Citrus Sinensis ID: 030505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWAVAFTTSNSPGS
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccEEEEEEEEEEEEEcccEEEEcccccEEEEEEccccccccEEEEEccccccEEEEEcccccccccEEEEEcccccccccEEEEEEcccccccccEEEEEcccccccccccccEEEEEEcccccEEEEEccEEEEEEEEccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccHHcccccEEEEEEEEEEEEccccEEEEEccccEEEEEccccccccccEEEEcccccEEEEEEcccccccccEEEEEcccccccccEEEEEEEcccEEcccEEEEEEccccccccccccEEEEEccccccEEEEEccEEEEEEEccccEEccccccccc
Coil and Loop (DISEMBL)
mensgwdygvpiinivgenfcvPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKrvmrdpagiplltmrqksfkwrkewtvhpgessednndilfrveqpsplhiktklevflpnnniigkrapdfyvtgsftslsfkvyrgktvlCQVVVPWAVafttsnspgs
Flexible Loop (DISEMBL)
mensgwdygVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKrvmrdpagiplltmrqksfkwrkewtvhpgessednndiLFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWAVafttsnspgs
Low Complexity Region (SEG)
MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWAVAFTTSNSPGS
Disordered region (IsUnstruct)
****GWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVH*********DILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWAVAFT*******
Disordered Region (DISOPRED)
**********PIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNI*GKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWAVAFTTSNSPG*
Disordered Region (DISEMBL)
MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWAVAFTTSNSPGS
Disordered Region (DISPRO)
*****WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWAVAFT*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWAVAFTTSNSPGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9LYM3	204	Protein LURP-one-related	yes	no	0.903	0.779	0.459	8e-40
B3H5L1	197	Protein LURP-one-related	no	no	0.846	0.756	0.423	2e-29
Q9LZX1	217	Protein LURP-one-related	no	no	0.784	0.635	0.333	5e-19
Q9SF24	194	Protein LURP-one-related	no	no	0.784	0.711	0.338	6e-19
Q9ZQR8	207	Protein LURP1 OS=Arabidop	no	no	0.784	0.666	0.297	4e-14
Q9LQ36	224	Protein LURP-one-related	no	no	0.784	0.616	0.269	9e-12
Q9LSQ1	185	Protein LURP-one-related	no	no	0.772	0.735	0.304	2e-09

>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2

 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 107/161 (66%), Gaps = 2/161 (1%)

Query: 6   WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
           W  G P I++V + FC PY M++LVK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct: 9   WQVGDPAISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query: 66  RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
           RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct: 69  RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query: 126 -NNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWA 165
            NNN+      DF+ +G ++++SFKV++   ++  V   W 
Sbjct: 128 ENNNVKKTNTCDFHASGGYSNISFKVFKADALIAGVGFTWG 168

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|B3H5L1|LOR9_ARATH Protein LURP-one-related 9 OS=Arabidopsis thaliana GN=At3g10986 PE=3 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 7/156 (4%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
           ++++VGE FC PYT E++V++R + +    YDVFD+S NL+  VDG +W  ++KRV+RD 
Sbjct: 1   MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDA 60

Query: 72  AGIPLLTMRQKSF-KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP---NN 127
           AGIPLL+MR K     R  W V+ G+S+E +N +LF   +P+ L  KT L+V LP   ++
Sbjct: 61  AGIPLLSMRTKGLVPMRYNWEVYKGDSTESDN-LLFSAREPNLLSFKTSLDVTLPPDQSS 119

Query: 128 NIIGKRAPDFYVTGSFTSLSFKVYR--GKTVLCQVV 161
             I    PDF   G +   SFK++     T+L +VV
Sbjct: 120 TDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVV 155

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 85/141 (60%), Gaps = 3/141 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +C PY ++M + +++  +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct: 27  VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           P++T+R+K       W V  G S+ D  D+L+ V++ S L +KTKL+VFL +N    ++ 
Sbjct: 87  PVVTLREKMVSMHDRWQVFRGGST-DQRDLLYTVKRSSMLQLKTKLDVFLGHNK--DEKR 143

Query: 135 PDFYVTGSFTSLSFKVYRGKT 155
            DF V GS+   S  VY G++
Sbjct: 144 CDFRVKGSWLERSCVVYAGES 164

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 85/142 (59%), Gaps = 4/142 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           IV  NFC PY +E+ + +++  +++ ++ V D++GNLL +V   L+    KR++ D    
Sbjct: 3   IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDT 62

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHI-KTKLEVFLPNNNIIGKR 133
           P+LT+R+        W V+ G+S+ D +D+L+ +++ S + I K KL++FL +N     +
Sbjct: 63  PILTLRENKVSLHDRWLVYRGKST-DQSDLLYTLKRSSMIQIMKPKLDIFLAHNK--EMK 119

Query: 134 APDFYVTGSFTSLSFKVYRGKT 155
             DF+V GS+   S  VY GK+
Sbjct: 120 ICDFHVKGSWIDRSCVVYAGKS 141

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 3/141 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           IVG  +C P  + + + +++  +++ ++ +    G LL +V   L+    KR++ D +G 
Sbjct: 7   IVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGA 66

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
            +LT+R K       W V  G S+E+   +L+ V++ S + +  KLEVFL NN  + ++ 
Sbjct: 67  KVLTLRGKMMTMHDRWQVFRGGSTEEGA-LLYTVKRSSMIQLAPKLEVFLANN--VEEKI 123

Query: 135 PDFYVTGSFTSLSFKVYRGKT 155
            DF V G++   S  VY G +
Sbjct: 124 CDFKVKGAWLDDSCVVYAGDS 144

Involved in basal defense against virulent oomycetes. Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840 PE=2 SV=2

 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 78/141 (55%), Gaps = 3/141 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           IV   +C  + +++ + +++  +++ ++ + +  GNLL +V    +   +KR++ D  G 
Sbjct: 27  IVDPKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKDPFFSLHEKRILMDGFGT 86

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
            +LT++ K       W V  G S+E+  D+L+ V++ + + I TKL+VFL +N  I ++ 
Sbjct: 87  KVLTLKGKIMTMHDRWLVFRGGSTEE-VDLLYTVKRSNMVQITTKLDVFLADN--IEQKK 143

Query: 135 PDFYVTGSFTSLSFKVYRGKT 155
            D+ + G +   S  VY G +
Sbjct: 144 CDYRLEGVWLETSCFVYAGDS 164

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 25/161 (15%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +VG  F  P  +++     I G +     V D +GN + +V   L+    KR++ DP   
Sbjct: 15  LVGSEFVRPQPLDLT----ITGDT-----VKDATGNKVFKVKTPLFGLHNKRILVDPNDS 65

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNN------- 127
           P++TM+ K       W V+ G    D +D +F V++ S + +KT++EVFL +N       
Sbjct: 66  PIVTMKMKVTSKHDRWQVYRG---SDLDDKIFTVKRSSTVQLKTRVEVFLKHNQTRESSC 122

Query: 128 --NIIG---KRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVP 163
              I G   KRA   YV  S T +  +VY G   L   + P
Sbjct: 123 DFTIKGRFMKRACTIYVADS-TKIIAQVYEGHERLVATIYP 162

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
255559593	198	conserved hypothetical protein [Ricinus	0.886	0.787	0.531	3e-44
224098750	200	predicted protein [Populus trichocarpa]	0.897	0.79	0.487	7e-44
224112419	195	predicted protein [Populus trichocarpa]	0.852	0.769	0.549	3e-42
30694393	204	uncharacterized protein [Arabidopsis tha	0.903	0.779	0.459	4e-38
297816940	204	hypothetical protein ARALYDRAFT_486059 [	0.903	0.779	0.453	1e-37
7572916	208	putative protein [Arabidopsis thaliana]	0.886	0.75	0.468	1e-37
356554644	189	PREDICTED: protein LURP-one-related 14-l	0.835	0.777	0.450	8e-29
297833890	197	hypothetical protein ARALYDRAFT_317898 [	0.846	0.756	0.429	1e-28
186509973	197	LURP-one-like protein 9 [Arabidopsis tha	0.846	0.756	0.423	8e-28
356568182	216	PREDICTED: protein LURP-one-related 15-l	0.784	0.638	0.361	6e-20

>gi|255559593|ref|XP_002520816.1| conserved hypothetical protein [Ricinus communis] gi|223539947|gb|EEF41525.1| conserved hypothetical protein [Ricinus communis]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 116/160 (72%), Gaps = 4/160 (2%)

Query: 1   MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLW 60
           ME   W +GVP ++++G+ +C PY ME++VKK+I+ MSNA ++VFD+SGNLLLQVDG +W
Sbjct: 1   MEVPTWTFGVPSVSVIGDGYCFPYPMELIVKKKIKKMSNAQFEVFDLSGNLLLQVDGGVW 60

Query: 61  KFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKL 120
            F  KR++RDPAG P+LT+R K+     +W  H GE+ ++NN ILF V Q  PL IK  L
Sbjct: 61  SFNMKRIVRDPAGFPILTLRGKALTLWHKWKAHEGENKDENN-ILFSVRQSHPLQIKKDL 119

Query: 121 EVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQV 160
            VFL N     ++ PDF+VTGS+TSLSFKVY+G  +L +V
Sbjct: 120 HVFLAN---FKQKDPDFHVTGSYTSLSFKVYKGHRLLAEV 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098750|ref|XP_002311255.1| predicted protein [Populus trichocarpa] gi|222851075|gb|EEE88622.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 118/160 (73%), Gaps = 2/160 (1%)

Query: 1   MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLW 60
           M+   W YGVP I+++GE++C PY +E++VKK+I  +S++ + VFD+SGN LL+VDG +W
Sbjct: 1   MKVPEWAYGVPPISVIGESYCTPYPLELIVKKKINKLSSSQFQVFDLSGNFLLKVDGGVW 60

Query: 61  KFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKL 120
            F+ KRV+ DPAG P+LT+R K+  +R +W  H GES+ D ++ILF V+Q  PL IK ++
Sbjct: 61  NFKLKRVLLDPAGFPILTLRGKALAFRHKWKAHAGESTHDTSNILFSVKQSHPLQIKKQI 120

Query: 121 EVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQV 160
            +FL NN    K+ PD ++TG++TSLSFKVY G+ ++ +V
Sbjct: 121 NIFLANN--FKKKEPDIHITGAYTSLSFKVYEGRRLIAEV 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112419|ref|XP_002316183.1| predicted protein [Populus trichocarpa] gi|222865223|gb|EEF02354.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/153 (54%), Positives = 118/153 (77%), Gaps = 3/153 (1%)

Query: 8   YGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRV 67
           YGVP +++VGEN+C PY +E++VKK+I+ +SNA ++VFD+SGNLLLQVDG +W FQ KRV
Sbjct: 4   YGVPPVSVVGENYCAPYPLELIVKKKIKKLSNAQFEVFDLSGNLLLQVDGGVWNFQLKRV 63

Query: 68  MRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNN 127
           +RDPAG P+LT+R K      +W  H GES++D+N +LF V+Q  PL IK  + VFL NN
Sbjct: 64  LRDPAGFPILTIRGKVLTLWHKWKAHAGESTDDSN-VLFTVKQSHPLQIKKAINVFLTNN 122

Query: 128 NIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQV 160
           +   K+ PDF+++GS+TSLSFKVY G+ ++ +V
Sbjct: 123 S--KKKEPDFHISGSYTSLSFKVYEGRRLIAEV 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694393|ref|NP_191177.2| uncharacterized protein [Arabidopsis thaliana] gi|308197098|sp|Q9LYM3.2|LOR14_ARATH RecName: Full=Protein LURP-one-related 14 gi|332645969|gb|AEE79490.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 107/161 (66%), Gaps = 2/161 (1%)

Query: 6   WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
           W  G P I++V + FC PY M++LVK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct: 9   WQVGDPAISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query: 66  RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
           RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct: 69  RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query: 126 -NNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWA 165
            NNN+      DF+ +G ++++SFKV++   ++  V   W 
Sbjct: 128 ENNNVKKTNTCDFHASGGYSNISFKVFKADALIAGVGFTWG 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816940|ref|XP_002876353.1| hypothetical protein ARALYDRAFT_486059 [Arabidopsis lyrata subsp. lyrata] gi|297322191|gb|EFH52612.1| hypothetical protein ARALYDRAFT_486059 [Arabidopsis lyrata subsp. lyrata]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 107/161 (66%), Gaps = 2/161 (1%)

Query: 6   WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
           W  G P I++V + FC PY M+++VK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct: 9   WQVGDPAISVVSDQFCNPYPMDLVVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query: 66  RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
           RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct: 69  RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query: 126 -NNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPWA 165
            NNN+      DF+ +G ++++SFKV++   ++  V   W 
Sbjct: 128 ENNNVKKSNTCDFHASGGYSNISFKVFKSDALIAGVGFTWG 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7572916|emb|CAB87417.1| putative protein [Arabidopsis thaliana]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 107/158 (67%), Gaps = 2/158 (1%)

Query: 6   WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
           W  G P I++V + FC PY M++LVK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct: 9   WQVGDPAISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query: 66  RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
           RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct: 69  RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query: 126 -NNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVVV 162
            NNN+      DF+ +G ++++SFKV++   ++  V V
Sbjct: 128 ENNNVKKTNTCDFHASGGYSNISFKVFKADALIAGVGV 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554644|ref|XP_003545654.1| PREDICTED: protein LURP-one-related 14-like [Glycine max]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 100/151 (66%), Gaps = 4/151 (2%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGM-SNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRD 70
           +I++V ++FCV Y  E+ VKK  +G   N  Y+V D++G+LLLQVDGS    +KKRVMRD
Sbjct: 1   MISVVEDSFCVTYPTEITVKKNYRGFFLNQRYEVLDVNGDLLLQVDGSSLDVRKKRVMRD 60

Query: 71  PAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNII 130
            AG P+LTMR+K    R  W VH G+SSE+  D++F V++  PL +K +L+VF+  N  I
Sbjct: 61  AAGSPILTMREKLITLRHRWMVHRGKSSEE-KDLIFGVQRSHPLDMKPRLDVFMATN--I 117

Query: 131 GKRAPDFYVTGSFTSLSFKVYRGKTVLCQVV 161
            +    F + GS +  S KVY+G T++ +V+
Sbjct: 118 NEDISSFQLVGSHSDKSCKVYKGDTMIAEVI 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833890|ref|XP_002884827.1| hypothetical protein ARALYDRAFT_317898 [Arabidopsis lyrata subsp. lyrata] gi|297330667|gb|EFH61086.1| hypothetical protein ARALYDRAFT_317898 [Arabidopsis lyrata subsp. lyrata]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 7/156 (4%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
           ++++VGE FC PYT E++V++R + +   HYDVFD+S NL+  V+G +W  ++KRV+RD 
Sbjct: 1   MVSVVGEMFCNPYTTELVVRRRRESLKREHYDVFDLSDNLIFTVEGGIWNIRRKRVLRDA 60

Query: 72  AGIPLLTMRQKSF-KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP---NN 127
            GIPLL+MR K     R +W V+ GES+E + D+LF   +P+ L  K  L+V LP   N+
Sbjct: 61  TGIPLLSMRTKGLVTMRYKWEVYKGESTE-SEDLLFSAREPNLLSFKPSLDVTLPPPQNS 119

Query: 128 NIIGKRAPDFYVTGSFTSLSFKVYR--GKTVLCQVV 161
             I   APDF   G +   SFK++     T+L +VV
Sbjct: 120 TDISSIAPDFQTFGRYIGSSFKLFEPIHNTLLAEVV 155

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186509973|ref|NP_001118614.1| LURP-one-like protein 9 [Arabidopsis thaliana] gi|308197095|sp|B3H5L1.1|LOR9_ARATH RecName: Full=Protein LURP-one-related 9 gi|332641468|gb|AEE74989.1| LURP-one-like protein 9 [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 7/156 (4%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
           ++++VGE FC PYT E++V++R + +    YDVFD+S NL+  VDG +W  ++KRV+RD 
Sbjct: 1   MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDA 60

Query: 72  AGIPLLTMRQKSF-KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP---NN 127
           AGIPLL+MR K     R  W V+ G+S+E +N +LF   +P+ L  KT L+V LP   ++
Sbjct: 61  AGIPLLSMRTKGLVPMRYNWEVYKGDSTESDN-LLFSAREPNLLSFKTSLDVTLPPDQSS 119

Query: 128 NIIGKRAPDFYVTGSFTSLSFKVYR--GKTVLCQVV 161
             I    PDF   G +   SFK++     T+L +VV
Sbjct: 120 TDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVV 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568182|ref|XP_003552292.1| PREDICTED: protein LURP-one-related 15-like [Glycine max]

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 86/141 (60%), Gaps = 3/141 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           ++G  FC PY +++ V K++  +S+ ++ V D++GN++ +V GSL   + +R++ D AG 
Sbjct: 26  VIGPQFCAPYPLDLAVVKKVMTLSDGNFVVTDVNGNVVFKVKGSLMTLRDRRILVDAAGN 85

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           PL+T+R+K       W    GES+E   D++F +++ S +  KTKL+VFL NN    +  
Sbjct: 86  PLVTLRRKIMTAHDRWQAFRGESTE-AKDLIFTLKRSSLIQFKTKLDVFLANNT--KEDV 142

Query: 135 PDFYVTGSFTSLSFKVYRGKT 155
            DF V GS+   S  VY G++
Sbjct: 143 CDFKVKGSWLERSCVVYAGES 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2078506	204	AT3G56180 "AT3G56180" [Arabido	0.897	0.774	0.462	1.3e-38
TAIR|locus:4515103053	197	AT3G10986 "AT3G10986" [Arabido	0.846	0.756	0.423	2.1e-29
TAIR|locus:2181082	217	AT5G01750 "AT5G01750" [Arabido	0.784	0.635	0.347	5.7e-20
TAIR|locus:2081481	194	AT3G11740 "AT3G11740" [Arabido	0.784	0.711	0.338	7.2e-20
TAIR|locus:2055250	207	LURP1 "AT2G14560" [Arabidopsis	0.772	0.657	0.302	1.1e-14
TAIR|locus:2086062	185	AT3G16900 "AT3G16900" [Arabido	0.590	0.562	0.314	3.2e-10

TAIR|locus:2078506 AT3G56180 "AT3G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 74/160 (46%), Positives = 107/160 (66%)

Query:     6 WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
             W  G P I++V + FC PY M++LVK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct:     9 WQVGDPAISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query:    66 RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
             RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct:    69 RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query:   126 NNNIIGK-RAPDFYVTGSFTSLSFKVYRGKTVLCQVVVPW 164
              NN + K    DF+ +G ++++SFKV++   ++  V   W
Sbjct:   128 ENNNVKKTNTCDFHASGGYSNISFKVFKADALIAGVGFTW 167

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103053 AT3G10986 "AT3G10986" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 66/156 (42%), Positives = 98/156 (62%)

Query:    12 IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
             ++++VGE FC PYT E++V++R + +    YDVFD+S NL+  VDG +W  ++KRV+RD 
Sbjct:     1 MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDA 60

Query:    72 AGIPLLTMRQKSF-KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP---NN 127
             AGIPLL+MR K     R  W V+ G+S+E +N +LF   +P+ L  KT L+V LP   ++
Sbjct:    61 AGIPLLSMRTKGLVPMRYNWEVYKGDSTESDN-LLFSAREPNLLSFKTSLDVTLPPDQSS 119

Query:   128 NIIGKRAPDFYVTGSFTSLSFKVYRG--KTVLCQVV 161
               I    PDF   G +   SFK++     T+L +VV
Sbjct:   120 TDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVV 155

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181082 AT5G01750 "AT5G01750" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 49/141 (34%), Positives = 85/141 (60%)

Query:    15 IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
             +V   +C PY ++M + +++  +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct:    27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query:    75 PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
             P++T+R+K       W V  G S+ D  D+L+ V++ S L +KTKL+VFL +N    KR 
Sbjct:    87 PVVTLREKMVSMHDRWQVFRGGST-DQRDLLYTVKRSSMLQLKTKLDVFLGHNKD-EKRC 144

Query:   135 PDFYVTGSFTSLSFKVYRGKT 155
              DF V GS+   S  VY G++
Sbjct:   145 -DFRVKGSWLERSCVVYAGES 164

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2081481 AT3G11740 "AT3G11740" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 48/142 (33%), Positives = 86/142 (60%)

Query:    15 IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
             IV  NFC PY +E+ + +++  +++ ++ V D++GNLL +V   L+    KR++ D    
Sbjct:     3 IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDT 62

Query:    75 PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHI-KTKLEVFLPNNNIIGKR 133
             P+LT+R+        W V+ G+S+ D +D+L+ +++ S + I K KL++FL +N  +  +
Sbjct:    63 PILTLRENKVSLHDRWLVYRGKST-DQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEM--K 119

Query:   134 APDFYVTGSFTSLSFKVYRGKT 155
               DF+V GS+   S  VY GK+
Sbjct:   120 ICDFHVKGSWIDRSCVVYAGKS 141

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055250 LURP1 "AT2G14560" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 42/139 (30%), Positives = 75/139 (53%)

Query:    15 IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
             IVG  +C P  + + + +++  +++ ++ +    G LL +V   L+    KR++ D +G 
Sbjct:     7 IVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGA 66

Query:    75 PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
              +LT+R K       W V  G S+E+   +L+ V++ S + +  KLEVFL NN  + ++ 
Sbjct:    67 KVLTLRGKMMTMHDRWQVFRGGSTEEGA-LLYTVKRSSMIQLAPKLEVFLANN--VEEKI 123

Query:   135 PDFYVTGSFTSLSFKVYRG 153
              DF V G++   S  VY G
Sbjct:   124 CDFKVKGAWLDDSCVVYAG 142

GO:0003674 "molecular_function" evidence=ND

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

TAIR|locus:2086062 AT3G16900 "AT3G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 34/108 (31%), Positives = 58/108 (53%)

Query:    44 VFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNND 103
             V D +GN + +V   L+    KR++ DP   P++TM+ K       W V+ G    D +D
Sbjct:    35 VKDATGNKVFKVKTPLFGLHNKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGS---DLDD 91

Query:   104 ILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVY 151
              +F V++ S + +KT++EVFL +N    + + DF + G F   +  +Y
Sbjct:    92 KIFTVKRSSTVQLKTRVEVFLKHNQT-RESSCDFTIKGRFMKRACTIY 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       176   0.00081  109 3  11 22  0.41    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.02u 0.16s 16.18t   Elapsed:  00:00:01
  Total cpu time:  16.03u 0.16s 16.19t   Elapsed:  00:00:01
  Start:  Sat May 11 03:45:49 2013   End:  Sat May 11 03:45:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VIII000651 hypothetical protein (200 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam04525	185	pfam04525, Tub_2, Tubby C 2	3e-27

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score =  100 bits (252), Expect = 3e-27
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +  P   ++ V ++    +   + V+D +GNL+ +VDG  +    +RV+ D +G 
Sbjct: 3   VVSSEYLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVDGYAFGLSDERVLMDSSGN 62

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           PLLT+R+K       W V+ GE +E   D LF V + S + +KT   VF   N+ +    
Sbjct: 63  PLLTIRRKKLSLHDRWEVYRGEGTEG-KDPLFTVRRSSIVQLKTSSSVFSKRNSNVIVDD 121

Query: 135 P---DFYVTGSFTSLSFKVY--RGKTV 156
               DF + GSF   S K+Y    K +
Sbjct: 122 EKNCDFDIKGSFLDRSCKIYDDSDKLI 148

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	99.97
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	99.25
COG4894	159	Uncharacterized conserved protein [Function unknow	98.79
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	98.4
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	97.1
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	95.2

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=1.2e-37  Score=244.53  Aligned_cols=161  Identities=32%  Similarity=0.626  Sum_probs=97.4

Q ss_pred             eEEcccccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEc-cCCCCCCeEEEECCCCCeEEEEEecccccccEEEE
Q 030505           14 NIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDG-SLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTV   92 (176)
Q Consensus        14 ~vv~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g-~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i   92 (176)
                      +||+++||++++++|+||+|.+++++++|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.++++++|++
T Consensus         2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i   81 (187)
T PF04525_consen    2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI   81 (187)
T ss_dssp             -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred             cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence            57899999999999999999988877799999999999999999 89999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCcc---CCCCCCcEEEEeeeCCCceEEE-ECCEEEEEEE-------
Q 030505           93 HPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNI---IGKRAPDFYVTGSFTSLSFKVY-RGKTVLCQVV-------  161 (176)
Q Consensus        93 ~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~---~~~~~~~~~i~G~~~~~~f~I~-~~~~~VA~i~-------  161 (176)
                      |++++.+. .+++|+||+++....+.++.+|++....   ..+.+++|+|+|||++++|+|+ .+|++||+|+       
T Consensus        82 ~~~~~~~~-~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~rk~~~k~  160 (187)
T PF04525_consen   82 YRGGGSEG-KKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISRKYSSKK  160 (187)
T ss_dssp             EETT---G-GGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE------
T ss_pred             EECCCCcc-CceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEecccceee
Confidence            99998544 5689999998777788888888774321   1234479999999999999999 5599999997       


Q ss_pred             -ecccceEEEeecCC
Q 030505          162 -VPWAVAFTTSNSPG  175 (176)
Q Consensus       162 -~~~~dty~~~~~~~  175 (176)
                       +.|+|+|.+.+.||
T Consensus       161 ~~~~~dty~l~V~pg  175 (187)
T PF04525_consen  161 WFSGRDTYTLTVAPG  175 (187)
T ss_dssp             ----B-SEEEEE-TT
T ss_pred             EEecCcEEEEEEcCC
Confidence             99999999999998

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=6.2e-32  Score=199.98  Aligned_cols=134  Identities=17%  Similarity=0.399  Sum_probs=119.6

Q ss_pred             ceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEecccccccEEEEEeCCCCCCCCCe
Q 030505           25 TMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDI  104 (176)
Q Consensus        25 ~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~~~~~~  104 (176)
                      |.+|.|+||++++++ +|.|+|.+|+.+|+|+|+.|++++.++|.|++|.+|.+|++|+++++|+|+|.++++      .
T Consensus         5 ~~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g------~   77 (159)
T COG4894           5 MITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG------T   77 (159)
T ss_pred             hHhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCC------C
Confidence            678999999999999 999999999999999999999999999999999999999999999999999999997      3


Q ss_pred             EEEEEcCCCcccccEEEEEccCCccCCCCCCcEEEEeeeCCCceEEEECCEEEEEEE---ecccceEEEeecCCC
Q 030505          105 LFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVV---VPWAVAFTTSNSPGS  176 (176)
Q Consensus       105 l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~i~G~~~~~~f~I~~~~~~VA~i~---~~~~dty~~~~~~~~  176 (176)
                      ++.++|        +++++.++..+   +.++|+++||+|+.+|++++|+.++|+|+   ++|+|||+|.++|+.
T Consensus        78 ~~~vrK--------K~tf~Rdk~e~---d~~~~eihGNi~d~efkl~dg~~~~aeVsKkwf~~rdTY~l~vapde  141 (159)
T COG4894          78 VCEVRK--------KVTFSRDKFEI---DGLNWEIHGNIWDDEFKLTDGENVRAEVSKKWFSWRDTYHLQVAPDE  141 (159)
T ss_pred             EEEEEE--------EEEEEeeeEEE---cCCCeEEecceeceEEEEecCCceehhheeeeEeccceEEEEEcCch
Confidence            666665        34444444433   33689999999999999999999999999   999999999999973

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=99.25  E-value=8.2e-10  Score=88.49  Aligned_cols=138  Identities=18%  Similarity=0.261  Sum_probs=104.1

Q ss_pred             ceEEEEEEEeeee-------cCCceEEEcCCCCEEEEEEccCC---------CCCCeEEEECCCCCeEEEEEeccccc--
Q 030505           25 TMEMLVKKRIQGM-------SNAHYDVFDISGNLLLQVDGSLW---------KFQKKRVMRDPAGIPLLTMRQKSFKW--   86 (176)
Q Consensus        25 ~~~l~vkqk~~s~-------~~~~f~V~D~~G~~v~~V~g~~~---------s~~~~~~l~D~~G~~L~~I~~k~~s~--   86 (176)
                      .-.++|+|+.-.+       ..+.|.|+|.+|+.+|.+...--         ...-+++|+|..|+++++|+|..--.  
T Consensus        21 ~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C  100 (221)
T PF03803_consen   21 LDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSC  100 (221)
T ss_pred             CCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceec
Confidence            4577888876432       35699999999999999976621         12336799999999999999985422  


Q ss_pred             ----ccEEEEEeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcEEEEee------eCCCceEEEEC-CE
Q 030505           87 ----RKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGS------FTSLSFKVYRG-KT  155 (176)
Q Consensus        87 ----~~~~~i~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~i~G~------~~~~~f~I~~~-~~  155 (176)
                          ..+.+|+.+.     ++++++|++ .+...+.+++|+.+++.      .-+.|+|.      +.+++|.|++. |+
T Consensus       101 ~~~~~~~~~V~~p~-----g~~iG~I~q-~~~~~~~~f~I~d~~~~------~~~~I~gp~~~~~~~~~~~F~I~~~~~~  168 (221)
T PF03803_consen  101 CPCCLQEMEVESPP-----GNLIGSIRQ-PFSCCRPNFDIFDANGN------PIFTIKGPCCCCSCCCDWEFEIKDPNGQ  168 (221)
T ss_pred             ccccceeEEEecCC-----CcEEEEEEE-cCcccceEEEEEECCCc------eEEEEeCCcceeccccceeeeeecccCc
Confidence                3567776666     589999998 46667889999977753      35777776      56789999995 99


Q ss_pred             EEEEEEecc----------cceEEEeecC
Q 030505          156 VLCQVVVPW----------AVAFTTSNSP  174 (176)
Q Consensus       156 ~VA~i~~~~----------~dty~~~~~~  174 (176)
                      .||+|+..|          +|.|.++..|
T Consensus       169 ~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~  197 (221)
T PF03803_consen  169 EVGSITKKWSGFCRELFTDADNFVIEFPP  197 (221)
T ss_pred             EEEEEEEecCCcchhhccccceEEEEcCC
Confidence            999999333          5788888755

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=1.9e-08  Score=75.16  Aligned_cols=74  Identities=15%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             ccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEecccccccEEEEEeC
Q 030505           20 FCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPG   95 (176)
Q Consensus        20 ~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~   95 (176)
                      |-......++|+.+.+++.+ .|+|+|+.|..++.++.+++++.+++.|.|.+|+ ++.+++|...++++|++...
T Consensus        24 ~d~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d~~   97 (159)
T COG4894          24 YDRDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEIDGL   97 (159)
T ss_pred             ECCCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEcCC
Confidence            44556789999999999999 8999999999999999999999999999999999 88888888777999988653

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=98.40  E-value=2.5e-06  Score=66.79  Aligned_cols=73  Identities=16%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             CCcceEEEEEE-EeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCC----eEEEEEec-ccccccEEEEEeC
Q 030505           22 VPYTMEMLVKK-RIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI----PLLTMRQK-SFKWRKEWTVHPG   95 (176)
Q Consensus        22 ~~~~~~l~vkq-k~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~----~L~~I~~k-~~s~~~~~~i~~~   95 (176)
                      .+....|+++. +.++++. ...|+|++|+++++++.+.++++++..++++++.    ++++|+++ .+..++...+|.+
T Consensus        35 ~~G~~vf~V~g~~~~s~~~-~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~  113 (187)
T PF04525_consen   35 ENGNVVFRVDGGKFFSIGK-KRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLP  113 (187)
T ss_dssp             TTS-EEEEEE--SCTTBTT-EEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE----------EEEEET
T ss_pred             CCCCEEEEEEEecccCCCC-EEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEe
Confidence            45678999999 8899999 9999999999999999999999999999999998    49999999 3344555566654

; PDB: 1ZXU_A 2Q4M_A.

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=97.10  E-value=0.005  Score=49.14  Aligned_cols=65  Identities=15%  Similarity=0.311  Sum_probs=53.9

Q ss_pred             eEEEcCCCCEEEEEEccCCC------CCCeEEEECCCCCeEEEEEecccccccEEEEEeCCCCCCCCCeEEEEEcC
Q 030505           42 YDVFDISGNLLLQVDGSLWK------FQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQP  111 (176)
Q Consensus        42 f~V~D~~G~~v~~V~g~~~s------~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~~~~~~l~tv~~~  111 (176)
                      ..|+|..|+.|++++...-=      ...+..|.++.|++|++|+++...+.++|+|+++++     +++++|+.+
T Consensus        78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~-----~~~~~I~gp  148 (221)
T PF03803_consen   78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANG-----NPIFTIKGP  148 (221)
T ss_pred             EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCC-----ceEEEEeCC
Confidence            36799999999999987321      236788889999999999998767899999999984     688999875

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=95.20  E-value=1.1  Score=37.72  Aligned_cols=122  Identities=16%  Similarity=0.113  Sum_probs=77.8

Q ss_pred             cCCceEEEcCCCCEEEEEEccC---------CCCCCeEEEECCCCCeEEEEEecccccc--------cEEEEEeCCCCCC
Q 030505           38 SNAHYDVFDISGNLLLQVDGSL---------WKFQKKRVMRDPAGIPLLTMRQKSFKWR--------KEWTVHPGESSED  100 (176)
Q Consensus        38 ~~~~f~V~D~~G~~v~~V~g~~---------~s~~~~~~l~D~~G~~L~~I~~k~~s~~--------~~~~i~~~~~~~~  100 (176)
                      +.+.|.|.|.+|+.+|.+-..-         -...-..+|+|.-|+++++++|...-..        ...++..+.    
T Consensus        97 t~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~----  172 (292)
T KOG0621|consen   97 TANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPP----  172 (292)
T ss_pred             cCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCC----
Confidence            5669999999999999665542         1224478999999999999999864322        334555544    


Q ss_pred             CCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcEEEEee-------eCCCceEEEE-C-CEEEEEEE----------
Q 030505          101 NNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGS-------FTSLSFKVYR-G-KTVLCQVV----------  161 (176)
Q Consensus       101 ~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~i~G~-------~~~~~f~I~~-~-~~~VA~i~----------  161 (176)
                       .-++.+|.+ .+.....+++|...+..      ..+.|+|-       +-+..|.|.. + ++.|++|+          
T Consensus       173 -~~~lG~v~q-~~~~~~~~f~i~~~~~~------~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~  244 (292)
T KOG0621|consen  173 -MGLLGKVLQ-TWGCVNPNFHLWDRDGN------LVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREA  244 (292)
T ss_pred             -CceEEEEEE-eeccccceEEEEcccce------eEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhh
Confidence             347777766 34334556666543221      22344443       3334444444 3 89999999          


Q ss_pred             ecccceEEEe
Q 030505          162 VPWAVAFTTS  171 (176)
Q Consensus       162 ~~~~dty~~~  171 (176)
                      ++-.|+|.|.
T Consensus       245 fTDad~f~v~  254 (292)
T KOG0621|consen  245 FTDADTFVVH  254 (292)
T ss_pred             eeccceeeEe
Confidence            5666777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
1zxu_A	217	X-Ray Structure Of Protein From Arabidopsis Thalian		3e-19

>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 Length = 217

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +C PY ++  + ++   +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct: 27  VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86
Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           P++T+R+K       W V  G S+ D  D+L+ V++ S L +KTKL+VFL +N    ++ 
Sbjct: 87  PVVTLREKXVSXHDRWQVFRGGST-DQRDLLYTVKRSSXLQLKTKLDVFLGHNK--DEKR 143
Query: 135 PDFYVTGSFTSLSFKVYRGKT 155
            DF V GS+   S  VY G++
Sbjct: 144 CDFRVKGSWLERSCVVYAGES 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	7e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  110 bits (276), Expect = 7e-31
 Identities = 47/141 (33%), Positives = 84/141 (59%), Gaps = 3/141 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +C PY ++M + +++  +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct: 27  VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           P++T+R+K       W V  G  S D  D+L+ V++ S L +KTKL+VFL +N    ++ 
Sbjct: 87  PVVTLREKMVSMHDRWQVFRGG-STDQRDLLYTVKRSSMLQLKTKLDVFLGHNK--DEKR 143

Query: 135 PDFYVTGSFTSLSFKVYRGKT 155
            DF V GS+   S  VY G++
Sbjct: 144 CDFRVKGSWLERSCVVYAGES 164

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 60/193 (31%)

Query: 18  ENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKF--QKKRVMRDPAGIP 75
           +NF      +M   K I  +S    D   +S + +       W    +++ +++      
Sbjct: 31  DNFDCKDVQDMP--KSI--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 76  LLTMRQKSFKWRKE-WTVHPGESS------EDNNDILFRVEQP-SPLH---------IKT 118
           L    + ++K+          + S       +  D L+   Q  +  +         ++ 
Sbjct: 87  L----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 119 KLEVFLPNNNII--GKRAPDFYVTGSFTSLSFKVYRGKTVLCQVV-------------VP 163
            L    P  N++  G       V GS          GKT +   V             + 
Sbjct: 143 ALLELRPAKNVLIDG-------VLGS----------GKTWVALDVCLSYKVQCKMDFKIF 185

Query: 164 WAVAFTTSNSPGS 176
           W +     NSP +
Sbjct: 186 W-LNLKNCNSPET 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	98.41

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=1.8e-36  Score=241.71  Aligned_cols=169  Identities=30%  Similarity=0.582  Sum_probs=127.1

Q ss_pred             CCCCCCCCeeeEEcccccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEecc
Q 030505            4 SGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKS   83 (176)
Q Consensus         4 ~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~   83 (176)
                      |.+.+.++|++||+++||++++++|+||||++++++++|+|+|++|+++|+|+++.++++.+++|+|++|++|++|++|.
T Consensus        16 ~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~   95 (217)
T 1zxu_A           16 SGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKM   95 (217)
T ss_dssp             --------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC--
T ss_pred             CCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEccc
Confidence            44556667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccEEEEEeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcEEEEeeeCCCceEEEEC--CEEEEEEE
Q 030505           84 FKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRG--KTVLCQVV  161 (176)
Q Consensus        84 ~s~~~~~~i~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~i~G~~~~~~f~I~~~--~~~VA~i~  161 (176)
                      ++++++|+++++++.+. ++++|+||+++...++.+++|+..+..  ++..++|+|+|+|++++|+|+++  |++||+|+
T Consensus        96 ~~~~~~~~v~~~~~~~~-~~~i~~vrk~~~~~~~~~~~V~~~~~~--~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~  172 (217)
T 1zxu_A           96 VSMHDRWQVFRGGSTDQ-RDLLYTVKRSSMLQLKTKLDVFLGHNK--DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMH  172 (217)
T ss_dssp             ----CEEEEEETTCCCG-GGEEEEEEC-------CCEEEEETTCC--C-CCCSEEEESCTTTTCCEEEETTTCCEEEEEE
T ss_pred             cccCcEEEEEcCCCCCC-CcEEEEEEEeccccCCCeEEEEECCCC--CCCceEEEEEEeEeCCEEEEEECCCCEEEEEEE
Confidence            99999999999886432 468999999753347888999987643  22236899999999999999999  79999999


Q ss_pred             --eccc------ceEEEeecCC
Q 030505          162 --VPWA------VAFTTSNSPG  175 (176)
Q Consensus       162 --~~~~------dty~~~~~~~  175 (176)
                        ++++      |+|.+.+.||
T Consensus       173 kk~~~~~~~~~~D~y~l~V~p~  194 (217)
T 1zxu_A          173 RKHTVQSVFLGKDNFSVTVYPN  194 (217)
T ss_dssp             EC--------CBCSEEEEECTT
T ss_pred             eeeeccccccCCcEEEEEECCC
Confidence              5555      9999999997

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=98.41  E-value=1.3e-06  Score=68.87  Aligned_cols=99  Identities=16%  Similarity=0.250  Sum_probs=68.1

Q ss_pred             CCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCC----eEEEEEecc-cccccEEEEEeCC
Q 030505           22 VPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI----PLLTMRQKS-FKWRKEWTVHPGE   96 (176)
Q Consensus        22 ~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~----~L~~I~~k~-~s~~~~~~i~~~~   96 (176)
                      ......|+++.+.+++++ .+.|+|.+|+++++++.+.++++.++.++++++.    +|++|+++. +++++.|+|+.++
T Consensus        59 ~~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~  137 (217)
T 1zxu_A           59 VNGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGH  137 (217)
T ss_dssp             TTSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETT
T ss_pred             CCCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECC
Confidence            447789999999888888 9999999999999999999999999999998765    799999983 4589999999976


Q ss_pred             CCCCCCCeEEEEEcCCCcccccEEEEEcc
Q 030505           97 SSEDNNDILFRVEQPSPLHIKTKLEVFLP  125 (176)
Q Consensus        97 ~~~~~~~~l~tv~~~~~~~~k~~~~v~~~  125 (176)
                      .+.. +...++|+-. +  ....++|+..
T Consensus       138 ~~~~-~~~~~~I~G~-~--~~~~f~I~~~  162 (217)
T 1zxu_A          138 NKDE-KRCDFRVKGS-W--LERSCVVYAG  162 (217)
T ss_dssp             CCC--CCCSEEEESC-T--TTTCCEEEET
T ss_pred             CCCC-CceEEEEEEe-E--eCCEEEEEEC
Confidence            4321 3456677642 2  2445666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	7e-33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	98.22