Citrus Sinensis ID: 030491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAPTHMWKTRYCFLAPMHT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHccccccccccccHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccHHHHHHcccccccccccEHHHHcccccccccccccccccHHHHHHcHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
MDSDFWTSRLAAAKRQYTLQQhhhqssqidrlsiddfeveddvrpdfpcpycyedfdiaslcshledehsceskvtvcpicsVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVtstedtsaksaapthmwktrycflapmht
Flexible Loop (DISEMBL)
MDSDFWTSRLAAAKRQYTLqqhhhqssqidrlsIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLqhghlfklqrrRRLRRVAIPSsqalsllgrDLREAHLQVLLGeaeeisksvvtstedtsaksaapthmwKTRYCFLAPMHT
Low Complexity Region (SEG)
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQrrrrlrrVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAPTHMWKTRYCFLAPMHT
Disordered region (IsUnstruct)
******************************RLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGE***********************HMWKTRYCFLA****
Disordered Region (DISOPRED)
**SDFWTSRLA***********************DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLF****************************A********************************MWKTRYCFLAPM**
Disordered Region (DISEMBL)
MDSDFWTSRLAAAKR**************DRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHL*********VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEIS****************PTHMWKTRYCFLAPMHT
Disordered Region (DISPRO)
*****WTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRV*IPSSQALSLLGRDLREAHLQVLLGE***********************HMWKTRYCFLA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAPTHMWKTRYCFLAPMHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q688X9	226	Protein DEHYDRATION-INDUC	yes	no	0.818	0.637	0.576	8e-44
Q6H6E6	245	Protein DEHYDRATION-INDUC	no	no	0.852	0.612	0.564	3e-43
Q5QMP3	246	Protein DEHYDRATION-INDUC	no	no	0.846	0.605	0.493	1e-33
Q6NM26	222	Protein DEHYDRATION-INDUC	yes	no	0.744	0.590	0.441	4e-28
Q84J70	223	Protein DEHYDRATION-INDUC	no	no	0.75	0.591	0.423	2e-27
Q39083	206	Protein DEHYDRATION-INDUC	no	no	0.744	0.635	0.413	9e-27
Q9FJ17	211	Protein DEHYDRATION-INDUC	no	no	0.659	0.549	0.474	2e-25
Q5W794	233	Protein DEHYDRATION-INDUC	no	no	0.556	0.420	0.479	7e-23
Q8VXU6	224	Protein DEHYDRATION-INDUC	no	no	0.568	0.446	0.509	1e-20
O04259	214	Protein DEHYDRATION-INDUC	no	no	0.380	0.313	0.417	5e-13

>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1

 Score =  176 bits (446), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 107/151 (70%), Gaps = 7/151 (4%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDS+ W SRLAAAKR Y  Q  H      DR  +++ +++++VRP+F CPYCYED D+ S
Sbjct: 1   MDSEHWISRLAAAKRFYAAQLGH-----ADRAGMEEVDMDEEVRPEFACPYCYEDHDVVS 55

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC+HLE+EH  E     CPICS K+A+DML+HIT+QHG+LFK   RRRLRR  IP SQAL
Sbjct: 56  LCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFK--NRRRLRRFVIPGSQAL 113

Query: 121 SLLGRDLREAHLQVLLGEAEEISKSVVTSTE 151
           SLL RDLREAHLQVLLG     S +   +T 
Sbjct: 114 SLLSRDLREAHLQVLLGGGGHRSNNSSNTTN 144

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/163 (56%), Positives = 113/163 (69%), Gaps = 13/163 (7%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQ-------------IDRLSIDDFEVEDDVRPDF 47
           MDSD W SRL AAKRQY LQ+  +                 +DR   DD E ED+VRPDF
Sbjct: 1   MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRYGYDDVEPEDEVRPDF 60

Query: 48  PCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRR 107
           PCPYCYED DI SLC+HLEDEH  ESKV  CP+CS ++++D+L HITLQH +LF+LQR  
Sbjct: 61  PCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHH 120

Query: 108 RLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTST 150
           RLRRVA+PS+ ALSL GRDL+E +L+VLLG +   S +   S+
Sbjct: 121 RLRRVAVPSNHALSLGGRDLQETYLKVLLGNSSRSSGTNAASS 163

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5QMP3|DI193_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 98/166 (59%), Gaps = 17/166 (10%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVR---------------P 45
           MDS+ W S LAAAKR Y  Q  H        +   + E+EDD                 P
Sbjct: 1   MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWP 60

Query: 46  DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQR 105
           D  CPYCYED DIASLC+HLE++H  E   + CPIC  K+ RDML+HIT+QHG+LFK   
Sbjct: 61  DVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFK--S 118

Query: 106 RRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTE 151
            RR+RR  IP SQALSLL RDLR+A LQ LLG      +S  T+T 
Sbjct: 119 GRRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATN 164

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 5/136 (3%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W+ RLA+A R+Y L      S   + L  ++ E EDD R ++ CP+C + FDI S
Sbjct: 1   MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC H++++H  ++K  VCPIC+VKV+ DM++HITLQH ++FK+ R+R+ RR    S   L
Sbjct: 58  LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQS--ML 115

Query: 121 SLLGRDLREAHLQVLL 136
           S+L R+  + + Q L 
Sbjct: 116 SILKREFPDGNFQSLF 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 88/137 (64%), Gaps = 5/137 (3%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W+ RLA+A R+Y L      S     L  ++ + E++ R +F CP+C + FDI S
Sbjct: 1   MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC H++++H  E+K  VCP+C+V+V  DM++HITLQH ++FK+ R+R+ RR    S   L
Sbjct: 58  LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGG--SYSTL 115

Query: 121 SLLGRDLREAHLQVLLG 137
           S+L R+  + + Q L G
Sbjct: 116 SILRREFPDGNFQSLFG 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2

 Score =  119 bits (298), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 14/145 (9%)

Query: 32  LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
           +  ++ + +DD + +F CP+C E +DI  LC H++DEH+ ESK  VCP+CS+KV  D+++
Sbjct: 20  MGFEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVA 79

Query: 92  HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTE 151
           HITL HG LFKLQR+R+ R+    S+  LSLL ++LRE  LQ LLG          TS  
Sbjct: 80  HITLHHGSLFKLQRKRKSRKSGTNST--LSLLRKELREGDLQRLLG---------FTSRN 128

Query: 152 DTSAKSAAPTHMWKTRYCFLAPMHT 176
            + A S  P  +  +   F++P  +
Sbjct: 129 GSVASSVTPDPLLSS---FISPTRS 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 2/118 (1%)

Query: 32  LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
           L + D E EDD++ +F CP+C ++FDI  LC H++  H  E+K  VCP+C+ KV  D++ 
Sbjct: 28  LYLGDVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVG 87

Query: 92  HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTS 149
           HIT QHG++FK+QRRRRLR+    SS  L+ L ++LREA+LQ L G +  I  S + S
Sbjct: 88  HITTQHGNVFKVQRRRRLRKGGY-SSTYLT-LKKELREANLQSLGGSSTFIPSSNIDS 143

Involved in both red and blue light signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2

 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 69/98 (70%)

Query: 47  FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRR 106
           + CP+C EDFD  + C H++DEH+ E+K  VCPIC+ +V  D++ H+T+QHG  FK+QRR
Sbjct: 54  YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113

Query: 107 RRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISK 144
           RR+R+++  S   LSLL +DLR+  LQ  LG +  +S 
Sbjct: 114 RRVRKISSGSHSLLSLLRKDLRDGSLQSFLGGSSYVSN 151

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 35  DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHIT 94
           +D E EDD++ +F CP+C EDFDI  LC H+++EH  E+K  VCP+C+ +V  D++ HIT
Sbjct: 35  EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHIT 94

Query: 95  LQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLL 136
            QH + FK+QRRRRLRR    S+     L ++LREA+LQ LL
Sbjct: 95  TQHANFFKVQRRRRLRRGGYSSTYL--ALKKELREANLQSLL 134

Arabidopsis thaliana (taxid: 3702)

>sp|O04259|DI195_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana GN=DI19-5 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 47/67 (70%)

Query: 36  DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
           +FE +D++  D+PCP+C +D+D+  LC H+++EH  ++   +CP+CS +V   M+ HIT 
Sbjct: 32  EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITT 91

Query: 96  QHGHLFK 102
           QH  +FK
Sbjct: 92  QHRDVFK 98

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
255536745	231	conserved hypothetical protein [Ricinus	0.948	0.722	0.747	2e-73
225443618	231	PREDICTED: protein DEHYDRATION-INDUCED 1	0.948	0.722	0.727	1e-70
356521402	233	PREDICTED: protein DEHYDRATION-INDUCED 1	0.948	0.716	0.71	2e-67
356548672	237	PREDICTED: protein DEHYDRATION-INDUCED 1	0.948	0.704	0.691	1e-64
217075142	234	unknown [Medicago truncatula] gi|3884911	0.948	0.713	0.666	2e-64
449433818	199	PREDICTED: protein DEHYDRATION-INDUCED 1	0.937	0.829	0.732	5e-64
388508052	176	unknown [Medicago truncatula]	0.857	0.857	0.767	6e-59
224125558	268	predicted protein [Populus trichocarpa]	0.937	0.615	0.611	4e-57
118483033	180	unknown [Populus trichocarpa]	0.869	0.85	0.779	3e-55
192910804	230	fiber protein Fb2 [Elaeis guineensis]	0.931	0.713	0.617	9e-55

>gi|255536745|ref|XP_002509439.1| conserved hypothetical protein [Ricinus communis] gi|223549338|gb|EEF50826.1| conserved hypothetical protein [Ricinus communis]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/198 (74%), Positives = 160/198 (80%), Gaps = 31/198 (15%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSR+AAAKRQYTLQ HHHQS  +DRL+IDDFEVED+VRPDFPCPYCYEDFDI S
Sbjct: 1   MDSDFWTSRIAAAKRQYTLQ-HHHQSYHLDRLNIDDFEVEDEVRPDFPCPYCYEDFDITS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIP+SQAL
Sbjct: 60  LCSHLEDEHSCESRVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPNSQAL 119

Query: 121 SLLGRDLREAHLQVLLG------------------------------EAEEISKSVVTST 150
           SLLGRDLREAHLQ+LLG                              EAEEISKSVVTS 
Sbjct: 120 SLLGRDLREAHLQMLLGGGGYRSNNGNVSNAATDPFLSSLILNFPTSEAEEISKSVVTSV 179

Query: 151 EDTSAKSAAPTHMWKTRY 168
           ED  AK+AAPT+MW++ +
Sbjct: 180 EDAPAKTAAPTNMWRSSF 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443618|ref|XP_002279435.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Vitis vinifera]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/198 (72%), Positives = 153/198 (77%), Gaps = 31/198 (15%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           M++DFW SRLAAAKRQY LQ HHH SSQ+DRLSIDDFEVED+ RPDFPCPYCYED+DIAS
Sbjct: 1   MNTDFWASRLAAAKRQYALQ-HHHNSSQLDRLSIDDFEVEDEARPDFPCPYCYEDYDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL
Sbjct: 60  LCSHLEDEHSCESRVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 119

Query: 121 SLLGRDLREAHLQVLLG------------------------------EAEEISKSVVTST 150
           SLLGRDLREAHLQVLLG                              EAEEISKSV +S 
Sbjct: 120 SLLGRDLREAHLQVLLGSGGYRSSIANASNTVTDQFLSSLGLNFSATEAEEISKSVSSSA 179

Query: 151 EDTSAKSAAPTHMWKTRY 168
           EDTS   A   H WK+ +
Sbjct: 180 EDTSTMKAVSAHAWKSSF 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521402|ref|XP_003529345.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Glycine max]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/200 (71%), Positives = 158/200 (79%), Gaps = 33/200 (16%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQYTLQ HHH +S +DRL IDDF+VE++VRPDFPCPYCYEDFDIAS
Sbjct: 1   MDSDFWTSRLAAAKRQYTLQ-HHHPNSHLDRLGIDDFDVEEEVRPDFPCPYCYEDFDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           L SHLEDEHSCES+VT+CPICSVKVARDML+HITLQHGHLFKLQRRRRLRRVAIP+SQ L
Sbjct: 60  LSSHLEDEHSCESRVTICPICSVKVARDMLNHITLQHGHLFKLQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLLG--------------------------------EAEEISKSVVT 148
           SLLGRDLREAHLQVLLG                                EAEEISKSVVT
Sbjct: 120 SLLGRDLREAHLQVLLGGGGGYRSNSAAVSNAAATDPFLSSFILNFPACEAEEISKSVVT 179

Query: 149 STEDTSAKSAAPTHMWKTRY 168
           S +D+S+K+A P H+WK+ +
Sbjct: 180 SADDSSSKNATPVHIWKSSF 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548672|ref|XP_003542724.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Glycine max]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/204 (69%), Positives = 157/204 (76%), Gaps = 37/204 (18%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQYTLQ HHH +S +DRL IDDF++E++VRPDFPCPYCYEDFDIAS
Sbjct: 1   MDSDFWTSRLAAAKRQYTLQ-HHHPNSHLDRLGIDDFDMEEEVRPDFPCPYCYEDFDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VT+CPICS KVAR+MLSHITLQHGHL KLQRRRRLRRVAIP+SQ L
Sbjct: 60  LCSHLEDEHSCESRVTICPICSDKVARNMLSHITLQHGHLLKLQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLLG------------------------------------EAEEISK 144
           SLLGRDLREAHLQVLLG                                    EAEEISK
Sbjct: 120 SLLGRDLREAHLQVLLGGGGGGGYRSNSVAAAVSNAAATDPFLSSFILNFPACEAEEISK 179

Query: 145 SVVTSTEDTSAKSAAPTHMWKTRY 168
           SVVTS E++SAK+A P H+WK+ +
Sbjct: 180 SVVTSAENSSAKNATPEHIWKSSF 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075142|gb|ACJ85931.1| unknown [Medicago truncatula] gi|388491118|gb|AFK33625.1| unknown [Medicago truncatula]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 152/201 (75%), Gaps = 34/201 (16%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDS+FWTSRLAAAKR Y LQ H+H +S +DRL IDDF+VE++VRPDFPCPYCYE+FDI S
Sbjct: 1   MDSEFWTSRLAAAKRHYALQ-HNHPTSHLDRLGIDDFDVEEEVRPDFPCPYCYEEFDIGS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VT+CP+CSVKVARDMLSHITLQHGHLFK+QRRRRLRRVAIP+SQ L
Sbjct: 60  LCSHLEDEHSCESRVTICPVCSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLLG-------------------------------EAEEISKSVVTS 149
           SLLGRDLREAHLQVLL                                EAEEISKSVVTS
Sbjct: 120 SLLGRDLREAHLQVLLNGGGGYRSHSNTVTNASADPFLSSFILNYPACEAEEISKSVVTS 179

Query: 150 TEDTSAKSAAP--THMWKTRY 168
            ED+S K+      H+WK+ +
Sbjct: 180 AEDSSTKNTTTPVQHIWKSSF 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433818|ref|XP_004134694.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Cucumis sativus] gi|449529572|ref|XP_004171772.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Cucumis sativus]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 146/168 (86%), Gaps = 3/168 (1%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQY LQ HHHQ+S +D L IDD E++DD RP FPCP+CYE+FD+ S
Sbjct: 1   MDSDFWTSRLAAAKRQYMLQ-HHHQASNLDLLGIDDLEMDDDTRPHFPCPFCYENFDVMS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCE++VTVCPICSVKV  DMLSHITL HGHL+KLQRRRRLR+++IP+SQAL
Sbjct: 60  LCSHLEDEHSCETRVTVCPICSVKVMGDMLSHITLHHGHLYKLQRRRRLRKISIPNSQAL 119

Query: 121 SLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAPTHMWKTRY 168
           SLL RDLREAHLQVLLG    ISKS++TS ED S+++ AP+ +WK+ +
Sbjct: 120 SLLSRDLREAHLQVLLG--SNISKSMLTSAEDVSSENVAPSPIWKSSF 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508052|gb|AFK42092.1| unknown [Medicago truncatula]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 119/155 (76%), Positives = 135/155 (87%), Gaps = 4/155 (2%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDS+FWTSRLAAAKR Y LQ H+H +S +DRL IDDF+VE++VRPDFPCPYCYE+FDI S
Sbjct: 1   MDSEFWTSRLAAAKRHYALQ-HNHPTSHLDRLGIDDFDVEEEVRPDFPCPYCYEEFDIGS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VT+CP+CSVKVARDMLSHITLQHGHLFK+QRRRRLRRVAIP+SQ L
Sbjct: 60  LCSHLEDEHSCESRVTICPVCSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLL---GEAEEISKSVVTSTED 152
           SLLGRDLREAHLQVLL   G     S +V  ++ D
Sbjct: 120 SLLGRDLREAHLQVLLNGGGGYRSHSNTVTNASAD 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125558|ref|XP_002329834.1| predicted protein [Populus trichocarpa] gi|222870896|gb|EEF08027.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 140/229 (61%), Positives = 153/229 (66%), Gaps = 64/229 (27%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           M S+FWTSR+AAAK+QY  Q HH  S Q DR +IDDFEVE++VRPDFPCPYCYEDFDI S
Sbjct: 1   MTSNFWTSRIAAAKQQYASQHHHQSSHQ-DRFNIDDFEVEEEVRPDFPCPYCYEDFDIGS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFK------------------ 102
           LCSHLEDEHS ESKV VCPICSVKVA+DMLSHITLQHGHLFK                  
Sbjct: 60  LCSHLEDEHSYESKVAVCPICSVKVAQDMLSHITLQHGHLFKISLKLKLLLPKCFSFIIR 119

Query: 103 -------------LQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLG------------ 137
                        LQRRRRLRRVAIP+SQALSLLGRDLREAHLQVLLG            
Sbjct: 120 IYAVPKFSLTKDYLQRRRRLRRVAIPNSQALSLLGRDLREAHLQVLLGGGGYRSNNTNAN 179

Query: 138 --------------------EAEEISKSVVTSTEDTSAKSAAPTHMWKT 166
                               EAEEISKSVVTS ED+SAK++AP+HMWK+
Sbjct: 180 VSNASTDPFLSSFILNFHTSEAEEISKSVVTSIEDSSAKNSAPSHMWKS 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483033|gb|ABK93427.1| unknown [Populus trichocarpa]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/154 (77%), Positives = 131/154 (85%), Gaps = 1/154 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           M S+FWTSR+AAAK+QY  Q HH QSS  DR +IDDFEVE++VRPDFPCPYCYEDFDI S
Sbjct: 1   MTSNFWTSRIAAAKQQYASQHHH-QSSHQDRFNIDDFEVEEEVRPDFPCPYCYEDFDIGS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHS ESKV VCPICSVKVA+DMLSHITLQHGHLFKLQRRRRLRRVAIP+SQAL
Sbjct: 60  LCSHLEDEHSYESKVAVCPICSVKVAQDMLSHITLQHGHLFKLQRRRRLRRVAIPNSQAL 119

Query: 121 SLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTS 154
           SLLGRDLREAHLQVLLG     S +   +  + S
Sbjct: 120 SLLGRDLREAHLQVLLGGGGYRSNNTNANVSNAS 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910804|gb|ACF06510.1| fiber protein Fb2 [Elaeis guineensis]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 121/196 (61%), Positives = 136/196 (69%), Gaps = 32/196 (16%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W SRLAAAKR Y+LQQ   Q+ Q DRL IDDFE+E++VR DFPCPYCYED DI S
Sbjct: 1   MDSDLWISRLAAAKRHYSLQQP--QNPQSDRLGIDDFEMEEEVRLDFPCPYCYEDHDITS 58

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEH+ ESK  VCPICSVKVARDML+HIT+QHGH+FKLQRRRRLRR  IPSSQ L
Sbjct: 59  LCSHLEDEHAFESKAAVCPICSVKVARDMLNHITIQHGHIFKLQRRRRLRRFPIPSSQTL 118

Query: 121 SLLGRDLREAHLQVLLG------------------------------EAEEISKSVVTST 150
           SLLGRDLREAHLQ+LLG                              E EE SKS +++ 
Sbjct: 119 SLLGRDLREAHLQLLLGSGAYRSSNNSASNTSADSFLSSLVLNVPTSETEEPSKSSISTA 178

Query: 151 EDTSAKSAAPTHMWKT 166
           EDT  K    +  WK+
Sbjct: 179 EDTCIKKTIASQTWKS 194

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2148528	222	AT5G26990 [Arabidopsis thalian	0.835	0.662	0.392	1.8e-25
TAIR|locus:2078062	223	AT3G05700 [Arabidopsis thalian	0.852	0.672	0.368	4.2e-24
TAIR|locus:2155934	211	HRB1 "HYPERSENSITIVE TO RED AN	0.812	0.677	0.369	1e-20
TAIR|locus:2196125	221	AT1G02750 [Arabidopsis thalian	0.568	0.452	0.346	3.7e-16
TAIR|locus:2083363	234	AT3G06760 [Arabidopsis thalian	0.227	0.170	0.525	7.6e-13
TAIR|locus:2137819	228	AT4G02200 [Arabidopsis thalian	0.380	0.293	0.370	9.1e-13
UNIPROTKB|I3LV30	181	RNF114 "RING finger protein 11	0.221	0.215	0.5	0.00024
UNIPROTKB|Q4U5R4	230	RNF114 "RING finger protein 11	0.221	0.169	0.5	0.00028
MGI|MGI:1933159	229	Rnf114 "ring finger protein 11	0.221	0.170	0.5	0.00037
RGD|1303139	229	Rnf114 "ring finger protein 11	0.221	0.170	0.5	0.00037

TAIR|locus:2148528 AT5G26990 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/153 (39%), Positives = 90/153 (58%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDSD W+ RLA+A R+Y L      S   + L  ++ E EDD R ++ CP+C + FDI S
Sbjct:     1 MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS 57

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++++H  ++K  VCPIC+VKV+ DM++HITLQH ++FK+            S   L
Sbjct:    58 LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQSM--L 115

Query:   121 SLLGRDLREAHLQVLL-GEAEEISKSVVTSTED 152
             S+L R+  + + Q L  G +  +S S  +   D
Sbjct:   116 SILKREFPDGNFQSLFEGTSRAVSSSSASIAAD 148

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2078062 AT3G05700 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/160 (36%), Positives = 91/160 (56%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDSD W+ RLA+A R+Y L      S     L  ++ + E++ R +F CP+C + FDI S
Sbjct:     1 MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS 57

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++++H  E+K  VCP+C+V+V  DM++HITLQH ++FK+            S   L
Sbjct:    58 LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGG--SYSTL 115

Query:   121 SLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAP 160
             S+L R+  + + Q L G       S + S+  +S  +A P
Sbjct:   116 SILRREFPDGNFQSLFG-----GSSCIVSSSSSSNVAADP 150

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2155934 HRB1 "HYPERSENSITIVE TO RED AND BLUE" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 55/149 (36%), Positives = 85/149 (57%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDS+ W +         + +++  +S     L + D E EDD++ +F CP+C ++FDI  
Sbjct:     1 MDSNSWINCPPVFSSSPSSRRYQSRSD----LYLGDVEGEDDLKAEFMCPFCADEFDIVG 56

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++  H  E+K  VCP+C+ KV  D++ HIT QHG++FK+Q           SS  L
Sbjct:    57 LCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGY-SSTYL 115

Query:   121 SLLGRDLREAHLQVLLGEAEEISKSVVTS 149
             +L  ++LREA+LQ L G +  I  S + S
Sbjct:   116 TLK-KELREANLQSLGGSSTFIPSSNIDS 143

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

TAIR|locus:2196125 AT1G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 36/104 (34%), Positives = 59/104 (56%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQH-HHQSSQIDRLSIDDFE-VEDDVRPDFPCPYCYEDFDI 58
             M+ D W    + + R Y  +    +QS     L  ++FE V+DD+  ++PCP+C  D+D+
Sbjct:     1 MEDDMWCVSSSGSSRSYRSETAAKYQSGPYQDL--EEFEEVDDDIAVEYPCPFCASDYDL 58

Query:    59 ASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFK 102
               LC H+++EH  E+   +CP+CS +V   M+ HIT  H  + K
Sbjct:    59 VELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLK 102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2083363 AT3G06760 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query:    35 DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESK 74
             +D E EDD++ +F CP+C EDFDI  LC H+++EH  E+K
Sbjct:    35 EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAK 74

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2137819 AT4G02200 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    36 DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEH-------------SCESKV-TVCPIC 81
             +FE +D++  D+PCP+C +D+D+  LC H+++EH             SC+ ++  +CP+C
Sbjct:    32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVC 91

Query:    82 SVKVARDMLSHITLQHGHLFK 102
             S +V   M+ HIT QH  +FK
Sbjct:    92 SRRVKMHMVDHITTQHRDVFK 112

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

UNIPROTKB|I3LV30 RNF114 "RING finger protein 114" [Sus scrofa (taxid:9823)]

 Score = 104 (41.7 bits), Expect = 0.00024, P = 0.00024
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
             R  FPCPYC E +FD   L  H +  HS ++K  VCPIC+
Sbjct:    91 RYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICA 130

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q4U5R4 RNF114 "RING finger protein 114" [Bos taurus (taxid:9913)]

 Score = 106 (42.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
             R  FPCPYC E +FD   L  H +  HS ++K  VCPIC+
Sbjct:   140 RYTFPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPICA 179

GO:0005622 "intracellular" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1933159 Rnf114 "ring finger protein 114" [Mus musculus (taxid:10090)]

 Score = 105 (42.0 bits), Expect = 0.00037, P = 0.00037
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
             R  FPCPYC E +FD   L  H +  HS ++K  VCPIC+
Sbjct:   139 RYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICA 178

GO:0005622 "intracellular" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1303139 Rnf114 "ring finger protein 114" [Rattus norvegicus (taxid:10116)]

 Score = 105 (42.0 bits), Expect = 0.00037, P = 0.00037
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
             R  FPCPYC E +FD   L  H +  HS ++K  VCPIC+
Sbjct:   139 RYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICA 178

GO:0005622 "intracellular" evidence=IEA;ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q688X9	DI191_ORYSJ	No assigned EC number	0.5761	0.8181	0.6371	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1240071 hypothetical protein (268 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam05605	209	pfam05605, Di19, Drought induced 19 protein (Di19)	5e-51

>gnl|CDD|218654 pfam05605, Di19, Drought induced 19 protein (Di19)

 Score =  162 bits (412), Expect = 5e-51
 Identities = 71/136 (52%), Positives = 92/136 (67%), Gaps = 6/136 (4%)

Query: 10  LAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEH 69
            A+A   Y            D    +D E ED+VR +FPCP+CYEDFDI SLC H+++EH
Sbjct: 1   HASASASYQRALPSRS----DLYLFEDIEGEDEVREEFPCPFCYEDFDIVSLCCHIDEEH 56

Query: 70  SCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLRE 129
             E+K  VCP+C+ +V +DM++HIT+QHGHLFK+QRRRRLRR    SS ALSLL R+LR+
Sbjct: 57  PFEAKNGVCPVCADRVGKDMVAHITVQHGHLFKMQRRRRLRR--GGSSSALSLLKRELRD 114

Query: 130 AHLQVLLGEAEEISKS 145
            +LQ LLG +   S S
Sbjct: 115 GNLQSLLGSSCMSSSS 130

This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. The precise function of Di19 is unknown. Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	99.82
PF14571	105	Di19_C: Stress-induced protein Di19, C-terminal	98.93
KOG1280	381	consensus Uncharacterized conserved protein contai	98.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	95.2
COG5216	67	Uncharacterized conserved protein [Function unknow	94.85
KOG2923	67	consensus Uncharacterized conserved protein [Funct	94.82
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.68
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.72
PLN03086	567	PRLI-interacting factor K; Provisional	93.43
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	93.1
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	92.41
PHA00732	79	hypothetical protein	91.34
PHA00733	128	hypothetical protein	90.96
smart00531	147	TFIIE Transcription initiation factor IIE.	90.63
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	90.58
PLN03086	567	PRLI-interacting factor K; Provisional	88.78
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	88.78
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	88.63
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	88.61
PRK09710	64	lar restriction alleviation and modification prote	88.15
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	87.56
PHA02768	55	hypothetical protein; Provisional	87.55
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	86.98
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	86.59
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	86.34
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	86.33
PRK14892	99	putative transcription elongation factor Elf1; Pro	84.82
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	83.82
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.18
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	81.76
KOG1842	505	consensus FYVE finger-containing protein [General	80.26
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	80.03

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=99.82  E-value=1.1e-20  Score=127.08  Aligned_cols=54  Identities=48%  Similarity=0.938  Sum_probs=52.1

Q ss_pred             CcccCCCCCCCCCHHHHHhhhhhhccCCCcceecCcccccchhhHHHHhhhhcc
Q 030491           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHG   98 (176)
Q Consensus        45 ~~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~s~d~l~HL~~rH~   98 (176)
                      ++|+||||+++||+.+|++|++++|+.+.++||||||+.+++.||++||+.+|+
T Consensus         1 ~~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    1 DSFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVTDNLIRHLNSQHR   54 (54)
T ss_pred             CCcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhhhHHHHHHHHhcC
Confidence            379999999999999999999999999999999999999999999999999996

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF14571 Di19_C: Stress-induced protein Di19, C-terminal

Probab=98.93  E-value=3.6e-10  Score=86.34  Aligned_cols=50  Identities=46%  Similarity=0.518  Sum_probs=43.2

Q ss_pred             hHhhhhhhhhhhhhHHHhcc----------------------------cchhhcccccccccccccccCCcCCccccc
Q 030491          119 ALSLLGRDLREAHLQVLLGE----------------------------AEEISKSVVTSTEDTSAKSAAPTHMWKTRY  168 (176)
Q Consensus       119 ~ls~l~kelre~~lq~llg~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (176)
                      |||||||||||||||+||||                            +++++|+..++.++++.++..+.+.|+++.
T Consensus         1 tlsll~kelre~~LQsllGgs~~~~~~ssn~apDPLLSSFI~n~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~   78 (105)
T PF14571_consen    1 TLSLLRKELREGYLQSLLGGSRSSSSSSSNSAPDPLLSSFICNFPAPEAEEPSKSSSSSEEKKSSKKSSSEQNVKSSA   78 (105)
T ss_pred             CcchhhhhhhhhhhhhhcCCCcCCCCCCCCCCCcHHHHHHhcCCCCccccccCCccccccccccccccchhccccccc
Confidence            68999999999999999994                            356677777888899999999999998654

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=98.68  E-value=1.6e-08  Score=91.66  Aligned_cols=70  Identities=21%  Similarity=0.466  Sum_probs=56.6

Q ss_pred             cccccc-cCCCCCCCCCCCCCcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc---------hhhHHHHhh
Q 030491           26 SSQIDR-LSIDDFEVEDDVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV---------ARDMLSHIT   94 (176)
Q Consensus        26 rs~~d~-~g~d~~~~ddd~r~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~---------s~d~l~HL~   94 (176)
                      |-++++ ||+|-+..+++.  .|+||||++ +|.+..+.+|+...|+.-...+|||||++.+         ..+...|+.
T Consensus        60 ~~dfeL~f~Ge~i~~y~~q--SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~~~~~qp~~~~~~~~~~~~~~  137 (381)
T KOG1280|consen   60 RVDFELYFGGEPISHYDPQ--SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAANPEMQPIHSKETENLSVHWT  137 (381)
T ss_pred             ccceeeEecCccccccccc--cccCCcccccccchhHHHHHhhhcCcccCcceeeeccccCcccCchhhhhhhhhhhhhh
Confidence            356665 788877775544  999999999 9999999999999999999999999999986         335555555


Q ss_pred             hhc
Q 030491           95 LQH   97 (176)
Q Consensus        95 ~rH   97 (176)
                      ..|
T Consensus       138 ~~a  140 (381)
T KOG1280|consen  138 EIA  140 (381)
T ss_pred             hhc
Confidence            444

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=95.20  E-value=0.015  Score=31.21  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=17.3

Q ss_pred             ccCCCCCC-CCCHHHHHhhhhhhc
Q 030491           47 FPCPYCYE-DFDIASLCSHLEDEH   69 (176)
Q Consensus        47 F~CPFC~e-~fDv~~L~~H~~eeH   69 (176)
                      |.||+|+. --+..+|..|+...|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            68999988 777888888888766

...

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=0.014  Score=41.79  Aligned_cols=35  Identities=31%  Similarity=0.765  Sum_probs=25.7

Q ss_pred             CCCCcccCCCCCC--CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           42 DVRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        42 d~r~~F~CPFC~e--~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      +..-+|+|| ||.  ++....|.        ..-..++||-|+-++
T Consensus        18 ~~~ftyPCP-CGDRFeIsLeDl~--------~GE~VArCPSCSLiv   54 (67)
T COG5216          18 EKTFTYPCP-CGDRFEISLEDLR--------NGEVVARCPSCSLIV   54 (67)
T ss_pred             CceEEecCC-CCCEeEEEHHHhh--------CCceEEEcCCceEEE
Confidence            445789999 888  55555553        345678999999876

>KOG2923 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=0.02  Score=41.35  Aligned_cols=45  Identities=33%  Similarity=0.762  Sum_probs=30.3

Q ss_pred             cCCCCCC-CCCCCCCcccCCCCCCC--CCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           32 LSIDDFE-VEDDVRPDFPCPYCYED--FDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        32 ~g~d~~~-~ddd~r~~F~CPFC~e~--fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      ..++|++ .+|...-+|+|| ||..  +....|.        ..-..++||-|+-.+
T Consensus         7 Veiedfe~~~e~~~y~yPCp-CGDrf~It~edL~--------~ge~Va~CpsCSL~I   54 (67)
T KOG2923|consen    7 VEIEDFEFDEENQTYYYPCP-CGDRFQITLEDLE--------NGEDVARCPSCSLII   54 (67)
T ss_pred             EEeecceeccCCCeEEcCCC-CCCeeeecHHHHh--------CCCeeecCCCceEEE
Confidence            3456666 344456789999 9984  4444443        345678999999875

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.68  E-value=0.025  Score=39.38  Aligned_cols=28  Identities=25%  Similarity=0.714  Sum_probs=19.6

Q ss_pred             CCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           72 ESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        72 e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      ......||||.+.+  ++|+-+||-+.|+.
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            34568999999986  78999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.72  E-value=0.057  Score=31.50  Aligned_cols=21  Identities=33%  Similarity=0.668  Sum_probs=18.9

Q ss_pred             cccCCCCCCCCCHHHHHhhhh
Q 030491           46 DFPCPYCYEDFDIASLCSHLE   66 (176)
Q Consensus        46 ~F~CPFC~e~fDv~~L~~H~~   66 (176)
                      ..+||+||..|....|-.|..
T Consensus         2 l~~C~~CgR~F~~~~l~~H~~   22 (25)
T PF13913_consen    2 LVPCPICGRKFNPDRLEKHEK   22 (25)
T ss_pred             CCcCCCCCCEECHHHHHHHHH
Confidence            568999999999999999964

>PLN03086 PRLI-interacting factor K; Provisional

Probab=93.43  E-value=0.089  Score=50.86  Aligned_cols=49  Identities=22%  Similarity=0.482  Sum_probs=38.8

Q ss_pred             CCcccCCCCCCCCCHHHHHhhhhhhccCCCcceecCccccc-chhhHHHHhhhhc
Q 030491           44 RPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK-VARDMLSHITLQH   97 (176)
Q Consensus        44 r~~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~-~s~d~l~HL~~rH   97 (176)
                      ..-+.||+|++.|....|-.|....|    +.+.|| |... ...+|..|+....
T Consensus       451 ~~H~~C~~Cgk~f~~s~LekH~~~~H----kpv~Cp-Cg~~~~R~~L~~H~~thC  500 (567)
T PLN03086        451 KNHVHCEKCGQAFQQGEMEKHMKVFH----EPLQCP-CGVVLEKEQMVQHQASTC  500 (567)
T ss_pred             ccCccCCCCCCccchHHHHHHHHhcC----CCccCC-CCCCcchhHHHhhhhccC
Confidence            34679999999899999999999866    679999 9654 4678888876433

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.10  E-value=0.051  Score=29.82  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=15.4

Q ss_pred             ccCCCCCC-CCCHHHHHhhhhh
Q 030491           47 FPCPYCYE-DFDIASLCSHLED   67 (176)
Q Consensus        47 F~CPFC~e-~fDv~~L~~H~~e   67 (176)
                      |.||.|++ --+...|..|+..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            67888888 5566777777765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=92.41  E-value=0.09  Score=36.71  Aligned_cols=49  Identities=20%  Similarity=0.517  Sum_probs=15.5

Q ss_pred             cCCCCCC-CCCHHHHHhhhhhhccCCCc---------------------ceecCcccccc--hhhHHHHhhhh
Q 030491           48 PCPYCYE-DFDIASLCSHLEDEHSCESK---------------------VTVCPICSVKV--ARDMLSHITLQ   96 (176)
Q Consensus        48 ~CPFC~e-~fDv~~L~~H~~eeH~~e~k---------------------~vVCPICaa~~--s~d~l~HL~~r   96 (176)
                      .|+||+. --++..|..|+...|.+...                     ...|++|....  ...+..||...
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            3999999 45688999999999986321                     13499998875  56889999754

>PHA00732 hypothetical protein

Probab=91.34  E-value=0.24  Score=36.17  Aligned_cols=42  Identities=29%  Similarity=0.652  Sum_probs=32.0

Q ss_pred             ccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccchhhHHHHh
Q 030491           47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHI   93 (176)
Q Consensus        47 F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~s~d~l~HL   93 (176)
                      |.|+.|++ --....|..|....|..    ..|++|...-. ++..|+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~----~~C~~CgKsF~-~l~~H~   44 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL----TKCPVCNKSYR-RLNQHF   44 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC----CccCCCCCEeC-Chhhhh
Confidence            78999999 44788899999866653    26999987654 466666

>PHA00733 hypothetical protein

Probab=90.96  E-value=0.37  Score=37.82  Aligned_cols=50  Identities=26%  Similarity=0.618  Sum_probs=37.5

Q ss_pred             CcccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           45 PDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        45 ~~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      ..|.|+.|++. -....|..|... |   .....|++|....  ..+|..|+..-|+
T Consensus        72 kPy~C~~Cgk~Fss~s~L~~H~r~-h---~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         72 SPYVCPLCLMPFSSSVSLKQHIRY-T---EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCccCCCCCCcCCCHHHHHHHHhc-C---CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            36999999994 556778888874 2   2346999997764  6788999887775

>smart00531 TFIIE Transcription initiation factor IIE

Probab=90.63  E-value=0.24  Score=39.27  Aligned_cols=38  Identities=18%  Similarity=0.535  Sum_probs=26.2

Q ss_pred             CCCcccCCCCCCCCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           43 VRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        43 ~r~~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      ....|.||.|+..|+..+-.....   .  ....+||.|-..+
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~~d---~--~~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQLLD---M--DGTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHhcC---C--CCcEECCCCCCEE
Confidence            466999999999666544333222   1  3458999998875

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=90.58  E-value=0.2  Score=27.95  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=16.2

Q ss_pred             ccCCCCCCCCCHHHHHhhhhhhcc
Q 030491           47 FPCPYCYEDFDIASLCSHLEDEHS   70 (176)
Q Consensus        47 F~CPFC~e~fDv~~L~~H~~eeH~   70 (176)
                      |.||+|.-.-....|..|++..|+
T Consensus         1 y~C~~C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EESHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHhhCc
Confidence            678888772237788888888774

>PLN03086 PRLI-interacting factor K; Provisional

Probab=88.78  E-value=0.48  Score=45.96  Aligned_cols=37  Identities=19%  Similarity=0.493  Sum_probs=23.7

Q ss_pred             cccCCCCCCCCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        46 ~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      .+.|| |+..+....|..|... |+. .+.+.|+.|...+
T Consensus       478 pv~Cp-Cg~~~~R~~L~~H~~t-hCp-~Kpi~C~fC~~~v  514 (567)
T PLN03086        478 PLQCP-CGVVLEKEQMVQHQAS-TCP-LRLITCRFCGDMV  514 (567)
T ss_pred             CccCC-CCCCcchhHHHhhhhc-cCC-CCceeCCCCCCcc
Confidence            46777 7776677777777643 443 3667777776554

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=88.78  E-value=0.32  Score=43.49  Aligned_cols=37  Identities=24%  Similarity=0.600  Sum_probs=25.8

Q ss_pred             CCcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCccccc
Q 030491           44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        44 r~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~   84 (176)
                      +..|.||+|++ .+....|--|+...    .-.-+|+||-..
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH----~l~c~C~iCGKa  196 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTH----TLPCECGICGKA  196 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhcc----CCCccccccccc
Confidence            56788888888 88888888888754    124455555544

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.63  E-value=0.18  Score=32.35  Aligned_cols=33  Identities=30%  Similarity=0.649  Sum_probs=20.8

Q ss_pred             ccCCCCCCCCCHHHHHhhhhhhccCCCcceecCcccccchhhH
Q 030491           47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDM   89 (176)
Q Consensus        47 F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~s~d~   89 (176)
                      |.||.|+... +      ..+   ......||+.|-..+..+.
T Consensus         1 m~Cp~Cg~~~-~------~~D---~~~g~~vC~~CG~Vl~e~~   33 (43)
T PF08271_consen    1 MKCPNCGSKE-I------VFD---PERGELVCPNCGLVLEENI   33 (43)
T ss_dssp             ESBTTTSSSE-E------EEE---TTTTEEEETTT-BBEE-TT
T ss_pred             CCCcCCcCCc-e------EEc---CCCCeEECCCCCCEeeccc
Confidence            6899999832 1      111   4466789999988775544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=88.61  E-value=0.11  Score=34.90  Aligned_cols=31  Identities=26%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCC---cceecCcccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCES---KVTVCPICSV   83 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~---k~vVCPICaa   83 (176)
                      .-+|||||. .+.+..       ....+.   -.|.|..|.+
T Consensus         3 LkPCPFCG~~~~~~~~-------~~~~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    3 LKPCPFCGSADVLIRQ-------DEGFDYGMYYYVECTDCGA   37 (61)
T ss_pred             CcCCCCCCCcceEeec-------ccCCCCCCEEEEEcCCCCC
Confidence            568999997 554433       222222   4678999977

>PRK09710 lar restriction alleviation and modification protein; Reviewed

Probab=88.15  E-value=0.19  Score=36.11  Aligned_cols=30  Identities=20%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCccccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~   84 (176)
                      .=+|||||. .+.+.         |....-.++|.-|-+.
T Consensus         6 lKPCPFCG~~~~~v~---------~~~g~~~v~C~~CgA~   36 (64)
T PRK09710          6 VKPCPFCGCPSVTVK---------AISGYYRAKCNGCESR   36 (64)
T ss_pred             ccCCCCCCCceeEEE---------ecCceEEEEcCCCCcC
Confidence            458999999 66554         2333446999999886

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=87.56  E-value=0.18  Score=34.76  Aligned_cols=30  Identities=20%  Similarity=0.678  Sum_probs=21.7

Q ss_pred             cccCCCCCCCCCHHHHHhhhhhhccCCCcceecCccccc
Q 030491           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        46 ~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~   84 (176)
                      .|.||-||+.+++....         ..-.|.||.|.+.
T Consensus         2 ~~~CP~CG~~iev~~~~---------~GeiV~Cp~CGae   31 (54)
T TIGR01206         2 QFECPDCGAEIELENPE---------LGELVICDECGAE   31 (54)
T ss_pred             ccCCCCCCCEEecCCCc---------cCCEEeCCCCCCE
Confidence            58999999977554332         1337899999876

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PHA02768 hypothetical protein; Provisional

Probab=87.55  E-value=0.5  Score=32.86  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCccccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~   84 (176)
                      .|.||.||+ =...+.|..|....+    ++..|..|..-
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~----k~~kc~~C~k~   40 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN----TNLKLSNCKRI   40 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC----CcccCCcccce
Confidence            489999999 556778999999844    45567777553

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=86.98  E-value=0.28  Score=41.74  Aligned_cols=44  Identities=25%  Similarity=0.709  Sum_probs=27.6

Q ss_pred             CCcccCCCCCCCCC--HHHHHhh-----hhhhcc--------------CCCcceecCcccccchh
Q 030491           44 RPDFPCPYCYEDFD--IASLCSH-----LEDEHS--------------CESKVTVCPICSVKVAR   87 (176)
Q Consensus        44 r~~F~CPFC~e~fD--v~~L~~H-----~~eeH~--------------~e~k~vVCPICaa~~s~   87 (176)
                      ...|.||.|.+.+.  +...|.|     |....-              ...+...||+|...++.
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            45799999988332  3445666     343321              12345689999998754

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=86.59  E-value=0.53  Score=29.01  Aligned_cols=33  Identities=18%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             cccCCCCCCCCCHHHHHhhhhhhccCCCcceecCccccc
Q 030491           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        46 ~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~   84 (176)
                      .+.||.|+..|.+..-      ....+...+.||.|-..
T Consensus         2 ~~~CP~C~~~~~v~~~------~~~~~~~~v~C~~C~~~   34 (38)
T TIGR02098         2 RIQCPNCKTSFRVVDS------QLGANGGKVRCGKCGHV   34 (38)
T ss_pred             EEECCCCCCEEEeCHH------HcCCCCCEEECCCCCCE
Confidence            3689999984443321      11233347889999754

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=86.34  E-value=0.15  Score=31.49  Aligned_cols=32  Identities=19%  Similarity=0.616  Sum_probs=21.8

Q ss_pred             CcccCCCCCCCCCHHHHHhhhhhhccCCCcceecCccccc
Q 030491           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        45 ~~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~   84 (176)
                      .+|.||-||..|++..-.        .+...++||.|.+.
T Consensus         4 Y~y~C~~Cg~~fe~~~~~--------~~~~~~~CP~Cg~~   35 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI--------SDDPLATCPECGGD   35 (41)
T ss_pred             EEEEcCCCCCEEEEEEec--------CCCCCCCCCCCCCc
Confidence            368999999976643211        22567889999874

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=86.33  E-value=0.58  Score=41.91  Aligned_cols=47  Identities=21%  Similarity=0.467  Sum_probs=24.1

Q ss_pred             cccCCCCCCCCCHHHHH-hhhhhhccCCCcceecCcccccc--hhhHHHHhh
Q 030491           46 DFPCPYCYEDFDIASLC-SHLEDEHSCESKVTVCPICSVKV--ARDMLSHIT   94 (176)
Q Consensus        46 ~F~CPFC~e~fDv~~L~-~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~   94 (176)
                      -+.|++||+-|+..=|. -|+...  ..-|+-.||.|..-.  -.|+-.||.
T Consensus       187 ~c~C~iCGKaFSRPWLLQGHiRTH--TGEKPF~C~hC~kAFADRSNLRAHmQ  236 (279)
T KOG2462|consen  187 PCECGICGKAFSRPWLLQGHIRTH--TGEKPFSCPHCGKAFADRSNLRAHMQ  236 (279)
T ss_pred             CcccccccccccchHHhhcccccc--cCCCCccCCcccchhcchHHHHHHHH
Confidence            35566666666654333 344432  334555666665443  346666654

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=84.82  E-value=0.37  Score=36.94  Aligned_cols=33  Identities=18%  Similarity=0.520  Sum_probs=20.9

Q ss_pred             CCcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        44 r~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      ...|.||||++ -+.+       .-.+  ..--++||+|-..-
T Consensus        19 pt~f~CP~Cge~~v~v-------~~~k--~~~h~~C~~CG~y~   52 (99)
T PRK14892         19 PKIFECPRCGKVSISV-------KIKK--NIAIITCGNCGLYT   52 (99)
T ss_pred             CcEeECCCCCCeEeee-------ecCC--CcceEECCCCCCcc
Confidence            45899999996 2221       1111  24458999997754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=83.82  E-value=0.66  Score=32.28  Aligned_cols=26  Identities=35%  Similarity=0.884  Sum_probs=21.1

Q ss_pred             CcccCCCCCCCC-CHHHHHhhhhhhcc
Q 030491           45 PDFPCPYCYEDF-DIASLCSHLEDEHS   70 (176)
Q Consensus        45 ~~F~CPFC~e~f-Dv~~L~~H~~eeH~   70 (176)
                      ..|.|++|++.| +..+|..|+...+-
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~~H   75 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSKHH   75 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHTTT
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCccC
Confidence            369999999955 89999999998643

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.18  E-value=0.3  Score=41.14  Aligned_cols=17  Identities=24%  Similarity=0.729  Sum_probs=13.5

Q ss_pred             cccCCCCCCCCCHHHHH
Q 030491           46 DFPCPYCYEDFDIASLC   62 (176)
Q Consensus        46 ~F~CPFC~e~fDv~~L~   62 (176)
                      +++||+|+..|....+.
T Consensus         5 ~~~CPvC~~~F~~~~vr   21 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVR   21 (214)
T ss_pred             ceECCCCCCeeeeeEEE
Confidence            68999999988876443

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=81.76  E-value=1.3  Score=26.06  Aligned_cols=20  Identities=30%  Similarity=0.796  Sum_probs=11.9

Q ss_pred             ccCCCCCCCCCHHHHHhhhh
Q 030491           47 FPCPYCYEDFDIASLCSHLE   66 (176)
Q Consensus        47 F~CPFC~e~fDv~~L~~H~~   66 (176)
                      ..||.|++.+....+-.|++
T Consensus         2 v~CPiC~~~v~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREVPENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcccHHHHHHHHH
Confidence            35666666656666666655

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>KOG1842 consensus FYVE finger-containing protein [General function prediction only]

Probab=80.26  E-value=1  Score=42.97  Aligned_cols=33  Identities=33%  Similarity=0.712  Sum_probs=28.4

Q ss_pred             CCCCcccCCCCCCCC-CHHHHHhhhhhhccCCCc
Q 030491           42 DVRPDFPCPYCYEDF-DIASLCSHLEDEHSCESK   74 (176)
Q Consensus        42 d~r~~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k   74 (176)
                      +.+.-|.||+|.++| +...|-+|++.+|..|-.
T Consensus        11 ~i~egflCPiC~~dl~~~~~L~~H~d~eH~~ed~   44 (505)
T KOG1842|consen   11 EILEGFLCPICLLDLPNLSALNDHLDVEHFEEDE   44 (505)
T ss_pred             hhhhcccCchHhhhhhhHHHHHHHHhhhccccch
Confidence            567789999999966 478899999999999774

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=80.03  E-value=0.74  Score=30.02  Aligned_cols=31  Identities=19%  Similarity=0.712  Sum_probs=21.5

Q ss_pred             CcccCCCCCCCCCHHHHHhhhhhhccCCCcceecCcccc
Q 030491           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSV   83 (176)
Q Consensus        45 ~~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa   83 (176)
                      .+|.|+-||..|++.   ....     +...+.||.|..
T Consensus         4 Yey~C~~Cg~~fe~~---~~~~-----~~~~~~CP~Cg~   34 (52)
T TIGR02605         4 YEYRCTACGHRFEVL---QKMS-----DDPLATCPECGG   34 (52)
T ss_pred             EEEEeCCCCCEeEEE---EecC-----CCCCCCCCCCCC
Confidence            379999999988743   1111     245678999987

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.84
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.8
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.42
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.29
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	97.24
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	97.2
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.15
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	97.08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	97.01
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.96
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	96.93
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.91
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.89
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	96.81
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.8
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	96.79
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	96.75
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	96.74
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.73
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	96.7
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	96.64
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.6
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	96.59
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	96.55
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	96.45
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	96.44
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	96.42
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.4
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	96.32
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.31
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	96.24
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.23
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	96.2
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	96.07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	96.02
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	95.77
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	95.71
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.68
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	95.62
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.61
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	95.58
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.54
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	95.52
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.5
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	95.47
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	95.46
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	95.43
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.42
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	95.38
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	95.38
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.37
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.35
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	95.35
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	95.33
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.26
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	95.21
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.17
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	95.15
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.14
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	95.1
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.09
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.08
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.02
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.01
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.01
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.99
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.99
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	94.93
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.91
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.91
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	94.9
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	94.88
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.87
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.86
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	94.84
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.82
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.81
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.81
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	94.78
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	94.78
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.76
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	94.76
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	94.74
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.67
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.67
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	94.62
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.61
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	94.59
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	94.53
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	94.49
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	94.47
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.45
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.37
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	94.35
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.35
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.33
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.32
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.32
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.3
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.29
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.2
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	94.04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	94.04
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	93.94
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	93.88
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.7
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	93.65
2epa_A	72	Krueppel-like factor 10; transforming growth facto	93.4
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	93.25
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	93.25
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	92.43
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.15
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	92.06
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	91.99
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.89
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	91.71
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.52
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	90.96
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.91
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.59
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.49
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.49
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.36
1paa_A	30	Yeast transcription factor ADR1; transcription reg	90.3
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.21
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.06
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	90.0
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	89.97
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	89.77
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.72
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	89.67
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.62
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.55
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	89.52
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.5
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.32
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	89.31
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	89.3
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.09
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	88.96
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	88.9
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	88.73
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.69
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	88.58
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.32
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	88.22
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	88.15
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	87.93
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	87.79
1wii_A	85	Hypothetical UPF0222 protein MGC4549; domain of un	87.75
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.63
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.61
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	87.51
1ard_A	29	Yeast transcription factor ADR1; transcription reg	87.48
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	87.4
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.18
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	87.15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	87.13
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	87.13
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.05
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	86.9
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	86.4
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.31
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	86.27
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	85.95
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	85.94
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	85.71
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	85.63
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	85.63
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.61
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	85.24
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	84.68
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	84.41
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	84.28
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	84.26
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	84.18
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.98
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.97
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	83.94
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	83.22
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	83.04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	83.01
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	82.76
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	82.7
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.58
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	82.57
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	82.52
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.5
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	82.43
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	82.16
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	81.99
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.75
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.39
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	81.3
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.92
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.89
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	80.74
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	80.7
2ect_A	78	Ring finger protein 126; metal binding protein, st	80.7
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	80.45
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	80.21

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.84  E-value=2.4e-05  Score=49.91  Aligned_cols=54  Identities=26%  Similarity=0.602  Sum_probs=45.8

Q ss_pred             CcccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           45 PDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        45 ~~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      ..|.|+.|++. -....|..|....|..+.+.-.|++|....  ..+|..|+...|+
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            36999999994 468889999999887677889999998764  5689999998886

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.80  E-value=3.1e-05  Score=51.09  Aligned_cols=54  Identities=20%  Similarity=0.404  Sum_probs=46.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++ -.....|..|+...|..+.+...|++|....  ..+|..|+...|+.
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            599999999 5578899999998898777889999998764  57899999988865

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.42  E-value=0.00028  Score=43.38  Aligned_cols=51  Identities=24%  Similarity=0.386  Sum_probs=40.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++|++ --....|..|+.. |.. .+...|++|....  ..+|..|+...|+
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRT-HTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHH-HHC-CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHH-cCC-CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            699999999 5578889999886 433 4568999998764  6789999988875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.29  E-value=0.00037  Score=46.83  Aligned_cols=52  Identities=19%  Similarity=0.393  Sum_probs=25.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH   97 (176)
                      .|.|+.|++ --....|..|+...|....+...|++|....  ..+|..|+...|
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH   89 (95)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTS
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhc
Confidence            355555555 3344555555554333323455555555432  345555554444

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.24  E-value=0.0004  Score=44.82  Aligned_cols=53  Identities=23%  Similarity=0.333  Sum_probs=42.5

Q ss_pred             CcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        45 ~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      ..|.|++|++ --....|..|+.. |.. .+...|++|....  ..+|..|+...|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERI-HCT-DRPFKCNYCSFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG-GCC-SCSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-cCC-CCCEeCCCCCCccCCHHHHHHHHHHHhCC
Confidence            3699999999 5567889999977 544 4568999998865  57899999888864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.20  E-value=0.00049  Score=45.25  Aligned_cols=54  Identities=20%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCC--CcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE--SKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e--~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++ --....|..|+...|...  .+...|++|....  ..+|..|+...|+.
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCC
Confidence            699999999 556788999998888654  3678999998764  57899999887764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.15  E-value=0.00065  Score=43.67  Aligned_cols=48  Identities=29%  Similarity=0.676  Sum_probs=39.8

Q ss_pred             CcccCCCCCCCCCHHHHHhhhhhhccCCCcceecC-ccccc--chhhHHHHhhh
Q 030491           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCP-ICSVK--VARDMLSHITL   95 (176)
Q Consensus        45 ~~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCP-ICaa~--~s~d~l~HL~~   95 (176)
                      ..|.|++|++.|....|..|...   ...+...|+ +|...  ...+|..|+..
T Consensus         9 ~~~~C~~C~k~f~~~~L~~H~~~---~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            9 RTQPCTYCTKEFVFDTIQSHQYQ---CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CEEECSSSCCEEEHHHHHHHHHH---CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCeeccccCCccCHHHHHHHHHH---cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            46999999997778999999876   567889999 99775  35689999864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=97.08  E-value=0.001  Score=40.78  Aligned_cols=50  Identities=16%  Similarity=0.355  Sum_probs=39.2

Q ss_pred             ccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        47 F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      |.|+.|++ --....|..|... |.. .+...|++|....  ..+|..|+...|+
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT-HTD-VRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSS-CCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh-cCC-CCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            88999999 4567889999876 433 4678999998764  5689999876654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.01  E-value=0.00082  Score=43.64  Aligned_cols=51  Identities=18%  Similarity=0.318  Sum_probs=40.3

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++|++ --....|..|+.. |.. .+...|++|....  ..+|..|+...++
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRV-HTG-EKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHG-GGC-SCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCccCCHHHHHHHHHh-cCC-CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            699999999 5577889999876 433 4678999998864  5689999877654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.96  E-value=0.0015  Score=40.58  Aligned_cols=51  Identities=22%  Similarity=0.413  Sum_probs=39.9

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|+.|++. -....|..|... |.. .+...|++|....  ..+|..|+...|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS-HTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT-TTS-SCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cCcCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            4899999994 468889999876 543 4678999998864  5689999866664

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.93  E-value=0.00094  Score=47.11  Aligned_cols=50  Identities=24%  Similarity=0.505  Sum_probs=40.7

Q ss_pred             cccCCCCCCCC--CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYEDF--DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e~f--Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|+.|++.|  ....|..|+.. |  ..+...|++|....  ..+|..|+...|.
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~-h--~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMEN-C--KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHH-H--CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHH-H--CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            69999999988  88999999876 5  45788999998764  5689999555564

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.91  E-value=0.0003  Score=48.93  Aligned_cols=53  Identities=19%  Similarity=0.344  Sum_probs=42.6

Q ss_pred             cccCCCCCCCC--CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYEDF--DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e~f--Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++.|  ....|..|+...|. ..+...|++|....  ..+|..|+...|+.
T Consensus        24 ~~~C~~C~k~f~~~~~~L~~H~~~h~~-~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A           24 EAVCPTCNVVTRKTLVGLKKHMEVCQK-LQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CCCCTTTCCCCSSCSHHHHHHHHHHHH-HHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CcCCCCCCCChhhhHHHHHHHHHHHcC-CCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            69999999966  58899999976543 24578999998764  57899999888864

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.89  E-value=0.0026  Score=41.31  Aligned_cols=52  Identities=25%  Similarity=0.544  Sum_probs=40.5

Q ss_pred             CcccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        45 ~~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      ..|.|+.|++.| ....|..|... |.. .+.-.|++|....  ..+|..|+...++
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTV-HTG-EKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHH-HCC-CCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHH-cCC-CCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            479999999955 67889999876 433 4568999998864  5689999876554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.81  E-value=0.0021  Score=42.05  Aligned_cols=52  Identities=21%  Similarity=0.489  Sum_probs=40.5

Q ss_pred             CcccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        45 ~~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      ..|.|+.|++.| ....|..|+.. |.. .+...|++|....  ..+|..|+...++
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRT-HTG-EKPYKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT-TCC-SCSEECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH-cCC-CcCeeCCCCCCccCCHHHHHHHHHHhCC
Confidence            469999999954 68889999875 443 4678999998864  5689999976554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.80  E-value=0.0011  Score=43.46  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=42.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccC-CCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSC-ESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~-e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++ --....|..|+...+.. ..+...|++|....  ..+|..|+...|..
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            699999999 55678899998765432 35678999998874  56899999888865

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=96.79  E-value=0.0016  Score=42.24  Aligned_cols=50  Identities=18%  Similarity=0.468  Sum_probs=29.5

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH   97 (176)
                      .|.|++|++ --....|..|....+.  .+...|++|....  ..+|..|+...+
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTFIHTG--EKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT--CCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CeeCCcCChhhCCHHHHHHHHHHhcC--CCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            467777777 3356666777654432  3456677776543  456666665543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.75  E-value=0.0016  Score=45.05  Aligned_cols=52  Identities=19%  Similarity=0.298  Sum_probs=27.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++ --....|..|+...+.  .+...|++|....  ..+|..|+...|+.
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKIHTG--IKPYECNICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTTTCC--CCCEECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHHcCC--CCCeeCCCCcchhcCHHHHHHHHHHcccc
Confidence            366666666 3344556666543221  2345666665543  34666666655543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=96.74  E-value=0.0022  Score=42.36  Aligned_cols=50  Identities=22%  Similarity=0.448  Sum_probs=28.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH   97 (176)
                      .|.|++|++ --....|..|+...+.  .+...|++|....  ..+|..|+...+
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           34 PFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHC--CCCEECTTTCCEESSHHHHHHHHGGGG
T ss_pred             CccCCCCCcccCCHHHHHHHHHHcCC--CCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            467777776 4455666667654322  2445677776543  446666665544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.73  E-value=0.0026  Score=44.14  Aligned_cols=53  Identities=23%  Similarity=0.483  Sum_probs=38.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhcc-CCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHS-CESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~-~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++|++ -.....|..|....|. ...+...|++|....  ..+|..|+...++
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCC
Confidence            588888888 5577788888877543 345567888887764  4578888876554

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.70  E-value=0.0021  Score=43.16  Aligned_cols=47  Identities=19%  Similarity=0.417  Sum_probs=19.2

Q ss_pred             ccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhh
Q 030491           47 FPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (176)
Q Consensus        47 F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~   95 (176)
                      |.|++|++.| +...|..|+...+.  .+...|++|....  ..+|..|+..
T Consensus         9 ~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~   58 (96)
T 2dmd_A            9 HKCEVCGKCFSRKDKLKTHMRCHTG--VKPYKCKTCDYAAADSSSLNKHLRI   58 (96)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC--CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             eECCCCCCccCCHHHHHHHHHhcCC--CCCEeCCCCCCccCCHHHHHHHHHH
Confidence            4455554422 33444444443211  2334445544332  2344444443

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=96.64  E-value=0.0027  Score=46.31  Aligned_cols=56  Identities=20%  Similarity=0.312  Sum_probs=43.0

Q ss_pred             CCCcccCCCCCC-CCCHHHHHhhhhhhccCCCcc-------eecCcccccc--hhhHHHHhhhhcc
Q 030491           43 VRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKV-------TVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        43 ~r~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~-------vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      ....|.|+.|++ --+...|..|+...|..+...       ..|++|....  ..+|..|+...++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   87 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCC
Confidence            345899999999 446888999999988875432       4799997764  5688899886554

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.60  E-value=0.0026  Score=44.18  Aligned_cols=53  Identities=25%  Similarity=0.382  Sum_probs=42.4

Q ss_pred             CcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        45 ~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      ..|.|++|++ --....|..|+...+  ..+...|++|....  ..+|..|+...|+-
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVSHT--GEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHS--SSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcC--CCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            4699999999 566788999997643  24678999998864  56899999887854

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=96.59  E-value=0.0024  Score=45.48  Aligned_cols=50  Identities=28%  Similarity=0.603  Sum_probs=40.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++ --....|..|... |   .++-.|++|....  ..+|..|+...||-
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~~-H---~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIRY-T---EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-T---CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHH-C---CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            699999999 4567789999876 5   4567999998764  67899999988874

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=96.55  E-value=0.0029  Score=40.93  Aligned_cols=50  Identities=24%  Similarity=0.481  Sum_probs=39.9

Q ss_pred             ccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        47 F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      |.|+.|++ --+...|..|+...+  +.+...|++|....  ..+|..|+...++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHS--DTRPYPCQYCGKRFHQKSDMKKHTFIHTG   54 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHH--TCCCEECSSSCCEESSHHHHHHHHHHHHT
T ss_pred             ccCCCCcccccCchhHHHHHHHcC--CCCCeeCCcCChhhCCHHHHHHHHHHhcC
Confidence            89999999 557888999998754  34678999998764  5689999986654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.45  E-value=0.0058  Score=40.93  Aligned_cols=54  Identities=22%  Similarity=0.402  Sum_probs=41.3

Q ss_pred             CcccCCCCCCCC-CHHHHHhhhhhhccCCCcc-------eecCcccccc--hhhHHHHhhhhcc
Q 030491           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKV-------TVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        45 ~~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~-------vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      ..|+|+.|++.| ....|..|+...|..+...       ..|++|....  ..+|..|+...++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            468899999944 6788999998878765321       6899998764  5689999886544

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.44  E-value=0.0042  Score=43.75  Aligned_cols=53  Identities=26%  Similarity=0.451  Sum_probs=42.2

Q ss_pred             CcccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        45 ~~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      ..|.||+|++.| ....|..|+...+  ..++-.|++|...-  ..+|..|+...|..
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~--~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLH--AAQVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTS--CSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhcc--CCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            469999999954 6788999987654  34678999998864  67999999877753

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.42  E-value=0.0044  Score=41.50  Aligned_cols=53  Identities=25%  Similarity=0.470  Sum_probs=41.7

Q ss_pred             CcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        45 ~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      ..|.|++|++ -.....|..|+... . ..+...|++|....  ..+|..|+...|+-
T Consensus        35 ~~~~C~~C~~~f~~~~~l~~H~~~h-~-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           35 KPYKCKTCDYAAADSSSLNKHLRIH-S-DERPFKCQICPYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS-C-CCCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCEeCCCCCCccCCHHHHHHHHHHh-C-CCCCccCCCCCCccCCHHHHHHHHHHhcCC
Confidence            3699999999 55788999999864 3 34668999998764  56899999877654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.40  E-value=0.0045  Score=42.30  Aligned_cols=52  Identities=19%  Similarity=0.442  Sum_probs=38.6

Q ss_pred             CcccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        45 ~~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      ..|.|++|++.| +...|..|+...+.  .+...|++|....  ..+|..|+...++
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~   70 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTD--ERPYTCDICHKAFRRQDHLRDHRYIHSK   70 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCC--SCCCBCSSSCCBCSCHHHHHHHGGGSCC
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCC--CCCcCCCCccchhCCHHHHHHHHHHhCC
Confidence            469999999944 67788899876433  3567899997764  5688888876654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=96.32  E-value=0.0037  Score=41.83  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=42.3

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccchhh
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGHLFK  102 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~~~k  102 (176)
                      .|.|+.|++ --....|..|... |.. .+...|++|....  ..+|..|+...|+..|.
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   60 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHRDIQHILPIL   60 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHHHHTHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCCCCccCCHHHHHHHHHHhCCCcch
Confidence            589999999 4467889999876 543 4568999998764  57899999988875443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.31  E-value=0.0013  Score=44.59  Aligned_cols=51  Identities=20%  Similarity=0.362  Sum_probs=41.4

Q ss_pred             CcccCCCCCCCCCHHHHHhhhhhhccCCCcceecCcccccc-hhhHHHHhhhhcc
Q 030491           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV-ARDMLSHITLQHG   98 (176)
Q Consensus        45 ~~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~-s~d~l~HL~~rH~   98 (176)
                      ..+.|+||++.|....|-.|.  .|. ..+.+.||.|...+ ..+|..|+..-.+
T Consensus        16 r~~~C~~C~~~~~~~~L~~H~--~~c-~~~~~~C~~C~~~~~~~~l~~H~~~c~~   67 (75)
T 2d9k_A           16 RLAVCQHCDLELSILKLKEHE--DYC-GARTELCGNCGRNVLVKDLKTHPEVCGR   67 (75)
T ss_dssp             CCEECSSSCCEECHHHHHHHH--HHH-HHCEEECSSSCCEEETTGGGTHHHHBTT
T ss_pred             cccCCcccChHhhHHHHHHHH--hHc-CCCceEcccCCCcCcHHHHHHHHHHccC
Confidence            469999999999999999998  564 46779999998765 5788999875433

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=96.24  E-value=0.0054  Score=40.51  Aligned_cols=49  Identities=22%  Similarity=0.554  Sum_probs=39.3

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhh
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQ   96 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~r   96 (176)
                      -|.|+.|++.| ....|..|... |.. .++-.|++|...-  ..+|..|+...
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~-Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~H   55 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRA-HLG-YRPRSCPECGKCFRDQSEVNRHLKVH   55 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HHT-CCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred             CccCCCCCCEeCCHHHHHHHHHH-hCC-CcCeECCCCCCCcCCHHHHHHHhCcc
Confidence            49999999955 67789999865 654 5788999998864  67999998753

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.23  E-value=0.015  Score=39.64  Aligned_cols=53  Identities=21%  Similarity=0.289  Sum_probs=40.7

Q ss_pred             CcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        45 ~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      ..|.|++|++ -.....|..|....+  ..+...|++|....  ..+|..|+...++.
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRYIHS--KEKPFKCQECGKGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGGGSC--CCCTTSCSSSCCCCSSHHHHHHHHHHTTSC
T ss_pred             CCcCCCCccchhCCHHHHHHHHHHhC--CCCCeECCCcCCcccCHHHHHHHHHHhCCC
Confidence            3699999999 457889999977543  24568999998764  56899999776653

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.20  E-value=0.0048  Score=41.24  Aligned_cols=53  Identities=28%  Similarity=0.565  Sum_probs=41.8

Q ss_pred             CcccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        45 ~~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      ..|.|++|++.| +...|..|+.. |.. .+...|++|....  ..+|..|+...|+.
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHH-SCS-SCSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             CCeECCCCCCccCChHHHHHHHHh-cCC-CCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            369999999944 67889999986 433 4568999998764  57899999887763

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.07  E-value=0.0065  Score=41.94  Aligned_cols=45  Identities=22%  Similarity=0.443  Sum_probs=32.8

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhh
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHIT   94 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~   94 (176)
                      .|.|++|++. -....|..|... |   .+...|++|....  ..+|..|++
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~-H---~~~~~C~~C~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERL-C---RNAAVCPYCSLRFFSPELKQEHES   63 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-H---HHSBCCTTTCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-C---CCCccCCCCCCccCCHHHHHHHHH
Confidence            5888888884 466778888876 4   2567888887764  567888874

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=96.02  E-value=0.0011  Score=44.47  Aligned_cols=51  Identities=10%  Similarity=0.039  Sum_probs=43.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++ --....|..|....|.   ...+|++|....  ..+|..||...|+.
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~c~~C~~~f~~~~~L~~H~~~~h~~   84 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQHI---LPILEDKVEELLSKNYHLENEVARLKKL   84 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhCC---CcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            599999999 5577899999999884   678999998764  56899999988865

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.77  E-value=0.008  Score=35.36  Aligned_cols=35  Identities=23%  Similarity=0.205  Sum_probs=27.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|....|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~-k~~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTGE-KPSGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTTS-CSSSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCCC-CCCCCCCC
Confidence            599999999 455788999988567543 56889998

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.71  E-value=0.016  Score=37.42  Aligned_cols=52  Identities=23%  Similarity=0.486  Sum_probs=41.2

Q ss_pred             cccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCc--ccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPI--Caa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++  |++ --....|..|+...|.. .+...|++  |....  ..+|..|+...++
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~   65 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIH-QKSFSCPEPACGKSFNFKKHLKEHMKLHSD   65 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGS-CCCEECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCC-CCCeECCCCCCcCccCCHHHHHHHHHHhCC
Confidence            588888  999 45788999999877765 46789999  98764  5789999986554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.68  E-value=0.012  Score=34.64  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRGI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGGG-TSC-CCCCSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhhh-cCC-CCCCCCCCC
Confidence            699999999 4466788899754 544 367899998

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=95.62  E-value=0.018  Score=40.21  Aligned_cols=49  Identities=24%  Similarity=0.516  Sum_probs=26.7

Q ss_pred             cccCC--CCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhc
Q 030491           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        46 ~F~CP--FC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH   97 (176)
                      .|.||  .|++ --+...|..|+. .|  ..+...|++|....  ..+|..|+...+
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~-~h--~~~~~~C~~C~~~f~~~~~l~~H~~~h~   58 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLH-TH--GPRVHVCAECGKAFVESSKLKRHQLVHT   58 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHG-GG--SCCCEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cccCCCCCCcCccCCHHHHHHHHH-Hc--CCCCeECCCCCchhCCHHHHHHHHHHcC
Confidence            46666  5666 334556666654 34  34455666665543  345666655443

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.61  E-value=0.0089  Score=35.22  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2eq0_A           12 PYKCHECGKVFRRNSHLARHQLI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHTT-TCCC-CCSCCSCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            699999999 5567788999765 6544 67889998

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=95.58  E-value=0.012  Score=34.56  Aligned_cols=34  Identities=21%  Similarity=0.121  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNV-HVG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGG-GSS-SSCSCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCcCCCCC
Confidence            599999999 4566789999866 643 467889998

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=95.54  E-value=0.01  Score=35.00  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTG-GGC-CCCCSSSCC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            599999999 4567888999765 544 367899998

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=95.52  E-value=0.02  Score=38.37  Aligned_cols=55  Identities=22%  Similarity=0.382  Sum_probs=40.1

Q ss_pred             CCCcccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecC--cccccc--hhhHHHHhhhhccc
Q 030491           43 VRPDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        43 ~r~~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCP--ICaa~~--s~d~l~HL~~rH~~   99 (176)
                      ....|.|++  |++ --....|..|+...+  ..+...||  +|....  ..+|..|+...++.
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   73 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT--GEKPYKCTWEGCDWRFARSDELTRHYRKHTGA   73 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHS--CCCCEECCSSSCCCEESSHHHHHHHHHHHTSC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhC--CCCCeeCCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            345799998  999 557888999998643  24567897  597764  56888998766553

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.50  E-value=0.013  Score=34.41  Aligned_cols=34  Identities=15%  Similarity=0.015  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRI-HTG-ENPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT-TTT-SCCSCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            699999999 4566889999765 543 457889998

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=95.47  E-value=0.019  Score=37.71  Aligned_cols=51  Identities=25%  Similarity=0.505  Sum_probs=39.6

Q ss_pred             cccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.||+  |++ --....|..|+...+.  .+...|++|....  ..+|..|+...++
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~   59 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTG   59 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCC--CCCccCCCCCcccCCHHHHHHHHHHcCC
Confidence            699995  999 4567889999886543  4568999998764  5689999986654

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=95.46  E-value=0.013  Score=43.70  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhh
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~   95 (176)
                      .|.|+.|++ =-....|..|+. .|.. .++-.|++|...-  ..+|..|+..
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFN-IHSW-EKKYPCRYCEKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHH-HHHC-CSCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CeECCCCCCCcCCHHHHHHHHH-HcCC-CCCeeCCccCeecccccchhhhccc
Confidence            577777777 345667777765 3543 3456777776543  4566667654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=95.43  E-value=0.017  Score=36.96  Aligned_cols=49  Identities=24%  Similarity=0.476  Sum_probs=37.1

Q ss_pred             CcccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhh
Q 030491           45 PDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (176)
Q Consensus        45 ~~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~   95 (176)
                      ..|.||+  |++ --....|..|... |.. .+...|++|....  ..+|..|+..
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHh-hCC-CCCeECCCCCchhCCHHHHHHHHHh
Confidence            3699996  999 5567889999865 443 4568999998864  5688888753

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.42  E-value=0.015  Score=34.14  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=26.6

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++. -....|..|.. .|.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQK-CHTG-ERHSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHH-HHSC-CSSCCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            5999999994 45788999975 4654 367889998

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.38  E-value=0.018  Score=41.75  Aligned_cols=52  Identities=23%  Similarity=0.438  Sum_probs=40.3

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccC--CCcceecCcccccc--hhhHHHHhhhhc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSC--ESKVTVCPICSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~--e~k~vVCPICaa~~--s~d~l~HL~~rH   97 (176)
                      .|.|++|++. -....|..|....|..  +.++-.|++|....  ..+|..|+...|
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~H   74 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH   74 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTS
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhc
Confidence            6999999994 4678899999877853  45678999998764  568999943334

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=95.38  E-value=0.016  Score=43.62  Aligned_cols=51  Identities=24%  Similarity=0.496  Sum_probs=37.5

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++|++ --....|..|+...+.  .+...|++|....  ..+|..|+...++
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCC--CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            588999988 4467778888876543  3567899997764  5688888877654

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.37  E-value=0.012  Score=34.71  Aligned_cols=34  Identities=21%  Similarity=0.168  Sum_probs=27.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRT-HAG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HTT-SCCSCSSCC
T ss_pred             CcCCCCCCcccCcHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5567889999766 544 467889998

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.35  E-value=0.016  Score=34.07  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++.| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSMV-HTA-EKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-TTC-CCSSSCCCC
T ss_pred             CcCCCcCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            69999999954 67888999765 644 367889998

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.35  E-value=0.013  Score=40.43  Aligned_cols=50  Identities=22%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++|++ --....|..|..  |.. .+...|++|....  ..+|..|+...|.
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~--H~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~   94 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES--KCE-YKKLTCLECMRTFKSSFSIWRHQVEVHN   94 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH--HCS-TGGGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             CccCCCCCCccCCHHHHHHHHH--cCC-CCCccCccccchhCCHHHHHHHHHHHcC
Confidence            599999999 446788999983  654 4678999998764  5699999986664

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.33  E-value=0.0088  Score=43.27  Aligned_cols=51  Identities=27%  Similarity=0.517  Sum_probs=39.1

Q ss_pred             cccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCc--ccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPI--Caa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++  |++ -.+...|..|+.. |. +.+...|++  |....  ..+|..|+...|.
T Consensus        67 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~-~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           67 PHKCTFEGCRKSYSRLENLKTHLRS-HT-GEKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH-TT-TCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccCCCCCCCCcccCHHHHHHHHHH-cC-CCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            599997  999 5567889999986 43 346789998  98764  5689999966664

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.26  E-value=0.013  Score=34.48  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ene_A           12 PYKCNECGKVFRHNSYLSRHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TCC-CCCCSCCCC
T ss_pred             CeECCCCCchhCChHHHHHHHhh-cCC-CCCCCCCCC
Confidence            599999999 4566889999775 544 467889998

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=95.21  E-value=0.024  Score=36.60  Aligned_cols=50  Identities=22%  Similarity=0.453  Sum_probs=27.5

Q ss_pred             ccC--CCCCCCC-CHHHHHhhhhhhccCCCcceecCc--ccccc--hhhHHHHhhhhcc
Q 030491           47 FPC--PYCYEDF-DIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        47 F~C--PFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI--Caa~~--s~d~l~HL~~rH~   98 (176)
                      |.|  +.|++.| ....|..|... |.. .+...|++  |....  ..+|..|+...++
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHH-hCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            566  5566633 45666666643 322 24456666  65543  4466666665555

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.17  E-value=0.016  Score=34.08  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=26.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ep2_A           12 PYECSICGKSFTKKSQLHVHQQI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHT-TSS-CCSCCSCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            699999999 5567889999864 544 367889998

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.15  E-value=0.016  Score=35.72  Aligned_cols=38  Identities=16%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCccccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~   84 (176)
                      .|.|++|++ --....|..|+...|.. .+.-.|++|...
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~C~k~   50 (54)
T 2eps_A           12 PYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSG   50 (54)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSSSCCS
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC-CCCccCCCCCCC
Confidence            699999999 44778899999877765 456899999764

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.14  E-value=0.019  Score=33.83  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=26.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRT-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTT-TCC-SCSSCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5567889999775 543 467889998

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=95.10  E-value=0.016  Score=33.98  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRS-HTG-VKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGG-SSS-CCCSCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5566889999765 543 467899998

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.09  E-value=0.017  Score=34.00  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=26.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|+||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~c   46 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSS-SSCSSCCCC
T ss_pred             CEeCCcCCCccCCHHHHHHHHHH-HCC-CCCCCCCCC
Confidence            699999999 4567889999875 543 467899998

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.08  E-value=0.017  Score=33.89  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=27.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQRS-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-SCC-SSCCSSCCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5567889999765 644 467889998

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.02  E-value=0.016  Score=34.34  Aligned_cols=34  Identities=18%  Similarity=0.117  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQRL-HTG-QRPSGPSSG   46 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHHH-HHS-CCCCCCCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4556788999876 544 367899998

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.01  E-value=0.019  Score=33.73  Aligned_cols=34  Identities=18%  Similarity=0.115  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ =-....|..|... |.. .++-.|+||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQKI-HTK-QKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-TSC-CCCSSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5567889999865 543 467889998

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.01  E-value=0.021  Score=33.39  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|.. .|.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2eme_A           12 PYVCDYCGKAFGLSAELVRHQR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG-GGCC-CSCCSSCCC
T ss_pred             CeECCCCChhhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            599999999 556788999986 4543 456889998

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.99  E-value=0.016  Score=34.13  Aligned_cols=34  Identities=18%  Similarity=0.062  Sum_probs=26.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSC-SCCSSCCCC
T ss_pred             CeECCcCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            699999999 5567889999765 643 456889998

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=94.99  E-value=0.025  Score=33.30  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHHH-HSS-CCCSSCCCC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5566788999865 543 467899998

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.93  E-value=0.037  Score=39.93  Aligned_cols=53  Identities=23%  Similarity=0.263  Sum_probs=29.1

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccC-CCcceecCccc-----cc--chhhHHHHhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSC-ESKVTVCPICS-----VK--VARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~-e~k~vVCPICa-----a~--~s~d~l~HL~~rH~   98 (176)
                      .|.|+.|++ =-+...|..|+...|.. +.+..+|++|.     ..  -..+|..|+...++
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~   64 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG   64 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHC
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCC
Confidence            466777777 33566677777665432 33455666533     11  13466666665443

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=94.91  E-value=0.022  Score=33.32  Aligned_cols=34  Identities=21%  Similarity=0.119  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++..|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRV-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGG-GTS-CCCCSTTCC
T ss_pred             CeECCccccccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            699999999 4567889999765 543 467889998

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.91  E-value=0.018  Score=33.70  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ --....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQRI-HTGV-KPSGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHGG-GSCC-CSCSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999999 5567888999764 5543 67899998

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=94.90  E-value=0.028  Score=42.25  Aligned_cols=52  Identities=23%  Similarity=0.443  Sum_probs=41.3

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.||+|++ --+...|..|....+.  .+...|++|....  ..+|..|+...++.
T Consensus        77 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  131 (190)
T 2i13_A           77 PYKCPECGKSFSQRANLRAHQRTHTG--EKPYACPECGKSFSQLAHLRAHQRTHTGE  131 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHT--CCCEECTTTCCEESSHHHHHHHHHHHHCC
T ss_pred             CccCcccCCccCCHHHHHHHHHhcCC--CCCCcCCCCCCccCCHHHHHHHHHHhCCC
Confidence            699999999 5578899999987654  4568999998764  56899999876653

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.90  E-value=0.022  Score=33.59  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |. +.++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~-~~k~~~C~~c   46 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQKI-HT-GEKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGGG-TS-CSSCSCCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-hC-CCCCCCCCCC
Confidence            599999999 4567889999875 54 3467899998

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=94.88  E-value=0.034  Score=38.23  Aligned_cols=51  Identities=20%  Similarity=0.338  Sum_probs=28.5

Q ss_pred             cccCC--CCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CP--FC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|+  .|++ --....|..|+...+  ..+...|++|....  ..+|..|+...++
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRRHT--GVKPFQCKTCQRKFSRSDHLKTHTRTHTG   91 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH--CCCCEECTTTCCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHcC--CCCCccCCccCchhCCHHHHHHHHHHhcC
Confidence            46666  3666 334566666666532  23445666665543  4466666655443

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.87  E-value=0.027  Score=32.95  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTT-TTT-CSCCCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            599999999 4466788999765 544 457889998

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.86  E-value=0.023  Score=33.36  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRRI-HTG-YRPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HTC-CCSSCSSCC
T ss_pred             CeECCCCCCeeCChHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5566789999765 543 467899998

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.84  E-value=0.016  Score=34.02  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=26.5

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRT-HVD-DKHSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHH-CCS-CCCSCCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            5999999994 456889999865 544 467889998

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.82  E-value=0.013  Score=34.42  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=27.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2en6_A           12 PYGCNECGKTFSQKSILSAHQRT-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEEETTTTEEESSHHHHHHHHHH-HSS-CCCSSSCCC
T ss_pred             CeECCCCCcccCchHHHHHHHHH-cCC-CCCCCCCCC
Confidence            699999999 5567889999876 544 367889998

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.81  E-value=0.017  Score=34.05  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLKR-HFR-EKSSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHS-TTSSCCSCC
T ss_pred             CEEccccCcccCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            599999999 5567789999776 543 456889998

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.81  E-value=0.021  Score=33.53  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-HHC-SSCSSSCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            699999999 5566789999864 544 367889998

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.78  E-value=0.026  Score=33.04  Aligned_cols=34  Identities=21%  Similarity=0.108  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERL-HSG-EKPSGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHH-CCS-SSCCCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHh-cCC-CCCCCCCCC
Confidence            599999999 4566789999765 543 467889998

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.78  E-value=0.028  Score=32.95  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=26.4

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHTT-TTT-CCCCSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            5999999994 456788999864 543 467889998

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.76  E-value=0.026  Score=33.13  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ =-....|..|... |. +.++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~-~~k~~~C~~C   46 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHMV-HT-GEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGGG-GT-TCCCSSTTCC
T ss_pred             CccCCCccchhCCHHHHHHHHHH-hC-CCCCCCCCCC
Confidence            699999999 5567889999765 54 3467889998

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=94.76  E-value=0.042  Score=35.41  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=38.0

Q ss_pred             cccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCc---ccccc--hhhHHHHhhhhc
Q 030491           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI---CSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        46 ~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPI---Caa~~--s~d~l~HL~~rH   97 (176)
                      .|.||+  |++ --....|..|+...+.     ..|++   |...-  ..+|..|+...|
T Consensus        31 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           31 PYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            599999  999 5578899999977554     78999   97764  568999987655

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=94.74  E-value=0.037  Score=41.61  Aligned_cols=53  Identities=21%  Similarity=0.294  Sum_probs=33.6

Q ss_pred             cccCC--CCCC-CCCHHHHHhhhhhhccCCCcceec--Ccccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVC--PICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CP--FC~e-~fDv~~L~~H~~eeH~~e~k~vVC--PICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|+  .|++ -.+...|..|+...|....+..+|  ++|....  ..+|..|+...++
T Consensus        72 ~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~  131 (190)
T 1tf6_A           72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ  131 (190)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSS
T ss_pred             ceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCC
Confidence            46777  6777 556667777776666655566677  6676543  4566677665443

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.025  Score=33.09  Aligned_cols=34  Identities=21%  Similarity=0.158  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSC-CCTTSSSCC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5567889999765 543 467889998

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.031  Score=32.85  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=26.5

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++.| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQRV-HMG-EKTSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGGG-GGS-CCCCCSCCC
T ss_pred             CeeCcccCchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            59999999944 56889999774 543 456889998

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.028  Score=32.97  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQRI-HSG-KKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GSS-CCCSCSSCC
T ss_pred             CeeCCCcCCccCCHHHHHHHHHH-hcC-CCCCCCCCC
Confidence            599999999 5566788899765 543 456889998

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=94.62  E-value=0.052  Score=35.47  Aligned_cols=48  Identities=23%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             cccCCC--CCCC-CCHHHHHhhhhhhccCCCcceecC--cccccc--hhhHHHHhhh
Q 030491           46 DFPCPY--CYED-FDIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITL   95 (176)
Q Consensus        46 ~F~CPF--C~e~-fDv~~L~~H~~eeH~~e~k~vVCP--ICaa~~--s~d~l~HL~~   95 (176)
                      .|.|++  |++. -....|..|+...+  +.+...||  +|....  ..+|..|+..
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~~~C~~~f~~~~~l~~H~~~   59 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHT--GEKPYHCDWDGCGWKFARSDELTRHYRK   59 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSC--SSCCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcC--CCCCcCCCCCCCCCccCCHHHHHHHHHH
Confidence            455555  5552 23444555554321  12334554  354432  3344555443

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=94.61  E-value=0.023  Score=33.46  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=26.7

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++.| ....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHKL-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHHH-HSC-CSSCSCCCC
T ss_pred             CcccCccCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            59999999954 56788999875 543 467899998

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=94.59  E-value=0.046  Score=38.04  Aligned_cols=51  Identities=18%  Similarity=0.361  Sum_probs=39.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc--ccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI--Caa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++|++ --....|..|+... . ..+...|++  |....  ..+|..|+...++
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~h-~-~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   89 (124)
T 1ubd_C           34 VHVCAECGKAFVESSKLKRHQLVH-T-GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG   89 (124)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGT-S-CCCCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHc-C-CCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            699999999 55778899998754 3 245678987  98764  5688999887665

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.53  E-value=0.044  Score=37.59  Aligned_cols=50  Identities=18%  Similarity=0.428  Sum_probs=39.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.| .|++ --....|..|+...+.  .+...|++|....  ..+|..|+...++
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSMHLG--LRPYGCGVCGKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSC--CCSEECTTTSCEESSSHHHHHHHTTTCC
T ss_pred             CEec-cCCCccCCHHHHHHHHHHcCC--CcCccCCCCCcccCCHHHHHHHHHHcCC
Confidence            6999 9999 5578899999986543  4568999998864  5689999987664

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.49  E-value=0.026  Score=33.05  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS   82 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICa   82 (176)
                      .|.|+.|++ -.....|..|... |. ..+...||+|-
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~-H~-~~~~~~C~~cg   45 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRS-HD-GSVGKSGPSSG   45 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHH-HS-CCCCCCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH-cc-CCCCCCCcCCC
Confidence            699999999 4577889999876 44 35678999993

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.47  E-value=0.011  Score=40.95  Aligned_cols=52  Identities=15%  Similarity=0.233  Sum_probs=34.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhh-ccCCCcceecCccccc----chhhHHHHhhhhc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDE-HSCESKVTVCPICSVK----VARDMLSHITLQH   97 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~ee-H~~e~k~vVCPICaa~----~s~d~l~HL~~rH   97 (176)
                      .|.|+.|++ -.....|..|+... |..+.....|++|...    -..+|..|+...+
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC
Confidence            599999999 55678889998851 3223334458998753    2457777776544

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.45  E-value=0.02  Score=33.59  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=26.2

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGGG-GSS-CCSSCSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            699999999 4456788999754 543 467889998

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.37  E-value=0.025  Score=33.18  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=26.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQVI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHH-HHC-CSCCSCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5567889999875 543 467889998

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=94.35  E-value=0.036  Score=32.58  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQRM-HTR-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG-GCC-SSCCSCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5567889999765 544 456889998

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.35  E-value=0.024  Score=33.31  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=26.5

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2en1_A           12 PFKCEECGKRFTQNSQLHSHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGG-GSC-CCCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5566788999865 544 467889998

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.33  E-value=0.038  Score=32.37  Aligned_cols=34  Identities=26%  Similarity=0.222  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ =-....|..|... |. +.++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~-~~k~~~C~~C   46 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVL-HM-GQKNSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HS-CCSCCCTTCC
T ss_pred             CEEccccChhhCCHHHHHHHHHH-hC-CCCCCCCCCC
Confidence            699999999 4457889999765 54 3466889998

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.32  E-value=0.021  Score=33.57  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ =-....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQKV-HTG-ERPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHTT-SCS-CCSSCCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHh-hCC-CCCCCCCCC
Confidence            699999999 5567889999765 543 467889998

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.32  E-value=0.03  Score=32.81  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=26.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ep0_A           12 PYKCDVCHKSFRYGSSLTVHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSS-SCCCSCCCC
T ss_pred             CeeCcccCcccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5567889999764 543 467889998

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.30  E-value=0.026  Score=33.19  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ --....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRV-HTG-EKLSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HHC-CCCCCSCCC
T ss_pred             CeECcccCchhCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            699999999 5566889999875 543 456889998

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.29  E-value=0.026  Score=33.22  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWIT-HTR-EKPSGPSSG   46 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTH-HHH-CCCCSCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            699999999 5567889999876 443 356789998

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.29  E-value=0.034  Score=32.47  Aligned_cols=34  Identities=21%  Similarity=0.149  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQRV-HMG-EKCSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT-TCC-SCSSCCSCC
T ss_pred             CeECCCcCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4467888999754 543 457889988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.20  E-value=0.037  Score=32.12  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ --....|..|... |.. .+.-.|++|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   44 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQT-HAE-EKPSGPSSG   44 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH-HTS-SCSCSCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5567889999875 543 466889988

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.08  E-value=0.038  Score=32.38  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TTT-SCCCCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5566789999864 543 467889987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.08  E-value=0.044  Score=32.18  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|++|++ --....|..|... |.. .++-.|+||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~~   46 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCC-CCSSCSSCC
T ss_pred             CEECCcCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            699999999 5567889999765 543 467889987

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=94.04  E-value=0.14  Score=34.09  Aligned_cols=51  Identities=16%  Similarity=0.373  Sum_probs=38.9

Q ss_pred             CcccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhc
Q 030491           45 PDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        45 ~~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH   97 (176)
                      ..|.||+  |++ --....|..|+...+.  .+...|++|....  ..+|..|+...+
T Consensus        44 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           44 KPYKCTWEGCDWRFARSDELTRHYRKHTG--AKPFQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHTS--CCSCBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHHhCC--CCCeECCCCcCccCCHHHHHHHHHHhC
Confidence            3699986  999 5577899999976433  4568999998764  568999987543

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.04  E-value=0.028  Score=33.57  Aligned_cols=36  Identities=25%  Similarity=0.225  Sum_probs=28.2

Q ss_pred             CcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCccc
Q 030491           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS   82 (176)
Q Consensus        45 ~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICa   82 (176)
                      ..|.|++|++ --....|..|... |.. .++-.|++|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C~   47 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSSGPSS   47 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCS-CCCCCSCCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHh-cCC-CCCccCCCCC
Confidence            4699999999 4567889999765 543 4678999995

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=93.94  E-value=0.049  Score=40.48  Aligned_cols=52  Identities=25%  Similarity=0.386  Sum_probs=42.1

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++ =-....|..|.. .|.. .++..|++|...-  ..+|..|+...|+-
T Consensus        50 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           50 KYPCRYCEKVFPLAEYRTKHEI-HHTG-ERRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH-HHHT-CCCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CeeCCccCeecccccchhhhcc-ccCC-CccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            599999999 456788999976 4654 4578999998764  67999999999874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=93.88  E-value=0.088  Score=34.34  Aligned_cols=49  Identities=16%  Similarity=0.345  Sum_probs=37.0

Q ss_pred             CcccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhh
Q 030491           45 PDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (176)
Q Consensus        45 ~~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~   95 (176)
                      ..|.||+  |+. --....|..|... |.. .+...|++|....  ..+|..|+..
T Consensus        34 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           34 KPYHCDWDGCGWKFARSDELTRHYRK-HTG-HRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH-HHC-CCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCcCCCCCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCCCcccCCHHHHHHHHHh
Confidence            3699986  999 4477889999865 443 3568999998764  5688888753

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.70  E-value=0.032  Score=32.73  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+.|++ --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRRV-HTG-GKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTHH-HHS-CCCSCSCCC
T ss_pred             CeECCcCCchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            699999999 4456788899764 544 367889998

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=93.65  E-value=0.089  Score=38.08  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=40.0

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCc--ccccc--hhhHHHHhhhhccc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPI--Caa~~--s~d~l~HL~~rH~~   99 (176)
                      .|.|++|++. -+...|..|+...+.  .+...|++  |....  ..+|..|+...++.
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  118 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRVHTG--EKPFPCPFPGCGKIFARSENLKIHKRTHTGE  118 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHHHHC--CCSEECSCTTTCCEESCHHHHHHHHTTTCSS
T ss_pred             ccCCCCcccccCCHHHHHHHHHhcCC--CCcccCCcCCCCCccCCHHHHHHHHHhhCCC
Confidence            3899999994 467889999986543  45689998  98764  56899999876653

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=93.40  E-value=0.22  Score=31.59  Aligned_cols=49  Identities=20%  Similarity=0.404  Sum_probs=36.8

Q ss_pred             CCcccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCc--ccccc--hhhHHHHhh
Q 030491           44 RPDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHIT   94 (176)
Q Consensus        44 r~~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPI--Caa~~--s~d~l~HL~   94 (176)
                      ...|.|++  |++ --....|..|... |. +.+...|++  |....  ..+|..|+.
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~-~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRT-HT-GEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHH-HS-SSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHh-cC-CCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            45799999  999 5567889999975 43 346789976  98764  567888874

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.25  E-value=0.027  Score=38.97  Aligned_cols=54  Identities=15%  Similarity=0.114  Sum_probs=40.8

Q ss_pred             CCcccCCCCCCCC---CHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhccc
Q 030491           44 RPDFPCPYCYEDF---DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (176)
Q Consensus        44 r~~F~CPFC~e~f---Dv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH~~   99 (176)
                      +..+.|++|+..|   ....|..|... |.. .++..|++|....  ..+|..|+...|..
T Consensus        48 ~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           48 DNHETDNNNPKRWSKPRKRSLLEMEGK-EDA-QKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             SCCCCCCCCCSCCSSCCCCCCCCCCCS-CCC-CSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CCCccCCCCCcccccccHHHHHHHhhc-cCC-CcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            4456799999976   67788889765 443 4668999998764  57899999877754

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=93.25  E-value=0.13  Score=35.16  Aligned_cols=51  Identities=24%  Similarity=0.509  Sum_probs=39.9

Q ss_pred             cccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecC--cccccc--hhhHHHHhhhhcc
Q 030491           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCP--ICaa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|++  |++ -.+...|..|+...+.  .+...|+  +|....  ..+|..|+...++
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   63 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRKHTG--EKPYQCDFKDCERRFSRSDQLKRHQRRHTG   63 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHHHHT--TCCEECCSTTCCCEESSHHHHHHHHHHHHC
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHhhCC--CCCccCCCCCCcCccCCHHHHHHHHHHcCC
Confidence            699998  999 5578899999985433  4568999  798764  5789999987654

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=92.43  E-value=0.058  Score=34.36  Aligned_cols=36  Identities=22%  Similarity=0.471  Sum_probs=26.6

Q ss_pred             cccCCCCCCCCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        46 ~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      .|.||.|++.|....-..   ..|.. .+...|++|....
T Consensus        14 ~~~C~~C~k~F~~~~~l~---~~H~~-~k~~~C~~C~k~f   49 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQ---LFDPM-TGTFRCTFCHTEV   49 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETT-TTEEBCSSSCCBC
T ss_pred             CccCCCCCchhccHHHhH---hhcCC-CCCEECCCCCCcc
Confidence            699999999887655333   55654 4678999997653

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.15  E-value=0.15  Score=29.53  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=24.6

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++.| ....|..|... |..+ ++-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQRI-HTGE-NPSGPSS   45 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHGG-GSSS-CCCSSSC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            59999999954 66788899875 5443 5677875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.08  E-value=0.12  Score=30.15  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~   45 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQKT-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCC-CCCCCSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            599999999 5567788899865 544 35677875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=92.06  E-value=0.15  Score=38.25  Aligned_cols=51  Identities=20%  Similarity=0.331  Sum_probs=40.1

Q ss_pred             cccC--CCCCC-CCCHHHHHhhhhhhccCCCcceecCc--ccccc--hhhHHHHhhhhcc
Q 030491           46 DFPC--PYCYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        46 ~F~C--PFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI--Caa~~--s~d~l~HL~~rH~   98 (176)
                      .|.|  +.|++ --....|..|+.. |.. .+...||+  |...-  ..+|..|+...+|
T Consensus       104 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          104 VYVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CCEECSSSSCEECSSHHHHHHHHGG-GSS-SCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             eeeCCCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            6999  77999 5678899999876 433 45688988  98764  5789999987766

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.99  E-value=0.052  Score=35.56  Aligned_cols=46  Identities=17%  Similarity=0.532  Sum_probs=28.7

Q ss_pred             CCCCCcccCCCCCCCCCHH-H------HHhhhhhhccCC-CcceecCcccccch
Q 030491           41 DDVRPDFPCPYCYEDFDIA-S------LCSHLEDEHSCE-SKVTVCPICSVKVA   86 (176)
Q Consensus        41 dd~r~~F~CPFC~e~fDv~-~------L~~H~~eeH~~e-~k~vVCPICaa~~s   86 (176)
                      ++....+.||.|.+.+... .      +|..|....... .....||+|...+.
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            3556789999998855532 1      123344444332 35678999988764

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.89  E-value=0.12  Score=31.82  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=23.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCC
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE   72 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e   72 (176)
                      -|.||.|-+ =-+...|..|-+..|..+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            599999999 567889999999999865

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=91.71  E-value=0.068  Score=39.29  Aligned_cols=47  Identities=32%  Similarity=0.766  Sum_probs=32.6

Q ss_pred             cccCCCCCCCCCC-CCCcccCCCCCC--CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           30 DRLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        30 d~~g~d~~~~ddd-~r~~F~CPFC~e--~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      |.+.+||++-|++ ..-.|+|| ||.  .++...|-.        ..-.|.||-|+-.+
T Consensus         6 deV~LeDm~~de~~~~y~ypCr-CGd~F~IteedLe~--------ge~iv~C~sCSL~I   55 (89)
T 2jr7_A            6 DEVEIEDFQYDEDSETYFYPCP-CGDNFSITKEDLEN--------GEDVATCPSCSLII   55 (89)
T ss_dssp             CEEETTTSEEETTTTEEEEECT-TSSEEEEEHHHHHH--------TCCEEECTTTCCEE
T ss_pred             eEEEHHHcEEcCCCCEEEEcCC-CCCEEEECHHHHhC--------CCEEEECCCCccEE
Confidence            3455666664433 34579999 999  777888853        12368899999876

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.52  E-value=0.21  Score=29.00  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=24.2

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++. -....|..|... |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQRV-HTGE-KPSGPSS   45 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGGG-GCCC-CCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCCC-CCCCCCC
Confidence            5999999994 456788899764 5443 5667775

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=90.96  E-value=0.1  Score=37.73  Aligned_cols=47  Identities=32%  Similarity=0.767  Sum_probs=32.2

Q ss_pred             cccCCCCCCCCCCC-CCcccCCCCCC--CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           30 DRLSIDDFEVEDDV-RPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        30 d~~g~d~~~~ddd~-r~~F~CPFC~e--~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      |.+.+||++-+++. .-.|+|| ||.  .++...|..        ..-.|.||-|+-.+
T Consensus        13 dev~LeDm~~de~~~~y~y~Cr-CGd~F~it~edL~~--------ge~iv~C~sCSL~I   62 (83)
T 1wge_A           13 DEVEIEDFQYDEDSETYFYPCP-CGDNFAITKEDLEN--------GEDVATCPSCSLII   62 (83)
T ss_dssp             CEEEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHT--------TCCEEECTTTCCEE
T ss_pred             EEEEHHHceEccCCCEEEEeCC-CCCEEEECHHHHhC--------CCEEEECCCCceEE
Confidence            34556666654433 4579999 998  777777752        12368899999875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.91  E-value=0.2  Score=29.13  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=24.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ =-....|..|... |.. .+.-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2emi_A           12 HYECSECGKAFIQKSTLSMHQRI-HRG-EKPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGG-GCS-CCCCSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHhH-hCC-CCCCCCCC
Confidence            599999999 4456888899765 543 35667765

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.59  E-value=0.26  Score=28.60  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=23.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ =-....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRG-IHTG-EKPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHT-TTTT-SSCCCCSC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-hhCC-CCCCCCCC
Confidence            599999999 445677888975 4543 35677775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.49  E-value=0.25  Score=28.70  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=23.7

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++.| ....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRG-IHTG-EKPSGPSS   45 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT-TTSC-SCCSSTTC
T ss_pred             CeECCCCCcccCChhHHHHHhH-hcCC-CCCCCCCC
Confidence            59999999944 5677888965 4544 35667775

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.49  E-value=0.28  Score=28.57  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=23.8

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|+.|++. -....|..|... |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQRV-HTGE-KPSGPSS   45 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGGG-GTTC-CCSSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHh-cCCC-CCCCCCC
Confidence            5999999994 466788899764 5443 5667764

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.36  E-value=0.23  Score=29.06  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=24.1

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|+.|++ =-....|..|... |.. .+.-.||+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2eon_A           12 PYKCQVCGKAFRVSSHLVQHHSV-HSG-ERPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHTTT-TTS-CCSCTTSC
T ss_pred             ccCCCCCCcccCcHHHHHHHHHh-cCC-CCCCCCCC
Confidence            699999999 4556778899764 544 35677775

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=90.30  E-value=0.19  Score=26.09  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=20.0

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCC
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCE   72 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e   72 (176)
                      .|.|+.|+..| ....|..|+...|..+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            48899999955 5578888966666543

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.21  E-value=0.3  Score=28.34  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=24.2

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++.| ....|..|... |.. .+.-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~   45 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQKI-HTG-ERPSGPSS   45 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT-TSC-CCCSCSCC
T ss_pred             CEECCccCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            59999999944 56788999764 543 35667775

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.06  E-value=0.27  Score=28.41  Aligned_cols=33  Identities=24%  Similarity=0.223  Sum_probs=24.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2eow_A           12 PYKCNECGKAFRARSSLAIHQAT-HSG-EKPSGPSS   45 (46)
T ss_dssp             CEECTTSCCEESSHHHHHHHHHH-HCC-CSCSCTTC
T ss_pred             CeeccccCChhcCHHHHHHHHHH-cCC-CCCCCCCC
Confidence            599999999 5567788899865 544 35677775

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=90.00  E-value=0.38  Score=33.35  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=27.4

Q ss_pred             CCCCcccCCCCC------------CCCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           42 DVRPDFPCPYCY------------EDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        42 d~r~~F~CPFC~------------e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      +....|.||.|.            -.|+...+..++..       ...||+|....
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l   58 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-------SPTDPFNRQML   58 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-------CSBCTTTCCBC
T ss_pred             cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-------CCCCCCCcCCC
Confidence            456789999984            35677777777763       35899998764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=89.97  E-value=0.2  Score=35.01  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=25.5

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESK   74 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k   74 (176)
                      .|.|++|++ =.....|..|++..|..|.+
T Consensus        56 ~~~C~~C~k~F~~~~~L~~H~~~~H~~E~R   85 (85)
T 2lv2_A           56 VFPCKYCPATFYSSPGLTRHINKCHPSENR   85 (85)
T ss_dssp             SEECTTSSCEESSHHHHHHHHHTTCTTCCC
T ss_pred             ccCCCCCCCEeCCHHHHHHhCcccCcCCCC
Confidence            699999999 55888999999999998764

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=89.77  E-value=0.087  Score=38.16  Aligned_cols=47  Identities=32%  Similarity=0.784  Sum_probs=32.0

Q ss_pred             cccCCCCCCCCCC-CCCcccCCCCCC--CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           30 DRLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        30 d~~g~d~~~~ddd-~r~~F~CPFC~e--~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      |.+.+||++-|++ ..-.|+|| ||.  .++...|..        .--.+.||-|+-.+
T Consensus         6 dev~leDm~~de~~~~y~ypCr-CGd~F~it~edL~~--------ge~iv~C~sCSL~I   55 (83)
T 1yop_A            6 DEIEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFE--------GEKVAVCPSCSLMI   55 (83)
T ss_dssp             BCCBGGGSEEETTTTEEEEEET-TTEEEEEEHHHHHT--------TCCEEECSSSCCEE
T ss_pred             eEEEHHHcEEcCCCCEEEEeCC-CCCeEEECHHHHhC--------CCEEEECCCCccEE
Confidence            3445666554433 34579999 998  777777742        23468899999876

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.72  E-value=0.28  Score=28.38  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=24.1

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~p~~C~~   45 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRR-IHTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG-GTSS-CCSSCCCC
T ss_pred             CEECCCCChhhCChHHHHHHHH-hcCC-CCCcCCCC
Confidence            599999999 556778889975 4543 35667775

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=89.67  E-value=0.46  Score=34.08  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=26.5

Q ss_pred             CCCCCcccCCCCCC-------------CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           41 DDVRPDFPCPYCYE-------------DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        41 dd~r~~F~CPFC~e-------------~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      .+.+..|.||.|.+             .|+..-+..++..       ...||+|....
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-------~~~cP~~~~~l   67 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-------DQTDPFNRSPL   67 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-------SCBCTTTCSBC
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-------CCCCCCCCCCC
Confidence            35577999999843             4566666666653       35899998864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.62  E-value=0.38  Score=27.95  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=24.1

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++. -....|..|... |.. .+.-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2en9_A           12 LFKCNECKKTFTQSSSLTVHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-HTS-SCCCSCCC
T ss_pred             CEECCccCcccCCHHHHHHHHHH-cCC-CCCCCCCC
Confidence            6999999994 456788899765 543 35677775

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=89.55  E-value=0.28  Score=28.59  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=24.2

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2emj_A           12 PFECAECGKSFSISSQLATHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH-HTT-SCSSSSCC
T ss_pred             CEECCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            599999999 5566788899765 543 35667775

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.52  E-value=0.34  Score=28.09  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++.| ....|..|... |.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2eq1_A           12 PYKCNECGKAFRAHSNLTTHQVI-HTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCTTTTCCCSSHHHHHHHHTT-TCC-SCCSSCCC
T ss_pred             CeECCcCChhhCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            59999999954 56788899764 543 35567764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.50  E-value=0.3  Score=28.45  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=24.0

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++. -....|..|... |.. .+.-.||+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2em4_A           12 PYECIECGKAFKTKSSLICHRRS-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSS-SSCCCCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-cCC-CCCCCCCC
Confidence            5999999994 456788899765 543 45677775

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.32  E-value=0.29  Score=28.32  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=24.1

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2ytf_A           12 PFECSECQKAFNTKSNLIVHQRT-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHT-SCS-SSSSCCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            599999999 5567788899764 543 35567765

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.31  E-value=0.39  Score=27.67  Aligned_cols=33  Identities=24%  Similarity=0.176  Sum_probs=24.0

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|+.|++. .....|..|... |.. .+...|+|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   43 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTLQ-THS-DKSGPSSG   43 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHHH-HTC-TTCSSSCC
T ss_pred             CEECCCCCCeeCChHHHHHHHHh-hCC-CCCccCCC
Confidence            5999999994 466788899765 443 35667775

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.30  E-value=0.17  Score=31.46  Aligned_cols=40  Identities=18%  Similarity=0.509  Sum_probs=22.4

Q ss_pred             CCCCcccCCCCCCCCCHHH-------HHhhhhhhccCC-CcceecCcc
Q 030491           42 DVRPDFPCPYCYEDFDIAS-------LCSHLEDEHSCE-SKVTVCPIC   81 (176)
Q Consensus        42 d~r~~F~CPFC~e~fDv~~-------L~~H~~eeH~~e-~k~vVCPIC   81 (176)
                      +....+.||.|.+.+....       .+..|....... .....||+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4556889999988554321       122344443221 245678887

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.09  E-value=0.3  Score=28.42  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=24.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .+.-.||+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2ytp_A           12 HYECSECGKAFARKSTLIMHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTT-TSC-CCCCSSCC
T ss_pred             CeECCcCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            599999999 5567888999764 543 35677775

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=88.96  E-value=0.12  Score=34.33  Aligned_cols=45  Identities=13%  Similarity=0.234  Sum_probs=26.3

Q ss_pred             CCCCCCcccCCCCCCCCCHHH--HHhh-----hhhhccCCCcceecCcccccc
Q 030491           40 EDDVRPDFPCPYCYEDFDIAS--LCSH-----LEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        40 ddd~r~~F~CPFC~e~fDv~~--L~~H-----~~eeH~~e~k~vVCPICaa~~   85 (176)
                      +++....|.||.|.+-|....  -|.|     |...+- ......||+|...+
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~-~~~~~~CP~C~~~~   53 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETL   53 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHH-TTTCCBCTTTCCBC
T ss_pred             CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHH-HHCcCCCCCCcCCC
Confidence            345667899999988544321  1222     333322 22367899998875

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=88.90  E-value=0.37  Score=27.28  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecC
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCP   79 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCP   79 (176)
                      .|.|++|++. -....|..|... |..+ +.-.||
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   42 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQRT-HAGE-SGPSSG   42 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GCCC-CSCCCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHh-cCCC-CCCCCC
Confidence            5999999994 456778888764 5433 455564

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.73  E-value=0.32  Score=28.10  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=23.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2yrj_A           12 PYRCGECGKAFAQKANLTQHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTT-TSS-CCSSCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-cCC-CCCCCCCC
Confidence            599999999 4566788889764 543 35667765

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.69  E-value=0.33  Score=28.03  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=24.0

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .++-.|||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~kp~~C~~   45 (46)
T 2eor_A           12 PYNCEECGKAFIHDSQLQEHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-HHS-CCCSSSTT
T ss_pred             CccCCCCCCCcCCHHHHHHHHHh-cCC-CCCCCCCC
Confidence            599999999 4466788899765 543 35567875

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.58  E-value=0.1  Score=33.42  Aligned_cols=18  Identities=17%  Similarity=0.658  Sum_probs=13.3

Q ss_pred             CCCCCCcccCCCCCCCCC
Q 030491           40 EDDVRPDFPCPYCYEDFD   57 (176)
Q Consensus        40 ddd~r~~F~CPFC~e~fD   57 (176)
                      .++....+.||.|.+.+.
T Consensus        14 ~~~~~~~~~C~IC~~~~~   31 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQ   31 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCS
T ss_pred             HHhCccCCCCCcCCchhC
Confidence            345667899999988554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.32  E-value=0.48  Score=27.52  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=23.9

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|+.|++.| ....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2em6_A           12 CYKCDVCGKEFSQSSHLQTHQR-VHTG-EKPSGPSS   45 (46)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHT-TTSS-SCCCCTTC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HcCC-CCCCCCCC
Confidence            59999999955 5678889965 4543 35667764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=88.22  E-value=0.37  Score=24.57  Aligned_cols=24  Identities=29%  Similarity=0.703  Sum_probs=17.7

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEH   69 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH   69 (176)
                      .|.|+.|+..| ....|..|....|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHc
Confidence            37899999955 5577888877544

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.15  E-value=0.07  Score=36.00  Aligned_cols=46  Identities=24%  Similarity=0.485  Sum_probs=26.7

Q ss_pred             CCCCCCCcccCCCCCCCCCHHHH--Hhh-----hhhhccCCCcceecCcccccch
Q 030491           39 VEDDVRPDFPCPYCYEDFDIASL--CSH-----LEDEHSCESKVTVCPICSVKVA   86 (176)
Q Consensus        39 ~ddd~r~~F~CPFC~e~fDv~~L--~~H-----~~eeH~~e~k~vVCPICaa~~s   86 (176)
                      .+++....+.||.|.+.+....+  |.|     |.....  .....||+|...+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~   60 (81)
T 2csy_A            8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF--RATPRCYICDQPTG   60 (81)
T ss_dssp             CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH--HHCSBCSSSCCBCC
T ss_pred             CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH--HCCCcCCCcCcccc
Confidence            34455678999999885543211  222     332222  12457999988764

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=87.93  E-value=0.5  Score=36.17  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=27.4

Q ss_pred             CCcccCCCCCC-CCCHHHHHhhhhhhccCCCcc
Q 030491           44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKV   75 (176)
Q Consensus        44 r~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~   75 (176)
                      ...+.|=||.+ --+...+..||.+.|.++-..
T Consensus        13 ~~~~~CLFCd~~~~s~~~~l~H~k~~H~FD~~~   45 (121)
T 1wir_A           13 RQHTPCLFCDRLFASAEETFSHCKLEHQFNIDS   45 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHSSCCCHHH
T ss_pred             CCceeEecCCCcccCHHHHHHHHHHhcCCCHHH
Confidence            35699999999 679999999999999997554

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=87.79  E-value=0.051  Score=37.34  Aligned_cols=46  Identities=20%  Similarity=0.447  Sum_probs=28.0

Q ss_pred             CCCCCCcccCCCCCCCCCH-HHH--Hhh-----hhhhccCCCcceecCcccccc
Q 030491           40 EDDVRPDFPCPYCYEDFDI-ASL--CSH-----LEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        40 ddd~r~~F~CPFC~e~fDv-~~L--~~H-----~~eeH~~e~k~vVCPICaa~~   85 (176)
                      ++++...|.||.|.+.|.. ..|  |.|     |...+-.......||+|....
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            3456678999999874432 222  334     444443334457999998763

>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4

Probab=87.75  E-value=0.11  Score=37.79  Aligned_cols=37  Identities=19%  Similarity=0.668  Sum_probs=23.7

Q ss_pred             CCCcccCCCCCCCCCHHHHHhhhhhhccCCCcceecCccccc
Q 030491           43 VRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        43 ~r~~F~CPFC~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~   84 (176)
                      +...|.||||+-+=.     ..|.-......-.+.|-||-..
T Consensus        20 L~t~F~CPfCnh~~s-----V~vkidk~~~~g~l~C~~Cg~~   56 (85)
T 1wii_A           20 LETQFTCPFCNHEKS-----CDVKMDRARNTGVISCTVCLEE   56 (85)
T ss_dssp             CSSCCCCTTTCCSSC-----EEEEEETTTTEEEEEESSSCCE
T ss_pred             CCCeEcCCCCCCCCe-----EEEEEEccCCEEEEEcccCCCe
Confidence            456899999987321     1233333344556889999875

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.63  E-value=0.47  Score=26.98  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=22.2

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecC
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCP   79 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCP   79 (176)
                      .|.|++|++ --....|..|... |..+ +.-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   44 (44)
T 2eof_A           12 PYECNECQKAFNTKSNLMVHQRT-HTGE-SGPSSG   44 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHH-TTTS-SCSCCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHH-hCCC-CCCCCC
Confidence            599999999 5567788889765 5433 445554

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.61  E-value=0.32  Score=28.29  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=23.8

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|+.|++.| ....|..|.. .|....+.-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C~~   46 (46)
T 2eoy_A           12 CFKCNKCEKTFSCSKYLTQHER-IHTRGVKSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSSHHHHHHHT-TCCSCCTTSSSCC
T ss_pred             CEECcCCCCcCCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            59999999944 5678888975 4554245667765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.51  E-value=0.41  Score=30.56  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=28.5

Q ss_pred             cccCCC--CCC-CCCHHHHHhhhhhhccCCCcceecCcccc
Q 030491           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSV   83 (176)
Q Consensus        46 ~F~CPF--C~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa   83 (176)
                      .|.|++  |++ =-....|..|+.. |.. .+.-.|++|..
T Consensus        38 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~k   76 (79)
T 2dlk_A           38 SFSCPEPACGKSFNFKKHLKEHMKL-HSD-TRDYICEFSGP   76 (79)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHH-HHT-SCCCSCCSSSC
T ss_pred             CeECCCCCCcCccCCHHHHHHHHHH-hCC-CCCeeCCCCCC
Confidence            699999  999 5567889999985 443 36689999965

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=87.48  E-value=0.59  Score=23.73  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=16.8

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhh
Q 030491           46 DFPCPYCYEDF-DIASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~e   67 (176)
                      .|.|+.|++.| ....|..|...
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            48899999954 56778888765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=87.40  E-value=1.4  Score=29.16  Aligned_cols=51  Identities=25%  Similarity=0.540  Sum_probs=37.1

Q ss_pred             ccCCC--CCCC-CCHHHHHhhhhhhccCCC-----cceecC--ccccc--chhhHHHHhhhhc
Q 030491           47 FPCPY--CYED-FDIASLCSHLEDEHSCES-----KVTVCP--ICSVK--VARDMLSHITLQH   97 (176)
Q Consensus        47 F~CPF--C~e~-fDv~~L~~H~~eeH~~e~-----k~vVCP--ICaa~--~s~d~l~HL~~rH   97 (176)
                      |.|-.  |++. -+..+|+.|+..+|-...     .+.+|.  -|...  ....|+.||...|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            34444  8884 456779999999998654     367887  78765  3568999998776

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.18  E-value=0.33  Score=28.26  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=23.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .+.-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~   45 (46)
T 2eoz_A           12 PYSCNVCGKAFVLSAHLNQHLRV-HTQ-ETLSGPSS   45 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHHHH-HSS-CCSSSCCC
T ss_pred             CeECcccChhhCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            599999999 5566788899765 543 34566764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=87.15  E-value=0.42  Score=29.04  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=23.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCC
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCES   73 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~   73 (176)
                      .|.||+|++ --....|..|+...|..+.
T Consensus        30 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A           30 PYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            699999999 4577899999988887653

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.13  E-value=0.41  Score=30.81  Aligned_cols=29  Identities=31%  Similarity=0.543  Sum_probs=24.5

Q ss_pred             CcccCCCCCC-CCCHHHHHhhhhhhccCCC
Q 030491           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCES   73 (176)
Q Consensus        45 ~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~   73 (176)
                      ..|.|++|++ --....|..|+...|..+.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3699999999 4578899999999998754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=87.13  E-value=0.37  Score=36.70  Aligned_cols=40  Identities=25%  Similarity=0.541  Sum_probs=17.9

Q ss_pred             CCCCCCHHHHHhhhhhhccCCCcceecCcccccc-hhhHHHHhh
Q 030491           52 CYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV-ARDMLSHIT   94 (176)
Q Consensus        52 C~e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~-s~d~l~HL~   94 (176)
                      |.+.+....|..|.. +  =+-+.+.||-|...+ ..++..|+.
T Consensus        90 C~~~~~~~~l~~H~~-~--C~~~~v~C~~C~~~~~r~~l~~H~~  130 (170)
T 3hcs_A           90 CLHKMELRHLEDHQA-H--CEFALMDCPQCQRPFQKFHINIHIL  130 (170)
T ss_dssp             CCCEEEGGGHHHHHT-T--CTTSEEECTTTCCEEEGGGHHHHHH
T ss_pred             CCceecHhHHHHHHh-c--CCceeeECCCCChHHHHHHHHHHhh
Confidence            555445555555531 1  122345555555432 344555553

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.05  E-value=0.64  Score=27.02  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=23.6

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++.| ....|..|... |.. .++-.|.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2eom_A           12 GHRCSDCGKFFLQASNFIQHRRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-HSS-CCCSSCCC
T ss_pred             CcCCCCCCCeeCChHHHHHHHHH-hCC-CCCCCCCC
Confidence            59999999955 56788899765 543 35566654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=86.90  E-value=0.64  Score=33.41  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             CCCCcccCCCCCC------------CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           42 DVRPDFPCPYCYE------------DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        42 d~r~~F~CPFC~e------------~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      +.+..|.||.|.+            .|+...+..++..       ...||+|....
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l   73 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-------SPTDPFNRQTL   73 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-------CSBCSSSCCBC
T ss_pred             cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-------CCCCCCCCCCC
Confidence            4577999999854            4555666666542       36899998864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.40  E-value=0.36  Score=27.94  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=23.4

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++. -....|..|... |.. .+.-.||+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (45)
T 2epu_A           12 PFECTHCGKSFRAKGNLVTHQRI-HTG-EKSGPSSG   45 (45)
T ss_dssp             SEEETTTTEEESSHHHHHHHHTT-TSS-CCCCCSCC
T ss_pred             CccCCCCCCccCChHHHHHHHHH-hCC-CCCCCCCC
Confidence            5999999994 456778889754 543 35667775

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.31  E-value=0.49  Score=27.46  Aligned_cols=33  Identities=27%  Similarity=0.292  Sum_probs=23.0

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++. -....|..|... |.. .+.-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2emz_A           12 PFKCNECGKGFGRRSHLAGHLRL-HSR-EKSSGPSS   45 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-HHH-TTCCCSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            5999999994 456778889765 433 34566764

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=86.27  E-value=1.3  Score=29.13  Aligned_cols=45  Identities=22%  Similarity=0.499  Sum_probs=26.6

Q ss_pred             CCCCcccCCCCCCCCCHHH--HHhh-----hhhhccC----CCcceecCcccccch
Q 030491           42 DVRPDFPCPYCYEDFDIAS--LCSH-----LEDEHSC----ESKVTVCPICSVKVA   86 (176)
Q Consensus        42 d~r~~F~CPFC~e~fDv~~--L~~H-----~~eeH~~----e~k~vVCPICaa~~s   86 (176)
                      +....|.||.|.+.+....  -|.|     |...+..    +.....||+|...+.
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            4566899999988554321  1323     3333222    234788999988764

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.95  E-value=0.64  Score=26.90  Aligned_cols=34  Identities=24%  Similarity=0.147  Sum_probs=26.2

Q ss_pred             cccCC--CCCC-CCCHHHHHhhhhhhccCCCcceecCcc
Q 030491           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (176)
Q Consensus        46 ~F~CP--FC~e-~fDv~~L~~H~~eeH~~e~k~vVCPIC   81 (176)
                      .|.|+  .|++ -.....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   48 (48)
T 2ent_A           12 PFACTWPGCGWRFSRSDELSRHRRS-HSG-VKPSGPSSG   48 (48)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHTT-SCC-CCSCSSCCC
T ss_pred             CeECCCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            69997  8999 5567889999765 543 467889988

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.94  E-value=0.92  Score=25.44  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=21.3

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceec
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVC   78 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVC   78 (176)
                      .|.|+.|++. -....|..|... |..+ ++-.|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C   41 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQKM-HTVK-SGPSS   41 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH-TSCC-SSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-hCCC-CCCCC
Confidence            5999999994 456778888765 5443 34444

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=85.71  E-value=0.65  Score=29.85  Aligned_cols=37  Identities=11%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             CcccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccc
Q 030491           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV   83 (176)
Q Consensus        45 ~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa   83 (176)
                      ..|.|+.|++ --....|..|....|.  .+...|++|..
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~h~~--~~~~~~~~~~~   83 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADNCAG--PDGVEGENSGP   83 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC--CCSCCCCCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHHccC--CCCcccCCCCC
Confidence            4799999999 5578899999987755  34567888864

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=85.63  E-value=0.3  Score=33.80  Aligned_cols=42  Identities=21%  Similarity=0.576  Sum_probs=26.4

Q ss_pred             CCcccCCCCCCCCCHHHH------Hhh-----hhhhccCCCcceecCcccccch
Q 030491           44 RPDFPCPYCYEDFDIASL------CSH-----LEDEHSCESKVTVCPICSVKVA   86 (176)
Q Consensus        44 r~~F~CPFC~e~fDv~~L------~~H-----~~eeH~~e~k~vVCPICaa~~s   86 (176)
                      ...+.||.|-+.++....      |-|     |-.... +..+..||+|...+.
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~-~~~~~~CP~CR~~~~   61 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACRKPYP   61 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT-TSSCSBCTTTCCBCS
T ss_pred             ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHH-hcCCCCCCCCCCccC
Confidence            347899999997754311      333     333332 224678999998764

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=85.63  E-value=0.19  Score=33.21  Aligned_cols=45  Identities=27%  Similarity=0.638  Sum_probs=27.4

Q ss_pred             CCCCcccCCCCCCCCCHH-------HHHhhhhhhccCC-----CcceecCcccccch
Q 030491           42 DVRPDFPCPYCYEDFDIA-------SLCSHLEDEHSCE-----SKVTVCPICSVKVA   86 (176)
Q Consensus        42 d~r~~F~CPFC~e~fDv~-------~L~~H~~eeH~~e-----~k~vVCPICaa~~s   86 (176)
                      ++...+.||.|.+.|...       .+|..|...+-..     .....||+|...+.
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            455689999998744432       1233344444333     23678999988764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.61  E-value=0.77  Score=26.57  Aligned_cols=32  Identities=22%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecC
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCP   79 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCP   79 (176)
                      .|.|++|++.| ....|..|... |.. .+.-.||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~   44 (46)
T 2eoh_A           12 PYECKECRKTFIQIGHLNQHKRV-HTG-ERSSGPS   44 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-CSS-CCSCSTT
T ss_pred             CcCCCCcCchhCCHHHHHHHHHH-hCC-CCCCCCC
Confidence            59999999954 56788889764 543 3456665

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.24  E-value=0.85  Score=25.83  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=21.9

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecC
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCP   79 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCP   79 (176)
                      .|.|++|++. -....|..|... |..+ +.-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   44 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTRT-HTGE-SGPSSG   44 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHTT-TCCS-SSSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHhhh-cCCC-CCCCCC
Confidence            5999999994 456778888754 5433 445554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=84.68  E-value=0.62  Score=27.86  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=18.3

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKV   75 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~   75 (176)
                      -|.|++|++ -.....|..|+...|..+...
T Consensus         7 p~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            7 PYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            478888888 445667778877566655443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.41  E-value=0.013  Score=36.97  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=28.4

Q ss_pred             cccCCCCCCCCCHH-HHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhhhc
Q 030491           46 DFPCPYCYEDFDIA-SLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        46 ~F~CPFC~e~fDv~-~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~rH   97 (176)
                      .|.|+.|++.|... .|..         .+...|++|....  ..+|..|+...+
T Consensus        18 ~~~C~~C~k~f~~~~~l~~---------~~~~~C~~C~~~f~~~~~l~~H~~~H~   63 (73)
T 2ctu_A           18 SQKCSKCGIIFIRRSTLSR---------RKTPMCEKCRKDSCQEAALNKDEGNES   63 (73)
T ss_dssp             EEECSSSCCEEECCCCCCC---------SSSCCCHHHHHTCSCCCSSCCCSSCCC
T ss_pred             CeeCCcccchhCCHHHhCc---------CCCCCCCCCChhhcCHHHHHHHHHhhc
Confidence            69999999855322 2222         4678899997654  457777776544

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.28  E-value=0.64  Score=26.74  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=22.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++ --....|..|... |.. .+.-.|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2eq3_A           12 PYECNQCGKAFSVRSSLTTHQAI-HTG-KKPSGPSS   45 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHTT-SCC-CCCCCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            599999999 4556778888764 543 34566653

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=84.26  E-value=0.99  Score=36.28  Aligned_cols=40  Identities=10%  Similarity=0.178  Sum_probs=29.4

Q ss_pred             CCCCCCcccCCCCC------------CCCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           40 EDDVRPDFPCPYCY------------EDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        40 ddd~r~~F~CPFC~------------e~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      +.+.+..|.||.|.            -.|+...+..|+...+     . .||+|....
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~-----~-tcP~t~~~l  151 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-----H-FDPVTRSPL  151 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-----S-BCTTTCCBC
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC-----C-CCCCCcCCC
Confidence            34567899999974            4577888888887631     1 699998764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=84.18  E-value=0.58  Score=27.99  Aligned_cols=24  Identities=33%  Similarity=0.620  Sum_probs=20.6

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEH   69 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH   69 (176)
                      .|.||+|+. --....|..|+...|
T Consensus        32 ~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C           32 PYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHHhc
Confidence            599999999 557888999998876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.98  E-value=0.87  Score=26.34  Aligned_cols=33  Identities=30%  Similarity=0.416  Sum_probs=22.8

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      .|.|++|++.| ....|..|... |.. .+.-.|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2enh_A           12 PYECDVCRKAFSHHASLTQHQRV-HSG-EKPSGPSS   45 (46)
T ss_dssp             SCBCTTTCCBCSSSHHHHHHGGG-SCC-SCCCCCCC
T ss_pred             CcCCCCcCchhCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            59999999955 45778888764 543 34566653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.97  E-value=0.34  Score=26.67  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=17.8

Q ss_pred             cccCCCCCCCCCH--HHHHhhhhh
Q 030491           46 DFPCPYCYEDFDI--ASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e~fDv--~~L~~H~~e   67 (176)
                      .|.|++|++.|..  ..|..|...
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CeECCCCChhhccCHHHHHHHHHh
Confidence            5999999997665  588899764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=83.94  E-value=0.68  Score=23.38  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=16.5

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhh
Q 030491           46 DFPCPYCYED-FDIASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~e   67 (176)
                      .|.|+.|++. .....|..|...
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            4789999994 457788888754

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.22  E-value=1.3  Score=25.26  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=21.8

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccCCCcceecC
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCP   79 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~e~k~vVCP   79 (176)
                      .|.|+.|++.| ....|..|... |.. .+.-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~   44 (44)
T 2eou_A           12 TSECQECGKIFRHSSLLIEHQAL-HAG-ESGPSSG   44 (44)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHH-HTT-SCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-HCC-CCCCCCC
Confidence            69999999955 56778889765 543 3444553

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.04  E-value=1  Score=25.64  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=21.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecC
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCP   79 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCP   79 (176)
                      .|.|+.|++ --....|..|... |..+ +.-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   44 (44)
T 2emb_A           12 RYECSKCQATFNLRKHLIQHQKT-HAAK-SGPSSG   44 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHGGG-GCCC-CCTTCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-cCCC-CCcCCC
Confidence            599999999 4566788888764 5433 344453

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=83.01  E-value=0.77  Score=28.35  Aligned_cols=25  Identities=24%  Similarity=0.737  Sum_probs=21.3

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhcc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHS   70 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~   70 (176)
                      .|.||+|++ --....|..|....|.
T Consensus        40 ~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           40 VYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHHcC
Confidence            699999999 4567889999988875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=82.76  E-value=1.2  Score=22.32  Aligned_cols=21  Identities=24%  Similarity=0.630  Sum_probs=15.4

Q ss_pred             ccCCCCCCCC-CHHHHHhhhhh
Q 030491           47 FPCPYCYEDF-DIASLCSHLED   67 (176)
Q Consensus        47 F~CPFC~e~f-Dv~~L~~H~~e   67 (176)
                      |.|+.|++.| ....|..|...
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            7899999855 45777788754

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.70  E-value=1.2  Score=28.42  Aligned_cols=29  Identities=24%  Similarity=0.443  Sum_probs=24.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCc
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESK   74 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k   74 (176)
                      .|.|++|++ --....|..|+...|..+..
T Consensus        38 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A           38 RFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             ccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            699999999 55678999999999987543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.58  E-value=0.86  Score=24.76  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=17.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhh
Q 030491           46 DFPCPYCYE-DFDIASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~e   67 (176)
                      .|.|++|++ --....|..|...
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            9 IFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH
T ss_pred             CEECCCCCceeCCHHHHHHHHHH
Confidence            699999999 4467788888764

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.57  E-value=0.23  Score=32.78  Aligned_cols=46  Identities=22%  Similarity=0.574  Sum_probs=25.8

Q ss_pred             CCCCCcccCCCCCCCCCHHH--HHhh-----hhhhccC----CCcceecCcccccch
Q 030491           41 DDVRPDFPCPYCYEDFDIAS--LCSH-----LEDEHSC----ESKVTVCPICSVKVA   86 (176)
Q Consensus        41 dd~r~~F~CPFC~e~fDv~~--L~~H-----~~eeH~~----e~k~vVCPICaa~~s   86 (176)
                      ++....+.||.|.+.+....  -|.|     |...+-.    +.....||+|...+.
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            34566899999988554321  1222     2222211    123678999988764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=82.52  E-value=0.72  Score=23.19  Aligned_cols=22  Identities=32%  Similarity=0.779  Sum_probs=15.9

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhh
Q 030491           46 DFPCPYCYEDF-DIASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~e   67 (176)
                      .|.|+.|++.| ....|..|...
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            47899999955 45677788754

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.50  E-value=0.97  Score=26.11  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhhhccCCCcceecC
Q 030491           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCP   79 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~eeH~~e~k~vVCP   79 (176)
                      .|.|++|++. -....|..|... |..+ ++-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~   44 (46)
T 2yto_A           12 PYKCSDCGKAFTRKSGLHIHQQS-HTGE-RHSGPS   44 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HTCC-CBTTTB
T ss_pred             CEECcccCCccCCHhHHHHHHHH-cCCC-CCCCCC
Confidence            5999999994 456788888765 5433 445554

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=82.45  E-value=0.62  Score=29.00  Aligned_cols=25  Identities=28%  Similarity=0.608  Sum_probs=22.2

Q ss_pred             ccCCCCCC-CCCHHHHHhhhhhhccC
Q 030491           47 FPCPYCYE-DFDIASLCSHLEDEHSC   71 (176)
Q Consensus        47 F~CPFC~e-~fDv~~L~~H~~eeH~~   71 (176)
                      --|-||-+ .-|+..|..|+.+.|-.
T Consensus        10 qhcrfckkkysdvknlikhire~hd~   35 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHDP   35 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            36999998 99999999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=82.43  E-value=1.3  Score=35.18  Aligned_cols=38  Identities=16%  Similarity=0.262  Sum_probs=24.6

Q ss_pred             CCCCcccCCCCCC------------CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           42 DVRPDFPCPYCYE------------DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        42 d~r~~F~CPFC~e------------~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      +....|.||.|.+            .|+..-+..++...      ...||+|...+
T Consensus       204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~------~~~cP~~~~~~  253 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV------GHFNPVTRSPL  253 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT------CSSCTTTCCCC
T ss_pred             CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC------CCCCcCCCCCC
Confidence            4567899999865            34455555555432      12399998875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=82.16  E-value=1.2  Score=24.17  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=17.2

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhh
Q 030491           46 DFPCPYCYEDF-DIASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~e   67 (176)
                      .|.|+.|++.| ....|..|...
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A           11 PFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CccCCCCCcccCcHHHHHHHHHH
Confidence            59999999954 56788888654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=81.99  E-value=0.99  Score=22.82  Aligned_cols=22  Identities=41%  Similarity=0.810  Sum_probs=17.2

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhh
Q 030491           46 DFPCPYCYEDF-DIASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~e   67 (176)
                      .|.|+.|++.| ....|..|...
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHHH
Confidence            58899999954 57788888764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=81.75  E-value=1.2  Score=23.67  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=17.9

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhh
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDE   68 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~ee   68 (176)
                      .|.|+.|++ -.....|..|....
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h   30 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIREV   30 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CeECCCCcchhCCHHHHHHHHHHH
Confidence            599999999 44567888887653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.39  E-value=0.95  Score=25.09  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhcc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHS   70 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~   70 (176)
                      .|.|+.|++.| ....|..|....|.
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            9 LYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             EEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHHcc
Confidence            59999999954 67888999555664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=81.30  E-value=0.92  Score=23.00  Aligned_cols=22  Identities=27%  Similarity=0.702  Sum_probs=16.4

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhh
Q 030491           46 DFPCPYCYEDF-DIASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~e   67 (176)
                      .|.|+.|++.| ....|..|...
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            48999999944 56778888653

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.92  E-value=0.91  Score=25.81  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=21.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecC
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCP   79 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCP   79 (176)
                      .|.|++|++ =-....|..|... |..+ +.-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   44 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQKT-HSGQ-SGPSSG   44 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHTT-SSSS-CSCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHH-cCCC-CCCCCC
Confidence            599999999 4456778888654 5433 345554

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.89  E-value=1.1  Score=24.41  Aligned_cols=23  Identities=22%  Similarity=0.522  Sum_probs=18.2

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhh
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDE   68 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~ee   68 (176)
                      .|.|++|++ -.....|..|....
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~h   32 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIKTN   32 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHHHH
Confidence            599999999 45667888898753

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.74  E-value=1.1  Score=28.15  Aligned_cols=28  Identities=29%  Similarity=0.489  Sum_probs=22.8

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCC
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCES   73 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~   73 (176)
                      .|.|++|++ --....|..|+...|...+
T Consensus        37 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A           37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            599999999 5577899999988876433

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.70  E-value=1.5  Score=24.45  Aligned_cols=24  Identities=29%  Similarity=0.628  Sum_probs=17.7

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhcc
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHS   70 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~   70 (176)
                      .|.|+.|++.| ....|..|... |.
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~-H~   35 (42)
T 2ytb_A           11 PYRCDQCGKAFSQKGSLIVHIRV-HT   35 (42)
T ss_dssp             SBCCTTTTCCBSSHHHHHTTGGG-TS
T ss_pred             CeeCCCccchhCCHHHHHHHHHH-hC
Confidence            59999999944 56778888764 54

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=80.70  E-value=0.32  Score=32.25  Aligned_cols=45  Identities=27%  Similarity=0.726  Sum_probs=26.4

Q ss_pred             CCCCcccCCCCCCCCCHHH-----HHhhhhhhccCC---CcceecCcccccch
Q 030491           42 DVRPDFPCPYCYEDFDIAS-----LCSHLEDEHSCE---SKVTVCPICSVKVA   86 (176)
Q Consensus        42 d~r~~F~CPFC~e~fDv~~-----L~~H~~eeH~~e---~k~vVCPICaa~~s   86 (176)
                      +....+.||.|.+.|....     -|.|.-=..+..   .....||+|...+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   63 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT   63 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence            4456789999988665331     255532222221   12358999988753

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=80.45  E-value=0.2  Score=33.38  Aligned_cols=44  Identities=23%  Similarity=0.486  Sum_probs=25.0

Q ss_pred             CCCCCcccCCCCCCCCCHH-HH--Hhh-----hhhhccCCCcceecCccccc
Q 030491           41 DDVRPDFPCPYCYEDFDIA-SL--CSH-----LEDEHSCESKVTVCPICSVK   84 (176)
Q Consensus        41 dd~r~~F~CPFC~e~fDv~-~L--~~H-----~~eeH~~e~k~vVCPICaa~   84 (176)
                      ++....+.||.|.+.|... .|  |.|     |....-.......||+|...
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~   61 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN   61 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence            3556789999998855432 12  223     22222222223579999875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=80.21  E-value=0.82  Score=23.25  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=15.6

Q ss_pred             cccCCCCCCC-CCHHHHHhhhhh
Q 030491           46 DFPCPYCYED-FDIASLCSHLED   67 (176)
Q Consensus        46 ~F~CPFC~e~-fDv~~L~~H~~e   67 (176)
                      .|.|+.|++. -....|..|...
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            3788999884 455677778654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	94.0
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.66
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	93.01
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	92.46
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.89
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	91.01
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	90.09
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	88.8
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	88.48
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	88.31
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	87.47
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	87.08
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	85.33
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	85.09
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	83.68
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	83.0
d2ct5a1	60	Zinc finger BED domain-containing protein 1 {Human	82.79
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	81.61

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.00  E-value=0.0099  Score=40.44  Aligned_cols=46  Identities=30%  Similarity=0.738  Sum_probs=31.0

Q ss_pred             ccCCCCCCCCCC-CCCcccCCCCCC--CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           31 RLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        31 ~~g~d~~~~ddd-~r~~F~CPFC~e--~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      .+.+||++-|+| ..-+|+|| ||.  .+....|-.+        .-.+.||-|+-.+
T Consensus         7 ev~leD~~~dee~~~~~ypCp-CGd~F~it~~dLe~g--------e~V~~C~sCSL~i   55 (70)
T d1wgea1           7 EVEIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLII   55 (70)
T ss_dssp             EEEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEE
T ss_pred             EEEeeeeeEeCCCCEEEeCCC-CCCeEEECHHHHhCC--------CeEEeCCCCceEE
Confidence            345666665444 34689999 998  6666777542        2356799999876

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.012  Score=39.01  Aligned_cols=44  Identities=25%  Similarity=0.548  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCCcccCCCCCC---CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           35 DDFEVEDDVRPDFPCPYCYE---DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        35 d~~~~ddd~r~~F~CPFC~e---~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      |+.+-+...++.|.||.|+.   .||+..|..       .....-.|-+|...+
T Consensus         3 e~~~rd~~~~~~y~Cp~C~~~ys~Lda~~L~d-------~~~~~F~C~~C~~el   49 (62)
T d1vd4a_           3 ETDERDSTNRASFKCPVCSSTFTDLEANQLFD-------PMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHHHEE-------TTTTEEBCSSSCCBC
T ss_pred             chhhhccccCCceECCCCCCCcchhhHHHhcC-------cCCCeEEecCCCCEE
Confidence            44344445589999999999   677777765       334567899998776

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.065  Score=32.71  Aligned_cols=47  Identities=19%  Similarity=0.441  Sum_probs=37.1

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCCCcceecCcccccc--hhhHHHHhhh
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~--s~d~l~HL~~   95 (176)
                      .|.|. ||+ =-....|..|.. .|.. .++-.|++|...-  ..+|..|+..
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~-~Ht~-ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMS-MHLG-LRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHH-HHSC-CCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CCCCC-CCCeECCHHHhHHHhh-cccc-ccCCcCCCcCCEecCHHHHHHHHhc
Confidence            59996 999 667789999975 6765 4688999998764  6788888753

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.46  E-value=0.019  Score=40.10  Aligned_cols=47  Identities=32%  Similarity=0.779  Sum_probs=31.7

Q ss_pred             cccCCCCCCCCCC-CCCcccCCCCCC--CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           30 DRLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        30 d~~g~d~~~~ddd-~r~~F~CPFC~e--~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      |.+.+||++-|+| ..-.|+|| ||.  .+....|-.+        .-.+.||-|+-++
T Consensus         5 dev~LeDm~~ded~~~~~ypCr-CGd~F~it~~dLe~g--------e~v~~C~sCSL~I   54 (82)
T d1ywsa1           5 DEIEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMI   54 (82)
T ss_dssp             CEEETTTSEEETTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEEETTTTEEE
T ss_pred             cEEEecceEEeCCCCEEEeccc-cCCeEEEcHHHHhCC--------CeEEeCCCCceEE
Confidence            4456777765444 35689999 998  5666666542        2345699999886

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.89  E-value=0.035  Score=35.60  Aligned_cols=24  Identities=33%  Similarity=0.876  Sum_probs=20.6

Q ss_pred             cceecCcccccc--hhhHHHHhhhhc
Q 030491           74 KVTVCPICSVKV--ARDMLSHITLQH   97 (176)
Q Consensus        74 k~vVCPICaa~~--s~d~l~HL~~rH   97 (176)
                      .++.||||-+.+  ++|+-+||-+.|
T Consensus        23 qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            357899998876  899999999888

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.01  E-value=0.076  Score=34.85  Aligned_cols=38  Identities=16%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             CCCCcccCCCCCC------------CCCHHHHHhhhhhhccCCCcceecCcccccc
Q 030491           42 DVRPDFPCPYCYE------------DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (176)
Q Consensus        42 d~r~~F~CPFC~e------------~fDv~~L~~H~~eeH~~e~k~vVCPICaa~~   85 (176)
                      |.+..|.||.|.+            .|+..-|..++...      ...||+|...+
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~------~~~cP~c~~~l   52 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV------GHFNPVTRSPL   52 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT------CSSCTTTCCCC
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcC------CccCCCccccc
Confidence            3456899999854            45566666666543      24799998765

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.09  E-value=0.12  Score=37.77  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=28.9

Q ss_pred             CCCCcccCCCCCC-CCCHHHHHhhhhhhccCCCcce
Q 030491           42 DVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVT   76 (176)
Q Consensus        42 d~r~~F~CPFC~e-~fDv~~L~~H~~eeH~~e~k~v   76 (176)
                      +..+..+|-||.+ --++..+..||.+.|.++-..+
T Consensus        11 ~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~   46 (121)
T d1wira_          11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSM   46 (121)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHH
T ss_pred             CCcccceecccCCccCCHHHHHHHHHHhhCCCHHHH
Confidence            3456778999999 6689999999999999976654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.80  E-value=0.14  Score=28.30  Aligned_cols=23  Identities=30%  Similarity=1.078  Sum_probs=13.1

Q ss_pred             ccCCCCCCCCCH-HHHHhhhhhhc
Q 030491           47 FPCPYCYEDFDI-ASLCSHLEDEH   69 (176)
Q Consensus        47 F~CPFC~e~fDv-~~L~~H~~eeH   69 (176)
                      |+||||.++|.. ..+..|+.--|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            677777776654 33455554433

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.15  Score=29.68  Aligned_cols=26  Identities=19%  Similarity=0.512  Sum_probs=20.8

Q ss_pred             cccCCCCCCCC-CHHHHHhhhhhhccC
Q 030491           46 DFPCPYCYEDF-DIASLCSHLEDEHSC   71 (176)
Q Consensus        46 ~F~CPFC~e~f-Dv~~L~~H~~eeH~~   71 (176)
                      -|.|++|++.| ....|..|+...|..
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CEeCCCCcccccchHHHHHHcccccCC
Confidence            69999999955 566788998888764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.14  Score=29.27  Aligned_cols=27  Identities=33%  Similarity=0.678  Sum_probs=23.7

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCC
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE   72 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e   72 (176)
                      -|.|+||.- .-|..-|-.|+...|.-|
T Consensus         2 py~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccccccccccccchhhhhhhhcccccC
Confidence            378999977 999999999999999765

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.47  E-value=0.25  Score=33.86  Aligned_cols=39  Identities=18%  Similarity=0.194  Sum_probs=25.0

Q ss_pred             CCCCCcccCCCCCCC-------------CCHHHHHhhhhhhccCCCcceecCcccccch
Q 030491           41 DDVRPDFPCPYCYED-------------FDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (176)
Q Consensus        41 dd~r~~F~CPFC~e~-------------fDv~~L~~H~~eeH~~e~k~vVCPICaa~~s   86 (176)
                      .|.+..|.||.|++=             |+...+..|+.       ++..||+|...++
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~-------~~~~~P~~~~~l~   68 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-------SDQTDPFNRSPLT   68 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT-------TSCBCTTTCSBCC
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHH-------hcCCccccccccc
Confidence            356789999999652             34444444443       2347999988763

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.08  E-value=0.29  Score=31.61  Aligned_cols=51  Identities=18%  Similarity=0.413  Sum_probs=30.1

Q ss_pred             CCCCcccCCCCCCC------------CCHHHHHhhhhhhccCCCcceecCcccccch----------hhHHHHhhhhcc
Q 030491           42 DVRPDFPCPYCYED------------FDIASLCSHLEDEHSCESKVTVCPICSVKVA----------RDMLSHITLQHG   98 (176)
Q Consensus        42 d~r~~F~CPFC~e~------------fDv~~L~~H~~eeH~~e~k~vVCPICaa~~s----------~d~l~HL~~rH~   98 (176)
                      |.+.+|.||.|.+-            |...-|..++.      .....||+|...++          ++++.....+||
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~------~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~   76 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD------AGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT------TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHH------HCCCCCCcccccCCcccccchHHHHHHHHHHHHHhC
Confidence            45668999999762            33444444333      23457999987642          355555555554

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=0.45  Score=27.06  Aligned_cols=27  Identities=22%  Similarity=0.354  Sum_probs=23.4

Q ss_pred             cccCCCCCC-CCCHHHHHhhhhhhccCC
Q 030491           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE   72 (176)
Q Consensus        46 ~F~CPFC~e-~fDv~~L~~H~~eeH~~e   72 (176)
                      .|+|+-||+ =-...+.--|+..+|..-
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~~   29 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNSL   29 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccCC
Confidence            699999999 667899999999999753

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.09  E-value=0.22  Score=28.04  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=17.3

Q ss_pred             eecCcccccc--hhhHHHHhhhhcc
Q 030491           76 TVCPICSVKV--ARDMLSHITLQHG   98 (176)
Q Consensus        76 vVCPICaa~~--s~d~l~HL~~rH~   98 (176)
                      --||-|+..+  .+|+-.||...|.
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccCCcchhheeehhhhhHHhhhccc
Confidence            3588888876  5688888887775

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=83.68  E-value=0.32  Score=27.07  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=14.5

Q ss_pred             cccCCCCCCCCCH-HHHHhhhh
Q 030491           46 DFPCPYCYEDFDI-ASLCSHLE   66 (176)
Q Consensus        46 ~F~CPFC~e~fDv-~~L~~H~~   66 (176)
                      -|.|++|++.|.. ..|..|..
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            3789999986654 45666654

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=0.51  Score=27.92  Aligned_cols=34  Identities=24%  Similarity=0.594  Sum_probs=24.6

Q ss_pred             cccCCCCCCCCC-HHHHHhhhhhhccCCCcceecCc
Q 030491           46 DFPCPYCYEDFD-IASLCSHLEDEHSCESKVTVCPI   80 (176)
Q Consensus        46 ~F~CPFC~e~fD-v~~L~~H~~eeH~~e~k~vVCPI   80 (176)
                      -|.|..||+.|. ...|..|++.-|..| ++-.|.|
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r~~Ht~e-kpy~C~i   39 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIKQVHTSE-RPHKCQV   39 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCCC-CCCCSSS
T ss_pred             CccCCCCCCCcCChHHhhccCcCccCCC-cCcCCcC
Confidence            588999999554 556888888888765 4556654

>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: BED zinc finger
domain: Zinc finger BED domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=0.22  Score=32.76  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=25.3

Q ss_pred             CcceecCcccccc-----hhhHHHHhhhhccchhh
Q 030491           73 SKVTVCPICSVKV-----ARDMLSHITLQHGHLFK  102 (176)
Q Consensus        73 ~k~vVCPICaa~~-----s~d~l~HL~~rH~~~~k  102 (176)
                      -..+||-+|...+     +.||..||..+|.-.|.
T Consensus        20 ~~~i~C~lC~k~i~~~GNTtNl~~HL~~rHp~ef~   54 (60)
T d2ct5a1          20 WKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFC   54 (60)
T ss_dssp             SSCCEETTTTEECCCCSSTHHHHHHHHHSCHHHHH
T ss_pred             ccchHHHHHHHHhcccCCcchHHHHHHhcCHHHHH
Confidence            4578999998886     67999999999987664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.61  E-value=0.59  Score=26.34  Aligned_cols=21  Identities=19%  Similarity=0.320  Sum_probs=17.7

Q ss_pred             ccCCCCCC-CCCHHHHHhhhhh
Q 030491           47 FPCPYCYE-DFDIASLCSHLED   67 (176)
Q Consensus        47 F~CPFC~e-~fDv~~L~~H~~e   67 (176)
                      |.||||+. =---+.|..|+..
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             ccccccCcccCCHHHHHHHHHH
Confidence            78999999 7778888888875