q 030448           34 AKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDK  109 (177)
Q Consensus        34 ~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i~~~l~~~~~~~~~~  109 (177)
                      +.++-.+.++++...... . ---+..|.+.|-|...++++.++.++.+..--+.+.+|+.+.+-+.+.+++.+..
T Consensus        32 e~r~q~K~L~kkLs~~s~-~-r~Sietg~f~fHfli~~~Vcylvicd~~yP~kLAF~YLedL~~EF~~~~~~~~~~  105 (216)
T KOG0862|consen   32 EYRQQAKSLFKKLSQQSP-T-RCSIETGPFVFHFLIESGVCYLVICDKSYPRKLAFSYLEDLAQEFDKSYGKNIIQ  105 (216)
T ss_pred             HHHHHHHHHHHhccCCCC-c-ccccccCCeEEEEEecCCEEEEEEecCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence            344444556655444321 0 1234568899999999999999999999999999999999999998888864443

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=82.08  E-value=19  Score=26.92  Aligned_cols=98  Identities=7%  Similarity=0.154  Sum_probs=57.4

Q ss_pred             eeeEEEEcCCCCEeEEecCCCCC------CChhHHHHHHHHHHHHh---hhcCC---c----ccC--ceEEecCeEEE-E
Q 030448            7 IKNILLLDSEGKRVAVKYYSNDW------PTNSAKEAFEKAVFTKT---QKTNA---R----TEA--EIAMLEGNVIV-Y   67 (177)
Q Consensus         7 I~~i~iln~~G~~il~k~Y~~~~------~~~~~~~~~e~~i~~~~---~~~~~---~----~~~--~i~~~~~~~iv-y   67 (177)
                      |..++|+|++|..|+.|-|....      ...+++..+-.-++...   .+-..   .    ..+  ..+..+.+.+- |
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~   80 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF   80 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence            57899999999999999997531      22455666655555331   11111   0    011  23456776554 4


Q ss_pred             EEeCcEEEEEEecCCccHHHHHHHHHHHHHHHHhhc-cC
Q 030448           68 KFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLL-RG  105 (177)
Q Consensus        68 ~~~~dl~~~~v~~~~eNel~l~e~L~~i~~~l~~~~-~~  105 (177)
                      ..-.++-|+++++.+... ..-++++.+++...+|. ++
T Consensus        81 eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KN  118 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKN  118 (142)
T ss_dssp             E-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-
T ss_pred             EcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhC
Confidence            567889999999998853 34556788888887774 44

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
3tjz_C	153	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-27
2hf6_A	149	Solution Structure Of Human Zeta-Cop Length = 149		5e-26

>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 153

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
           VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+               
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 XVDGGIILETDANVIAGKVASHSVDV 151
            VDGG+ILE+D   +  +VA    DV
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV 153

>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop Length = 149

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 XVDGGIILETDANVIAGKVA 145
            VDGG+ILE+D   +  +VA
Sbjct: 128 IVDGGVILESDPQQVVHRVA 147
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	4e-49
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	1e-22
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	3e-20
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	1e-08
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	2e-08

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score =  155 bits (392), Expect = 4e-49
 Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 4/149 (2%)

Query: 3   TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEG 62
           +  ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG
Sbjct: 9   SLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT----HRTDSEIALLEG 64

Query: 63  NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLC 122
             +VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+  LEN++ + L 
Sbjct: 65  LTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLA 124

Query: 123 LDEIVDGGIILETDANVIAGKVASHSVDV 151
           +DEIVDGG+ILE+D   +  +VA    DV
Sbjct: 125 VDEIVDGGVILESDPQQVVHRVALRGEDV 153

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score = 87.3 bits (216), Expect = 1e-22
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
           I+ IL+ +  GK    K+Y      +  K+   + V       +A+            I+
Sbjct: 2   IRFILIQNRAGKTRLAKWY--MQFDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKII 58

Query: 67  YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
           Y+    L+F +    ++N L     +  F + +      NV + + + N   +   +DE+
Sbjct: 59  YRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF-HNVCELDLVFNFYKVYTVVDEM 117

Query: 127 VDGGIILETDANVI 140
              G I ET    +
Sbjct: 118 FLAGEIRETSQTKV 131

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score = 81.3 bits (200), Expect = 3e-20
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 4/161 (2%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
           ++ +LL   +GK    K+Y     ++  ++   + +         +            +V
Sbjct: 2   MRFMLLFSRQGKLRLQKWY--LATSDKERKKMVRELMQVVLARKPK-MCSFLEWRDLKVV 58

Query: 67  YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
           YK    L+F       +NELI   ++  + + +     G+V + + + N +     LDE 
Sbjct: 59  YKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDEF 117

Query: 127 VDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATA 167
           + GG + +T    +   +    +      S +++ + +  A
Sbjct: 118 LMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 158

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 5/146 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           S   + +LD +GK +  + Y  D   +   E F   +  K ++        I    G   
Sbjct: 2   SASAVYVLDLKGKVLICRNYRGDVDMSEV-EHFMPILMEKEEEGMLSP---ILAHGGVRF 57

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           ++    +L+   T  ++    ++ + L              ++++   +N  +I   LDE
Sbjct: 58  MWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFS-EYFKELEEESIRDNFVIIYELLDE 116

Query: 126 IVDGGIILETDANVIAGKVASHSVDV 151
           ++D G    TD+ ++   +      +
Sbjct: 117 LMDFGYPQTTDSKILQEFITQEGHKL 142

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 6/167 (3%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
           I  + + + +G+ +  + Y +D   N+  +AF   V    Q    +  + +  +      
Sbjct: 2   IGGLFIYNHKGEVLISRVYRDDIGRNAV-DAFRVNVIHARQ----QVRSPVTNIARTSFF 56

Query: 67  YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
           +    ++       ++ N  ++   L    D +     G + ++    N  LI   LDEI
Sbjct: 57  HVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVM-AAYFGKISEENIKNNFVLIYELLDEI 115

Query: 127 VDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTR 173
           +D G    ++   +   +    +       E+          +   R
Sbjct: 116 LDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWR 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	100.0
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	100.0
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.97
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	99.97
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	96.57
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.02
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	95.76
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	95.14
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	94.96
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	94.54
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	94.35
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	93.56
2j3w_A	142	Sedlin, trafficking protein particle complex prote	89.22
3cue_C	159	Transport protein particle 18 kDa subunit; membran	88.48

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=2.1e-42  Score=263.26  Aligned_cols=145  Identities=45%  Similarity=0.770  Sum_probs=129.5

Q ss_pred             CCccceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecC
Q 030448            2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGE   81 (177)
Q Consensus         2 ~~~~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~   81 (177)
                      .|++||+|++|+|++|+++++|||++++++.++|+++++.+++++.+ .   ++|++.+++++++||++++|||+++++.
T Consensus         8 ~sl~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r-~---~~~i~~~~~~~~vy~~~~~Lyfv~~~~~   83 (153)
T 3tjz_C            8 PSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR-T---DSEIALLEGLTVVYKSSIDLYFYVIGSS   83 (153)
T ss_dssp             CCSBCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS-C---CCCEEEETTEEEEEEECSSCEEEEEEET
T ss_pred             ccHHHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C---CCCEEEECCEEEEEEEECCEEEEEEEcC
Confidence            47889999999999999999999998766678899999999999743 2   3799999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448           82 DENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD  150 (177)
Q Consensus        82 ~eNel~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~  150 (177)
                      ++||++++++||+++++|++||++.+++.+|++||+++|++||||+|+|+|+|||++.|++++.+++.+
T Consensus        84 ~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~~~  152 (153)
T 3tjz_C           84 YENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED  152 (153)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC------
T ss_pred             CCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcccCC
Confidence            999999999999999999999955577778999999999999999999999999999999999987654

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=2.2e-38  Score=242.27  Aligned_cols=140  Identities=16%  Similarity=0.288  Sum_probs=130.3

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ||++++|+|++|+++++|||++.  +.++|.++++.+++++..+++. .+|++.+++++++|+++++|||+++++.++||
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne   77 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLAT--SDKERKKMVRELMQVVLARKPK-MCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE   77 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCC--CHHHHHHHHHHHHHHHHTSCSS-SCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred             CeEEEEEECCCCCEEEEEeCCCC--CHHHHHHHHHHHHHHHhccCCC-CCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            89999999999999999999986  5778889999999988776543 48999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCc
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSV  149 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~  149 (177)
                      ++++++||+++++|++|||+ +++.+|++||+++|++||||+|+|+|++||++.|+++|.+++.
T Consensus        78 l~~le~L~~~vevl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~  140 (158)
T 1w63_Q           78 LITLELIHRYVELLDKYFGS-VCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL  140 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcc-CCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence            99999999999999999997 5666799999999999999999999999999999999988764

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=100.00  E-value=2.8e-36  Score=226.72  Aligned_cols=136  Identities=18%  Similarity=0.285  Sum_probs=123.3

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ||+|++|+|++|+++++|||++.  +.+.++++++.+++++..++++ .+|++.+++++++|+++++|||+++++.++||
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~--~~~~~~~~~~~f~~~v~~~~~~-~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~   77 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQF--DDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN   77 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCC--CHHHHHHHHHHHHHHHHTCCTT-SCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCC--ChhhhHHHHHHHHHHHhcCCCC-CCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence            89999999999999999999974  5778999999999998865433 58999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhc
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVA  145 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~  145 (177)
                      ++++++||+++++|++|||+ +++.+|++||+++|++||||+|+|+|++|++..+.+++.
T Consensus        78 l~~le~L~~~ve~l~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~  136 (142)
T 2vgl_S           78 LAYLEAIHNFVEVLNEYFHN-VCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL  136 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHH
Confidence            99999999999999999987 666679999999999999999999999997666666553

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=99.97  E-value=2.1e-30  Score=225.76  Aligned_cols=139  Identities=13%  Similarity=0.224  Sum_probs=120.9

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   85 (177)
                      ||++++|+|++|+++++|||+++.+ ....+.    +.+.+........+|++.++++.++|+++++|||+++++.++||
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~----f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~   75 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDA----FRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA   75 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCC-HHHHHH----HHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCC-hhHHHH----HHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            8999999999999999999998633 333333    33444333222358999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD  150 (177)
Q Consensus        86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~  150 (177)
                      ++++|+||+++++|++||++ +++.+|++||+++|++||||+|+|+|++||++.|++++.+++.+
T Consensus        76 l~~le~L~~~v~vl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~  139 (435)
T 2vgl_M           76 AMVFEFLYKMCDVMAAYFGK-ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIK  139 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccc
Confidence            99999999999999999997 66667999999999999999999999999999999999998865

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.97  E-value=1e-30  Score=227.08  Aligned_cols=141  Identities=18%  Similarity=0.234  Sum_probs=123.2

Q ss_pred             cceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCcc
Q 030448            5 PSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDEN   84 (177)
Q Consensus         5 ~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eN   84 (177)
                      +||+|++|+|++|+++++|||+++.+ ....+.|++.+..+.   +....+|++.++++.++|+++++|||+++++.++|
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~---~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n   76 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVD-MSEVEHFMPILMEKE---EEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNAC   76 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCT-TTTHHHHHHHHHHHH---HTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCC
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCC-hHHHHHHHHHHhhcc---ccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCC
Confidence            38999999999999999999998643 344556666655432   11224899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448           85 ELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD  150 (177)
Q Consensus        85 el~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~  150 (177)
                      |++++|+||+++++|++||++ +++++|++||+++|++||||+|+|+|++||++.|+++|.+++.+
T Consensus        77 ~l~~le~L~~~v~~l~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~  141 (423)
T 1w63_M           77 VSLVFSFLYKVVQVFSEYFKE-LEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHK  141 (423)
T ss_dssp             THHHHHHHHHHHHHHHHHSSC-CSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-cCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcc
Confidence            999999999999999999976 66667999999999999999999999999999999999998865

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=96.57  E-value=0.062  Score=39.53  Aligned_cols=97  Identities=14%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             cceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHh---hhcC-CcccCceEEecCeEEEEEEeCcEEEEEEec
Q 030448            5 PSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKT---QKTN-ARTEAEIAMLEGNVIVYKFVQDLHFFVTGG   80 (177)
Q Consensus         5 ~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~---~~~~-~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~   80 (177)
                      .-+.+|+|.|++|-+++.-..... +...-+..|...+-..+   .|.+ +++..=|..++++.+|.....-+++.++++
T Consensus        36 ~Gl~aI~ItDrDGVpi~kv~~~~~-~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias  114 (143)
T 3cpt_A           36 EGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIAS  114 (143)
T ss_dssp             TTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEEEEECCCCcEEEEecCCCC-chhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEec
Confidence            357899999999999999888653 33344455655533222   1122 333234567899999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhh
Q 030448           81 EDENELILATVLQGFFDAVGLL  102 (177)
Q Consensus        81 ~~eNel~l~e~L~~i~~~l~~~  102 (177)
                      ++.|--+++.+=+.+...++..
T Consensus       115 ~~aNtG~Il~Le~~L~p~l~~L  136 (143)
T 3cpt_A          115 SSANTGLIVSLEKELAPLFEEL  136 (143)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHhhhHHHHHHHHHHH
Confidence            9999988887766666655554

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.02  E-value=0.18  Score=38.61  Aligned_cols=98  Identities=8%  Similarity=-0.002  Sum_probs=65.2

Q ss_pred             ceeeEEEEcCCCCEeEEecCCCCCC---ChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCC
Q 030448            6 SIKNILLLDSEGKRVAVKYYSNDWP---TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGED   82 (177)
Q Consensus         6 mI~~i~iln~~G~~il~k~Y~~~~~---~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~   82 (177)
                      ||...+|.-....++|+.++...-.   ....-+.+.+.+.+++....+  .--.+..+++.+.|...+++.++++++.+
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~--~r~s~~~~~y~fhy~~~~gl~~l~i~d~~   79 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSP--TRCTLEAGAMTFHYIIEQGVCYLVLCEAA   79 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSC--SEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence            5666666554335666667653200   112234445555555543111  11346689999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHhhccC
Q 030448           83 ENELILATVLQGFFDAVGLLLRG  105 (177)
Q Consensus        83 eNel~l~e~L~~i~~~l~~~~~~  105 (177)
                      ...-..+.||+.+.+-+..-++.
T Consensus        80 yp~r~af~fL~~i~~~F~~~~~~  102 (196)
T 2nut_C           80 FPKKLAFAYLEDLHSEFDEQHGK  102 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHhccc
Confidence            99999999999998887765554

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=95.76  E-value=0.092  Score=40.18  Aligned_cols=83  Identities=8%  Similarity=0.021  Sum_probs=59.4

Q ss_pred             CCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 030448           16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF   95 (177)
Q Consensus        16 ~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i   95 (177)
                      +|.++|+.|=..    ...-..+...+..++...+.   --.+.++++.+-|...+++.++++++.+...-..+.||+.+
T Consensus        11 rg~~iLae~t~~----~gnf~~ia~~iL~kip~~~~---k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i   83 (189)
T 4b93_A           11 RGTTILAKHAWC----GGNFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV   83 (189)
T ss_dssp             ETTEEEEEEESS----EECHHHHHHHHHTTCCSSSE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             eCCEEEEeCCCC----CCCHHHHHHHHHHhCCCCCC---eEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHH
Confidence            699999997332    12222344444443321111   13467899999999999999999999999999999999999


Q ss_pred             HHHHHhhccC
Q 030448           96 FDAVGLLLRG  105 (177)
Q Consensus        96 ~~~l~~~~~~  105 (177)
                      .+-+..-++.
T Consensus        84 ~~eF~~~~~~   93 (189)
T 4b93_A           84 KKRFQTTYGS   93 (189)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHhhccc
Confidence            9888766654

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=95.14  E-value=0.2  Score=37.76  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=61.3

Q ss_pred             CCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 030448           16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF   95 (177)
Q Consensus        16 ~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i   95 (177)
                      +|.++|+.|-...    ......-+.+.+++...+.   --.+..+++.+-|...+++.++++++.+..--..+.||+.+
T Consensus        53 RG~~VLae~t~~~----gnf~~iak~ll~kl~~~~~---r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI  125 (169)
T 2vx8_A           53 RGTTILAKHAWCG----GNFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV  125 (169)
T ss_dssp             ETTEEEEEEESSC----BSHHHHHHHHHTTSCSSCE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             cCCEEEEEeccCC----CCHHHHHHHHHhhCCCCCC---ceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHH
Confidence            5778888874321    1233444555555443221   13467899999999999999999999999999999999999


Q ss_pred             HHHHHhhccC
Q 030448           96 FDAVGLLLRG  105 (177)
Q Consensus        96 ~~~l~~~~~~  105 (177)
                      .+-+..-+++
T Consensus       126 ~~eF~~~y~~  135 (169)
T 2vx8_A          126 KKRFQTTYGS  135 (169)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhhh
Confidence            9988777665

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=94.96  E-value=0.7  Score=33.61  Aligned_cols=99  Identities=9%  Similarity=-0.067  Sum_probs=65.3

Q ss_pred             eeeEEEEcCCC--CEeEEecCCCC---CCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEE-EeCcEEEEEEec
Q 030448            7 IKNILLLDSEG--KRVAVKYYSND---WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK-FVQDLHFFVTGG   80 (177)
Q Consensus         7 I~~i~iln~~G--~~il~k~Y~~~---~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~-~~~dl~~~~v~~   80 (177)
                      |-++.|+-..+  -++|+..++-.   +......++|...+.+.+..+-....---+..+++.+-|. +.+++..+++++
T Consensus         7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i~D   86 (144)
T 3bw6_A            7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITD   86 (144)
T ss_dssp             EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEEEE
T ss_pred             EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence            44554444332  56788877532   1112233556556666655543211123466799999888 789999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhhccC
Q 030448           81 EDENELILATVLQGFFDAVGLLLRG  105 (177)
Q Consensus        81 ~~eNel~l~e~L~~i~~~l~~~~~~  105 (177)
                      .+...-..+.+|+.+.+-+..-++.
T Consensus        87 ~~yp~rvAF~~L~~i~~eF~~~y~~  111 (144)
T 3bw6_A           87 KEYPVRPAYTLLNKILDEYLVAHPK  111 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCChhHHHHHHHHHHHHHHHHccc
Confidence            9999999999999988877665554

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=94.54  E-value=1  Score=34.59  Aligned_cols=99  Identities=10%  Similarity=0.053  Sum_probs=67.9

Q ss_pred             ceeeEEEEcCCCC--EeEEecCCCC---CCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEE-EEEeCcEEEEEEe
Q 030448            6 SIKNILLLDSEGK--RVAVKYYSND---WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV-YKFVQDLHFFVTG   79 (177)
Q Consensus         6 mI~~i~iln~~G~--~il~k~Y~~~---~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~~v~   79 (177)
                      -|-++.++...|.  .+++..|+-.   +.....-.+|....-+.+.++.....--.+..+++.+- |.+.+++.+++++
T Consensus         3 k~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~it   82 (199)
T 3kyq_A            3 KLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIA   82 (199)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEE
T ss_pred             eEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEE
Confidence            3557777765544  3567766521   12234455665555555555532211234668899888 8999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHHHHhhcc
Q 030448           80 GEDENELILATVLQGFFDAVGLLLR  104 (177)
Q Consensus        80 ~~~eNel~l~e~L~~i~~~l~~~~~  104 (177)
                      +.+...-..+.+|+.+.+-+..-++
T Consensus        83 d~~yp~r~AF~fL~ei~~eF~~~~~  107 (199)
T 3kyq_A           83 DSEYPSRVAFTLLEKVLDEFSKQVD  107 (199)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999988877665

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=94.35  E-value=0.48  Score=35.78  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=58.8

Q ss_pred             CCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 030448           16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF   95 (177)
Q Consensus        16 ~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i   95 (177)
                      +|.++|+.|=... .+   -..+-+.+.+++...+   .--.+..+++.+-|...+++.++++++.+..--..+.||+.+
T Consensus        63 rg~tiLAE~t~~~-gn---f~~va~~iL~kip~~~---~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI  135 (173)
T 4afi_A           63 RGTTILAKHAWCG-GN---FLEVTEQILAKIPSEN---NKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV  135 (173)
T ss_dssp             ETTEEEEEEESSC-CC---HHHHHHHHHTTSCSSS---EEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEccCCC-CC---HHHHHHHHHHhCCCCC---CeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHH
Confidence            5889999885432 11   1233333333322211   113467899999999999999999999999999999999999


Q ss_pred             HHHHHhhccC
Q 030448           96 FDAVGLLLRG  105 (177)
Q Consensus        96 ~~~l~~~~~~  105 (177)
                      .+-+..-+++
T Consensus       136 ~~eF~~~yg~  145 (173)
T 4afi_A          136 KKRFQTTYGS  145 (173)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHHhch
Confidence            9888776664

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=93.56  E-value=0.66  Score=33.88  Aligned_cols=96  Identities=9%  Similarity=0.096  Sum_probs=58.8

Q ss_pred             cceeeEEEEcCCCCEeEEecCCCCC---CC-hhHHHHHHHHHHHH---hhhcCCc-ccC--ceEEecCe-EEEEEEeCcE
Q 030448            5 PSIKNILLLDSEGKRVAVKYYSNDW---PT-NSAKEAFEKAVFTK---TQKTNAR-TEA--EIAMLEGN-VIVYKFVQDL   73 (177)
Q Consensus         5 ~mI~~i~iln~~G~~il~k~Y~~~~---~~-~~~~~~~e~~i~~~---~~~~~~~-~~~--~i~~~~~~-~ivy~~~~dl   73 (177)
                      ++|.++.|+|++|..|+.|-|.+.-   .+ .++.+....-++..   +.+.... ...  ..+..+++ .-.|..-.++
T Consensus         1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI   80 (145)
T ss_dssp             -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred             CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence            3688999999999999999996421   11 22333332222221   1111111 111  33456676 4455566789


Q ss_pred             EEEEEecCCccHHHHHHHHHHHH-HHHHhh
Q 030448           74 HFFVTGGEDENELILATVLQGFF-DAVGLL  102 (177)
Q Consensus        74 ~~~~v~~~~eNel~l~e~L~~i~-~~l~~~  102 (177)
                      -|+++++..+++  +-++|+.++ +...+|
T Consensus        81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~  108 (145)
T 2j3t_C           81 KVVMNTDLGVGP--IRDVLHHIYSALYVEF  108 (145)
T ss_dssp             EEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred             EEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence            999999987665  668888888 677774

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=89.22  E-value=4.8  Score=28.98  Aligned_cols=98  Identities=5%  Similarity=-0.001  Sum_probs=57.2

Q ss_pred             eeeEEEEcCCCCEeEEecCCCCCCC-hhHHHHHHH-H-HHHH---hhhcC-CcccCceE---EecCe-EEEEEEeCcEEE
Q 030448            7 IKNILLLDSEGKRVAVKYYSNDWPT-NSAKEAFEK-A-VFTK---TQKTN-ARTEAEIA---MLEGN-VIVYKFVQDLHF   75 (177)
Q Consensus         7 I~~i~iln~~G~~il~k~Y~~~~~~-~~~~~~~e~-~-i~~~---~~~~~-~~~~~~i~---~~~~~-~ivy~~~~dl~~   75 (177)
                      |.++.|+|++|++++.+-|.+.-.. .++..+... . ++..   +.+.. ...+....   ..+++ ...|..-.++-|
T Consensus         6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kf   85 (142)
T 2j3w_A            6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF   85 (142)
T ss_dssp             CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEE
T ss_pred             EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEE
Confidence            6899999999999999999753110 011111111 1 2211   11111 11111122   23444 345556678889


Q ss_pred             EEEecCCccHHHHHHHHHHHHHHHHhhccC
Q 030448           76 FVTGGEDENELILATVLQGFFDAVGLLLRG  105 (177)
Q Consensus        76 ~~v~~~~eNel~l~e~L~~i~~~l~~~~~~  105 (177)
                      +++++.. ++-.+-++++.++++..++..+
T Consensus        86 vl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N  114 (142)
T 2j3w_A           86 IMLHDVR-QEDGIKNFFTDVYDLYIKFAMN  114 (142)
T ss_dssp             EEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence            9999863 5667888888888888777655

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=88.48  E-value=2.8  Score=30.96  Aligned_cols=100  Identities=12%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             cceeeEEEEcCCCCEeEEecCCCC-------C---CChhHHHHHHHHHHHH---hhhcCCccc-C--ceEEecCeEE-EE
Q 030448            5 PSIKNILLLDSEGKRVAVKYYSND-------W---PTNSAKEAFEKAVFTK---TQKTNARTE-A--EIAMLEGNVI-VY   67 (177)
Q Consensus         5 ~mI~~i~iln~~G~~il~k~Y~~~-------~---~~~~~~~~~e~~i~~~---~~~~~~~~~-~--~i~~~~~~~i-vy   67 (177)
                      ++|.+++|+|++|..|+.|-|.+.       .   ...++......-++..   +.+...... .  ..+..+.+.+ .|
T Consensus         1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~   80 (159)
T 3cue_C            1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY   80 (159)
T ss_dssp             CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred             CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence            468899999999999999988531       0   0112222222222221   122111111 1  2233455543 34


Q ss_pred             EEeCcEEEEEEecCCccHHHHHHHHHHHHH-HHHhhc-cCC
Q 030448           68 KFVQDLHFFVTGGEDENELILATVLQGFFD-AVGLLL-RGN  106 (177)
Q Consensus        68 ~~~~dl~~~~v~~~~eNel~l~e~L~~i~~-~l~~~~-~~~  106 (177)
                      ..-.++-|+++++..+++  +-++|+.+++ +..+|. +++
T Consensus        81 eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~yv~kNP  119 (159)
T 3cue_C           81 CTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVKYVSNNL  119 (159)
T ss_dssp             CCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHHHHHSCT
T ss_pred             EeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHhCC
Confidence            455689999999987654  4477888886 777743 554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	6e-26
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	6e-24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	100.0
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	97.11
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	92.06
d2fh5a1	129	Signal recognition particle receptor alpha subunit	83.59

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0068  Score=41.52  Aligned_cols=97  Identities=14%  Similarity=0.142  Sum_probs=71.4

Q ss_pred             cceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHh---hhcC-CcccCceEEecCeEEEEEEeCcEEEEEEec
Q 030448            5 PSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKT---QKTN-ARTEAEIAMLEGNVIVYKFVQDLHFFVTGG   80 (177)
Q Consensus         5 ~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~---~~~~-~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~   80 (177)
                      .-+.+|+|.|++|=++++=+-... |...-+..|...+--.+   .+-+ +++..=+..++++.+++-....+++.+++.
T Consensus        15 ~Gl~~I~iTDrDGVpv~~v~~~~~-p~~~~~~~~lstf~~a~dq~sKLglg~~ksii~~Y~~~qvv~~~~~pl~vt~ia~   93 (116)
T d3cpta1          15 EGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIAS   93 (116)
T ss_dssp             TTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEEEEEcCCCcEEEEecCCCC-hhhhcchHHHHHHHHHHHhhcccCCCCCcEEEEEecCeEEEEEecCceEEEEEec
Confidence            458899999999999887765443 33344545555543222   1111 344346778999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhh
Q 030448           81 EDENELILATVLQGFFDAVGLL  102 (177)
Q Consensus        81 ~~eNel~l~e~L~~i~~~l~~~  102 (177)
                      .+.|--+++.+-+.+...|++.
T Consensus        94 ~~aNtG~Il~l~~~l~~~L~~l  115 (116)
T d3cpta1          94 SSANTGLIVSLEKELAPLFEEL  115 (116)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhhc
Confidence            9999999999888888877653

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.06  E-value=0.84  Score=31.31  Aligned_cols=98  Identities=11%  Similarity=-0.039  Sum_probs=63.1

Q ss_pred             eeeEEEEcC--CCCEeEEecCCCC---CCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEE-EEEeCcEEEEEEec
Q 030448            7 IKNILLLDS--EGKRVAVKYYSND---WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV-YKFVQDLHFFVTGG   80 (177)
Q Consensus         7 I~~i~iln~--~G~~il~k~Y~~~---~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~~v~~   80 (177)
                      +-++.++..  +.-++|+..|+-.   +.....-+++...+-+.+.++.....--.+..+++.+- |.+.++|..+++++
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g~r~sv~~~~y~~h~yv~~~gl~~l~i~d   82 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIGHVYARSEGICGVLITD   82 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSSSEEEEEETTEEEEEECCSSSCEEEEEBC
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCCceEEEEcCCeEEEEEEeeCCEEEEEEEC
Confidence            335556653  3445677777521   11123334455555566666643322245677888776 77888999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhhcc
Q 030448           81 EDENELILATVLQGFFDAVGLLLR  104 (177)
Q Consensus        81 ~~eNel~l~e~L~~i~~~l~~~~~  104 (177)
                      .+...-..+.+|+.+.+-+..-++
T Consensus        83 ~~Yp~r~AF~~L~~i~~eF~~~~~  106 (140)
T d1ioua_          83 KQYPVRPAYTLLNKILDEYLVAHP  106 (140)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHcC
Confidence            999999999999988776644443

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=4.7  Score=27.11  Aligned_cols=93  Identities=12%  Similarity=0.035  Sum_probs=54.0

Q ss_pred             ceeeEEEEcCCCCEeEE-ecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcE--EEEEEecCC
Q 030448            6 SIKNILLLDSEGKRVAV-KYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDL--HFFVTGGED   82 (177)
Q Consensus         6 mI~~i~iln~~G~~il~-k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl--~~~~v~~~~   82 (177)
                      ||..+.|++..|=++-+ +-+.+. ..     .-...+.+.+.-.. +...+-+.++++.+-|+..+++  .|+++=..=
T Consensus         1 MiD~f~IftkGGiVLW~~~~~~~~-~~-----~~IN~LI~~vlLEE-R~~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~i   73 (129)
T d2fh5a1           1 MVDFFTIFSKGGLVLWCFQGVSDS-CT-----GPVNALIRSVLLQE-RGGNNSFTHEALTLKYKLDNQFELVFVVGFQKI   73 (129)
T ss_dssp             SCSEEEEEETTSBEEEEEBTTTBS-CC-----CHHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCG
T ss_pred             CccEEEEEeCCeEEEEeecCCCcc-cc-----hhHHHHHHHhheec-ccCCCceeECCEEEEEEEeccCCEEEEEEEhhh
Confidence            88999999988888886 334332 11     12233444432221 2223558889999999988865  455554444


Q ss_pred             ccHHHHHHHHHHHHHHHHhhccC
Q 030448           83 ENELILATVLQGFFDAVGLLLRG  105 (177)
Q Consensus        83 eNel~l~e~L~~i~~~l~~~~~~  105 (177)
                      -+-.-+-.+|+.+...+.+.+++
T Consensus        74 l~l~yvd~lL~~i~~~F~~~y~~   96 (129)
T d2fh5a1          74 LTLTYVDKLIDDVHRLFRDKYRT   96 (129)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTHH
T ss_pred             hchHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666654