Citrus Sinensis ID: 030521

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
MAEESSSSCSAQATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAFEGVDPDDDDV
ccccccccccccccccEEEEcccccEEEEcHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHccccccccccccccc
cccHHHHHHHcccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccc
maeesssscsaqaTKKISLKTadghlfeveepvAMEFEIVKSffdenddasedtvvplpnvsaapLSYIIEFCRAHVEfrkkrspkqEVKTFNEefgksksndELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFgiendftpeEEEAARKEYEWAfegvdpddddv
maeesssscsaqatkkislktADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFrkkrspkqevktfneefgksksndelKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFgiendftpeeEEAARKEYEwafegvdpddddv
MAEEsssscsAQATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPeeeeaarkeyewaFEGVDPDDDDV
**********************DGHLFEVEEPVAMEFEIVKSFFDEN*****DTVVPLPNVSAAPLSYIIEFCRAHVEF**************************KEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDF*************W************
******************LKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAF**********
*************TKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFR********VKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAFEGVDPDDDDV
*************TKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAFEGV*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEESSSSCSAQATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAFEGVDPDDDDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query176 2.2.26 [Sep-21-2011]
O81057149 SKP1-like protein 14 OS=A yes no 0.840 0.993 0.458 2e-29
Q9LSX8152 SKP1-like protein 10 OS=A no no 0.857 0.993 0.425 2e-29
Q9LSX9153 SKP1-like protein 9 OS=Ar no no 0.863 0.993 0.438 5e-29
Q9FHW7171 SKP1-like protein 1B OS=A no no 0.846 0.871 0.432 2e-26
O49484152 SKP1-like protein 11 OS=A no no 0.857 0.993 0.425 3e-26
O81055170 SKP1-like protein 16 OS=A no no 0.880 0.911 0.377 4e-26
Q9LNT9163 SKP1-like protein 4 OS=Ar no no 0.835 0.901 0.383 7e-26
Q39255160 SKP1-like protein 1A OS=A no no 0.818 0.9 0.429 2e-25
Q9SL93163 SKP1-like protein 3 OS=Ar no no 0.869 0.938 0.385 5e-25
Q8NK13171 E3 ubiquitin ligase compl N/A no 0.846 0.871 0.401 1e-24
>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1 Back     alignment and function desciption
 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 100/155 (64%), Gaps = 7/155 (4%)

Query: 13  ATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEF 72
           ++ KI L ++DG  FEVEE VA + +IV+   +++   +E   VPL NV+   LS ++E+
Sbjct: 2   SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTE---VPLQNVTGKILSIVVEY 58

Query: 73  CRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRI 132
           C+ HV          E KT++EEF K      + +++L ANYLNIK +LD   +TVA+RI
Sbjct: 59  CKKHV----VDEESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRI 114

Query: 133 KNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAFE 167
           K+K+ E +R+ F IENDFTPEEE A RKE  WAFE
Sbjct: 115 KDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1 Back     alignment and function description
>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1 Back     alignment and function description
>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1 Back     alignment and function description
>sp|O81055|ASK16_ARATH SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1 Back     alignment and function description
>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1 Back     alignment and function description
>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1 Back     alignment and function description
>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1 Back     alignment and function description
>sp|Q8NK13|SKP1_NEUCR E3 ubiquitin ligase complex SCF subunit scon-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=scon-3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query176
338227616180 SKP1 [Hevea brasiliensis] 0.948 0.927 0.556 5e-49
118482935184 unknown [Populus trichocarpa] 0.909 0.869 0.595 2e-45
255544596173 skp1, putative [Ricinus communis] gi|223 0.909 0.924 0.540 1e-41
224081401151 predicted protein [Populus trichocarpa] 0.857 1.0 0.590 2e-41
386688462177 SFB-interacting Skp1-like protein 1 [Pru 0.965 0.960 0.494 3e-40
451320833190 SLF-interacting Skp1-like protein 1 [Pyr 0.960 0.889 0.471 2e-39
451320831201 SLF-interacting Skp1-like protein 2 [Pyr 0.886 0.776 0.487 4e-38
227184175158 SKP1-like protein [Citrus maxima] 0.846 0.943 0.474 8e-32
224139636153 predicted protein [Populus trichocarpa] 0.863 0.993 0.544 8e-31
356555221183 PREDICTED: SCF ubiquitin ligase complex 0.875 0.841 0.441 1e-29
>gi|338227616|gb|AEI90837.1| SKP1 [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 127/167 (76%)

Query: 6   SSSCSAQATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAP 65
           + + +    K I+LKTAD + FEVEEPVAMEF  VK+FFD+N + +  TV+PLPNV A P
Sbjct: 14  TDTATPAPAKTITLKTADANYFEVEEPVAMEFATVKTFFDDNTETTFGTVIPLPNVLAEP 73

Query: 66  LSYIIEFCRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLT 125
           LS II++C+ +++FR + +P+   K ++ +F K  SN++L+E+IL  NYL++K++LD L 
Sbjct: 74  LSLIIQYCKRNLKFRAESAPEDARKAYDADFVKELSNEQLRELILAVNYLDVKNLLDVLN 133

Query: 126 ETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAFEGVDPD 172
           + VA+RIKNKSVEYVR+FFGIENDFTPEEE   R+E  WAFEGVD D
Sbjct: 134 QAVADRIKNKSVEYVRQFFGIENDFTPEEEARLREENAWAFEGVDED 180

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118482935|gb|ABK93380.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255544596|ref|XP_002513359.1| skp1, putative [Ricinus communis] gi|223547267|gb|EEF48762.1| skp1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224081401|ref|XP_002306396.1| predicted protein [Populus trichocarpa] gi|222855845|gb|EEE93392.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|386688462|gb|AFJ21661.1| SFB-interacting Skp1-like protein 1 [Prunus avium] Back     alignment and taxonomy information
>gi|451320833|emb|CCH26218.1| SLF-interacting Skp1-like protein 1 [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|451320831|emb|CCH26217.1| SLF-interacting Skp1-like protein 2 [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|227184175|gb|ACP20181.1| SKP1-like protein [Citrus maxima] Back     alignment and taxonomy information
>gi|224139636|ref|XP_002323204.1| predicted protein [Populus trichocarpa] gi|222867834|gb|EEF04965.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555221|ref|XP_003545933.1| PREDICTED: SCF ubiquitin ligase complex protein SKP1b-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query176
TAIR|locus:2056956149 SK14 "AT2G03170" [Arabidopsis 0.840 0.993 0.412 2.6e-24
TAIR|locus:2093084153 SK9 "AT3G21850" [Arabidopsis t 0.778 0.895 0.414 6.8e-24
TAIR|locus:2093094152 SK10 "AT3G21860" [Arabidopsis 0.767 0.888 0.410 1.8e-23
TAIR|locus:2204435160 SKP1 "AT1G75950" [Arabidopsis 0.778 0.856 0.421 1.3e-22
TAIR|locus:2056966200 SK19 "AT2G03160" [Arabidopsis 0.380 0.335 0.388 3.2e-21
TAIR|locus:2198621163 SK4 "AT1G20140" [Arabidopsis t 0.784 0.846 0.377 8e-21
UNIPROTKB|Q5ZKF5163 SKP1 "S-phase kinase-associate 0.761 0.822 0.388 1.7e-20
UNIPROTKB|Q3ZCF3163 SKP1 "S-phase kinase-associate 0.761 0.822 0.388 1.7e-20
UNIPROTKB|F8W8N3158 SKP1 "S-phase kinase-associate 0.761 0.848 0.388 1.7e-20
UNIPROTKB|P63208163 SKP1 "S-phase kinase-associate 0.761 0.822 0.388 1.7e-20
TAIR|locus:2056956 SK14 "AT2G03170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/155 (41%), Positives = 91/155 (58%)

Query:    13 ATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEF 72
             ++ KI L ++DG  FEVEE VA + +IV+   +  DD    T VPL NV+   LS ++E+
Sbjct:     2 SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIE--DDCVV-TEVPLQNVTGKILSIVVEY 58

Query:    73 CRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRI 132
             C+ HV   +      E KT++EEF K      + +++L ANYLNIK +LD   +TVA+RI
Sbjct:    59 CKKHVVDEES----DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRI 114

Query:   133 KNKSVEYVRKFFGIENDFTPXXXXXXXXXXXXXFE 167
             K+K+ E +R+ F IENDFTP             FE
Sbjct:   115 KDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2093084 SK9 "AT3G21850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093094 SK10 "AT3G21860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204435 SKP1 "AT1G75950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056966 SK19 "AT2G03160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198621 SK4 "AT1G20140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKF5 SKP1 "S-phase kinase-associated protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCF3 SKP1 "S-phase kinase-associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F8W8N3 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P63208 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P52285SKP1A_DICDINo assigned EC number0.37170.82950.9012yesno
Q5KU00SKP1_ASPORNo assigned EC number0.3750.85220.9316yesno
Q6PEC4SKP1_RATNo assigned EC number0.40.85220.9202yesno
Q9WTX5SKP1_MOUSENo assigned EC number0.40.85220.9202yesno
Q557E4SKP1B_DICDINo assigned EC number0.37170.82950.9012yesno
Q9Y709SKP1_SCHPONo assigned EC number0.38270.81810.8944yesno
Q5R512SKP1_PONABNo assigned EC number0.40.85220.9202yesno
O81057ASK14_ARATHNo assigned EC number0.45800.84090.9932yesno
Q5ZKF5SKP1_CHICKNo assigned EC number0.40.85220.9202yesno
Q3ZCF3SKP1_BOVINNo assigned EC number0.40.85220.9202yesno
Q4WTT8SKP1_ASPFUNo assigned EC number0.37340.84090.9367yesno
Q5BAX8SKP1_EMENINo assigned EC number0.38120.85220.9316yesno
P63209SKP1_CAVPONo assigned EC number0.40.85220.9202yesno
P63208SKP1_HUMANNo assigned EC number0.40.85220.9202yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.3408.1
SubName- Full=Putative uncharacterized protein; (151 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
pfam0146678 pfam01466, Skp1, Skp1 family, dimerisation domain 1e-27
COG5201158 COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen 4e-25
smart00512104 smart00512, Skp1, Found in Skp1 protein family 5e-16
pfam0393161 pfam03931, Skp1_POZ, Skp1 family, tetramerisation 8e-08
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain Back     alignment and domain information 
 Score = 98.4 bits (246), Expect = 1e-27
 Identities = 44/79 (55%), Positives = 55/79 (69%), Gaps = 1/79 (1%)

Query: 89  VKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIEN 148
           +K ++ EF      D L ++IL ANYLNIK +LD   + VA+ IK K+ E +R+ FGIEN
Sbjct: 1   LKEWDAEFVDVD-QDTLFDLILAANYLNIKGLLDLACQKVADMIKGKTPEEIREIFGIEN 59

Query: 149 DFTPEEEEAARKEYEWAFE 167
           DFTPEEEE  RKE EWAFE
Sbjct: 60  DFTPEEEEEIRKENEWAFE 78

Length = 78
>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family Back     alignment and domain information
>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 176
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 100.0
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 100.0
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 99.96
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 99.96
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 99.81
KOG3473112 consensus RNA polymerase II transcription elongati 99.76
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 98.75
PHA02713 557 hypothetical protein; Provisional 98.68
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 98.48
PHA02790 480 Kelch-like protein; Provisional 98.37
PHA03098 534 kelch-like protein; Provisional 98.34
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 98.26
KOG4682 488 consensus Uncharacterized conserved protein, conta 96.46
KOG4350 620 consensus Uncharacterized conserved protein, conta 96.26
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.47
KOG3433203 consensus Protein involved in meiotic recombinatio 93.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 93.45
COG5124209 Protein predicted to be involved in meiotic recomb 91.93
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 90.31
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 89.27
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 84.74
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-49  Score=300.50  Aligned_cols=155  Identities=45%  Similarity=0.695  Sum_probs=142.0

Q ss_pred             CCCCcEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCC--C----CC
Q 030521           12 QATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKK--R----SP   85 (176)
Q Consensus        12 ~~~~~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~--~----~~   85 (176)
                      |+.++|+|+|+||++|.|+.++|++|.+|++++...+...++.+||||+|+|.||++|++||+||+.++++  +    ..
T Consensus         2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~   81 (162)
T KOG1724|consen    2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPE   81 (162)
T ss_pred             CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccc
Confidence            67899999999999999999999999999999987776543369999999999999999999999998654  1    12


Q ss_pred             ccccchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcccc
Q 030521           86 KQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWA  165 (176)
Q Consensus        86 ~~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~d~t~EEe~~i~~e~~w~  165 (176)
                      ...+++||++|++. ++.+||+|+.|||||+|++|+++||+.||++++||||+|||++|||++|+|+||++++++++.|+
T Consensus        82 ~~~i~~WD~~Flk~-d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~~~~  160 (162)
T KOG1724|consen   82 ETDIPEWDAEFLKV-DQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKENEWA  160 (162)
T ss_pred             cCCccHHHHHHHhc-CHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhccccc
Confidence            23599999999995 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 030521          166 FE  167 (176)
Q Consensus       166 ~~  167 (176)
                      ++
T Consensus       161 ~~  162 (162)
T KOG1724|consen  161 FE  162 (162)
T ss_pred             cC
Confidence            85

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
2p1m_A160 Tir1-ask1 Complex Structure Length = 160 2e-24
2ast_A159 Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len 1e-20
2e31_B166 Structural Basis For Selection Of Glycosylated Subs 1e-20
1p22_B145 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 2e-20
3l2o_A149 Structure-Based Mechanism Of Dimerization-Dependent 2e-19
1fqv_B149 Insights Into Scf Ubiquitin Ligases From The Struct 3e-19
1fs1_B141 Insights Into Scf Ubiquitin Ligases From The Struct 1e-18
1ldk_D133 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-15
3mks_A169 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 1e-13
1nex_A169 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 3e-13
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 89/155 (57%), Gaps = 26/155 (16%)
Query: 13  ATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEF 72
           + KKI LK++DG  FEVEE VA+E + +    +   D   D  VPLPNV++  L+ +IE+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVE---DDCVDNGVPLPNVTSKILAKVIEY 58
Query: 73  CRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELK---------------EMILVANYLNI 117
           C+ HVE    ++   E        G + S+D+LK               E+IL ANYLNI
Sbjct: 59  CKRHVEAAASKAEAVE--------GAATSDDDLKAWDADFMKIDQATLFELILAANYLNI 110
Query: 118 KDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTP 152
           K++LD   +TVA+ IK K+ E +R  F I+NDFTP
Sbjct: 111 KNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166 Back     alignment and structure
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145 Back     alignment and structure
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149 Back     alignment and structure
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149 Back     alignment and structure
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141 Back     alignment and structure
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133 Back     alignment and structure
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169 Back     alignment and structure
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 2e-37
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 2e-34
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 6e-34
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 6e-31
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 1e-17
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 2e-14
2fnj_C96 Transcription elongation factor B polypeptide 1; b 5e-12
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169 Back     alignment and structure
 Score =  125 bits (315), Expect = 2e-37
 Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 11/168 (6%)

Query: 10  SAQATKKISLKTADGHLFEVEEPVAMEFEIVKSFF----DENDDASEDTVVPLPNVSAAP 65
           +   T  + L + +G  F V++ +A    ++K++     D++D+  ++ V+P+PNV ++ 
Sbjct: 2   AHMVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSV 61

Query: 66  LSYIIEFCRAHVEF------RKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKD 119
           L  +IE+   H +                V +++ EF      + L E+IL ANYLNIK 
Sbjct: 62  LQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREF-LKVDQEMLYEIILAANYLNIKP 120

Query: 120 MLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAFE 167
           +LD   + VA  I+ +S E +R+ F I NDFTPEEE A R+E EWA +
Sbjct: 121 LLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAED 168
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160 Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141 Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query176
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 100.0
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 100.0
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 100.0
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 100.0
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 99.96
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 99.95
2fnj_C96 Transcription elongation factor B polypeptide 1; b 99.94
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.9
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.07
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.94
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.94
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.91
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.87
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 98.8
2vpk_A116 Myoneurin; transcription regulation, transcription 98.8
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 98.8
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.8
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.77
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.73
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 98.71
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 98.69
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 98.66
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 98.63
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 98.57
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 98.42
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 98.4
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 98.37
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 93.55
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 82.45
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
Probab=100.00  E-value=2.5e-54  Score=333.65  Aligned_cols=155  Identities=36%  Similarity=0.589  Sum_probs=133.2

Q ss_pred             CCCCcEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCCC----CCCcccccCCCChHHHHHHHHHHHHhhhccCCC----
Q 030521           12 QATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDA----SEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKR----   83 (176)
Q Consensus        12 ~~~~~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~~----~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~----   83 (176)
                      |++++|+|+|+||++|.|++.+|.+|++|++|+++.+.+    ++..+||||+|++.+|++|++||+||+.++++.    
T Consensus         4 m~~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~   83 (169)
T 3v7d_A            4 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDD   83 (169)
T ss_dssp             --CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC----
T ss_pred             CCCCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccc
Confidence            667899999999999999999999999999999976542    123699999999999999999999999987542    


Q ss_pred             --CCccccchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Q 030521           84 --SPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKE  161 (176)
Q Consensus        84 --~~~~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~d~t~EEe~~i~~e  161 (176)
                        .....+++||++|++. ++..||+||.|||||+|++|+++||++||++|+||||+|||++|||++||||||+++||+|
T Consensus        84 ~~~~~~~i~~wD~~Fl~v-d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~e  162 (169)
T 3v7d_A           84 DSRKSAPVDSWDREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE  162 (169)
T ss_dssp             ----CCCCCHHHHHHTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTT
T ss_pred             cccccccccHHHHHHHcC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence              1234799999999998 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 030521          162 YEWAFE  167 (176)
Q Consensus       162 ~~w~~~  167 (176)
                      |+|+|+
T Consensus       163 n~W~~~  168 (169)
T 3v7d_A          163 NEWAED  168 (169)
T ss_dssp             C-----
T ss_pred             cccccc
Confidence            999997
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 176
d1nexa170 a.157.1.1 (A:116-185) Centromere DNA-binding prote 1e-21
d2c9wc196 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens 1e-17
d1hv2a_99 d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy 2e-17
d1nexa272 d.42.1.1 (A:4-103) Centromere DNA-binding protein 6e-13
d1fs1b155 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, 1e-12
d1fs1b261 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk 4e-12
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70 Back     information, alignment and structure

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (200), Expect = 1e-21
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 89  VKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIEN 148
           V +++ EF K    + L E+IL ANYLNIK +LD   + VA  I+ +S E +R+ F I N
Sbjct: 1   VDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN 59

Query: 149 DFTPEEEEAAR 159
           DFTPEEE A R
Sbjct: 60  DFTPEEEAAIR 70
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99 Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query176
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 99.96
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 99.95
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.89
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 99.85
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.83
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.96
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.91
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1e-29  Score=167.07  Aligned_cols=70  Identities=50%  Similarity=0.707  Sum_probs=67.2

Q ss_pred             cchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHH
Q 030521           89 VKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAAR  159 (176)
Q Consensus        89 ~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~d~t~EEe~~i~  159 (176)
                      +++||.+|++. +...||+|+.|||||+|++|+++||++||.+|+||||+|||++|||++|+||||+++||
T Consensus         1 i~~wD~~F~~~-d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhc-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            46899999987 99999999999999999999999999999999999999999999999999999998864
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure