Citrus Sinensis ID: 030524

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCIT
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccccccccHHHHHcccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHEEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAPVSALAKYKLVflgdqsvgktSIITRFMydkfdntyqaTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIpsyirdssVAVVVYDVASrqsflntsKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCIT
Flexible Loop (DISEMBL)
MAPVSALAKYKlvflgdqsvgktSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSlipsyirdsSVAVVVYDVasrqsflntskwidevrtergsdviivlvgnktdlvekrqvsieegeaksrelNVMFIETSAKAGFNIKLCCHTLNSLITVCIT
Low Complexity Region (SEG)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRdssvavvvydvasRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCIT
Disordered region (IsUnstruct)
*****ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV**********ELNVMFIETSAKAGFNIKLCCHTLNSLITVCI*
Disordered Region (DISOPRED)
*****AL*KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCI*
Disordered Region (DISEMBL)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCIT
Disordered Region (DISPRO)
**PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCIT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
O80501	208	Ras-related protein RABH1	yes	no	0.914	0.769	0.962	2e-87
Q9LFT9	207	Ras-related protein RABH1	no	no	0.914	0.772	0.906	1e-80
Q9SID8	207	Ras-related protein RABH1	no	no	0.914	0.772	0.912	4e-80
Q9SMR4	214	Ras-related protein RABH1	no	no	0.914	0.747	0.857	7e-75
Q5RAV6	208	Ras-related protein Rab-6	yes	no	0.891	0.75	0.839	1e-73
P20340	208	Ras-related protein Rab-6	yes	no	0.891	0.75	0.839	1e-73
Q9WVB1	208	Ras-related protein Rab-6	yes	no	0.891	0.75	0.839	1e-73
P35279	208	Ras-related protein Rab-6	yes	no	0.891	0.75	0.839	1e-73
P34213	205	Ras-related protein Rab-6	yes	no	0.891	0.760	0.826	3e-73
Q1KME6	208	Ras-related protein Rab-6	yes	no	0.891	0.75	0.826	3e-73

>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1

 Score =  320 bits (821), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 159/160 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Binds GTP and GDP and possesses intrinsic GTPase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1

 Score =  298 bits (763), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/160 (90%), Positives = 154/160 (96%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVA+RQSFLNTSKWI++VRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEEG+ K+R+  V+FIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIK 160

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3 SV=1

 Score =  296 bits (759), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 146/160 (91%), Positives = 150/160 (93%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA+R SFLNTSKWI+EVR ER  DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEG++K RE  VMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIK 160

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1

 Score =  279 bits (713), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 138/161 (85%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVL 119
           QLWDTAGQERFRSLIPSYIRDSSVA+VVYDV++RQ+FLNTSKWI++V  ERG S+VIIVL
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           VGNKTDLVEKRQVSI EGE K +E  VMFIETSAK  FNIK
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIK 161

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3

 Score =  275 bits (703), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Pongo abelii (taxid: 9601)

>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3

 Score =  275 bits (703), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2

 Score =  275 bits (703), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Rattus norvegicus (taxid: 10116)

>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4

 Score =  275 bits (703), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Mus musculus (taxid: 10090)

>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1

 Score =  274 bits (700), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 144/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +AL K+KLVFLG+QSVGKTSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 7   NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 66

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDSSVAVVVYD+ +  SF  T+KW+D+VR ERG DVIIVLVGNKT
Sbjct: 67  TAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKT 126

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVS E+GE K+R+LNVMFIETSAKAG+N+K
Sbjct: 127 DLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVK 162

Protein transport. Probably involved in vesicular traffic.

Caenorhabditis elegans (taxid: 6239)

>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3

 Score =  273 bits (699), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 145/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+ AVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
225427294	208	PREDICTED: ras-related protein RABH1b [V	0.914	0.769	0.981	6e-87
356497062	207	PREDICTED: ras-related protein RABH1b-li	0.914	0.772	0.968	4e-86
224126375	208	predicted protein [Populus trichocarpa]	0.914	0.769	0.968	4e-86
449461547	208	PREDICTED: ras-related protein RABH1b-li	0.914	0.769	0.968	5e-86
255571107	208	protein with unknown function [Ricinus c	0.914	0.769	0.968	8e-86
357482281	226	Ras-related protein Rab-6 [Medicago trun	0.914	0.707	0.962	9e-86
15224916	208	Ras-related protein RABH1B [Arabidopsis	0.914	0.769	0.962	1e-85
255575776	208	protein with unknown function [Ricinus c	0.914	0.769	0.962	1e-85
225453266	208	PREDICTED: ras-related protein RABH1b [V	0.914	0.769	0.962	2e-85
388498202	206	unknown [Medicago truncatula]	0.914	0.776	0.962	2e-85

>gi|225427294|ref|XP_002281823.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera] gi|147782540|emb|CAN75036.1| hypothetical protein VITISV_014840 [Vitis vinifera]

 Score =  325 bits (832), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 157/160 (98%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497062|ref|XP_003517383.1| PREDICTED: ras-related protein RABH1b-like [Glycine max]

 Score =  322 bits (825), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126375|ref|XP_002329538.1| predicted protein [Populus trichocarpa] gi|222870247|gb|EEF07378.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTIRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+V+DVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461547|ref|XP_004148503.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus] gi|449528471|ref|XP_004171228.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus]

 Score =  321 bits (823), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 159/160 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAP SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571107|ref|XP_002526504.1| protein with unknown function [Ricinus communis] gi|223534179|gb|EEF35895.1| protein with unknown function [Ricinus communis]

 Score =  321 bits (822), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIK 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482281|ref|XP_003611426.1| Ras-related protein Rab-6 [Medicago truncatula] gi|355512761|gb|AES94384.1| Ras-related protein Rab-6 [Medicago truncatula]

 Score =  320 bits (821), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTTKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIE+GEAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIK 160

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224916|ref|NP_181989.1| Ras-related protein RABH1B [Arabidopsis thaliana] gi|297828175|ref|XP_002881970.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp. lyrata] gi|75318653|sp|O80501.1|RAH1B_ARATH RecName: Full=Ras-related protein RABH1b; Short=AtRABH1b; AltName: Full=Ras-related protein Rab6A; Short=AtRab6A gi|3341681|gb|AAC27463.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|21593488|gb|AAM65455.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|107738267|gb|ABF83670.1| At2g44610 [Arabidopsis thaliana] gi|110742258|dbj|BAE99055.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|297327809|gb|EFH58229.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp. lyrata] gi|330255353|gb|AEC10447.1| Ras-related protein RABH1B [Arabidopsis thaliana] gi|741994|prf||2008312A GTP-binding protein

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 159/160 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575776|ref|XP_002528787.1| protein with unknown function [Ricinus communis] gi|223531790|gb|EEF33609.1| protein with unknown function [Ricinus communis]

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+V+DVASRQ+FLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARDLNVMFIETSAKAGFNIK 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453266|ref|XP_002266653.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTAKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIK 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498202|gb|AFK37167.1| unknown [Medicago truncatula]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 159/160 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNTSKWI+EVR+ERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDVIVVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVS EEGEAKSRELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSTEEGEAKSRELNVMFIETSAKAGFNIK 160

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2042321	208	RAB6A [Arabidopsis thaliana (t	0.914	0.769	0.887	2.6e-70
TAIR|locus:2145392	207	RABH1e "RAB GTPase homolog H1E	0.914	0.772	0.837	1.2e-65
TAIR|locus:2060415	207	RABH1d "RAB GTPase homolog H1D	0.914	0.772	0.837	6.7e-65
UNIPROTKB|F1N8I9	175	RAB6A "Ras-related protein Rab	0.914	0.914	0.768	5.5e-61
UNIPROTKB|H7BYW1	174	RAB6A "Ras-related protein Rab	0.902	0.908	0.770	5.5e-61
TAIR|locus:2140045	214	RABH1c "RAB GTPase homolog H1C	0.914	0.747	0.795	5.5e-61
UNIPROTKB|Q1KME6	208	RAB6A "Ras-related protein Rab	0.88	0.740	0.785	7.1e-61
UNIPROTKB|F1MBF6	208	RAB6A "Uncharacterized protein	0.88	0.740	0.785	7.1e-61
UNIPROTKB|P20340	208	RAB6A "Ras-related protein Rab	0.88	0.740	0.792	7.1e-61
UNIPROTKB|F1SUT0	208	RAB6A "Uncharacterized protein	0.88	0.740	0.785	7.1e-61

TAIR|locus:2042321 RAB6A [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 142/160 (88%), Positives = 146/160 (91%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             RQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK
Sbjct:   121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0032940 "secretion by cell" evidence=IGI

TAIR|locus:2145392 RABH1e "RAB GTPase homolog H1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 134/160 (83%), Positives = 141/160 (88%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             RQSFLNTSKWI++VRTERGSDVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             GNKTDLV+KRQVSIEEG+ K+R+  V+FIETSAKAGFNIK
Sbjct:   121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIK 160

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2060415 RABH1d "RAB GTPase homolog H1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 134/160 (83%), Positives = 137/160 (85%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             R SFLNTSKWI+EVR ER  DVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             GNKTDLVEKRQVSIEEG++K RE  VMFIETSAKAGFNIK
Sbjct:   121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIK 160

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|F1N8I9 RAB6A "Ras-related protein Rab-6A" [Gallus gallus (taxid:9031)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 123/160 (76%), Positives = 135/160 (84%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K   + L
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQVSNAL 170

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|H7BYW1 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 124/161 (77%), Positives = 135/161 (83%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:     3 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 62

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    63 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 122

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL---CCH 164
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K     CH
Sbjct:   123 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQRIGSCH 163

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

TAIR|locus:2140045 RABH1c "RAB GTPase homolog H1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 128/161 (79%), Positives = 134/161 (83%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-SDVIIVL 119
             QLWDTAGQERFRSLIPSYIR             RQ+FLNTSKWI++V  ERG S+VIIVL
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query:   120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             VGNKTDLVEKRQVSI EGE K +E  VMFIETSAK  FNIK
Sbjct:   121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIK 161

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|Q1KME6 RAB6A "Ras-related protein Rab-6A" [Gallus gallus (taxid:9031)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=ISS

UNIPROTKB|F1MBF6 RAB6A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P20340 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/154 (79%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000042 "protein targeting to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0034067 "protein localization to Golgi apparatus" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0072385 "minus-end-directed organelle transport along microtubule" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|F1SUT0 RAB6A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1KME6	RAB6A_CHICK	No assigned EC number	0.8269	0.8914	0.75	yes	no
P34213	RAB6A_CAEEL	No assigned EC number	0.8269	0.8914	0.7609	yes	no
P35279	RAB6A_MOUSE	No assigned EC number	0.8397	0.8914	0.75	yes	no
Q9SID8	RAH1D_ARATH	No assigned EC number	0.9125	0.9142	0.7729	no	no
O80501	RAH1B_ARATH	No assigned EC number	0.9625	0.9142	0.7692	yes	no
Q55FK2	RAB6_DICDI	No assigned EC number	0.8152	0.8971	0.7548	yes	no
Q5RAV6	RAB6A_PONAB	No assigned EC number	0.8397	0.8914	0.75	yes	no
P17608	RYH1_SCHPO	No assigned EC number	0.7948	0.8914	0.7761	yes	no
Q9WVB1	RAB6A_RAT	No assigned EC number	0.8397	0.8914	0.75	yes	no
Q99260	YPT6_YEAST	No assigned EC number	0.6751	0.8857	0.7209	yes	no
P20340	RAB6A_HUMAN	No assigned EC number	0.8397	0.8914	0.75	yes	no
Q9LFT9	RAH1E_ARATH	No assigned EC number	0.9062	0.9142	0.7729	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-108
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-79
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-77
pfam00071	162	pfam00071, Ras, Ras family	3e-74
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	7e-66
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-64
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-57
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-55
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-54
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	7e-54
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-52
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-49
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-48
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-46
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-46
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-44
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-44
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-42
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-42
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-42
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-41
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	7e-41
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-40
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-40
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-39
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-39
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-39
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-39
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	7e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-38
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	8e-35
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-34
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-34
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-33
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-33
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	9e-33
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-32
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	5e-32
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-31
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	8e-31
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-30
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	9e-30
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-29
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-28
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-28
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	5e-28
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	9e-28
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	6e-27
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-26
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	7e-26
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-25
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-25
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	6e-25
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	9e-25
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-24
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	4e-24
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	5e-24
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-23
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	6e-23
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	8e-23
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	9e-23
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-21
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-21
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-21
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-21
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-21
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	9e-21
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-20
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-20
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-19
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-18
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-17
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-16
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-16
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	6e-15
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-13
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	9e-13
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-12
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	5e-12
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	4e-11
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-08
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	8e-08
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-07
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	5e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	6e-07
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-05
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	7e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-04
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	4e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	4e-04
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	6e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	9e-04
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.001
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.002
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	0.004

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  305 bits (784), Expect = e-108
 Identities = 127/151 (84%), Positives = 139/151 (92%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLGDQSVGKTSIITRFMYD FDN YQATIGIDFLSKTMY++D+TVRLQLWDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRSLIPSYIRDSSVAVVVYD+ +RQSF NT KWID+VR ERG+DVIIVLVGNKTDL +K
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS EEGE K++E N MFIETSAKAG N+K
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVK 151

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  232 bits (595), Expect = 2e-79
 Identities = 74/157 (47%), Positives = 110/157 (70%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S+++RF   KF   Y++TIG+DF +KT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R +  A++VYD+ +R+SF N   W+ E+R     +V+I+LVGNK+DL E+
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           RQVS EE EA + E  + F ETSAK   N++     L
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEEL 157

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  228 bits (583), Expect = 1e-77
 Identities = 74/153 (48%), Positives = 112/153 (73%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGKTS++ RF+ +KF   Y++TIG+DF SKT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R +  A++VYDV +R+SF N  KW++E++     ++ I+LVGNK+DL ++
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162
           RQVS EE +  ++E  ++F ETSAK G N+   
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEA 153

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  219 bits (560), Expect = 3e-74
 Identities = 77/150 (51%), Positives = 107/150 (71%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD  VGK+S++ RF  +KF   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR+L P Y R +   ++VYD+ SR SF N  KW++E+      +V IVLVGNK DL ++R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            VS EEGEA ++EL + F+ETSAK   N++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVE 150

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  198 bits (506), Expect = 7e-66
 Identities = 72/152 (47%), Positives = 106/152 (69%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV LGD SVGK+SI+ RF+ ++F    ++TIG  FL++T+ L+D TV+ ++WDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+RSL P Y R ++ A+VVYD+ S +SF     W+ E++     +++I L GNK DL  
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           KRQVS EE +  + E  ++F+ETSAK G N+ 
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVN 152

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  194 bits (495), Expect = 3e-64
 Identities = 94/132 (71%), Positives = 111/132 (84%)

Query: 30  MYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89
           MYD FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQERFRSLIPSYIRDS+ A+VVY
Sbjct: 1   MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60

Query: 90  DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149
           D+ +RQSF NT+KWI ++  ERG DVII LVGNKTDL + R+V+ EEG  K++E N MF 
Sbjct: 61  DITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120

Query: 150 ETSAKAGFNIKL 161
           ETSAKAG NIK+
Sbjct: 121 ETSAKAGHNIKV 132

Length = 176

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  177 bits (451), Expect = 1e-57
 Identities = 61/150 (40%), Positives = 95/150 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R++ +KF+  +++T    F  KT+ +  + + L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+ +L P Y RD+  A++VYD+    SF    KWI E++  RG+++ +V+VGNK DL  +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R VS  E E  ++ +     ETSAK G  I
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGI 150

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  171 bits (435), Expect = 4e-55
 Identities = 60/157 (38%), Positives = 108/157 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ ++ +T++ Q+WDTAGQE
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+  + +F N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  EE +A + +  + FIETSA  G N++     L
Sbjct: 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  169 bits (429), Expect = 3e-54
 Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+S++ RF  D FD    +TIG+DF  KT+ ++ + V+L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVE 128
           RFR+L  SY R +   ++VYDV  R +F N   W++E+ T     D + +LVGNK D  E
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDK-E 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162
            R+V+ EEG+  +R+ N++FIETSAK    ++  
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQA 153

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  168 bits (427), Expect = 7e-54
 Identities = 72/161 (44%), Positives = 105/161 (65%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D F+ ++ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   ++VYD+   +SF N   W+  +      DV  +LVGNK D+ EK
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R VS EEGEA +RE  + F+ETSAKA  N++    TL   I
Sbjct: 124 RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  162 bits (413), Expect = 8e-52
 Identities = 66/161 (40%), Positives = 103/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +TV+LQ+WDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W+ E+      +V  +LVGNK DL +K
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V   E +  + EL + F+ETSAK   N++    T+   I
Sbjct: 123 KVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  156 bits (395), Expect = 3e-49
 Identities = 60/150 (40%), Positives = 100/150 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  ++V+LQ+WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+SF   + W+ + RT    D++I+LVGNK DL + 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R+V+  E    ++E  ++F+ETSA  G N+
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENV 150

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  154 bits (390), Expect = 2e-48
 Identities = 62/151 (41%), Positives = 97/151 (64%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT ++ RF    F      TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++ YD+  R SF +   WI+EV     S+V+++L+GNK DL E+
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNI 159
           R+V  EE    +    ++  +ETSAK   N+
Sbjct: 124 REVLFEEACTLAEHYGILAVLETSAKESSNV 154

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  149 bits (378), Expect = 2e-46
 Identities = 60/150 (40%), Positives = 104/150 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S++ I+L+GNK DL  +
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R+VS EEGEA +RE  ++F+ETSAK   N+
Sbjct: 125 REVSYEEGEAFAREHGLIFMETSAKTASNV 154

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  148 bits (376), Expect = 3e-46
 Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 2/150 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG   VGK+++  RF+  +F   Y  TI  D   K + ++  T  L + DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK 129
           F ++   YIR+    ++VY + SR+SF       +++   +  + + IVLVGNK DL  +
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           RQVS EEGEA + E    F+ETSAK   NI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINI 149

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  145 bits (367), Expect = 1e-44
 Identities = 66/158 (41%), Positives = 103/158 (65%), Gaps = 1/158 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   ++ AT+GI F +K + ++   V+LQ+WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+     SDV+I+L+GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           +R V  E+GE  ++E  V F+ETSAK G N++L    +
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  143 bits (363), Expect = 3e-44
 Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 7/156 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V LQ+WDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR----TERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+VYDV + +SF +   W DE           +   V++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 126 LVEKRQVSIEEGEA--KSRELNVMFIETSAKAGFNI 159
           L EKRQVS ++ +   KS+  N+ + ETSAK   N+
Sbjct: 121 LEEKRQVSTKKAQQWCKSKG-NIPYFETSAKEAINV 155

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  140 bits (354), Expect = 2e-42
 Identities = 62/153 (40%), Positives = 104/153 (67%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 67
           +++L+ +GD +VGK+S++ RF   +F      T+G+DF S+ + +E    ++LQLWDTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL 126
           QERFRS+  SY R+S   ++V+D+ +R+SF +   W++E R+  +    + +LVG+K DL
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             +RQV+ EE E  +++L + +IETSA+ G N+
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNV 154

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  139 bits (353), Expect = 3e-42
 Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 7/168 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQ 68
           +K++ +GD  VGKTSII R+++  F   Y+ATIG+DF  K +  +  T VRLQLWD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---ID-EVRTERGSDVIIVLVGNKT 124
           ERF  +   Y + +  A++V+DV    +F    KW   +D +V    G  +  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 125 DLVEKR-QVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCCHTLNSLI 170
           DL ++R     E+ +   +E   + + ETSAK   NI+     L   I
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI 168

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  139 bits (352), Expect = 5e-42
 Identities = 61/157 (38%), Positives = 109/157 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK++I++RF  ++F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+  RQ+F N  +W+ E+R    S+++I++ GNK+DL   
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V+ E+G+A + +  + F+ETSA    N++    T+
Sbjct: 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  135 bits (341), Expect = 6e-41
 Identities = 55/151 (36%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I L+GNK DL  +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVE 153

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  136 bits (344), Expect = 7e-41
 Identities = 56/151 (37%), Positives = 103/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    +++ I+L+GNK DL  +
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS EEGE  ++E  ++F+E SAK   N++
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157

Length = 210

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  133 bits (337), Expect = 2e-40
 Identities = 59/151 (39%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F + + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   + +L   F E SAK   N+K
Sbjct: 122 RVVSAERGRQLADQLGFEFFEASAKENINVK 152

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  133 bits (336), Expect = 5e-40
 Identities = 65/171 (38%), Positives = 99/171 (57%), Gaps = 11/171 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------VRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
           QLWDTAGQERFRSL  ++ RD+   ++++D+ S QSFLN   W+ +++     +   IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           +GNK DL ++R+VS  +    + +  + + ETSA  G N++    TL  LI
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 176

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  132 bits (333), Expect = 1e-39
 Identities = 61/151 (40%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ ++   ++LQ+WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI +LVGNK DL E+
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVE 158

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  131 bits (333), Expect = 1e-39
 Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++     L + DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY +  RQSF    K+ +++ R +   DV IVLVGNK DL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           +R VS EEG+  +R+    F+ETSAK   N+    + L
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  131 bits (332), Expect = 2e-39
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++     L + DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY +  RQSF   +K+ +++ R +   DV IVLVGNK DL  
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +R VS EEG+  +R+    F+ETSAK   N+
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINV 152

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  132 bits (334), Expect = 2e-39
 Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 16/167 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K+V LGD  VGKT+++ R + D+F   Y  TIG    +KT+    R ++LQLWDTAGQ
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +RSL P Y R ++  ++VYD   R+S    T +W++E+R     DV I+LVGNK DL 
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124

Query: 128 EKRQVSIEEGEAKSREL---------------NVMFIETSAKAGFNI 159
           +++  S E     +RE+               N   +ETSAK+    
Sbjct: 125 DEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGP 171

Length = 219

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  131 bits (330), Expect = 7e-39
 Identities = 63/159 (39%), Positives = 99/159 (62%), Gaps = 5/159 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVE 128
           RFR++  +Y R +   +VVYDV + +SF+N  +W+ E+  E+  D +  VLVGNK D  E
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK--LCCHT 165
           ++ V  E+    + ++ +   ETSAK   N++    C T
Sbjct: 125 RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  128 bits (324), Expect = 2e-38
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQ 68
           K++ +G+ +VGK+S+I RF+   F   Y+ TIG+DFL K ++L      VRL LWDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E F ++  +Y R +   ++V+    R+SF     W ++V  E G D+ +VLV  K DL++
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +  ++ EE EA ++ L +    TS K  FN+
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  127 bits (321), Expect = 6e-38
 Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 2/148 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  +T+ ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 70  RFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYDV +  SF +   WI+E       ++V  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKA 155
           E+ QV  +  +  +   ++   ETSAK 
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKD 150

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  119 bits (300), Expect = 6e-35
 Identities = 59/151 (39%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           ++L+ +GD  VGKT ++ RF  ++F +++ +TIG+DF  KT+ ++   VR+Q+WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R++++   Y R +    +VYD++S +S+ +  KW+ +V       V  +L+GNK D  +K
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQV  E+G   ++E  + F ETSA    NIK
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIK 151

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  119 bits (301), Expect = 8e-35
 Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V LQ+WDTAGQER
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           FRSL   + R S   ++ + V   QSF N S W  E       +       V++GNK D 
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID- 125

Query: 127 VEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           + +RQVS EE +A  R+     + ETSAK   N+
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 159

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  119 bits (300), Expect = 2e-34
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 6/156 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           K+V LG +SVGKTS++ R+++ +F    YQ TIG  F++K M + +R V L +WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+ ++   Y R +  A+V YD+    SF     W+ E++        I L G K+DL+E+
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQ 120

Query: 130 ----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161
               RQV   + +  + E+     ETS+K G N+  
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDE 156

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  119 bits (301), Expect = 2e-34
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K+V LGD + GKTS+I RF  + F  +Y+ TIG+DF S+ + L     V LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
           +    ++  YI  +    +VYD+ + QSF N   W   + +V  E  +   +VLVGNKTD
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162
           L   RQV+ E+    ++E ++  I  SAK G  + LC
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLC 157

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  116 bits (293), Expect = 1e-33
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 17/164 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 71  FRSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           +  L P SY   + V ++ + V S  SF N  +KW  E++     +V I+LVG K DL +
Sbjct: 61  YDRLRPLSY-PQTDVFLLCFSVDSPSSFENVKTKWYPEIK-HYCPNVPIILVGTKIDLRD 118

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                      ++ ++ EEGE  ++E+  V ++E SA     +K
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLK 162

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  117 bits (295), Expect = 2e-33
 Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 3/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S++  F+    ++    TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRT-ERGSDVIIVLVGNKTDLV 127
           RFR+L  SY R++   ++VYDV  R++F N S  W  EV       D + +LVGNK D  
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            +R VS EEG A ++E   +F+E SAK   N++ C   L
Sbjct: 134 SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL 172

Length = 211

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  114 bits (287), Expect = 9e-33
 Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +G+  VGK+ II R+   +F + Y  TIGID+  K + + ++ VR+  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-----DVIIVLVGNKTD 125
           +  +   + +D+   ++VYDV  RQSF     W+ E++ E G      ++++V+  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168
           L + R VS +EG   +      + ETSA  G  +     TL S
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS 164

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  113 bits (285), Expect = 4e-32
 Identities = 56/150 (37%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F S+  +Y R +   ++VYD+  +++F +  KW+  +      D  ++LVGNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 131 QVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           +++ ++GE  ++++  M F E SAK  FN+
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNV 151

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  113 bits (283), Expect = 5e-32
 Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 4/153 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD  VGKT++  +   + F  TY  TI  D   K + ++ +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTDLV 127
           + +L   +IR+    ++VY + SR +F    ++   I  V+ E  +DV I++VGNK D V
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +R+VS EEG A +R L   FIE SAK   N++
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVE 152

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  112 bits (281), Expect = 1e-31
 Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K + +GD  VGK  I+        ++ Y   +GID+ + T+ L+ R V+LQLWDT+GQ R
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  SY R +   ++VYD+ +R SF    +WI E+  E    V  +LVGN+  L  KR
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKR 126

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           QV+ E+ +A +    + F E S    FNI
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNI 155

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  109 bits (274), Expect = 8e-31
 Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD SVGKT +I RF  D FD  Y+ATIG+DF  +   +      LQLWDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEK 129
           F+ +  +Y R +   ++V+D+    S  +T +W+ D ++    S V++ LVG K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 130 RQVSIEEGEA--KSRELNVMFIETSAKAGFNIK 160
            Q ++ E +A   +RE+   +   SA  G N++
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVR 154

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  107 bits (270), Expect = 3e-30
 Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 5/155 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTA 66
           +   +GD +VGK++++  F  D   F   Y  T G D + KT+ + D   +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD 125
           GQE F  ++ +     +V  VVYDV +  SF N S+WI+ VRT   G     VLVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L ++R+V   + +A ++   + F ETSAK G   +
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYE 156

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  106 bits (268), Expect = 9e-30
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 18/164 (10%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           LV +GD +VGKT ++  +  + F   Y  T+  +  S  + ++ + V L LWDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 72  RSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
             L P SY  D+ V ++ + V S  SF N   KW  EV+     +V I+LVG K DL   
Sbjct: 60  DRLRPLSY-PDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRND 117

Query: 127 -------VEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                   +K+Q  V+ E+G+A ++ +  V ++E SA     ++
Sbjct: 118 KSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVR 161

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  106 bits (266), Expect = 1e-29
 Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             YKLV +G   VGK+++  +F+   F   Y  TI  D  +K   ++ +  RL + DTAG
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
           QE F ++   Y+R     ++V+ V  R SF    K+  ++ R +   +  ++LVGNK DL
Sbjct: 60  QEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
             +RQVS EEG+  +R+L + +IETSAK   N+    H L  +I
Sbjct: 120 EHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  103 bits (259), Expect = 1e-28
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           E+F S+   YI++    +VVY + ++Q+F +     D+ VR +    V I+LVGNK DL 
Sbjct: 60  EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +R+VS  EG A + E    F+ETSAK+   +
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  102 bits (256), Expect = 3e-28
 Identities = 51/151 (33%), Positives = 91/151 (60%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V+L + DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            + ++  +Y R     ++V+ +   +SF   +++ +++ R +   +V ++LVGNK DL +
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           KRQVS+EE    + +  V ++ETSAK   N+
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANV 150

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  103 bits (259), Expect = 5e-28
 Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 13/163 (7%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M  +  + ++KL+ +GD  VGKT+ + R +  +F+  Y  T+G++      Y     +  
Sbjct: 1   MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICF 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVL 119
            +WDTAGQE+F  L   Y      A++++DV SR ++ N   W  D VR     ++ IVL
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVL 118

Query: 120 VGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFN 158
           VGNK D V+ RQV     +A+     R+ N+ + + SAK+ +N
Sbjct: 119 VGNKVD-VKDRQV-----KARQITFHRKKNLQYYDISAKSNYN 155

Length = 215

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  101 bits (255), Expect = 9e-28
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+   F  +Y  TI   F SK +  + +   L++ DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 71  FRSLIP-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128
           + S++P  Y       ++VY V SR+SF       D++    G + + IVLVGNK+DL  
Sbjct: 62  Y-SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +RQVS EEG+  +      F+E+SAK   N++
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVE 152

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 99.3 bits (248), Expect = 6e-27
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 7/153 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG   VGK+++  RF+  +F   Y+  +     S+ + ++   V L++ DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLE-SLYSRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 71  F--RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
                 +   +R +   V+VY +  R SF   S+    I E++  R  ++ ++LVGNK D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKK-RDGEIPVILVGNKAD 118

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158
           L+  RQVS EEG+  + EL  +F E SA   + 
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 98.8 bits (246), Expect = 2e-26
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  +YKLV +G   VGK+++  +F+ + F + Y  TI  D   K   +++ T  L + DT
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCLLDILDT 60

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + VY + SR SF   + + +++ R +    V ++LVGNK 
Sbjct: 61  AGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL  +RQVS  EG+  ++   + F+ETSAK   N+    + L
Sbjct: 121 DLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162

Length = 189

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 96.5 bits (240), Expect = 7e-26
 Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 3/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++ +   L++ DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
           +F ++   YI++     +VY + ++QSF +     +++ R +   DV ++LVGNK DL +
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 129 KRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
           +R VS EEG+  +R+  N  F+ETSAK+  N+
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINV 152

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 96.3 bits (240), Expect = 2e-25
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 23/169 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDT 65
           K K+V +GD   GKT ++  +    F   Y  T+   F +    L+    + + L LWDT
Sbjct: 3   KVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALWDT 59

Query: 66  AGQERFRSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           AGQE +  L P SY  D  V ++ Y V +  S  N   KW  EV         IVLVG K
Sbjct: 60  AGQEDYDRLRPLSY-PDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLK 117

Query: 124 TDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNI 159
           TDL + +             V+ E+GE+ ++ +  V +IE SAK   N+
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENV 166

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 95.7 bits (238), Expect = 2e-25
 Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+   F + +  TI  D       +++    L + DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKTQARIDNEPALLDILDTAGQA 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++ Y V  R SF   S++ + + R     D+ +VLVGNK DL +
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           +RQV+ EEG   +RE N  F ETSA   F I    H L
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGL 159

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 94.9 bits (236), Expect = 3e-25
 Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 2/152 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E+F ++   Y+++    V+VY + ++ +F +     +++ R +   DV ++LVGNK DL 
Sbjct: 60  EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           ++R V  E+G+  +R+    F+ETSAKA  N+
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINV 151

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 94.0 bits (234), Expect = 6e-25
 Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E + ++   Y+R     + V+ + SR+SF +   + +++ R +   DV +VLVGNK DL 
Sbjct: 60  EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL- 118

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
             R VS  +G+  ++   + +IETSAK    ++   +TL
Sbjct: 119 AARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 93.7 bits (233), Expect = 9e-25
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 13  VFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           V +G   VGK+S++   +  +     +    T   D       L+   V+L L DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 70  RF-----RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
            F       L    +R + + ++V D   R+S  +    I   R  R   + I+LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLIL--RRLRKEGIPIILVGNKI 116

Query: 125 DLVEKRQVS-IEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL+E+R+V  +   E  ++ L V   E SAK G  + 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVD 153

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 94.8 bits (236), Expect = 1e-24
 Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LGD  VGK+S+   F    ++++     G D   +T+ ++     L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVE 128
               L  S ++     V+VY V  R SF   S+   ++R  R + D+ I+LVGNK+DLV 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N+ 
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVD 152

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 93.4 bits (232), Expect = 4e-24
 Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 40/194 (20%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQE 69
           K+V LGD +VGKTS++ R+M  +F +T  +T+G  F     YL+      + +WDTAG+E
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAF-----YLKQWGPYNISIWDTAGRE 55

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +F  L   Y R ++  ++ YDV++ QS          +      D +  +VGNK DL E 
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 129 ------------------KRQVSIEEGEAKSRELN--------------VMFIETSAKAG 156
                             +RQV++E+ +A  + +N               M  ETSAK G
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 157 FNIKLCCHTLNSLI 170
           +N+      L +L+
Sbjct: 176 YNVDELFEYLFNLV 189

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 91.8 bits (228), Expect = 5e-24
 Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD +VGK+ ++ RF+ D ++    +T  +         E +T+ +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F+++  SY   +   ++V+DV  + ++ N SKW +E+R  R  ++  ++V NK DL +  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDL-DPS 119

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
               +   A+   L + +   SA  G N+
Sbjct: 120 VTQKKFNFAEKHNLPLYY--VSAADGTNV 146

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 91.7 bits (228), Expect = 2e-23
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 13/154 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128
           +F  L   Y      A++++DV +R ++ N   W  ++   R  + I IVL GNK D V+
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNKVD-VK 130

Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFN 158
            RQV     +AK     R+ N+ + E SAK+ +N
Sbjct: 131 NRQV-----KAKQVTFHRKKNLQYYEISAKSNYN 159

Length = 219

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 89.4 bits (222), Expect = 6e-23
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS+I  +  + +   Y  T   D  S  + ++ + VRLQL DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           F  L P    D+ V ++ + V +  SF N + KWI E+R        I+LVG + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK-HNPKAPIILVGTQADLRTD 119

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                      ++ VS    +A + ++    +IE SA    N+K
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLK 163

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 88.7 bits (220), Expect = 8e-23
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+ + F  +Y  TI  D   K + ++ R   L++ DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
           +F ++   YI+     ++VY V S  S     +  ++V R +   +V +VLVGNK DL +
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 129 KRQVSIEEGEAKSRELN-VMFIETSAKAGFNI 159
            RQVS E+G + S++   V F ETSA+   N+
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNV 152

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 88.5 bits (220), Expect = 9e-23
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 5/150 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +F  L   Y      A++++DV SR ++ N   W  ++      ++ IVL GNK D+ ++
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 119

Query: 130 RQVSIEEGEAKS-RELNVMFIETSAKAGFN 158
           +   ++  +    R+ N+ + E SAK+ +N
Sbjct: 120 K---VKPKQITFHRKKNLQYYEISAKSNYN 146

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 86.6 bits (214), Expect = 1e-21
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 13/151 (8%)

Query: 15  LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 75  IPSYIRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133
              Y      A++++DV +R ++ N   W  D VR     ++ IVL GNK D V+ R+V 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-VKDRKV- 116

Query: 134 IEEGEAKS----RELNVMFIETSAKAGFNIK 160
               +AKS    R+ N+ + + SAK+ +N +
Sbjct: 117 ----KAKSITFHRKKNLQYYDISAKSNYNFE 143

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 85.1 bits (211), Expect = 2e-21
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            K+V +GD +VGK++++ R + +K   T Y+     ++++  +  + +T +  L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL 126
           E + ++   Y R    ++ V+D+            K   E+     S V I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +  ++        ++      I  SA+ G NI
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNI 153

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 85.7 bits (212), Expect = 3e-21
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 3/151 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +LVF+G   VGKT++I RF+YD F+  ++ T+  +  SK   +    V + + DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
           F ++    I++     +VY V   +SF    +  +E+   +    V IV+VGNK D + +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 130 RQVSIEEGEAKSR-ELNVMFIETSAKAGFNI 159
           RQV   +  +    + N  F+E SAK   N+
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENV 150

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 85.3 bits (211), Expect = 3e-21
 Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 18/157 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V LGD + GKTS++  F    F   Y+ T+  +++   ++++   V L LWDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYI-HDIFVDGLAVELSLWDTAGQEE 60

Query: 71  F---RSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL 126
           F   RSL  SY  D+ V ++ + V +  S  N  SKW+ E+R      V +VLV  K DL
Sbjct: 61  FDRLRSL--SY-ADTHVIMLCFSVDNPDSLENVESKWLAEIR-HHCPGVKLVLVALKCDL 116

Query: 127 VEKRQV--------SIEEGEAKSRELN-VMFIETSAK 154
            E R          S EEG A ++ +N   ++E SAK
Sbjct: 117 REPRNERDRGTHTISYEEGLAVAKRINACRYLECSAK 153

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 84.0 bits (208), Expect = 6e-21
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 16/158 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++  F  D+F   Y  T+  +++   + ++ + V L LWDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG A + ++    ++E SAK
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAK 158

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 83.5 bits (207), Expect = 8e-21
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 6/153 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQE 69
           KL+ +G   VGKTS+  + + +KFD    +T GI+     +   +R  +RL +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK--WIDEVRTERGSDVIIVLVGNKTDLV 127
            + +    ++   S+ ++V+D   R     +    W+ +++   G    ++LVG   D  
Sbjct: 63  IYHATHQFFLTSRSLYLLVFD--LRTGDEVSRVPYWLRQIKA-FGGVSPVILVGTHIDES 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
               +  +    K   +       S K G  I 
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 83.3 bits (206), Expect = 9e-21
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKSICTLQITDTTGSH 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD---VIIVLVGNKTDL 126
           +F ++    I      ++VY + S+QS        + +   +G++   + I+LVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
              R+VS  EG A +R  N  F+ETSAK   N++     L
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 82.4 bits (204), Expect = 3e-20
 Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LGD  +GKTS++ +++  +FD  Y  T+G++F+ KT+ +    +   +WD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL---- 126
           F +++P   +D+   + ++D+  + +  +  +W  + R    +  I +LVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT-AIPILVGTKYDLFADL 120

Query: 127 -VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             E+++   ++    ++ +    I  S     N+
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINV 154

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 80.5 bits (199), Expect = 4e-20
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD+  GK+S++++ +  +F        G      T+ ++  T  L +WD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKT 124
            +     +++ +   ++VYD+  R+S         W+  +R + G  + ++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLR-KLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 79.1 bits (195), Expect = 4e-19
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTD---- 125
           +  L P     + V ++ + + S  SF N   KW  EVR     +  I+LVG K D    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 120

Query: 126 ------LVEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                 L EK+   ++  +G A ++E+  V ++E SA     +K
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 164

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 78.7 bits (194), Expect = 9e-19
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKTS++  F   +F   Y  T+  ++++    ++ + V+L LWDTAGQ
Sbjct: 1   RRKLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P     + V ++ + + +  S  N  +KWI+EVR     +V ++LVG K DL 
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLR 118

Query: 128 EK----------RQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           ++            V I++ +  +R +    ++E SA  G  +
Sbjct: 119 QEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGV 161

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 77.2 bits (190), Expect = 3e-18
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 14/162 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R + V ++ + + S+ S+ N   KWI E+R      V IVLVG K DL + 
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIVLVGTKLDLRDD 120

Query: 130 RQ----------VSIEEGEAKSRELNV-MFIETSAKAGFNIK 160
           +Q          ++  +GE   +++    +IE S+K   N+K
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVK 162

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LG   VGKT+I++RF+  +F+  Y  TI  DF  K   +     +L + DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSF---------LNTSKWIDEVRTERGSDVIIVLV 120
            F ++    I    V ++V+ + +R+SF         +  +K   + +T+    + +V+ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 121 GNKTDLVEKRQVSIEEGEA-KSRELNVMFIETSAKAGFNIKLCCHTLNSL 169
           GNK D    R+V  +E E     + N  + E SAK   N+      L SL
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSL 169

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 72.3 bits (177), Expect = 2e-16
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 22/160 (13%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE- 69
           K V +GD +VGKT ++  +  + F   Y  T+  D  S    ++ RTV L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 70  --RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTD- 125
             R R+L  SY + ++V ++ + +AS  S+ N   KW  EV      +V I+LVG K D 
Sbjct: 64  YDRLRTL--SYPQ-TNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDL 119

Query: 126 ---------LVEKRQVSI--EEGEAKSRELN-VMFIETSA 153
                    L E+ Q  I  ++G A +++++ V ++E SA
Sbjct: 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 16/158 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTD---- 125
           + ++ P    DS   ++ +D++  ++  +   KW  EVR E   +  ++LVG K+D    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCPNTPVLLVGCKSDLRTD 120

Query: 126 ------LVEKRQ--VSIEEGEAKSRELN-VMFIETSAK 154
                 L  KRQ  VS E+G   ++++    ++E SAK
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAK 158

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 68.4 bits (167), Expect = 6e-15
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 16/157 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P     + V +V + V S  SF N   KW+ E+ T        +LVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 120

Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E GE  +R+L  V ++E SA
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +   T   TIG  F  +T  +  + V+  +WD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  R L  +Y  ++   + V D A R       + +  +   E  +D  ++++ NK DL 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128

Query: 128 E 128
            
Sbjct: 129 G 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ +    +   T   TIG  F  +T  +E + V+  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVET--VEYKNVKFTVWDVGGQDK 55

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
            R L   Y  ++   + V D + R+        + ++   E      ++++ NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 130 RQVS-IEE--GEAKSRELNVMFIETSAKAG 156
              S + E  G    +         SA  G
Sbjct: 116 LTESELIELLGLESIKGRRWHIQPCSAVTG 145

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 63.5 bits (154), Expect = 9e-13
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 16/166 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P   + + KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 6   NPQPLVVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 64

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLV 120
           LWDT+G   + ++ P    DS   ++ +D++  + F +   KW  E+  +      I+L+
Sbjct: 65  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI-LDYCPSTRILLI 123

Query: 121 GNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           G KTDL             ++  +S E+G A +++L    ++E SA
Sbjct: 124 GCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSA 169

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 42/157 (26%), Positives = 82/157 (52%), Gaps = 16/157 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P     + V ++ + V +  SF N   +W+ E++ E   +V  +L+G + DL   
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPYLLIGTQIDLRDD 119

Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSA 153
                    ++++ +++E+G+  ++E+    ++E SA
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSA 156

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD----- 64
            ++  LG   VGKT+I+ +F+  +F   Y  T         + L  R   L + D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 65  ----TAGQE----RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS---KWIDEVRTERGS 113
               TAGQE    RFR L     R+S   ++VYD+ S  SF       + I E R     
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 114 DVIIVLVGNKTDLVEKR 130
           +  IV+VGNK D    R
Sbjct: 116 EPPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 20/160 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DNTY----QATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++V +GD+ VGK+S+I   + ++F +N      + TI  D        E     +   DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-----ERVPTTIV--DT 56

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           + + + R+ + + IR ++V  +VY V    +     +KW+  +R      V I+LVGNK+
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 125 DLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFNI 159
           DL +    +  E E      + RE+    +E SAK   N+
Sbjct: 116 DLRDGSSQAGLEEEMLPIMNEFREIET-CVECSAKTLINV 154

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 58.5 bits (141), Expect = 4e-11
 Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 5   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 63

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL- 126
             + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++LVG K+DL 
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 122

Query: 127 ------VE-----KRQVSIEEGEAKSRELNVM-FIETSAKAGFN 158
                 VE     +  VS ++G   ++++    +IE SA    N
Sbjct: 123 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D +  +Y  T+  ++ + +  ++   + L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNK----T 124
           + ++ P    DS   ++ +D+ SR   L+    KW  E + E   +  +VLVG K    T
Sbjct: 62  YDNVRPLAYPDSDAVLICFDI-SRPETLDSVLKKWQGETQ-EFCPNAKLVLVGCKLDMRT 119

Query: 125 DLVEKRQ--------VSIEEGEAKSRELN-VMFIETSAKAGFN 158
           DL   R+        V+ E+G   +R+L  V ++E S++   N
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 28/163 (17%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68
           +V LG  S GKT+++ R  +++F NT   T G  F ++ + +     + V    WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTV-PTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-----RGSD---VIIVLV 120
           E+ R L  SY R +   V V D           + ++E +TE     + S+   V ++++
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVD-------VERMEEAKTELHKITKFSENQGVPVLVL 115

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163
            NK DL     + + E E K   L+    E S+   ++++  C
Sbjct: 116 ANKQDL--PNALPVSEVE-KLLALH----ELSSSTPWHVQPAC 151

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 49.6 bits (118), Expect = 8e-08
 Identities = 53/190 (27%), Positives = 74/190 (38%), Gaps = 46/190 (24%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-------GID-FLSKTMYLE------- 54
            K V +GD +VGKT +I     +K    YQ           ID +      LE       
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 55  DRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRT 109
             +V L+LWDT G      RF     +Y R S V ++ + +AS  S  N    W  E+R 
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPEIR- 115

Query: 110 ERGSDVIIVLVGNKTDL-------------------VEKRQVSIEEGEAKSRELNVMFIE 150
                V ++LVG K DL                        +  E G A ++EL + + E
Sbjct: 116 HFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYE 175

Query: 151 TSAKAGFNIK 160
           TS    F +K
Sbjct: 176 TSVVTQFGVK 185

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  S GK++++ +  + +   T   T+G  F  + + LE + + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTI-PTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
            R++   Y+ ++   V V D +       + K +  + + E    V +VL+ NK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 48/159 (30%), Positives = 66/159 (41%), Gaps = 28/159 (17%)

Query: 15  LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +G Q+ GKT+++      +F      T+G +    T       V +++WD  GQ RFRS+
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTK----GNVTIKVWDLGGQPRFRSM 60

Query: 75  IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII--------VLV-GNKTD 125
              Y R  +  V V D A R+          EV      D++         +LV GNK D
Sbjct: 61  WERYCRGVNAIVYVVDAADREKL--------EVAKNELHDLLEKPSLEGIPLLVLGNKND 112

Query: 126 LVEKRQVS--IEEGEAKS---RELNVMFIETSAKAGFNI 159
           L     V   IE+   KS   RE  V     SAK   NI
Sbjct: 113 LPGALSVDELIEQMNLKSITDRE--VSCYSISAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 8  AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           +YK++ +G  + GKT+I+ +F+  +  +T   TIG    S    +  + +R  +WD  G
Sbjct: 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIG----SNVEEIVYKNIRFLMWDIGG 68

Query: 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSF 97
          QE  RS   +Y  ++   ++V D   R+  
Sbjct: 69 QESLRSSWNTYYTNTDAVILVIDSTDRERL 98

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+VFLG  + GKT+++     D+    +  T+       +  L    V+   +D  G E+
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH----PTSEELTIGNVKFTTFDLGGHEQ 75

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
            R +   Y  +    V + D A  + F  + + +D +   E  ++V I+++GNK D    
Sbjct: 76  ARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK--P 133

Query: 130 RQVSIEE 136
             VS EE
Sbjct: 134 GAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           ++V LG    GKT+I+ +   D+F    Q    I F  +T  +E + ++  +WD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF---MQPIPTIGFNVET--VEYKNLKFTIWDVGGKHK 55

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEK 129
            R L   Y  ++   V V D + R         + ++ TE+   D ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDV--A 113

Query: 130 RQVSIEE 136
             +S+EE
Sbjct: 114 GALSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 20/124 (16%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 65

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y   +   + V D A R         IDE R E           D ++++  N
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQELHRIINDREMRDALLLVFAN 118

Query: 123 KTDL 126
           K DL
Sbjct: 119 KQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 58  VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVI 116
            RL  WD  GQE  RSL   Y  +S   + V D   R+ F  +    ++V   E    V 
Sbjct: 51  ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVP 110

Query: 117 IVLVGNKTDL-----VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164
           ++++ NK DL     V + +   ++  A     + +    SA  G  ++    
Sbjct: 111 LLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIE 163

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +   T   TIG +  +    +  + +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y  ++   + V D   R         IDE R E           D +I++  N
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDR-------IDEAREELHRMLNEDELRDAVILVFAN 122

Query: 123 KTDLVE 128
           K DL +
Sbjct: 123 KQDLPD 128

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMY------------DKFDNTYQATIGIDFLSKTMYLEDRTV 58
           K+V +G    GKT+ +                          T+ +DF S  +   + T 
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD--EDTG 69

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV 118
            + L+ T GQERF+ +     R +  A+V+ D +SR    +  + ID + +     V++ 
Sbjct: 70  -VHLFGTPGQERFKFMWEILSRGAVGAIVLVD-SSRPITFHAEEIIDFLTSRNPIPVVVA 127

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
           +  NK DL +           K   L+V  IE  A  G
Sbjct: 128 I--NKQDLFDALPPEKIREALKLELLSVPVIEIDATEG 163

Length = 187

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 31/147 (21%)

Query: 11  KLVFLGDQSVGKTS----IITRFMYDKFDNTYQATIGIDFL---------SKTMYLEDRT 57
           +++ +GD  VGK+S    I+      +   T   T+G+  +         +      +R 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 58  VRLQLWDTAGQERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--- 111
             ++LWD +G ER+   RSL  S I      + V+D++ R++  +  KW  EV       
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQING---VIFVHDLSQRRTKTSLQKWASEVAATGTFS 139

Query: 112 ---------GSDVIIVLVGNKTDLVEK 129
                    G  V  +++GNK D+  K
Sbjct: 140 APLGSGGPGGLPVPYIVIGNKADIAPK 166

Length = 334

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 41/175 (23%)

Query: 11  KLVFLGDQSVGKTSIITRFM-------YDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           K+  +G  +VGK+S+I   +        D       A    D +      + R   L   
Sbjct: 180 KIAIIGRPNVGKSSLINAILGEERVIVSD------IAGTTRDSIDIEFERDGRKYVL--I 231

Query: 64  DTAG----------QERFRSL--IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER 111
           DTAG           E++     + + I  + V ++V D    +        I  +  E 
Sbjct: 232 DTAGIRRKGKITESVEKYSVARTLKA-IERADVVLLVIDA--TEGISEQDLRIAGLIEEA 288

Query: 112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-------NVMFIETSAKAGFNI 159
           G  ++IV+  NK DLVE+ + ++EE + K R          ++FI  SA  G  +
Sbjct: 289 GRGIVIVV--NKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI--SALTGQGL 339

Length = 444

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 14/123 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-------IDFLSKTMYLEDRTVRLQLW 63
           K++ LGD  VGK+S++     ++       T+G         +   T   E++T  ++LW
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTP--EEKTFYVELW 59

Query: 64  DTAGQ----ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVL 119
           D  G     E  +S    +    +  + V+D+ +++S  N  +W  E    R +    +L
Sbjct: 60  DVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEA-LNRDTFPAGLL 118

Query: 120 VGN 122
           V N
Sbjct: 119 VTN 121

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 17/96 (17%)

Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVR------LQLWD 64
          K++ +G +  GK+S+ +      F N Y        L  T+ +E   VR      L LWD
Sbjct: 1  KVLLMGLRGSGKSSMRSII----FSN-YSPR-DTLRLGATIDVEQSHVRFLGNLTLNLWD 54

Query: 65 TAGQERFRSLIPSYIRD---SSVAVVVY--DVASRQ 95
            GQ+ F     +  ++   S+V V++Y  DV SR+
Sbjct: 55 CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE 90

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 25/128 (19%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERF 71
           + LG    GKT++ T+    K  +T  +   I+    + Y    +  +L L D  G E+ 
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTS---IEPNVASFYSNSSKGKKLTLVDVPGHEKL 60

Query: 72  RSLIPSYIRDSSVAVV-VYDVASRQS------------FLNTSKWIDEVRTERGSDVIIV 118
           R  +  Y++ S  A+V V D A+ Q               +  K  +++         I+
Sbjct: 61  RDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIP--------IL 112

Query: 119 LVGNKTDL 126
           +  NK DL
Sbjct: 113 IACNKQDL 120

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ + +  +  +    T G +  +    ++    +L +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQ-LASEDISHITPTQGFNIKN----VQADGFKLNVWDIGGQRK 71

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV-GNKTDLVE 128
            R    +Y  ++ V + V D A R+ F    + + E+  E     + VLV  NK DL+ 
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT 130

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +F   +  +T   T+G  F  KT  LE    +L +WD  GQ+ 
Sbjct: 16  RILMLGLDNAGKTTILKKFN-GEDISTISPTLG--FNIKT--LEYNGYKLNIWDVGGQKS 70

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDL 126
            RS   +Y   +   + V D + R    +  + + ++  E    G+ ++I    NK DL
Sbjct: 71  LRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFA--NKQDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.98
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.98
PTZ00133	182	ADP-ribosylation factor; Provisional	99.98
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.98
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.98
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.97
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.97
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.97
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.97
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.97
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.97
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.97
PTZ00099	176	rab6; Provisional	99.97
PLN00023	334	GTP-binding protein; Provisional	99.97
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.96
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.96
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.95
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.95
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.95
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.95
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.94
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.94
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.94
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.93
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.92
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.91
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.91
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.91
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.91
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.91
KOG1673	205	consensus Ras GTPases [General function prediction	99.91
cd00881	189	GTP_translation_factor GTP translation factor fami	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
PRK11058	426	GTPase HflX; Provisional	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.9
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.9
CHL00189	742	infB translation initiation factor 2; Provisional	99.89
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.89
PRK05306	787	infB translation initiation factor IF-2; Validated	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.89
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.89
PRK12298	390	obgE GTPase CgtA; Reviewed	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
PRK05433	600	GTP-binding protein LepA; Provisional	99.89
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.88
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.88
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.87
PRK12317	425	elongation factor 1-alpha; Reviewed	99.87
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.86
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.86
COG1159	298	Era GTPase [General function prediction only]	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.85
COG2229	187	Predicted GTPase [General function prediction only	99.85
PRK10218	607	GTP-binding protein; Provisional	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.84
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.83
PRK04004	586	translation initiation factor IF-2; Validated	99.83
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.83
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.83
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.83
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.81
PRK12736	394	elongation factor Tu; Reviewed	99.8
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.8
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.8
PRK12735	396	elongation factor Tu; Reviewed	99.8
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.79
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.78
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.78
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.78
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.77
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.77
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.76
CHL00071	409	tufA elongation factor Tu	99.76
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.75
PLN00043	447	elongation factor 1-alpha; Provisional	99.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.75
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.75
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.75
COG2262	411	HflX GTPases [General function prediction only]	99.74
COG1084	346	Predicted GTPase [General function prediction only	99.74
PLN03126	478	Elongation factor Tu; Provisional	99.74
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.74
PTZ00141	446	elongation factor 1- alpha; Provisional	99.73
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.73
PRK00049	396	elongation factor Tu; Reviewed	99.73
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.73
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.73
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.72
PLN03127	447	Elongation factor Tu; Provisional	99.72
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.72
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.72
KOG1145	683	consensus Mitochondrial translation initiation fac	99.71
PRK13351	687	elongation factor G; Reviewed	99.7
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.7
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.69
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.69
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
COG0536	369	Obg Predicted GTPase [General function prediction	99.67
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.65
PRK12739	691	elongation factor G; Reviewed	99.64
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.64
COG3596	296	Predicted GTPase [General function prediction only	99.63
COG1163	365	DRG Predicted GTPase [General function prediction	99.62
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.62
PRK12740	668	elongation factor G; Reviewed	99.58
PRK00007	693	elongation factor G; Reviewed	99.58
PRK09602	396	translation-associated GTPase; Reviewed	99.58
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.57
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.57
PRK09866	741	hypothetical protein; Provisional	99.57
PRK14845	1049	translation initiation factor IF-2; Provisional	99.56
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.56
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.56
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.55
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.55
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.55
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.55
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.54
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.54
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.54
KOG0090	238	consensus Signal recognition particle receptor, be	99.52
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.52
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.52
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.5
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.47
PRK13768	253	GTPase; Provisional	99.47
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.46
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.46
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.45
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.44
PTZ00416	836	elongation factor 2; Provisional	99.43
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.41
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.41
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.41
PTZ00258	390	GTP-binding protein; Provisional	99.4
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.39
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.38
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.38
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.36
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.36
PRK07560	731	elongation factor EF-2; Reviewed	99.36
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.36
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.35
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.34
PRK09601	364	GTP-binding protein YchF; Reviewed	99.34
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.34
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.34
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.31
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.31
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.3
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.29
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.29
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.28
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.25
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.23
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.23
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.22
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.21
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.2
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.19
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.18
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.18
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.17
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.14
PRK12289	352	GTPase RsgA; Reviewed	99.09
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.08
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.07
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.07
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.05
KOG0410	410	consensus Predicted GTP binding protein [General f	99.04
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.02
PRK00098	298	GTPase RsgA; Reviewed	99.01
KOG0460	449	consensus Mitochondrial translation elongation fac	98.98
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.97
PRK12288	347	GTPase RsgA; Reviewed	98.97
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.92
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.89
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.88
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.87
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.83
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.79
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.79
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.78
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.77
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.77
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.77
KOG2486	320	consensus Predicted GTPase [General function predi	98.77
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.76
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.75
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.74
KOG1143	591	consensus Predicted translation elongation factor	98.74
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.74
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.72
COG1161	322	Predicted GTPases [General function prediction onl	98.69
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.67
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.66
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.64
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.61
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.61
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.6
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.59
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.58
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.57
PRK10416	318	signal recognition particle-docking protein FtsY;	98.56
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.55
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.54
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.54
PRK14974	336	cell division protein FtsY; Provisional	98.52
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.52
PRK12288	347	GTPase RsgA; Reviewed	98.51
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.51
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.51
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.5
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.5
cd03112	158	CobW_like The function of this protein family is u	98.49
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.48
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.47
PRK01889	356	GTPase RsgA; Reviewed	98.44
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.44
PRK12289	352	GTPase RsgA; Reviewed	98.41
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.41
PRK13796	365	GTPase YqeH; Provisional	98.39
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.39
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.38
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.37
PRK13796	365	GTPase YqeH; Provisional	98.35
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.34
COG3523	1188	IcmF Type VI protein secretion system component Va	98.34
COG1162	301	Predicted GTPases [General function prediction onl	98.34
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.33
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.3
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	98.29
COG1162	301	Predicted GTPases [General function prediction onl	98.28
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.26
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.23
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.22
PRK00098	298	GTPase RsgA; Reviewed	98.19
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.19
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.18
COG0523	323	Putative GTPases (G3E family) [General function pr	98.15
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.12
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.1
PRK13695	174	putative NTPase; Provisional	98.1
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.09
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.09
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.03
KOG2484	435	consensus GTPase [General function prediction only	97.99
cd03114	148	ArgK-like The function of this protein family is u	97.99
PRK10867	433	signal recognition particle protein; Provisional	97.98
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.97
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.96
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.96
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.95
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.92
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.91
TIGR00959	428	ffh signal recognition particle protein. This mode	97.91
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.9
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.9
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.81
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.81
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.81
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.76
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.75
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.75
PRK08118	167	topology modulation protein; Reviewed	97.74
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.73
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.72
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.69
PRK07261	171	topology modulation protein; Provisional	97.69
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.68
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.67
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.66
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.66
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.64
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.61
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.6
cd03111	106	CpaE_like This protein family consists of proteins	97.6
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.59
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.59
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.59
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.57
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.56
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.52
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.52
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.52
PRK10646	153	ADP-binding protein; Provisional	97.49
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.48
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.48
smart00382	148	AAA ATPases associated with a variety of cellular	97.47
PRK14530	215	adenylate kinase; Provisional	97.47
COG0802	149	Predicted ATPase or kinase [General function predi	97.45
PTZ00088	229	adenylate kinase 1; Provisional	97.45
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.43
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.42
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.42
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.41
PRK08233	182	hypothetical protein; Provisional	97.4
PRK06217	183	hypothetical protein; Validated	97.4
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.4
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.4
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.4
PRK05480	209	uridine/cytidine kinase; Provisional	97.4
PRK03839	180	putative kinase; Provisional	97.38
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.37
PF00004	132	AAA: ATPase family associated with various cellula	97.37
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.35
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.34
PRK14737	186	gmk guanylate kinase; Provisional	97.33
PRK14531	183	adenylate kinase; Provisional	97.33
PRK13949	169	shikimate kinase; Provisional	97.33
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.32
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.32
PRK14738	206	gmk guanylate kinase; Provisional	97.32
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.32
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.32
PLN02200	234	adenylate kinase family protein	97.29
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.29
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.29
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.28
PRK14532	188	adenylate kinase; Provisional	97.28
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.27
PRK05541	176	adenylylsulfate kinase; Provisional	97.26
cd03110	179	Fer4_NifH_child This protein family's function is	97.26
PRK01889	356	GTPase RsgA; Reviewed	97.26
PRK00300	205	gmk guanylate kinase; Provisional	97.26
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.26
PRK13851	344	type IV secretion system protein VirB11; Provision	97.24
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.24
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.23
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.22
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.22
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.21
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.21
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.19
PRK02496	184	adk adenylate kinase; Provisional	97.18
PRK14527	191	adenylate kinase; Provisional	97.17
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.16
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.16

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-44  Score=238.46  Aligned_cols=168  Identities=42%  Similarity=0.681  Sum_probs=162.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ..-+||+++|+.|+|||+|+.|+....+.+.+..|.++++....+..++..+++++|||+|+++|+.+..+|++++|++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe-EEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||+++.+||..+..|+.++.++...++|.++|+||+|+.+.+.+..++++.|+.+++++ ++++||+++.++++.|..
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998 999999999999999999


Q ss_pred             HHHHHhhhh
Q 030524          166 LNSLITVCI  174 (175)
Q Consensus       166 l~~~~~~~~  174 (175)
                      |...+....
T Consensus       167 la~~lk~~~  175 (205)
T KOG0084|consen  167 LAKELKQRK  175 (205)
T ss_pred             HHHHHHHhc
Confidence            988876653

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-42  Score=230.81  Aligned_cols=168  Identities=45%  Similarity=0.724  Sum_probs=162.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ...-+||+++|++|||||+++.++..+.+...+..|.++++....+.+++..+.+++|||+|+++|+.+...|++.++++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      ++|||+++..+|+++..|+..+..+...++|.++|+||+|+...+++..+.++++|.++|++|+++||++|.||++.|..
T Consensus        89 ~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~  168 (207)
T KOG0078|consen   89 LLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLS  168 (207)
T ss_pred             EEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 030524          166 LNSLITVC  173 (175)
Q Consensus       166 l~~~~~~~  173 (175)
                      |.+.+..+
T Consensus       169 La~~i~~k  176 (207)
T KOG0078|consen  169 LARDILQK  176 (207)
T ss_pred             HHHHHHhh
Confidence            99998754

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-41  Score=221.90  Aligned_cols=167  Identities=40%  Similarity=0.765  Sum_probs=160.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+|++++|..++|||||+-|+..+.+.+...+|++.-+..+.+.+++..+++.||||+|+++|.++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||+++.+||..++.|++++....++++-+.++|||+|+.+.+++..+++..+|...+..++++||++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+...
T Consensus       163 a~~lp~~  169 (200)
T KOG0092|consen  163 AEKLPCS  169 (200)
T ss_pred             HHhccCc
Confidence            9987543

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-41  Score=221.33  Aligned_cols=166  Identities=80%  Similarity=1.161  Sum_probs=158.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.+|++++|+.++||||||+|++.+.+..+|.+|+++++......+.+..+.+++|||+|+++|+.+...|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||++|..+|+...+|++.+..+.+. ++.+++|+||.||.+.+++...+.+..|+++++.|+++|++.|.||+++|..
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            999999999999999999999999885 5889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030524          166 LNSLITV  172 (175)
Q Consensus       166 l~~~~~~  172 (175)
                      +...+..
T Consensus       180 Iaa~l~~  186 (221)
T KOG0094|consen  180 IAAALPG  186 (221)
T ss_pred             HHHhccC
Confidence            7766543

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.7e-41  Score=214.86  Aligned_cols=166  Identities=40%  Similarity=0.693  Sum_probs=159.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|.+|+|||||+.++..+.+.+....+.++++..+...+++..+++.+|||+|+++|+.+...|++.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||++.+++|..+..|++++..++. +++..++|+||.|...++.++..+...||+++++-|+++||++.++|..+|+.
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee  168 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE  168 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence            99999999999999999999999986 77888899999998888999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030524          166 LNSLITV  172 (175)
Q Consensus       166 l~~~~~~  172 (175)
                      ++++|++
T Consensus       169 lveKIi~  175 (209)
T KOG0080|consen  169 LVEKIIE  175 (209)
T ss_pred             HHHHHhc
Confidence            9999875

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-41  Score=219.20  Aligned_cols=168  Identities=37%  Similarity=0.661  Sum_probs=161.4

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....+|.+++|+.|||||+|+.+++.+.+.+.+..|.++++....+.++++.+++++|||+|++.|++..+.|++.+-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      |+|||++++++|..+..|+..+..+...+..+++++||+|+...+++..++.+.||+++++.++++||+++++++|.|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 030524          166 LNSLITVC  173 (175)
Q Consensus       166 l~~~~~~~  173 (175)
                      ....|..+
T Consensus       163 ta~~Iy~~  170 (216)
T KOG0098|consen  163 TAKEIYRK  170 (216)
T ss_pred             HHHHHHHH
Confidence            88877654

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.6e-39  Score=224.91  Aligned_cols=164  Identities=35%  Similarity=0.622  Sum_probs=151.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +.|+++|+.|||||||+++++.+.+..++.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999999998888999998988888889999999999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      |++++++|+.+..|+..+......+.|+++|+||+|+.+.+++...++++++++. ++.++++||++|.|++++|.++.+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887776678999999999999888888888999999885 789999999999999999999998


Q ss_pred             HHhhh
Q 030524          169 LITVC  173 (175)
Q Consensus       169 ~~~~~  173 (175)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            87654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=9.1e-40  Score=213.75  Aligned_cols=173  Identities=36%  Similarity=0.600  Sum_probs=161.0

Q ss_pred             CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 030524            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (175)
Q Consensus         1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (175)
                      |++..+...+||+++|++|+|||||++++..+++...+..+++.++..+++.+++..+++++|||+|+++|+++-..+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            56666777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC--CCCCCHHHHHHHHHhcC-CeEEEecc
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE--KRQVSIEEGEAKSRELN-VMFIETSA  153 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~s~  153 (175)
                      .+|+++++||++++.+|+.+..|..++..+..    ..-|+++++||.|+..  .++++...+..+++..| +||+++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999999876    4578999999999865  38899999999999886 79999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhh
Q 030524          154 KAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~~~  173 (175)
                      +...||.+.|..+...+..+
T Consensus       161 K~~~NV~~AFe~ia~~aL~~  180 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALAN  180 (210)
T ss_pred             cccccHHHHHHHHHHHHHhc
Confidence            99999999999998877654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=8.5e-39  Score=219.37  Aligned_cols=164  Identities=34%  Similarity=0.595  Sum_probs=152.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|..|+|||||+.++..+.+..++.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            45999999999999999999999988887888888888888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++++|+.+..|+.++.... ++.|+++|+||.|+.+.+++..++++.+++.+++++++|||++|.|++++|.++.
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~  163 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA  163 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999999997765 6899999999999988888889999999999999999999999999999999999


Q ss_pred             HHHhh
Q 030524          168 SLITV  172 (175)
Q Consensus       168 ~~~~~  172 (175)
                      +.+..
T Consensus       164 ~~i~~  168 (189)
T cd04121         164 RIVLM  168 (189)
T ss_pred             HHHHH
Confidence            87754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=7.2e-38  Score=211.46  Aligned_cols=164  Identities=34%  Similarity=0.629  Sum_probs=151.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            37999999999999999999999988888888888888777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++|+.+..|+..+.....++.|+++++||+|+.+.+.....++..+++..+++++++||++|.|+.++|..+.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776678999999999999888888888999999999999999999999999999999998


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+..
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-38  Score=211.49  Aligned_cols=166  Identities=37%  Similarity=0.692  Sum_probs=160.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .-+||+++|++++|||-|+.|+..+.+..+..+|.++++....+.++++.++.+||||+|+++|+.....|++.+.++++
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll   92 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   92 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++.+.+|+.+.+|+.+++.+..+++++++|+||+||.+.+.+..++++.++...+..|+++||..+.+|+++|..++
T Consensus        93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l  172 (222)
T KOG0087|consen   93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL  172 (222)
T ss_pred             EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhhh
Q 030524          168 SLITVC  173 (175)
Q Consensus       168 ~~~~~~  173 (175)
                      ..|...
T Consensus       173 ~~I~~~  178 (222)
T KOG0087|consen  173 TEIYKI  178 (222)
T ss_pred             HHHHHH
Confidence            887654

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.4e-37  Score=212.37  Aligned_cols=163  Identities=25%  Similarity=0.474  Sum_probs=146.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||+++++.+.+..++.++.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999998888888887544 466778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEec
Q 030524           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS  152 (175)
Q Consensus        87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  152 (175)
                      +|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..++++++++++++ +|++||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 78999988765 5799999999999854            346889999999999996 999999


Q ss_pred             cCCCCC-HHHHHHHHHHHHh
Q 030524          153 AKAGFN-IKLCCHTLNSLIT  171 (175)
Q Consensus       153 ~~~~~~-v~~~f~~l~~~~~  171 (175)
                      |++|+| ++++|..+.+.+.
T Consensus       161 Ak~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         161 ALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            999998 9999999888654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.7e-37  Score=210.68  Aligned_cols=165  Identities=33%  Similarity=0.482  Sum_probs=148.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|.+|+|||||++++..+.+...+.++.+. .+...+.+++..+.+.+||++|++++..++..++.++|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED-AYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc-eEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            579999999999999999999999888788888863 3455677888889999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+++...++..+++++++++++|||++|.|++++|.++.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999998887776543 6799999999999987778888899999999999999999999999999999999


Q ss_pred             HHHhhhh
Q 030524          168 SLITVCI  174 (175)
Q Consensus       168 ~~~~~~~  174 (175)
                      +.+..+.
T Consensus       161 ~~~~~~~  167 (172)
T cd04141         161 REIRRKE  167 (172)
T ss_pred             HHHHHhc
Confidence            8887654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.8e-37  Score=207.59  Aligned_cols=160  Identities=38%  Similarity=0.654  Sum_probs=148.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      ++|+++|++|+|||||+++++.+.+.+.+.++.+.++....+.+++..+.+.+||++|++++...+..++.++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999888888899888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++++|+.+..|+..+......+.|+++++||.|+.+.+.+..+++..+++.++++++++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999987765689999999999998888888899999999999999999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3e-37  Score=209.57  Aligned_cols=160  Identities=34%  Similarity=0.568  Sum_probs=144.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+.+++.+.+..++.++.+..+ ...+..++..+.+.+|||+|+++|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888999987554 556778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC----------CCCHHHHHHHHHhcCC-eEEEeccCCCC
Q 030524           90 DVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------QVSIEEGEAKSRELNV-MFIETSAKAGF  157 (175)
Q Consensus        90 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (175)
                      |++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.+          .+...++..+++.+++ +|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987665 579999999999996543          4788899999999998 69999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 030524          158 NIKLCCHTLNSLIT  171 (175)
Q Consensus       158 ~v~~~f~~l~~~~~  171 (175)
                      |++++|..+.+.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998653

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-38  Score=199.57  Aligned_cols=166  Identities=37%  Similarity=0.672  Sum_probs=159.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+|+.++|+..+||||++.++++..+.+.+.++.++++..+++....+.+++++|||+|+++|+.+...++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            35799999999999999999999999999999999999999988888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      +||++|.++|..++.|.-.+..++..+.|+|+++||||+..++.+..+..+.++.++|..|+++|++.+.|++.+|..++
T Consensus       100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv  179 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV  179 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 030524          168 SLITVC  173 (175)
Q Consensus       168 ~~~~~~  173 (175)
                      ..|+.+
T Consensus       180 ~~Ic~k  185 (193)
T KOG0093|consen  180 DIICDK  185 (193)
T ss_pred             HHHHHH
Confidence            988765

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.7e-38  Score=200.95  Aligned_cols=163  Identities=40%  Similarity=0.696  Sum_probs=156.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      ++.+++|++|+|||+|+.++..+.+...|.-+.++++...++.++|..+++.|||++|+++|+.+...|++..+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++|.+||.++++|++++..+++ .+|-++|+||.|..+.+.+...+++.+|...|+.+|++|++.+++++..|..|.+.
T Consensus        89 DVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence            99999999999999999999885 89999999999999999999999999999999999999999999999999998877


Q ss_pred             Hhhh
Q 030524          170 ITVC  173 (175)
Q Consensus       170 ~~~~  173 (175)
                      ....
T Consensus       168 vl~~  171 (198)
T KOG0079|consen  168 VLQA  171 (198)
T ss_pred             HHHH
Confidence            6543

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=5.1e-37  Score=207.12  Aligned_cols=163  Identities=37%  Similarity=0.684  Sum_probs=149.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777777777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++++++.+..|+..+......+.|+++++||+|+.+.+.....+..+++..++++++++||++|.|+.++|+++.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766689999999999998777777888888999999999999999999999999999987


Q ss_pred             Hhh
Q 030524          170 ITV  172 (175)
Q Consensus       170 ~~~  172 (175)
                      +..
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=4.9e-37  Score=207.57  Aligned_cols=164  Identities=43%  Similarity=0.728  Sum_probs=151.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            58999999999999999999999998888899998888777888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++|+.+..|+..+......+.|+++++||+|+.+.+....+++..++..++++++++||++|.|++++|.++.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  162 (167)
T cd01867          83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK  162 (167)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876678999999999999877777888888999999999999999999999999999998


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+..
T Consensus       163 ~~~~  166 (167)
T cd01867         163 DIKK  166 (167)
T ss_pred             HHHh
Confidence            8754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-38  Score=199.94  Aligned_cols=166  Identities=37%  Similarity=0.645  Sum_probs=160.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      -+|++++|+.|+|||+|++++..+.+..+...+.++++....+.+.++.+++++|||+|+++|++..+.|++.+-+.++|
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV   88 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   88 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence            48999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++|..+..|+...+....+++-+++++||.|+.+++++...++..|+.+..+.++++|+++|+|++|.|-...+
T Consensus        89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~  168 (214)
T KOG0086|consen   89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR  168 (214)
T ss_pred             EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhh
Q 030524          169 LITVCI  174 (175)
Q Consensus       169 ~~~~~~  174 (175)
                      .|..++
T Consensus       169 tIl~kI  174 (214)
T KOG0086|consen  169 TILNKI  174 (214)
T ss_pred             HHHHHH
Confidence            888765

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=7.8e-37  Score=208.23  Aligned_cols=161  Identities=26%  Similarity=0.491  Sum_probs=143.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ++||+++|++|+|||||+++++.+.+..++.++.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999998888888887554 46677889999999999999999999999999999999999


Q ss_pred             EECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEeccC
Q 030524           89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAK  154 (175)
Q Consensus        89 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (175)
                      ||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+...+++++++++++ +|++|||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999995 78999888765 5899999999999854            245788999999999997 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHh
Q 030524          155 AGFN-IKLCCHTLNSLIT  171 (175)
Q Consensus       155 ~~~~-v~~~f~~l~~~~~  171 (175)
                      +|++ ++++|..+.+.+.
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999888543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1e-36  Score=210.05  Aligned_cols=163  Identities=30%  Similarity=0.458  Sum_probs=143.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|+.|+|||||+.+++.+.+...+.++.+.. +...+.+++..+.+.+|||+|+++|..++..++.++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN-YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            45899999999999999999999999888888888754 44556788889999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcC-CeEEEecc
Q 030524           88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSA  153 (175)
Q Consensus        88 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~  153 (175)
                      |||++++++|+.+. .|+..+.... +++|+++|+||.|+.+.            +.+...+++.++++++ ++++++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999997 5887776554 57999999999999644            2356778899999998 59999999


Q ss_pred             CCCCCHHHHHHHHHHHHhh
Q 030524          154 KAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++|+|++++|.++.+.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999987754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.1e-36  Score=214.01  Aligned_cols=167  Identities=26%  Similarity=0.438  Sum_probs=148.7

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +....+||+++|++|||||||+.+++.+.+..++.++.+.++ ...+.+++..+.+.+|||+|++.|..++..++.++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            445679999999999999999999999999888999987555 4567788999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEE
Q 030524           85 AVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIE  150 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  150 (175)
                      +|+|||++++++|+. +..|+..+.... ++.|+++|+||+|+.+            .+.+..++++++|+++++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 588999988765 5789999999999864            366888999999999999 6999


Q ss_pred             eccCCCC-CHHHHHHHHHHHHhhh
Q 030524          151 TSAKAGF-NIKLCCHTLNSLITVC  173 (175)
Q Consensus       151 ~s~~~~~-~v~~~f~~l~~~~~~~  173 (175)
                      |||++|+ |++++|..++..+...
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHh
Confidence            9999998 8999999998877653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.3e-36  Score=205.33  Aligned_cols=163  Identities=40%  Similarity=0.719  Sum_probs=150.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            37999999999999999999999888888888888888888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++|+.+..|+..+.....++.|+++++||+|+.+.......++..++..++++++++|+++|+|+.++|.++.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998776567999999999999877778888899999999999999999999999999999998


Q ss_pred             HHh
Q 030524          169 LIT  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1e-36  Score=208.29  Aligned_cols=166  Identities=39%  Similarity=0.641  Sum_probs=149.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS   77 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~   77 (175)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.++....+...          +..+.+.+||++|++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            35899999999999999999999999888888988888776666543          45688999999999999999999


Q ss_pred             cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (175)
                      +++++|++++|||++++++|..+..|+..+..... ++.|+++|+||+|+.+.+....++...++.+++++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            99999999999999999999999999999877643 57899999999999887888888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 030524          157 FNIKLCCHTLNSLITVC  173 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~~~  173 (175)
                      .|++++|++|.+.+..+
T Consensus       163 ~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         163 TNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999888764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.5e-36  Score=210.94  Aligned_cols=164  Identities=37%  Similarity=0.574  Sum_probs=148.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      +||+++|++|+|||||+++|+.+.+...+.++.+.++....+..+ +..+.+.+||++|++++..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888889999888887777777 7788999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~f  163 (175)
                      ||++++++|+.+..|+..+....    ..++|+++|+||+|+.+.+.....++..+++..+ ++++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886542    2578999999999997667788889999999999 699999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      .+|.+.+...
T Consensus       161 ~~l~~~l~~~  170 (201)
T cd04107         161 RFLVKNILAN  170 (201)
T ss_pred             HHHHHHHHHh
Confidence            9999887654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.4e-36  Score=204.26  Aligned_cols=161  Identities=42%  Similarity=0.721  Sum_probs=153.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++++......++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ++++++|+.+..|+..+....+.+.|+++++||.|+.+.+++..++++.++++++++|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998876799999999999988889999999999999999999999999999999999999887


Q ss_pred             h
Q 030524          171 T  171 (175)
Q Consensus       171 ~  171 (175)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.6e-36  Score=204.90  Aligned_cols=162  Identities=32%  Similarity=0.574  Sum_probs=149.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988889999998888888888899999999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      |++++++++.+..|+..+.....     .+.|+++++||+|+.+.......+...++...+++++++||++|.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999988764     4799999999999976667778888888998999999999999999999999


Q ss_pred             HHHHHHh
Q 030524          165 TLNSLIT  171 (175)
Q Consensus       165 ~l~~~~~  171 (175)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.7e-36  Score=206.35  Aligned_cols=162  Identities=22%  Similarity=0.477  Sum_probs=143.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|+.|+|||||+++++.+.+..++.++.+.++....+..++..+.+.+||++|+++|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999988889999998888888888998999999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----CCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      |++++++|+.+..|+..+........| ++|+||+|+.++     ......+.+++++..+++++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999876555667 578999998531     12234567788888999999999999999999999


Q ss_pred             HHHHHHhh
Q 030524          165 TLNSLITV  172 (175)
Q Consensus       165 ~l~~~~~~  172 (175)
                      ++.+.+..
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99987754

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.6e-36  Score=203.10  Aligned_cols=161  Identities=35%  Similarity=0.536  Sum_probs=142.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|||||||+++++.+.+...+.++.+ +.+...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            37999999999999999999999887777777765 45556677888888999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ||++++++++.+..|+..+..... .+.|+++++||+|+.+.+.....+...+++.++++++++||++|.|+.++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999999887644 6799999999999977666777778888888889999999999999999999998


Q ss_pred             HHH
Q 030524          168 SLI  170 (175)
Q Consensus       168 ~~~  170 (175)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=7.9e-36  Score=205.30  Aligned_cols=165  Identities=42%  Similarity=0.688  Sum_probs=151.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999888778888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++++|..+..|+..+........|+++++||.|+.+.......++..++...+++++++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988776679999999999998777778888888999899999999999999999999999998


Q ss_pred             Hhhhh
Q 030524          170 ITVCI  174 (175)
Q Consensus       170 ~~~~~  174 (175)
                      +..+.
T Consensus       161 ~~~~~  165 (188)
T cd04125         161 IIKRL  165 (188)
T ss_pred             HHHHh
Confidence            87643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-37  Score=195.37  Aligned_cols=163  Identities=38%  Similarity=0.655  Sum_probs=156.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      -+||+++|+.|+|||+|++++..+-+++....+.++++..+.+.++|.++++++|||+|+++|++....|++.+|++|+|
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++...+|+-+..|+.++..+....+--|+|+||.|+.+.+++....++.|+.....-|+++||+..++++.+|..+..
T Consensus        87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence            99999999999999999999999888999999999999999999999999999998889999999999999999998876


Q ss_pred             HHh
Q 030524          169 LIT  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       167 rli  169 (213)
T KOG0095|consen  167 RLI  169 (213)
T ss_pred             HHH
Confidence            654

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.1e-35  Score=200.57  Aligned_cols=162  Identities=38%  Similarity=0.725  Sum_probs=149.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++..++..++++++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999999988878888888888888888888888999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++.+++.+..|+..+......+.|+++++||.|+...++...++...++...+++++++||++|.|++++|+++.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998877667999999999999877777888888999988999999999999999999999987


Q ss_pred             HH
Q 030524          169 LI  170 (175)
Q Consensus       169 ~~  170 (175)
                      .+
T Consensus       163 ~i  164 (165)
T cd01868         163 EI  164 (165)
T ss_pred             Hh
Confidence            64

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=8.6e-36  Score=209.00  Aligned_cols=163  Identities=36%  Similarity=0.548  Sum_probs=148.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      +||+++|++|+|||||+++|.++.+...+.++.+.+++...+.+++ ..+.+.+||++|++.+..++..++.++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999998889999999998888888765 578999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      ||++++++|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+...+.+.+++.++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999987653   35789999999999877888888999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030524          166 LNSLITV  172 (175)
Q Consensus       166 l~~~~~~  172 (175)
                      +.+.+..
T Consensus       161 l~~~l~~  167 (215)
T cd04109         161 LAAELLG  167 (215)
T ss_pred             HHHHHHh
Confidence            9988753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.5e-35  Score=200.51  Aligned_cols=164  Identities=37%  Similarity=0.685  Sum_probs=150.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+++++...+...+.++.+.+.....+..++....+.+||++|++++..+...+++++|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            38999999999999999999999988888788888888888888888888999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++++.+..|+..+.....++.|+++++||.|+.+.......+.+.++...++.++++|++.+.|+.++|.++.+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876678999999999999877777888888999999999999999999999999999988


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+..
T Consensus       164 ~~~~  167 (168)
T cd01866         164 EIYE  167 (168)
T ss_pred             HHHh
Confidence            7653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.6e-35  Score=207.69  Aligned_cols=165  Identities=38%  Similarity=0.680  Sum_probs=153.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++..++..++++++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            56899999999999999999999998887888999989888888899988999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++.+|+.+..|+..+......++|+++++||+|+.+.+.....+...++..++++++++||++|.|++++|+++.
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887767899999999999987778888889999999999999999999999999999998


Q ss_pred             HHHhh
Q 030524          168 SLITV  172 (175)
Q Consensus       168 ~~~~~  172 (175)
                      +.+..
T Consensus       171 ~~i~~  175 (216)
T PLN03110        171 LEIYH  175 (216)
T ss_pred             HHHHH
Confidence            88754

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.1e-35  Score=199.79  Aligned_cols=161  Identities=37%  Similarity=0.690  Sum_probs=148.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888888887888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |+++++++..+..|+..+.....++.|+++++||.|+.+.......+...++...++.++++|++++.|+.++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998887766789999999999998777788889999999999999999999999999999999875


Q ss_pred             H
Q 030524          170 I  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            3

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=8.9e-36  Score=200.82  Aligned_cols=161  Identities=32%  Similarity=0.521  Sum_probs=142.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ++||+++|++|+|||||+++++.+.+...+.++.+.. .......++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            4799999999999999999999887777777777643 345677788888999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ||++++.+|+.+..|+..+..... .+.|+++++||+|+.+.......+...+++.++++++++||++|.|++++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999999887643 6899999999999987666777778888888999999999999999999999998


Q ss_pred             HHH
Q 030524          168 SLI  170 (175)
Q Consensus       168 ~~~  170 (175)
                      +.+
T Consensus       160 ~~l  162 (164)
T cd04175         160 RQI  162 (164)
T ss_pred             HHh
Confidence            765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=204.03  Aligned_cols=166  Identities=32%  Similarity=0.523  Sum_probs=147.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            3469999999999999999999999888777778776444 566678888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||++++++|+.+..|+..+..... .+.|+++++||+|+.+.+.+...+...++..++++++++||++|.|+.++|.+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998877643 58999999999998777777777888888888999999999999999999999


Q ss_pred             HHHHHhhh
Q 030524          166 LNSLITVC  173 (175)
Q Consensus       166 l~~~~~~~  173 (175)
                      |.+.+...
T Consensus       162 l~~~l~~~  169 (189)
T PTZ00369        162 LVREIRKY  169 (189)
T ss_pred             HHHHHHHH
Confidence            99877654

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.5e-35  Score=206.95  Aligned_cols=165  Identities=38%  Similarity=0.698  Sum_probs=149.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .+||+++|++|+|||||+++++.+.+...+.++.+.++....+.+ ++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            489999999999999999999999888878888888888777766 4667899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++++|+.+..|+..+..... ...|+++++||.|+.+.+.+...+..++++.++++++++|+++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999987654 467889999999998877888889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+...
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9887654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.4e-35  Score=205.96  Aligned_cols=170  Identities=35%  Similarity=0.652  Sum_probs=154.4

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +....+||+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++.++|+
T Consensus         2 ~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~   81 (210)
T PLN03108          2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            34456999999999999999999999988887788888888888888888888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      +++|||++++++|+.+..|+..+......+.|+++++||+|+.+.+.....+.++++++++++++++|++++.|+.++|.
T Consensus        82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~  161 (210)
T PLN03108         82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (210)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988777667899999999999987778888899999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 030524          165 TLNSLITVCI  174 (175)
Q Consensus       165 ~l~~~~~~~~  174 (175)
                      ++++.+..++
T Consensus       162 ~l~~~~~~~~  171 (210)
T PLN03108        162 KTAAKIYKKI  171 (210)
T ss_pred             HHHHHHHHHh
Confidence            9998887543

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=2.1e-35  Score=199.25  Aligned_cols=162  Identities=39%  Similarity=0.678  Sum_probs=147.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999988888888888877777788888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++++++.+..|+..+......++|+++|+||+|+.+.++....++..+++..++ .++++|+++|.|++++|.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999877667899999999999987777788888889998886 78999999999999999999


Q ss_pred             HHH
Q 030524          167 NSL  169 (175)
Q Consensus       167 ~~~  169 (175)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.8e-35  Score=207.66  Aligned_cols=164  Identities=30%  Similarity=0.536  Sum_probs=146.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|+++|..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            66799999999999999999999999888888999988888888878888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++++|+.+..|+..+.... .+.|+++|+||+|+.+ +.....+. .++...+++++++||++|.|+.++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999998765 5799999999999853 33344444 6777888999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+...
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9888643

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=2.2e-35  Score=204.73  Aligned_cols=164  Identities=38%  Similarity=0.685  Sum_probs=149.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            46899999999999999999999998888888888888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++++|+.+..|+..+.... ...|+++++||+|+.+.......+...++...+++++++|+++|.|+.++|++|.
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            999999999999999999987654 5789999999999987777778888889999999999999999999999999999


Q ss_pred             HHHhh
Q 030524          168 SLITV  172 (175)
Q Consensus       168 ~~~~~  172 (175)
                      +.+..
T Consensus       164 ~~~~~  168 (199)
T cd04110         164 ELVLR  168 (199)
T ss_pred             HHHHH
Confidence            88764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=7.7e-37  Score=196.46  Aligned_cols=167  Identities=40%  Similarity=0.690  Sum_probs=154.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ..++++++|++-+|||||++.+..+++.+-.+|+.+++++...+.. +|..+++++|||+|+++|++..+.|++|+=+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            3589999999999999999999999999889999999999887766 677899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CC-CcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SD-VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      +|||++|+++|+.+..|+++-..+.. +. +-+.+|++|+|+...++++.++++++++.+|..|+++|+++|.||++.|+
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~  166 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD  166 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence            99999999999999999999888765 44 44678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 030524          165 TLNSLITVCI  174 (175)
Q Consensus       165 ~l~~~~~~~~  174 (175)
                      .|.+.+..++
T Consensus       167 mlaqeIf~~i  176 (213)
T KOG0091|consen  167 MLAQEIFQAI  176 (213)
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.6e-35  Score=199.13  Aligned_cols=159  Identities=37%  Similarity=0.673  Sum_probs=144.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +||+++|++|+|||||+++++.+.+...+.++.+.++....+..+  +..+.+.+||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888888888888877777776  778899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++++++.+..|+..+.... .++|+++++||.|+..+..+..+++..+++.++++++++|+++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999887654 5899999999999987777788889999999999999999999999999999987


Q ss_pred             HH
Q 030524          168 SL  169 (175)
Q Consensus       168 ~~  169 (175)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.1e-35  Score=200.93  Aligned_cols=159  Identities=30%  Similarity=0.475  Sum_probs=139.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+.+++.+.+..++.++.+..+ ...+..++..+.+.+||++|++++..++..++.++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            7999999999999999999999998888888887554 445677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcC-CeEEEeccCC
Q 030524           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSAKA  155 (175)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  155 (175)
                      |++++++|+.+. .|+..+.... +++|+++++||+|+.+.            +.+...++++++++.+ +.+++|||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 5888876654 57999999999998543            5667788888998887 6999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 030524          156 GFNIKLCCHTLNSLI  170 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~  170 (175)
                      |+|++++|+.++..+
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999988743

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2.1e-35  Score=203.63  Aligned_cols=164  Identities=40%  Similarity=0.724  Sum_probs=148.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      +||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998775 46777887777777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++++.+..|+..+......++|+++++||.|+..++.....+...++..++++++++|+++|.|++++|.++.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876668999999999999777777788888999999999999999999999999999998


Q ss_pred             HHhhh
Q 030524          169 LITVC  173 (175)
Q Consensus       169 ~~~~~  173 (175)
                      .+...
T Consensus       161 ~~~~~  165 (191)
T cd04112         161 ELKHR  165 (191)
T ss_pred             HHHHh
Confidence            87653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.8e-35  Score=199.10  Aligned_cols=161  Identities=34%  Similarity=0.540  Sum_probs=143.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ++||+++|.+|+|||||+++++.+.+...+.++.+ +.....+.+++....+.+||++|++++..++..++.++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999988877777765 55566777888888999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ||++++++|+.+..|+..+..... .++|+++++||+|+.+.......+...++..++++++++||++|.|+.++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998887643 6899999999999976666677778888888899999999999999999999998


Q ss_pred             HHH
Q 030524          168 SLI  170 (175)
Q Consensus       168 ~~~  170 (175)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.2e-37  Score=196.79  Aligned_cols=166  Identities=39%  Similarity=0.659  Sum_probs=159.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .++||+++|...+|||||+-+++.++++..+.++....+..+...+++....++||||+|+++|..+-..|++.+|++++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL   91 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL   91 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence            46999999999999999999999999999989988888888999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++|++||+.++.|..+++...+..+-+++|+||.|+.+++.+..++++..+...|+.++++||+++.|+.++|..|.
T Consensus        92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen   92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 030524          168 SLITVC  173 (175)
Q Consensus       168 ~~~~~~  173 (175)
                      +.+.+.
T Consensus       172 ~~MiE~  177 (218)
T KOG0088|consen  172 AKMIEH  177 (218)
T ss_pred             HHHHHH
Confidence            988764

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.1e-35  Score=198.59  Aligned_cols=160  Identities=31%  Similarity=0.566  Sum_probs=142.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|||||||+++++.+.+...+.++.+.+........++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888888888887777777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++++++.+..|+..+..... ++|+++++||+|+.+ +... .+..+++...+++++++||++|+|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999988764 899999999999863 2333 34556777778899999999999999999999988


Q ss_pred             Hhh
Q 030524          170 ITV  172 (175)
Q Consensus       170 ~~~  172 (175)
                      +..
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.8e-35  Score=198.78  Aligned_cols=162  Identities=35%  Similarity=0.599  Sum_probs=144.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|++|+|||||+++++.+.+..++.++.+.++......+++..+.+.+||++|+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988999999988888888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ++++++++.+..|+..+..... ...|+++|+||.|+.+...  ....++..++++++++++++||++|.|++++|..+.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998876543 4578999999999865433  345667788888899999999999999999999998


Q ss_pred             HHHhh
Q 030524          168 SLITV  172 (175)
Q Consensus       168 ~~~~~  172 (175)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            87754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2e-35  Score=203.62  Aligned_cols=162  Identities=36%  Similarity=0.566  Sum_probs=143.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|.+|+|||||+++|+.+.+...+.++.+..+ ......++..+.+.+||++|+++|..++..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999888777777776433 4456678888899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ++++++|+.+..|+..+.....   .+.|+++|+||+|+.+.+.....+...++..++++++++||++|.|++++|.++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999998876543   5789999999999987777888888889999999999999999999999999999


Q ss_pred             HHHhhh
Q 030524          168 SLITVC  173 (175)
Q Consensus       168 ~~~~~~  173 (175)
                      +.+..+
T Consensus       160 ~~l~~~  165 (190)
T cd04144         160 RALRQQ  165 (190)
T ss_pred             HHHHHh
Confidence            877543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=4.5e-35  Score=196.72  Aligned_cols=160  Identities=82%  Similarity=1.177  Sum_probs=147.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|||||||++++++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999888888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++++|+.+..|+..+....+.+.|+++++||+|+.+..+....+...+++..+++++++|++++.|++++|.++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999887765679999999999997777778888888898889999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=5.8e-35  Score=196.62  Aligned_cols=163  Identities=45%  Similarity=0.770  Sum_probs=150.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999998888888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++++++.+..|+..+..+...++|+++++||+|+.+.++...+..+.+++.++++++++|+++|.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988876789999999999987767778888888999999999999999999999999999988


Q ss_pred             Hhh
Q 030524          170 ITV  172 (175)
Q Consensus       170 ~~~  172 (175)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=4.8e-35  Score=198.38  Aligned_cols=162  Identities=37%  Similarity=0.611  Sum_probs=147.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCCcEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVV   87 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   87 (175)
                      .++|+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++++. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999988887888888888888888889988999999999999887 578889999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC---CCCHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKLCC  163 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~f  163 (175)
                      |||++++++++.+..|+..+..... .++|+++++||+|+.+.++....+...++...+++++++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            9999999999999999998887653 6799999999999988888888889999999999999999999   99999999


Q ss_pred             HHHHHHH
Q 030524          164 HTLNSLI  170 (175)
Q Consensus       164 ~~l~~~~  170 (175)
                      ..+.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.9e-35  Score=198.90  Aligned_cols=159  Identities=31%  Similarity=0.499  Sum_probs=139.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+.+++.+.+..++.++.. +.+...+..++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            37999999999999999999999988888888875 45555667888889999999999999999999999999999999


Q ss_pred             EECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccC
Q 030524           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK  154 (175)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (175)
                      ||++++++|+.+. .|+..+.... ++.|+++++||+|+.+.            +.+...++..++.+++. ++++|||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999986 5877776654 58999999999998542            35778889999999985 99999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 030524          155 AGFNIKLCCHTLNSL  169 (175)
Q Consensus       155 ~~~~v~~~f~~l~~~  169 (175)
                      +|+|++++|..+.+.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=7.2e-35  Score=197.45  Aligned_cols=162  Identities=39%  Similarity=0.597  Sum_probs=145.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||+++++.+.+.+.+.++.+.++....+..++..+.+.+||+||++++..++..+++++|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            35699999999999999999999999888888888888877778888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKL  161 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~  161 (175)
                      +|||++++++++.+..|...+.....    .++|+++++||+|+. .+.....+++++++++++ +++++||++|.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999998876542    568999999999986 566678888999998885 899999999999999


Q ss_pred             HHHHHHHH
Q 030524          162 CCHTLNSL  169 (175)
Q Consensus       162 ~f~~l~~~  169 (175)
                      +|.++++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99998875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=6.3e-35  Score=204.09  Aligned_cols=158  Identities=35%  Similarity=0.576  Sum_probs=138.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|.+|+|||||+++++.+.+.. +.++.+.++.....    ..+.+.+||++|++.|..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999988764 46677666554432    4578999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHhcC-----
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVSIEEGEAKSRELN-----  145 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~-------------------~~~~~~~~~~~~~~~~~-----  145 (175)
                      |++++++|+.+..|+..+......++|+++|+||+|+.+                   .+++..+++..++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999998888776567899999999999975                   57788899999999876     


Q ss_pred             ---------CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          146 ---------VMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       146 ---------~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                               ++|++|||++|.||+++|..+++.+..
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     689999999999999999999887764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=6.1e-35  Score=196.68  Aligned_cols=161  Identities=37%  Similarity=0.564  Sum_probs=142.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|||||||++++++..+...+.++.+ +.......+++..+.+.+||+||++++..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999887777777665 444566677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      |++++++++.+..|...+..... .+.|+++++||+|+.+.+.....+...+++..+++++++||++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888876644 57899999999999776667777888889889999999999999999999999998


Q ss_pred             HHh
Q 030524          169 LIT  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.3e-34  Score=195.02  Aligned_cols=161  Identities=35%  Similarity=0.567  Sum_probs=141.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||++++++......+.++.+ +.+.....+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999999999999887777777765 33445566788888999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ||++++.+++.+..|+..+..... .+.|+++++||+|+.........+..++++..+++++++||++|.|+.++|+++.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999998887543 5799999999999977666777788888888899999999999999999999998


Q ss_pred             HHH
Q 030524          168 SLI  170 (175)
Q Consensus       168 ~~~  170 (175)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.2e-34  Score=194.61  Aligned_cols=160  Identities=32%  Similarity=0.523  Sum_probs=140.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+++++++.+...+.++.+. .+.....+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            379999999999999999999998877777777763 3456667888888899999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ||++++.+++.+..|+..+..... .+.|+++++||+|+.+ +.....+...++...+++++++||++|.|++++|.++.
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998887654 5799999999999865 45566778888888899999999999999999999998


Q ss_pred             HHH
Q 030524          168 SLI  170 (175)
Q Consensus       168 ~~~  170 (175)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.3e-34  Score=202.57  Aligned_cols=162  Identities=22%  Similarity=0.459  Sum_probs=140.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ++||+++|++|+|||||+.++..+.+..++.++...++ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            37999999999999999999999998888999987554 45677889999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccC
Q 030524           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK  154 (175)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (175)
                      ||++++++|+.+. .|...+.. ..++.|+++|+||+|+.+.            ..+...++..++++.++ +|++|||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            9999999999984 56665544 3468999999999998542            13677889999999996 99999999


Q ss_pred             CCCC-HHHHHHHHHHHHhh
Q 030524          155 AGFN-IKLCCHTLNSLITV  172 (175)
Q Consensus       155 ~~~~-v~~~f~~l~~~~~~  172 (175)
                      ++++ ++++|......+..
T Consensus       159 ~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         159 SSERSVRDVFHVATVASLG  177 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHh
Confidence            9985 99999998876554

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.7e-34  Score=198.81  Aligned_cols=161  Identities=33%  Similarity=0.527  Sum_probs=138.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      .||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..++.++|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3799999999999999999999988888888876554 345667788889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHhcC-CeEEEeccCC
Q 030524           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELN-VMFIETSAKA  155 (175)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~  155 (175)
                      |++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.+            .+...++..++.+.+ +++++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 5888887654 589999999999986543            345667778888877 6999999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 030524          156 GFNIKLCCHTLNSLITV  172 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~~~  172 (175)
                      |.|++++|.++.+.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.3e-34  Score=195.38  Aligned_cols=159  Identities=33%  Similarity=0.483  Sum_probs=138.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++++.+...+.++.+.. +......++..+.+.+||++|++++..++..++..+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            789999999999999999999998877777776533 3445566777889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |++++++++.+..|+..+.....   +++|+++|+||+|+.+.+++...++..++..++++++++||++|+|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887766543   579999999999997767777778888888899999999999999999999998


Q ss_pred             HHH
Q 030524          167 NSL  169 (175)
Q Consensus       167 ~~~  169 (175)
                      ...
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=2.3e-34  Score=193.59  Aligned_cols=162  Identities=45%  Similarity=0.789  Sum_probs=148.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999988777788887777778888889899999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++++....|+..+......++|+++++||+|+.........+...++...+++++++|+++|.|+.++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998877678999999999998766777888888899999999999999999999999999988


Q ss_pred             HH
Q 030524          169 LI  170 (175)
Q Consensus       169 ~~  170 (175)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.4e-34  Score=193.38  Aligned_cols=159  Identities=28%  Similarity=0.517  Sum_probs=139.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++.+.+.+.+.++.+.+........++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998888777777777777777778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++.+++.+..|+..+.... ++.|+++++||+|+.+.   ...+...++...+++++++||++|.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999987654 57999999999998432   2344556677778999999999999999999999987


Q ss_pred             Hhh
Q 030524          170 ITV  172 (175)
Q Consensus       170 ~~~  172 (175)
                      +.+
T Consensus       157 ~~~  159 (161)
T cd04124         157 AVS  159 (161)
T ss_pred             HHh
Confidence            764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.6e-34  Score=198.77  Aligned_cols=164  Identities=26%  Similarity=0.340  Sum_probs=137.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIRD   81 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~   81 (175)
                      +||+++|.+|||||||+++++++.+...+.++.+.+.+...+..++..+.+.+|||||.+.+...        ....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999888888888876766667778888899999999997654321        2344789


Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCC
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF  157 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  157 (175)
                      +|++|+|||++++++|+.+..|+..+....   ..++|+++++||+|+.+.+.....+...++. .++++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999999888764   3679999999999997666666666666654 568999999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 030524          158 NIKLCCHTLNSLITVC  173 (175)
Q Consensus       158 ~v~~~f~~l~~~~~~~  173 (175)
                      |++++|..+.+.+..+
T Consensus       161 ~v~~lf~~i~~~~~~~  176 (198)
T cd04142         161 HILLLFKELLISATTR  176 (198)
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            9999999999877643

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=6e-34  Score=191.82  Aligned_cols=160  Identities=34%  Similarity=0.570  Sum_probs=141.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC--CCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      +||+++|++|||||||++++..+  .+..++.++.+.++.......+ +..+.+.+||+||++.+..++..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5667888888888777666664 56789999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||+++++++..+..|++.+.... .+.|+++|+||+|+.+..+....+...++...+++++++|+++|.|+.++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999888764 579999999999997777777777777888888999999999999999999999


Q ss_pred             HHHH
Q 030524          167 NSLI  170 (175)
Q Consensus       167 ~~~~  170 (175)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.5e-34  Score=197.41  Aligned_cols=155  Identities=28%  Similarity=0.530  Sum_probs=139.1

Q ss_pred             ECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh
Q 030524           15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR   94 (175)
Q Consensus        15 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   94 (175)
                      +|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888889998888888888889999999999999999999999999999999999999999


Q ss_pred             hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524           95 QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      .+|+.+..|+..+.... .++|+++|+||+|+.. +.+.... ..++...++.+++|||++|.|+.++|.+|.+.+..
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999998765 5899999999999854 3444433 46788889999999999999999999999987754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=9.6e-34  Score=190.17  Aligned_cols=161  Identities=39%  Similarity=0.678  Sum_probs=144.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++++.+...+.++.+.+.........+....+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998877766677766676777777788889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++++++.+..|+..+......++|+++++||+|+.+..+....+...+++..+++++++|++++.|+.++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988776789999999999998777777888888888899999999999999999999999876


Q ss_pred             H
Q 030524          170 I  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.3e-33  Score=191.42  Aligned_cols=165  Identities=40%  Similarity=0.650  Sum_probs=147.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777888887888788888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~f~  164 (175)
                      |++++.+++.+..|...+.....    .++|+++++||+|+.++.....++.+.++...+ ++++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999889888766553    379999999999997666667778888888887 7999999999999999999


Q ss_pred             HHHHHHhhhh
Q 030524          165 TLNSLITVCI  174 (175)
Q Consensus       165 ~l~~~~~~~~  174 (175)
                      ++.+.+....
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=7.9e-34  Score=195.17  Aligned_cols=162  Identities=30%  Similarity=0.442  Sum_probs=139.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      +||+++|++|+|||||+++++++.+...+.++.+.++.. .+... +..+.+.+|||+|++++...+..++.++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999998888888887655543 34454 6778999999999999999999999999999999


Q ss_pred             EECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHH
Q 030524           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLC  162 (175)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~  162 (175)
                      ||++++++|+.+. .|+..+... .++.|+++++||.|+...    +.+...+..+++..+++ +++++||++|.|+.++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 487777654 358999999999998653    34567888999999998 9999999999999999


Q ss_pred             HHHHHHHHhhh
Q 030524          163 CHTLNSLITVC  173 (175)
Q Consensus       163 f~~l~~~~~~~  173 (175)
                      |..+.+.+...
T Consensus       159 f~~l~~~~~~~  169 (187)
T cd04132         159 FDTAIEEALKK  169 (187)
T ss_pred             HHHHHHHHHhh
Confidence            99999887653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=7.9e-34  Score=193.00  Aligned_cols=159  Identities=32%  Similarity=0.500  Sum_probs=138.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEEC
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   91 (175)
                      |+++|++|+|||||++++.++.+...+.++.. +.+...+..++..+.+.+|||+|++.+..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999988877777765 44455667788888999999999999999999999999999999999


Q ss_pred             CChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccCCCC
Q 030524           92 ASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (175)
Q Consensus        92 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (175)
                      +++++|+.+. .|+..+.... ++.|+++++||+|+...            ..+...++..+++..+. ++++|||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 5888887654 58999999999998642            23677788889999997 99999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 030524          158 NIKLCCHTLNSLITV  172 (175)
Q Consensus       158 ~v~~~f~~l~~~~~~  172 (175)
                      |++++|..+.+.++.
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1e-33  Score=195.26  Aligned_cols=158  Identities=29%  Similarity=0.361  Sum_probs=130.2

Q ss_pred             ceeEEEECCCCCCHHHHHH-HHhcCC-----CCCccccccee-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 030524            9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS   73 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   73 (175)
                      .+||+++|++|+|||||+. ++..+.     +..++.+|.+. +.+...        ..+++..+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 555443     34556677642 323222        25688899999999999875  3


Q ss_pred             cccccccCCcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CCCCC
Q 030524           74 LIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVS  133 (175)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~-------------------~~~~~  133 (175)
                      ....+++++|++|+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4567899999999999999999999997 5888887665 5789999999999863                   36788


Q ss_pred             HHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524          134 IEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      ..+++.++++++++|++|||++|.|++++|..+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=189.39  Aligned_cols=160  Identities=39%  Similarity=0.716  Sum_probs=151.7

Q ss_pred             EEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEEC
Q 030524           13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (175)
Q Consensus        13 ~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   91 (175)
                      +++|++++|||+|+-++..+.+. .+..++.++++..+.+..++..+++++|||+|+++|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999998887765 67899999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524           92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      .|+.||++.+.|+.++..+....+.+.+++||+|+.+++.+..++.++++..+++||+++|+++|.+++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999998888999999999999999999999999999999999999999999999999999988875


Q ss_pred             h
Q 030524          172 V  172 (175)
Q Consensus       172 ~  172 (175)
                      .
T Consensus       161 k  161 (192)
T KOG0083|consen  161 K  161 (192)
T ss_pred             H
Confidence            4

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=196.47  Aligned_cols=167  Identities=38%  Similarity=0.639  Sum_probs=144.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      .....+||+++|++|+|||||+++|+...+ ..+.++.+.++....+..++..+.+.+||+||++++..++..+++++|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            334579999999999999999999998875 4567777777777777888888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHH-HHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524           85 AVVVYDVASRQSFLNTSK-WIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      +|+|||++++++|+.+.. |...+..... .+.|+++|+||+|+.........+...++..++++++++||++|.|++++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999876 5555544332 56899999999999877777788888899999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 030524          163 CHTLNSLITV  172 (175)
Q Consensus       163 f~~l~~~~~~  172 (175)
                      |.+|.+.+..
T Consensus       169 ~~~l~~~~~~  178 (211)
T PLN03118        169 FEELALKIME  178 (211)
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=2.3e-33  Score=193.74  Aligned_cols=162  Identities=35%  Similarity=0.608  Sum_probs=142.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      +||+++|++|+|||||+++++.+.+.. .+.++.+.++....+.+++..+.+.+||++|++++..++..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988764 6788888777777888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      ||++++++++.+..|+..+.... .+.|+++|+||+|+.+.    ..+...+...++..++++++++|+++|+|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999887653 57999999999998532    34455677888888899999999999999999999


Q ss_pred             HHHHHHhh
Q 030524          165 TLNSLITV  172 (175)
Q Consensus       165 ~l~~~~~~  172 (175)
                      ++.+.+..
T Consensus       160 ~i~~~~~~  167 (193)
T cd04118         160 KVAEDFVS  167 (193)
T ss_pred             HHHHHHHH
Confidence            99988764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=2e-33  Score=190.14  Aligned_cols=162  Identities=34%  Similarity=0.495  Sum_probs=143.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||++++.++.+...+.++.+. .....+..++..+.+.+||+||+++|..+++.++.+++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            378999999999999999999998877777777763 4456667788888999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      ||++++++++.+..|...+..... .+.|+++++||.|+.+.+....++...+++.++ ++++++||++|.|++++|.++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999998876543 679999999999998777777788888888888 799999999999999999999


Q ss_pred             HHHHh
Q 030524          167 NSLIT  171 (175)
Q Consensus       167 ~~~~~  171 (175)
                      ...+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            87654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=1.2e-33  Score=201.04  Aligned_cols=160  Identities=29%  Similarity=0.460  Sum_probs=140.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++.+.+...+.++.. ++....+.+++..+.+.+|||+|++.|..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988877778775 666777788898999999999999999888888899999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEeccCCCCCH
Q 030524           90 DVASRQSFLNTSKWIDEVRTE---------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI  159 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v  159 (175)
                      |++++++|+.+..|+..+...         ...++|+++++||+|+.+.+++..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999999988754         225799999999999976677788888777664 4689999999999999


Q ss_pred             HHHHHHHHHHH
Q 030524          160 KLCCHTLNSLI  170 (175)
Q Consensus       160 ~~~f~~l~~~~  170 (175)
                      +++|.+|.+.+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.5e-33  Score=188.76  Aligned_cols=153  Identities=16%  Similarity=0.320  Sum_probs=130.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|+.|+|||||+.+++.+.+...+.++. ..+ ...+.+++..+.+.+||++|++.     ..++.++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            589999999999999999999887766655443 233 46678888888999999999875     34678899999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      |++++++|+.+..|+..+..... ++.|+++++||.|+.  ..+++...++++++++. +++|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987764 678999999999984  35677888888999876 589999999999999999999


Q ss_pred             HHHH
Q 030524          166 LNSL  169 (175)
Q Consensus       166 l~~~  169 (175)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=3.5e-33  Score=187.53  Aligned_cols=159  Identities=43%  Similarity=0.720  Sum_probs=142.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998877777888887777777777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+. .......+...++...+++++++|+++|.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999999887754 689999999999986 4455677888899999999999999999999999999887


Q ss_pred             H
Q 030524          169 L  169 (175)
Q Consensus       169 ~  169 (175)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.4e-33  Score=190.36  Aligned_cols=160  Identities=32%  Similarity=0.498  Sum_probs=137.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCcEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~   89 (175)
                      ||+++|++|+|||||+++++.+.+...+.++.... +.....+++..+.+.+||+||++. +...+..+++++|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999887776766666433 345567788888999999999885 3456778899999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC-CCHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKLCCHTL  166 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~v~~~f~~l  166 (175)
                      |++++++|+.+..|+..+....  ..+.|+++|+||+|+.+.+.+...++..++...+++++++|+++| .|++++|..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887754  357999999999999777777888889999999999999999999 5999999999


Q ss_pred             HHHHh
Q 030524          167 NSLIT  171 (175)
Q Consensus       167 ~~~~~  171 (175)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            88764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=6.2e-33  Score=188.54  Aligned_cols=157  Identities=35%  Similarity=0.533  Sum_probs=137.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+.+++.+.+..++.++. .+.+...+.+++..+.+.+||+||++++...+..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988888777776 4666667788888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA  155 (175)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (175)
                      |++++++|+.+. .|+..+.... ++.|+++++||.|+.+            .+.+...++..+++..++ +++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999975 6887776543 5799999999999853            356677889999999987 999999999


Q ss_pred             CCCHHHHHHHHHH
Q 030524          156 GFNIKLCCHTLNS  168 (175)
Q Consensus       156 ~~~v~~~f~~l~~  168 (175)
                      |.|++++|+.+.-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998754

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=1.2e-32  Score=186.34  Aligned_cols=164  Identities=38%  Similarity=0.643  Sum_probs=145.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||++|++.+...+..++.++|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            34599999999999999999999988777777788777777777888888889999999999999999899999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......++|+++++||+|+.+.++......+.+.....++++++|+++|.|++++|+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998877766689999999999997777777777777887778899999999999999999999


Q ss_pred             HHHH
Q 030524          167 NSLI  170 (175)
Q Consensus       167 ~~~~  170 (175)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=7.4e-33  Score=188.21  Aligned_cols=160  Identities=28%  Similarity=0.476  Sum_probs=138.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++.+.+...+.++.. +.+...+.+++..+.+.+||++|++.+...+..++.++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999888777777664 444556778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA  155 (175)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (175)
                      |++++.+|+.+. .|+..+... .++.|+++++||+|+.+.            ..+..+++..+++..++ ++++|||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999986 577766654 578999999999998543            35667888899999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 030524          156 GFNIKLCCHTLNSLIT  171 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~~  171 (175)
                      |.|++++|+.+++.++
T Consensus       159 ~~gi~~~f~~~~~~~~  174 (174)
T cd04135         159 QKGLKTVFDEAILAIL  174 (174)
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999988763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=2.9e-33  Score=189.46  Aligned_cols=162  Identities=21%  Similarity=0.243  Sum_probs=140.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      +.+||+++|.+|+|||||+++++++.+. .++.++.+.++....+..++..+.+.+||++|++.+..++..++.++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            5689999999999999999999999888 888898887777777778888888999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||++++.+++.+..|+..+...  .++|+++|+||+|+.+..+....+...+++.+++ .++++||++|+|+.++|..
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999998888765322  4799999999999865554444456677788887 4699999999999999999


Q ss_pred             HHHHHh
Q 030524          166 LNSLIT  171 (175)
Q Consensus       166 l~~~~~  171 (175)
                      +.+.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998775

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=100.00  E-value=6.5e-33  Score=185.17  Aligned_cols=159  Identities=48%  Similarity=0.836  Sum_probs=146.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||++++.+..+...+.++.+.++.......++....+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      |++++++++.+..|+..+......+.|+++++||+|+..+......+.+.++...+++++++|++++.|++++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999998887678999999999998756777788888999988999999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=8.7e-33  Score=194.30  Aligned_cols=160  Identities=33%  Similarity=0.460  Sum_probs=138.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-CCcEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVV   87 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   87 (175)
                      +||+++|++|+|||||+++++.+.+. ..+.++.+.++....+.+++....+.+||++|++  ......++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999887765 6666666556777778888888999999999987  233345566 8999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998877643 679999999999998777778888888999899999999999999999999999


Q ss_pred             HHHHh
Q 030524          167 NSLIT  171 (175)
Q Consensus       167 ~~~~~  171 (175)
                      .+.+.
T Consensus       159 ~~~~~  163 (221)
T cd04148         159 VRQIR  163 (221)
T ss_pred             HHHHH
Confidence            98775

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-35  Score=187.47  Aligned_cols=167  Identities=38%  Similarity=0.625  Sum_probs=153.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE---------CCeEEEEEEEeCCCccccccccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---------EDRTVRLQLWDTAGQERFRSLIPSY   78 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~D~~G~~~~~~~~~~~   78 (175)
                      .-+|.+.+|++|+||||++.++..+++......+.++++..+.+..         .+..+.+++|||+|+++|+++...+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            3478889999999999999999999999999999999999887754         3456789999999999999999999


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (175)
                      ++.+=+++++||+++..||-+++.|+.++..+.- .+.-+++++||+|+.+.+.+..+++..++.++++||+++||-+|.
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~  167 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT  167 (219)
T ss_pred             HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence            9999999999999999999999999999988765 456689999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhhh
Q 030524          158 NIKLCCHTLNSLITVCI  174 (175)
Q Consensus       158 ~v~~~f~~l~~~~~~~~  174 (175)
                      ++++..+.|+..+|..+
T Consensus       168 Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  168 NVEKAVELLLDLVMKRI  184 (219)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999988887653

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=2.9e-32  Score=183.40  Aligned_cols=162  Identities=34%  Similarity=0.550  Sum_probs=142.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++...+...+.++.. +.+......++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999887777777665 444556677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      |++++.++..+..|+..+..... .++|+++++||+|+.........+...++.+++++++++|+++|.|+.++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999999888743 57999999999998765566777788888889999999999999999999999988


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+..
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=1.4e-31  Score=182.06  Aligned_cols=159  Identities=32%  Similarity=0.515  Sum_probs=134.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      .||+++|++|||||||+++++++.+...+.++....+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            6899999999999999999999888877777776443 345667888889999999999999998888999999999999


Q ss_pred             ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA  155 (175)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (175)
                      |++++++|+.+. .|+..+.... .+.|+++++||+|+.+.            ..+...+.+.++...+. ++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 4777666543 57999999999998542            23456777888888875 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 030524          156 GFNIKLCCHTLNSLI  170 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~  170 (175)
                      |.|++++|.++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00876 Ras Ras family

Probab=100.00  E-value=8e-32  Score=180.48  Aligned_cols=159  Identities=40%  Similarity=0.575  Sum_probs=141.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|++|||||||++++++......+.++.. +........++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998877777777665 5566666777777899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      ++++++++.+..|+..+..... .+.|+++++||+|+.+......+++..++..++++++++|++++.|+.++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999998887765 689999999999998767778888999999999999999999999999999999875


Q ss_pred             H
Q 030524          170 I  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            3

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-32  Score=172.48  Aligned_cols=168  Identities=35%  Similarity=0.618  Sum_probs=157.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ..-+|-+++|+-|+|||+|++++...++..+-..+.++++....+.+.+..+++++||++|+++|+...+.|++.+-+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            34588999999999999999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++.+.++..+..|+..-+....++.-+++++||.|+...+.+..+++++|+.+.|+.|+++|+++|+++++.|-..
T Consensus        89 mvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~  168 (215)
T KOG0097|consen   89 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLET  168 (215)
T ss_pred             EEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence            99999999999999999998888777888899999999999999999999999999999999999999999999999988


Q ss_pred             HHHHhhhh
Q 030524          167 NSLITVCI  174 (175)
Q Consensus       167 ~~~~~~~~  174 (175)
                      .+.+..++
T Consensus       169 akkiyqni  176 (215)
T KOG0097|consen  169 AKKIYQNI  176 (215)
T ss_pred             HHHHHHhh
Confidence            88776654

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=4.4e-32  Score=186.25  Aligned_cols=164  Identities=37%  Similarity=0.582  Sum_probs=154.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|.+|+|||+|..+++.+.+...|.++.. +.+.+...+++..+.+.|+||+|++++..+...++.++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999998 8888999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      ||+++++.||+.+..+++.+....+ ..+|+++|+||+|+.+.+.+..++++.++..++|+|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999955544 678999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+-.
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            887654

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=4.1e-31  Score=185.43  Aligned_cols=169  Identities=30%  Similarity=0.555  Sum_probs=148.8

Q ss_pred             CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 030524            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (175)
Q Consensus         1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (175)
                      |.++.....+||+++|++|||||||+++++.+.+...+.++.+.++.......++..+.+.+||++|++++...+..++.
T Consensus         1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~   80 (215)
T PTZ00132          1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI   80 (215)
T ss_pred             CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence            66788888999999999999999999999888888888999998888888878888999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      +++++++|||++++.+|..+..|+..+.... .++|+++++||+|+.+. ... .+...++...++.++++|+++|.|++
T Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~  157 (215)
T PTZ00132         81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVK-ARQITFHRKKNLQYYDISAKSNYNFE  157 (215)
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999999999999988665 57999999999998543 222 23346777788999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      +.|.+|.+.+..
T Consensus       158 ~~f~~ia~~l~~  169 (215)
T PTZ00132        158 KPFLWLARRLTN  169 (215)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=7.9e-33  Score=186.43  Aligned_cols=153  Identities=20%  Similarity=0.255  Sum_probs=127.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      .|+++|++|+|||||++++++..+...+.++.+.+.    ..++...+.+.+||++|++++..++..+++++|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999999877777788877543    2234556789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH----HHHHHHHHhcCCeEEEeccCC------CCCHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKA------GFNIK  160 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~v~  160 (175)
                      .+++.++...+.|+..+.... +++|+++++||.|+...+....    .++..++++.++.++++||++      ++||+
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999999988886544 6899999999999865543321    234566677788999999988      99999


Q ss_pred             HHHHHHHH
Q 030524          161 LCCHTLNS  168 (175)
Q Consensus       161 ~~f~~l~~  168 (175)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=7e-32  Score=182.47  Aligned_cols=155  Identities=23%  Similarity=0.354  Sum_probs=124.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||++++..+.+. .+.++.+.+..  .+..  ..+.+.+||++|++++...+..++.++|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999876654 45666665543  2222  4578999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++.++++...|+..+.... ..+.|+++++||+|+.+  ....++++++..     ...+.++++||++|.|+.
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            9999999999999988887776543 25789999999999854  345556665542     223578999999999999


Q ss_pred             HHHHHHHH
Q 030524          161 LCCHTLNS  168 (175)
Q Consensus       161 ~~f~~l~~  168 (175)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=1.4e-31  Score=182.92  Aligned_cols=160  Identities=21%  Similarity=0.312  Sum_probs=125.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.+||+++|++|||||||++++..+.+. .+.++.+.+..  .+..  ..+.+.+||+||++++..+|..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999876654 45677765543  2233  3478999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-----CCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~  160 (175)
                      +|||+++++++++...++..+.... .++.|+++++||+|+.+..  ..++......-.     .+.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            9999999999999888887775432 2579999999999986433  333333332211     1245689999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      ++|++|.+.+..+
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988764

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=2.9e-32  Score=185.49  Aligned_cols=157  Identities=22%  Similarity=0.321  Sum_probs=124.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||++++..+.+. .+.++.+.++...  ..  ..+.+.+||++|++++...+..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~--~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETV--TY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEE--EE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            34699999999999999999999876653 4567776655432  23  3478999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++++++....|+..+.... .++.|+++++||+|+.+..  ...+..+..     +...+.++++||++|.|+.
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999998888876543 2579999999999986432  233332222     1223457789999999999


Q ss_pred             HHHHHHHHHH
Q 030524          161 LCCHTLNSLI  170 (175)
Q Consensus       161 ~~f~~l~~~~  170 (175)
                      ++|++|.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=4.3e-31  Score=180.53  Aligned_cols=163  Identities=35%  Similarity=0.477  Sum_probs=140.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      .||+++|++|+|||||++++....+...+.++....+ ......++..+.+.+||+||++++...+..++..+|+++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998877666666664333 455567777888999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      |++++++++.+..|+..+..... .+.|+++++||+|+...+.....+...++..++++++++|++++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999888887654 57899999999998766666666778888888899999999999999999999998


Q ss_pred             HHhhh
Q 030524          169 LITVC  173 (175)
Q Consensus       169 ~~~~~  173 (175)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            87643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04147 Ras_dva Ras-dva subfamily

Probab=100.00  E-value=4.6e-31  Score=182.96  Aligned_cols=161  Identities=32%  Similarity=0.489  Sum_probs=135.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|++|+|||||+++++.+.+...+.++.. +.....+.+++..+.+.+||++|+..+..++..++.++|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999887776666654 4555667778888899999999999999888999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-hcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ++++.+++.+..|+..+..... .++|+++++||+|+.+ ..........+.+. ..+++++++|+++|.|+.++|+++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988887755 5799999999999865 34444444444443 4567899999999999999999999


Q ss_pred             HHHhh
Q 030524          168 SLITV  172 (175)
Q Consensus       168 ~~~~~  172 (175)
                      +.+..
T Consensus       160 ~~~~~  164 (198)
T cd04147         160 RQANL  164 (198)
T ss_pred             HHhhc
Confidence            87653

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=2.4e-31  Score=180.11  Aligned_cols=156  Identities=22%  Similarity=0.376  Sum_probs=127.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|++|||||||++++.+..+. .+.+|.+.++.  .+..  ..+.+.+||+||++++...+..++.++|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999999987654 35667665553  2223  45789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC------CeEEEeccCCCCCHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN------VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~f  163 (175)
                      ++++++++++..|+..+..... .+.|+++++||+|+.+  .....+.++++...+      +.++++||++|.|+.++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            9999999999999988876533 5689999999999853  356666666654322      368899999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      ++|.+.+...
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9999887654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=7.4e-31  Score=177.78  Aligned_cols=157  Identities=35%  Similarity=0.550  Sum_probs=133.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++|++......+.++.. +........++..+.+.+||+||++++......+++++|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999987666666664 445556677888889999999999998888888899999999999


Q ss_pred             ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCHHHHHHHHHhcCC-eEEEeccCCC
Q 030524           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR-----------QVSIEEGEAKSRELNV-MFIETSAKAG  156 (175)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~  156 (175)
                      |++++.++.... .|+..+.... .+.|+++++||+|+.+..           .+...+..+++..+++ +++++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999998865 4666666544 489999999999986554           2356778888888888 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 030524          157 FNIKLCCHTLNS  168 (175)
Q Consensus       157 ~~v~~~f~~l~~  168 (175)
                      .|+.++|+++.+
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=1.9e-31  Score=182.76  Aligned_cols=162  Identities=24%  Similarity=0.348  Sum_probs=130.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ..+||+++|++|||||||+++++.+.+... .++.+.+.....+.. ++..+.+.+||++|++++..++..++.++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999998776543 566666655555544 446788999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------hcCCeEEEeccCCCCCH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFNI  159 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v  159 (175)
                      +|+|++++.+++....|+..+..... .+.|+++++||+|+.+  ....++...++.      ..+++++++||++|+|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            99999999999998888887776543 5799999999999853  233444444432      12356899999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030524          160 KLCCHTLNSLITV  172 (175)
Q Consensus       160 ~~~f~~l~~~~~~  172 (175)
                      +++|++|.+.+..
T Consensus       159 ~~l~~~l~~~l~~  171 (183)
T cd04152         159 QEGLEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04129 Rho2 Rho2 subfamily

Probab=99.98  E-value=2.2e-30  Score=178.02  Aligned_cols=162  Identities=31%  Similarity=0.535  Sum_probs=135.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      +.||+++|++|+|||||++++..+.+...+.++.. +.+......++..+.+.+||++|++.+......++.++|+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVF-ENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc-ceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            36899999999999999999998777666666554 33344566778788899999999998887777788999999999


Q ss_pred             EECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC----------CCCCCHHHHHHHHHhcCC-eEEEeccCCC
Q 030524           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE----------KRQVSIEEGEAKSRELNV-MFIETSAKAG  156 (175)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  156 (175)
                      ||++++++|+.+. .|+..+.... ++.|+++|+||+|+.+          .+.+..++...++++.++ ++++|||++|
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999986 5888887654 4799999999999854          344556788889999985 8999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 030524          157 FNIKLCCHTLNSLITV  172 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~~  172 (175)
                      .|++++|.++.+.+..
T Consensus       159 ~~v~~~f~~l~~~~~~  174 (187)
T cd04129         159 EGVDDVFEAATRAALL  174 (187)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999877653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.98  E-value=8.6e-32  Score=180.53  Aligned_cols=152  Identities=22%  Similarity=0.366  Sum_probs=118.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|.+|||||||++++..+.+. .+.++.+.+...  +..  ..+.+.+||++|++++...+..+++++|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999877665 456776655432  222  4578999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHH-HHHH----HhcCCeEEEeccCCCCCHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEG-EAKS----RELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      |++++.+++....|+..+.... ....|+++++||+|+.+.  ....+. +.+.    ...++.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            9999999999988887776432 256899999999998542  222232 2221    1234467899999999999999


Q ss_pred             HHHHH
Q 030524          164 HTLNS  168 (175)
Q Consensus       164 ~~l~~  168 (175)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.98  E-value=1.2e-30  Score=178.62  Aligned_cols=160  Identities=21%  Similarity=0.337  Sum_probs=124.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|||||||++++..+.+.. +.+|.+.++.  .+..  ..+.+.+||++|++++...+..++.++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456999999999999999999998776543 5667665543  2223  4478999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  160 (175)
                      +|+|+++++++.....++..+.... ..+.|+++++||.|+.+.  ....+.....     ....+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            9999999999999888877775432 256899999999998542  2223322221     1122457799999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      ++|++|.+.+..+
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>cd04154 Arl2 Arl2 subfamily

Probab=99.98  E-value=6.9e-31  Score=178.47  Aligned_cols=155  Identities=23%  Similarity=0.339  Sum_probs=124.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||++++.+... ..+.++.+...  ..+..+  .+.+.+||+||++.+..++..++.++|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            4568999999999999999999998743 34555555333  333344  367999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++.++.....|+..+.... ..+.|+++++||+|+.+..  ..++...+..     ..+++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            9999999999999888888876542 2689999999999986532  4455555543     345789999999999999


Q ss_pred             HHHHHHHH
Q 030524          161 LCCHTLNS  168 (175)
Q Consensus       161 ~~f~~l~~  168 (175)
                      ++|+++.+
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.98  E-value=1.5e-30  Score=179.89  Aligned_cols=149  Identities=21%  Similarity=0.336  Sum_probs=127.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-----CeEEEEEEEeCCCcccccccccccccCCcE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +||+++|+.|+|||||+++++.+.+...+.+|.+.++..+.+..+     +..+.+.+||++|+++|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888877776666653     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCCCHH----HHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTER-------------------GSDVIIVLVGNKTDLVEKRQVSIE----EGEAKS  141 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~iiv~nk~D~~~~~~~~~~----~~~~~~  141 (175)
                      +|+|||++++++|+.+..|+.++....                   +.++|+++|+||.|+.+++.....    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999997642                   247999999999999766544433    345678


Q ss_pred             HhcCCeEEEeccCCCCC
Q 030524          142 RELNVMFIETSAKAGFN  158 (175)
Q Consensus       142 ~~~~~~~~~~s~~~~~~  158 (175)
                      ++.+++.++.++.++..
T Consensus       161 ~~~~~~~i~~~c~~~~~  177 (202)
T cd04102         161 EQGNAEEINLNCTNGRL  177 (202)
T ss_pred             HhcCCceEEEecCCccc
Confidence            88999999999887553

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=5.6e-30  Score=172.89  Aligned_cols=159  Identities=25%  Similarity=0.346  Sum_probs=123.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||++++..+.+...+..+.  .........++..+.+.+||+||++.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999988765543322  222333445667789999999999888888888889999999999


Q ss_pred             ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHhcC--CeEEEeccCCCCCHHHHHH
Q 030524           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELN--VMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f~  164 (175)
                      |++++.+++.+. .|+..+.... .+.|+++++||+|+.+....  ...+....+..++  .+++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 5777676554 58999999999998654432  1233333344333  3899999999999999999


Q ss_pred             HHHHHHh
Q 030524          165 TLNSLIT  171 (175)
Q Consensus       165 ~l~~~~~  171 (175)
                      .+.+.+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9887664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.97  E-value=2.8e-30  Score=174.55  Aligned_cols=153  Identities=19%  Similarity=0.194  Sum_probs=120.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      +|+++|++|||||||++++.++ +...+.++.+...  ..+..  ..+.+.+||+||+++++.++..++.++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            5899999999999999999977 5566677776543  23333  34679999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHH----HHHHHHHhc--CCeEEEeccCCC------C
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIE----EGEAKSREL--NVMFIETSAKAG------F  157 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~----~~~~~~~~~--~~~~~~~s~~~~------~  157 (175)
                      ++++.+++++..|+..+..... .++|+++++||.|+.+.+.....    ....++.+.  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999998876543 57999999999998654321111    112233223  357888999998      8


Q ss_pred             CHHHHHHHHHH
Q 030524          158 NIKLCCHTLNS  168 (175)
Q Consensus       158 ~v~~~f~~l~~  168 (175)
                      |+.+.|+||.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=175.51  Aligned_cols=164  Identities=32%  Similarity=0.496  Sum_probs=149.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ...+|+++||+..+|||+|+..+..+.++.+|.||.- +.+...+.++ +..+.+.+|||+|+++|..++...++++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999995 8888899995 9999999999999999999888899999999


Q ss_pred             EEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEe
Q 030524           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIET  151 (175)
Q Consensus        86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  151 (175)
                      +++|++.++++|+++ .+|+.++..++ +++|+++||+|.|+.+            ...+..+++..++++.|+ .|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999995 67999999887 7999999999999963            246778899999999995 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhh
Q 030524          152 SAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ||++..|++++|+.....+..
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhc
Confidence            999999999999987777654

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.97  E-value=1.3e-29  Score=172.36  Aligned_cols=154  Identities=21%  Similarity=0.363  Sum_probs=121.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||+++++.+.+.. ..++.+.++.  ....+  ...+.+||+||++.+...+..+++++|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999877654 4555554433  22233  4689999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~  161 (175)
                      |+|+++++++.....++..+..... .+.|+++++||+|+.+  ....++..+..     ...+++++++||++|+|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            9999999999988888887765543 5799999999999854  22333332222     23456899999999999999


Q ss_pred             HHHHHHH
Q 030524          162 CCHTLNS  168 (175)
Q Consensus       162 ~f~~l~~  168 (175)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999865

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.97  E-value=4.8e-30  Score=172.35  Aligned_cols=152  Identities=18%  Similarity=0.259  Sum_probs=118.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +|+++|++|||||||++++..... ...+.++.+.+...  ..  ...+.+.+||+||++++...+..+++++|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 45566776644322  22  23568999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~  161 (175)
                      |++++.++.....|+..+....   ..++|+++++||+|+.+..  ...+......     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999998888888876542   2579999999999986432  2222222211     1234689999999999999


Q ss_pred             HHHHHHH
Q 030524          162 CCHTLNS  168 (175)
Q Consensus       162 ~f~~l~~  168 (175)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00879 Sar1 Sar1 subfamily

Probab=99.97  E-value=2.2e-29  Score=173.49  Aligned_cols=157  Identities=20%  Similarity=0.289  Sum_probs=126.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .++.+|+++|++|||||||++++.++.+. .+.++.+...  ..+..++  ..+.+||+||++.+...+..+++++|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999987653 4555554432  3344444  57899999999999889999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh----------------cCCeEE
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----------------LNVMFI  149 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  149 (175)
                      +|+|++++++++....|+..+..... .+.|+++++||+|+.+  .....+.+..+..                ..+.++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999999988888888876443 5799999999999853  4455666665543                224789


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 030524          150 ETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      +|||++|+|+.++|.+|.+.+
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EeEecCCCChHHHHHHHHhhC
Confidence            999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.97  E-value=7e-32  Score=176.25  Aligned_cols=167  Identities=35%  Similarity=0.547  Sum_probs=158.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+|++++|..++||||+++++|.+-+..++..+.++++....+.+.+..+...+||++|+++|......|++++.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            35799999999999999999999999999999999999999998888888888899999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +||+.+|+.||+.+..|++.+.... .++|.++|-||+|+.++.+....+.+-+++.+.+.++.+|++...|+..+|.+|
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL  176 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL  176 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence            9999999999999999999999887 489999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q 030524          167 NSLITVCI  174 (175)
Q Consensus       167 ~~~~~~~~  174 (175)
                      ++++....
T Consensus       177 aeK~~q~~  184 (246)
T KOG4252|consen  177 AEKLTQQK  184 (246)
T ss_pred             HHHHHHHH
Confidence            99887653

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=4.9e-29  Score=169.49  Aligned_cols=157  Identities=25%  Similarity=0.363  Sum_probs=127.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+..+|+++|+.||||||+++++..+... ...||.+.+...  +..++  ..+.+||.+|+..++..|+.|+.++|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            67899999999999999999999876433 356666655443  34444  56899999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------hcCCeEEEeccCCCCCH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFNI  159 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v  159 (175)
                      ||+|.++++.+.+....+..+..... .++|+++++||+|+.+  .....+......      ...+.++.||+.+|+|+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            99999999999999988888877543 6899999999999754  344555554432      23457899999999999


Q ss_pred             HHHHHHHHHHH
Q 030524          160 KLCCHTLNSLI  170 (175)
Q Consensus       160 ~~~f~~l~~~~  170 (175)
                      .+.|+||.+.|
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.97  E-value=1.4e-29  Score=169.86  Aligned_cols=152  Identities=22%  Similarity=0.377  Sum_probs=118.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      +|+++|++|+|||||++++.++.+.. ..++.+.+..  .+.. +..+.+.+||++|++.+...+..++.++|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999987653 3555554432  2223 345689999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH------HHhcCCeEEEeccCCCCCHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK------SRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      ++++.++.....|+..+..... .+.|+++++||+|+...  ....+....      +...++++++|||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999999999888888866432 57999999999998532  122222222      22234579999999999999999


Q ss_pred             HHHHH
Q 030524          164 HTLNS  168 (175)
Q Consensus       164 ~~l~~  168 (175)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.97  E-value=4.6e-29  Score=168.43  Aligned_cols=152  Identities=24%  Similarity=0.391  Sum_probs=118.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCC------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +|+++|++|+|||||++++.....      ...+.++.+.+..  .+..+  ...+.+||+||++.+..++..++.++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999986432      2233444444443  23333  4689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-------cCCeEEEeccCCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKAG  156 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~  156 (175)
                      +++|+|+++++++.....|+..+..... .++|+++++||+|+.+.  ....+...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            9999999999999998888888776433 67999999999998543  334444444332       3468999999999


Q ss_pred             CCHHHHHHHHHH
Q 030524          157 FNIKLCCHTLNS  168 (175)
Q Consensus       157 ~~v~~~f~~l~~  168 (175)
                      +|++++|++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.97  E-value=2.4e-29  Score=168.39  Aligned_cols=151  Identities=23%  Similarity=0.314  Sum_probs=120.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|++|+|||||+++++++. .....++.+.+...  +...  ...+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999887 33445555544332  2333  4679999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      +++++++.....|+..+..... .+.|+++++||+|+.+..  ..++..+...     ...++++++|+++|.|+.++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            9999999999888888776543 689999999999986533  3333333332     2346899999999999999999


Q ss_pred             HHHH
Q 030524          165 TLNS  168 (175)
Q Consensus       165 ~l~~  168 (175)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.97  E-value=9.1e-30  Score=170.55  Aligned_cols=151  Identities=22%  Similarity=0.327  Sum_probs=114.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|++|+|||||++++..+.+.. ..++.+.+..  .+..  ....+.+||+||++.+...+..++..+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776543 3455554433  2222  34689999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      ++++.++.....++..+.... ..+.|+++++||+|+.+..  ...+.....     ...+++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            999988887766666554432 2579999999999985432  222322211     12235799999999999999999


Q ss_pred             HHHH
Q 030524          165 TLNS  168 (175)
Q Consensus       165 ~l~~  168 (175)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=2.4e-28  Score=165.93  Aligned_cols=141  Identities=65%  Similarity=1.009  Sum_probs=128.7

Q ss_pred             CCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhc
Q 030524           32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER  111 (175)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  111 (175)
                      +.+.+.+.+|.+.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            34567788999999988888899999999999999999999999999999999999999999999999999999998776


Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       112 ~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      .++.|+++|+||+|+.+.+.+...++..++..+++.++++||++|.|+.++|++|.+.+..
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6789999999999997777788888999999999999999999999999999999988743

>PLN00023 GTP-binding protein; Provisional

Probab=99.97  E-value=1.5e-28  Score=177.94  Aligned_cols=141  Identities=21%  Similarity=0.368  Sum_probs=122.3

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-------------eEEEEEEEeCCCccccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------RTVRLQLWDTAGQERFR   72 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~   72 (175)
                      ....+||+++|+.|||||||+++++.+.+...+.++.+.++..+.+.+++             ..+.+.|||++|+++|.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            34569999999999999999999999988888889998888777666542             46789999999999999


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC---C---CCH
Q 030524           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG------------SDVIIVLVGNKTDLVEKR---Q---VSI  134 (175)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~iiv~nk~D~~~~~---~---~~~  134 (175)
                      .++..+++++|++|+|||++++++|+.+..|+..+.....            .++|+++|+||+|+.+.+   .   +..
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~  177 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV  177 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence            9999999999999999999999999999999999987631            358999999999996542   2   357


Q ss_pred             HHHHHHHHhcCC
Q 030524          135 EEGEAKSRELNV  146 (175)
Q Consensus       135 ~~~~~~~~~~~~  146 (175)
                      ++++++++++++
T Consensus       178 e~a~~~A~~~g~  189 (334)
T PLN00023        178 DAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHcCC
Confidence            899999999885

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=3.4e-28  Score=166.74  Aligned_cols=156  Identities=18%  Similarity=0.241  Sum_probs=121.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+.+.  ..+..+  .+.+.+||+||++.+...+..++.++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45699999999999999999999987543 3344444332  222333  367899999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh------------cCCeEEEecc
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA  153 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~  153 (175)
                      +|+|+++++++.....++..+..... .+.|+++++||+|+..  ....++.+.....            ..+.+++|||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            99999999999998888887765422 5799999999999853  3445555443311            2336899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 030524          154 KAGFNIKLCCHTLNSL  169 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~  169 (175)
                      ++|.|++++++||.++
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=1.1e-27  Score=154.19  Aligned_cols=163  Identities=20%  Similarity=0.317  Sum_probs=133.1

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ..+.++|.++|..||||||++++|.+.. .+...|+.++..  +....  +.+++.+||.+|+...++.|+.|+.+.|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I--ktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI--KTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee--EEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4458999999999999999999998866 445566666443  33333  447899999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCC----HHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS----IEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      |+|+|.+|+.++++....+..+..... .+.|+++++||.|+.......    ..+.+.+++...++++.||+.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            999999999999999888888877544 678999999999986332211    123445567778999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      +.++||+..+++.
T Consensus       168 ~gidWL~~~l~~r  180 (185)
T KOG0073|consen  168 EGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.96  E-value=1e-27  Score=160.07  Aligned_cols=152  Identities=24%  Similarity=0.387  Sum_probs=121.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      .|+++|++|+|||||++++.+..+..++.++.+.+...  ...++  +.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37899999999999999999998888888887766543  22333  689999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHHHHHH
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      +++++++.....|+..+..... .++|+++++||+|+.+...  ..+.....     ....++++++|+++|.|+.++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            9999999888887777765432 5789999999999864332  22222111     22346889999999999999999


Q ss_pred             HHHH
Q 030524          165 TLNS  168 (175)
Q Consensus       165 ~l~~  168 (175)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.96  E-value=2.2e-27  Score=161.98  Aligned_cols=155  Identities=18%  Similarity=0.216  Sum_probs=114.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC-------CCCcccc------cceeeEEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSKTMYL-----EDRTVRLQLWDTAGQERFR   72 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~   72 (175)
                      +|+++|++++|||||+++|++..       ....+.+      +.+.+........     ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998732       1111211      2233333332222     5667889999999999999


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC---eEE
Q 030524           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MFI  149 (175)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~---~~~  149 (175)
                      ..+..++..+|++|+|+|++++.+++....|....    ..++|+++++||+|+.+..  .......+++.+++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999877666665554322    2468999999999985422  12233455666665   489


Q ss_pred             EeccCCCCCHHHHHHHHHHHHh
Q 030524          150 ETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      ++||++|+|++++|+++.+.+.
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhCC
Confidence            9999999999999999988753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=7.2e-27  Score=157.87  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=107.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---------ccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPSYIR   80 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~   80 (175)
                      .+|+++|++|+|||||++++.+........+..+.+......  ......+.+|||||+.....         .......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999976543222211222222222  22346899999999742110         0111112


Q ss_pred             CCcEEEEEEECCChhhH--HhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           81 DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                      .+|++++|+|++++.++  +....|+..+.... .+.|+++++||+|+.+.....  +...++...+++++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            36899999999987654  55667777776543 479999999999986543322  24555565678999999999999


Q ss_pred             HHHHHHHHHHHH
Q 030524          159 IKLCCHTLNSLI  170 (175)
Q Consensus       159 v~~~f~~l~~~~  170 (175)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.95  E-value=2.6e-26  Score=152.93  Aligned_cols=158  Identities=27%  Similarity=0.407  Sum_probs=128.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||++++........+.++.+.+........++..+.+.+||+||+.++...+..+.++++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887777777888777777677777778899999999999999988889999999999


Q ss_pred             EECCCh-hhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           89 YDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        89 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++|+.+|.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999877 6666654 66666666554489999999999986543 23333344444445689999999999999999986


Q ss_pred             H
Q 030524          167 N  167 (175)
Q Consensus       167 ~  167 (175)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.95  E-value=2e-26  Score=156.45  Aligned_cols=153  Identities=22%  Similarity=0.358  Sum_probs=117.5

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....++|+++|++|+|||||++++.+.... ...++.+.+..  .+..++  ..+.+||++|+..+...+..++.++|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            345799999999999999999999987543 34455554332  333444  5689999999998888888999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--------CeEEEeccCCC
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAG  156 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~  156 (175)
                      ++|+|+++..++.....++..+..... .++|+++++||+|+.+..  ...+   .....+        ++++++||++|
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEE---IAEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHH---HHHHcCCcccCCCeEEEEEeECCCC
Confidence            999999999999888887777665432 579999999999985432  2222   222222        24789999999


Q ss_pred             CCHHHHHHHHHH
Q 030524          157 FNIKLCCHTLNS  168 (175)
Q Consensus       157 ~~v~~~f~~l~~  168 (175)
                      +|++++|+||.+
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.95  E-value=9.9e-27  Score=157.42  Aligned_cols=157  Identities=15%  Similarity=0.131  Sum_probs=110.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCCc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS   83 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   83 (175)
                      +|+++|.+|+|||||+++|.+........+..+.+........++. ..+.+|||||...    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999876532111111111211122223332 4789999999632    22223333   34699


Q ss_pred             EEEEEEECCCh-hhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEeccCCCCCH
Q 030524           84 VAVVVYDVASR-QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI  159 (175)
Q Consensus        84 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v  159 (175)
                      ++++|+|++++ ++++.+..|.+.+.....  ...|+++++||+|+.+.... ......+... .+++++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 789888889888876542  46899999999998654433 3334444555 3788999999999999


Q ss_pred             HHHHHHHHHH
Q 030524          160 KLCCHTLNSL  169 (175)
Q Consensus       160 ~~~f~~l~~~  169 (175)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4e-27  Score=155.23  Aligned_cols=161  Identities=20%  Similarity=0.286  Sum_probs=134.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      ......+|+++|-.++||||++.+|..+..... .||.++......+.    .+.+.+||.+|+++++..|++|+.+.++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcE
Confidence            355789999999999999999999988876655 88888776655543    5789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-----cCCeEEEeccCCCCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFN  158 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~  158 (175)
                      +|||+|.+|++++.+.+..+..+..+.. .+.|+++++||.|+..+..  ..+.......     ..+.+-.|+|.+|+|
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            9999999999999999999998888765 7899999999999865433  3344333332     345688899999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030524          159 IKLCCHTLNSLITV  172 (175)
Q Consensus       159 v~~~f~~l~~~~~~  172 (175)
                      +.+.++|+.+.+..
T Consensus       166 L~egl~wl~~~~~~  179 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988764

>cd01878 HflX HflX subfamily

Probab=99.95  E-value=1.7e-26  Score=160.85  Aligned_cols=155  Identities=19%  Similarity=0.220  Sum_probs=112.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY   78 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~   78 (175)
                      ..++|+++|++|||||||++++++........+..+.+.....+..++. ..+.+||+||...         +...+ ..
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~  117 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE  117 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence            3589999999999999999999997643322222233333334444443 2689999999732         11111 23


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                      +.++|++++|+|++++.++.....|...+......+.|+++|+||+|+.+....     ...+...+.+++++|+++|.|
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~g  192 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEG  192 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCC
Confidence            568999999999999988887777776665544467999999999998653321     134455667999999999999


Q ss_pred             HHHHHHHHHHH
Q 030524          159 IKLCCHTLNSL  169 (175)
Q Consensus       159 v~~~f~~l~~~  169 (175)
                      +.++|++|.+.
T Consensus       193 i~~l~~~L~~~  203 (204)
T cd01878         193 LDELLEAIEEL  203 (204)
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=6.8e-26  Score=167.21  Aligned_cols=162  Identities=14%  Similarity=0.085  Sum_probs=117.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS   82 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   82 (175)
                      -.|+|+|.||||||||++++..........+..+.....-.+... +...+.+||+||..+-       ...+-..++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            468999999999999999999765332222222333333333332 2246899999996321       11223345679


Q ss_pred             cEEEEEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      +++++|+|++++++++.+..|..++..+..  .+.|+++|+||+|+.+.........+.++...+++++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999988889999999998887643  478999999999986554444344555556667899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++|++|.+.+..
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887754

>cd04171 SelB SelB subfamily

Probab=99.94  E-value=4.3e-26  Score=153.27  Aligned_cols=151  Identities=19%  Similarity=0.125  Sum_probs=104.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .|+++|++|+|||||+++|.+..   +..++.+..+.+.........+ ...+.+|||||++++......++.++|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            68999999999999999999643   2223333334444334444442 3579999999999888777778889999999


Q ss_pred             EEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHh---cCCeEEEeccCCCCCH
Q 030524           88 VYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRE---LNVMFIETSAKAGFNI  159 (175)
Q Consensus        88 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~v  159 (175)
                      |+|+++   +++.+.+    ..+. .. ...|+++++||+|+.+...  ....+..+..+.   .+.+++++|+++|+|+
T Consensus        81 V~d~~~~~~~~~~~~~----~~~~-~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (164)
T cd04171          81 VVAADEGIMPQTREHL----EILE-LL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI  154 (164)
T ss_pred             EEECCCCccHhHHHHH----HHHH-Hh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence            999987   3333222    2221 11 2248999999999864321  112333444444   4679999999999999


Q ss_pred             HHHHHHHHH
Q 030524          160 KLCCHTLNS  168 (175)
Q Consensus       160 ~~~f~~l~~  168 (175)
                      +++|+.+.+
T Consensus       155 ~~l~~~l~~  163 (164)
T cd04171         155 EELKEYLDE  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.94  E-value=2.2e-25  Score=156.78  Aligned_cols=164  Identities=40%  Similarity=0.571  Sum_probs=135.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|+.|+|||||+++|.+..+...+.++.+..+........+..+++.+||++|+++++..+..|+.++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999999999988777777777776688999999999999999999999999999999


Q ss_pred             EECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHhc---CCeEEEec
Q 030524           89 YDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSREL---NVMFIETS  152 (175)
Q Consensus        89 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~s  152 (175)
                      ||..+.. .++....|...+........|+++++||+|+....            ..........+...   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            9999954 55557888888887766679999999999997653            22222222222222   33589999


Q ss_pred             cC--CCCCHHHHHHHHHHHHhh
Q 030524          153 AK--AGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       153 ~~--~~~~v~~~f~~l~~~~~~  172 (175)
                      ++  .+.++.++|..+.+.+..
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHH
Confidence            99  999999999998887753

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.94  E-value=2.7e-25  Score=146.79  Aligned_cols=153  Identities=46%  Similarity=0.741  Sum_probs=123.5

Q ss_pred             EECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECC
Q 030524           14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        14 l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   92 (175)
                      ++|++|+|||||++++.+... .....++. .+..............+.+||+||+..+...+..+++++|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999877 45555555 7777777777777889999999999888888888899999999999999


Q ss_pred             ChhhHHhHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           93 SRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        93 ~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ++.++.....|+ .........++|+++++||+|+.......... ........+++++++|+..+.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988888773 23333344789999999999986544333322 4455556678999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.94  E-value=2.7e-26  Score=151.05  Aligned_cols=134  Identities=20%  Similarity=0.278  Sum_probs=99.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCCcEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA   85 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   85 (175)
                      ||+++|++|+|||||++++.+....  +.++.+.++       .     -.+||+||+.     .+..... .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            7999999999999999999987542  223322221       1     1689999972     2333333 47899999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~  164 (175)
                      |+|||++++.++.. ..|....      ..|+++++||+|+.+ .....++.++++...+. +++++||++|.|++++|.
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988765 2343221      249999999999864 34455666777777776 899999999999999999


Q ss_pred             HHH
Q 030524          165 TLN  167 (175)
Q Consensus       165 ~l~  167 (175)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.94  E-value=5.8e-25  Score=140.34  Aligned_cols=166  Identities=25%  Similarity=0.308  Sum_probs=140.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC--CcccccceeeEEEEEE-EECCeEEEEEEEeCCCcccc-cccccccccCCc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSS   83 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d   83 (175)
                      +..|++++|..++|||+++++++.+...  .++.+|.. +.+...+ +-++-.-.++++||.|...+ ..+-++|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            4589999999999999999999876543  45677776 4444444 44555678999999997766 567789999999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      ++++||+..|++||+.+......+.+... +.+|+++++||+|+.++++++.+.+..||++..++++++++.+...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999998777777766554 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 030524          163 CHTLNSLITVCI  174 (175)
Q Consensus       163 f~~l~~~~~~~~  174 (175)
                      |.++...+....
T Consensus       167 f~~l~~rl~~pq  178 (198)
T KOG3883|consen  167 FTYLASRLHQPQ  178 (198)
T ss_pred             HHHHHHhccCCc
Confidence            999998876543

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=3.3e-25  Score=149.65  Aligned_cols=157  Identities=18%  Similarity=0.142  Sum_probs=108.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      .|+++|++|+|||||+++|....+.....+..+.+........+ +....+.+|||||++.+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887665444444434433343333 23567999999999999888888899999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHH------HhcCCeEEEeccCCCCCHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKS------RELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~------~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      |++++..-+ ....+..+..   .++|+++++||+|+....... ......+.      ...+++++++|+++|+|+.++
T Consensus        82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998743211 1112222222   468999999999986332111 11111111      112368999999999999999


Q ss_pred             HHHHHHHHh
Q 030524          163 CHTLNSLIT  171 (175)
Q Consensus       163 f~~l~~~~~  171 (175)
                      |++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.93  E-value=8.1e-25  Score=146.27  Aligned_cols=148  Identities=19%  Similarity=0.227  Sum_probs=110.0

Q ss_pred             EECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCCcEE
Q 030524           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVA   85 (175)
Q Consensus        14 l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~   85 (175)
                      ++|.+|+|||||++++.+........+..+.+.....+..++  ..+.+|||||+..+...      +..++  +++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998764444445555555555555655  46899999998776542      45555  499999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      ++|+|+++++...   .+...+..   .++|+++++||+|+.+...... ....++..++++++++|+.+|.|+.++|.+
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998765432   33333332   3689999999999865544333 345677778899999999999999999999


Q ss_pred             HHHHH
Q 030524          166 LNSLI  170 (175)
Q Consensus       166 l~~~~  170 (175)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            88764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=9.7e-26  Score=156.64  Aligned_cols=153  Identities=22%  Similarity=0.267  Sum_probs=104.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC-----------cccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLI   75 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~   75 (175)
                      ...++|+++|++|+|||||++++.+..+.....+..  +.........    .+.+|||||           ++.++..+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            456899999999999999999999877554444433  3333333322    589999999           45666666


Q ss_pred             ccccc----CCcEEEEEEECCChhhHHhHHHH-----------HHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 030524           76 PSYIR----DSSVAVVVYDVASRQSFLNTSKW-----------IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK  140 (175)
Q Consensus        76 ~~~~~----~~d~~i~v~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~  140 (175)
                      ..++.    .++++++|+|.++...+  ...|           +.....  ..++|+++++||+|+.+..   .....++
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--~~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLR--ELGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHH--HcCCCeEEEEECccccCcH---HHHHHHH
Confidence            55554    45788888887543211  0111           111111  2479999999999986433   3345555


Q ss_pred             HHhcCC---------eEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          141 SRELNV---------MFIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       141 ~~~~~~---------~~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      +..+++         +++++||++| |++++|++|.+.+...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            666654         4899999999 9999999999886553

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.93  E-value=2.6e-25  Score=153.69  Aligned_cols=148  Identities=17%  Similarity=0.228  Sum_probs=104.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc--CCCCCcc------------cccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   75 (175)
                      .+|+++|.+|+|||||+++|+.  +.+...+            ..+.+.+.......++.....+.+|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            5899999999999999999997  3333222            1223444444444455556789999999999999999


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------hcCCe
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM  147 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~-------~~~~~  147 (175)
                      ..++.++|++++|+|+++.. +.....++.....   .++|+++++||+|+.+.... ...+...+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2233333333322   47899999999998643221 1233333332       23679


Q ss_pred             EEEeccCCCCCHHH
Q 030524          148 FIETSAKAGFNIKL  161 (175)
Q Consensus       148 ~~~~s~~~~~~v~~  161 (175)
                      ++++|+++|.|+.+
T Consensus       159 iv~~Sa~~g~~~~~  172 (194)
T cd01891         159 VLYASAKNGWASLN  172 (194)
T ss_pred             EEEeehhccccccc
Confidence            99999999987643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=3.1e-25  Score=146.09  Aligned_cols=148  Identities=21%  Similarity=0.273  Sum_probs=105.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc------ccccccccc--cC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------FRSLIPSYI--RD   81 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~--~~   81 (175)
                      ++|+++|.||+|||||+|+|++........+..+++.....+...+  ..+.++|+||--.      -......++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999886655566677777766776666  5689999999311      122334444  58


Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      .|++|+|.|+++.+.-..+   ..++..   .++|+++++||+|..+...... ....+.+.+++|++.+||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l~l---~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLYL---TLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHH---HHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHHHH---HHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            9999999999875432222   222322   4799999999999865444333 36677888999999999999999999


Q ss_pred             HHHHH
Q 030524          162 CCHTL  166 (175)
Q Consensus       162 ~f~~l  166 (175)
                      +++.+
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98864

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.93  E-value=2.6e-24  Score=158.75  Aligned_cols=158  Identities=17%  Similarity=0.145  Sum_probs=113.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc----ccccc---cccC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----SLIPS---YIRD   81 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~---~~~~   81 (175)
                      -.|+++|.||+|||||++++...... ..+..+ +.......+..++ ...+.+||+||..+..    .+...   .+.+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fT-T~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT-TLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCC-ccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            57899999999999999999986533 222222 2233333333433 3578999999964321    22222   3457


Q ss_pred             CcEEEEEEECCCh---hhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524           82 SSVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (175)
Q Consensus        82 ~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (175)
                      ++++++|+|+++.   ++++.+..|.+++..+..  .+.|+++|+||+|+.++.. .....+.++...+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   677788888877766543  4789999999999865432 233445566667889999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 030524          157 FNIKLCCHTLNSLI  170 (175)
Q Consensus       157 ~~v~~~f~~l~~~~  170 (175)
                      +|++++|+++.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.93  E-value=1.2e-24  Score=139.13  Aligned_cols=114  Identities=32%  Similarity=0.561  Sum_probs=89.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC--CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ||+++|++|||||||+++|++....  ....+..+.+..............+.+||++|++.+...+...+.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998765  22333444455555667777777799999999999888888889999999999


Q ss_pred             EECCChhhHHhHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 030524           89 YDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                      ||++++++++.+..+   +..+... ..++|+++++||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence            999999999997555   4544443 35699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=3.2e-24  Score=159.53  Aligned_cols=153  Identities=20%  Similarity=0.186  Sum_probs=109.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI   79 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~   79 (175)
                      .++|+++|.+|+|||||+|+|++........+..+.+.....+..++. ..+.+|||+|..         .|...+ ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            489999999999999999999997644333333334555556666432 378999999962         222222 247


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      .++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+...     ..... ....+++.+||++|.|+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCCH
Confidence            8999999999999998877776665555443335789999999999854221     11111 22346899999999999


Q ss_pred             HHHHHHHHHH
Q 030524          160 KLCCHTLNSL  169 (175)
Q Consensus       160 ~~~f~~l~~~  169 (175)
                      ++++++|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.92  E-value=1.9e-24  Score=146.91  Aligned_cols=155  Identities=18%  Similarity=0.143  Sum_probs=107.3

Q ss_pred             EECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCCcEEE
Q 030524           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLI---PSYIRDSSVAV   86 (175)
Q Consensus        14 l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~d~~i   86 (175)
                      ++|++|||||||+++|.+........+..+.+........++ ...+.+||+||..+    ...++   ...+.++|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998764211122222222223333331 35689999999632    22222   23467899999


Q ss_pred             EEEECCCh------hhHHhHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEecc
Q 030524           87 VVYDVASR------QSFLNTSKWIDEVRTERG-------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (175)
Q Consensus        87 ~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (175)
                      +|+|++++      .+++....|...+.....       .+.|+++++||+|+..................+.+++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      577777777777765432       37999999999998654443332233444555678999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 030524          154 KAGFNIKLCCHTLNSL  169 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~  169 (175)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.92  E-value=1.4e-23  Score=160.10  Aligned_cols=151  Identities=22%  Similarity=0.217  Sum_probs=114.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (175)
                      ..++|+++|++|+|||||+|+|++... .....+..+.+.....+..++  ..+.+|||||..++...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998653 223344555677777777776  45799999997654432        2357


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                      ++++|++++|+|++++.+++..  |+..+..   .++|+++|+||+|+.+.      ....++..++++++++|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999998877664  5555432   46899999999998543      12345666778899999997 69


Q ss_pred             HHHHHHHHHHHHhh
Q 030524          159 IKLCCHTLNSLITV  172 (175)
Q Consensus       159 v~~~f~~l~~~~~~  172 (175)
                      +.++|+.|.+.+..
T Consensus       348 I~~~~~~L~~~i~~  361 (442)
T TIGR00450       348 IKALVDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=1.7e-23  Score=139.53  Aligned_cols=146  Identities=22%  Similarity=0.219  Sum_probs=106.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR   80 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   80 (175)
                      ++|+++|++|+|||||++++++.... ....+..+.+........++  ..+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987532 22233333344444444443  46899999997654332        234567


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      ++|++++|+|++++.+......+..      ..+.|+++++||+|+.+....       .....+.+++++|++++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998877666544332      357999999999998654433       334456799999999999999


Q ss_pred             HHHHHHHHHH
Q 030524          161 LCCHTLNSLI  170 (175)
Q Consensus       161 ~~f~~l~~~~  170 (175)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=2.1e-23  Score=154.83  Aligned_cols=158  Identities=21%  Similarity=0.297  Sum_probs=107.1

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-cccc-------
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLI-------   75 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~-------   75 (175)
                      ++.+.++|+++|.+|+|||||+|+|++..+.. ...+..+.+.....+..++  .++.+|||||..+. ..+.       
T Consensus        48 ~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~  125 (339)
T PRK15494         48 SNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA  125 (339)
T ss_pred             cccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence            34566899999999999999999999876542 1111222233333444554  46899999997432 2211       


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEec
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETS  152 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s  152 (175)
                      ...+.++|++++|+|..+  ++..... |+..+..   .+.|.++++||+|+.+.   ...+..+++...+  ..++++|
T Consensus       126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iS  197 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPIS  197 (339)
T ss_pred             HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEe
Confidence            123679999999999765  4445433 4443332   24677889999998542   2345555555444  5899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhh
Q 030524          153 AKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~~~  172 (175)
                      |++|.|++++|++|.+.+.+
T Consensus       198 Aktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        198 ALSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             ccCccCHHHHHHHHHHhCCC
Confidence            99999999999999887543

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.2e-23  Score=132.50  Aligned_cols=159  Identities=24%  Similarity=0.372  Sum_probs=129.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|-.++||||++-.|+.+. +....||.++......    .+.+.|.+||.+|+++.+..|++|+....++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            357899999999999999999998765 4455777776544333    35578999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~  160 (175)
                      ||+|..+++.+++.+..+-.+..... .+.|+++.+||.|+..+.  ..+++..+     ++..++.+.++++.+|+|+.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999999999998887777766554 789999999999986543  34444443     34445678899999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      +-|.||.+.+.+
T Consensus       168 eglswlsnn~~~  179 (180)
T KOG0071|consen  168 EGLSWLSNNLKE  179 (180)
T ss_pred             HHHHHHHhhccC
Confidence            999999876543

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=9.5e-24  Score=152.66  Aligned_cols=154  Identities=16%  Similarity=0.109  Sum_probs=103.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD   81 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   81 (175)
                      +|+++|.||+|||||+|+|++..... ...+..+.+... .+...+. .++.+|||||......        .....+.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999976532 112222222222 2222222 4689999999653211        13455789


Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHH
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  160 (175)
                      +|++++|+|++++.+.+  ..++..+..   .+.|+++++||+|+.+.. ........++...+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876654  333333322   468999999999985322 122334444444454 89999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++++++.+.+.+
T Consensus       154 ~L~~~l~~~l~~  165 (270)
T TIGR00436       154 FLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHhCCC
Confidence            999999887643

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.91  E-value=1.8e-23  Score=164.58  Aligned_cols=158  Identities=18%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC-------CCCccc------ccceeeEEEEEEEE-----CCeEEEEEEEeCCCccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQ------ATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQER   70 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~   70 (175)
                      -.+|+++|+.++|||||+++|+...       ....+.      ...++++....+.+     ++..+.+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3589999999999999999998742       111111      12344444433322     45678999999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC---e
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---M  147 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~---~  147 (175)
                      |...+..++..+|++|+|+|++++.+.+....|.....    .++|+++++||+|+.+..  ......++...+++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998777766666654332    468999999999985422  12233455555665   4


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          148 FIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       148 ~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++++||++|.|+.++|+++.+.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCCC
Confidence            8999999999999999999887643

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.91  E-value=1.6e-23  Score=160.61  Aligned_cols=148  Identities=23%  Similarity=0.261  Sum_probs=111.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (175)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++  ..+.+|||||..++...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3589999999999999999999987542 33344444566666666665  46899999997654332        2346


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                      +.++|++++|+|++++.+++....|..      ..+.|+++|+||+|+.+.....        ...+.+++++|+++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999887765544432      3578999999999986433221        34457899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      ++++++++.+.+.
T Consensus       358 I~~L~~~L~~~l~  370 (449)
T PRK05291        358 IDELREAIKELAF  370 (449)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.91  E-value=3.4e-23  Score=162.43  Aligned_cols=154  Identities=19%  Similarity=0.183  Sum_probs=112.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .++.+|+++|++++|||||++++.+..+.....+..+.+.....+..++.. .+.+||||||+.|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            366899999999999999999999877665544445445544455554332 6899999999999999998899999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC---------CeEEEeccCCCC
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF  157 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~  157 (175)
                      +|+|++++..-+.. ..   +......++|+++++||+|+.+.   ..++....+...+         .+++++||++|+
T Consensus       164 LVVda~dgv~~qT~-e~---i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQTI-EA---ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhHH-HH---HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            99999864321111 11   22222257999999999998532   2334444433332         479999999999


Q ss_pred             CHHHHHHHHHH
Q 030524          158 NIKLCCHTLNS  168 (175)
Q Consensus       158 ~v~~~f~~l~~  168 (175)
                      |+.++|+++..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01889 SelB_euk SelB subfamily

Probab=99.91  E-value=9.4e-24  Score=145.69  Aligned_cols=160  Identities=23%  Similarity=0.210  Sum_probs=102.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC----CC---Ccccccceee--EEEEEEE----------ECCeEEEEEEEeCCCccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK----FD---NTYQATIGID--FLSKTMY----------LEDRTVRLQLWDTAGQER   70 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~----~~---~~~~~~~~~~--~~~~~~~----------~~~~~~~~~i~D~~G~~~   70 (175)
                      ++|+++|++|+|||||+++|+...    ..   .+..+..+.+  .....+.          ..+....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999999731    11   1111222222  2222222          123357899999999876


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHH-H-----
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKS-R-----  142 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~-~-----  142 (175)
                      +..........+|++++|+|+++....+....+.  +...  .+.|+++++||+|+......  ...+..... .     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5443334456789999999998754333322221  1122  25799999999998532211  112222211 1     


Q ss_pred             -hcCCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          143 -ELNVMFIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       143 -~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                       ..+++++++|+++|+|+++++++|.+.+...
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence             2357899999999999999999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.91  E-value=1.2e-23  Score=140.74  Aligned_cols=140  Identities=18%  Similarity=0.222  Sum_probs=98.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc----cccccccccccCCcEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV   86 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   86 (175)
                      +|+++|.+|+|||||++++.+.....  ..+.+.       .....    .+||+||..    ++.......+.++|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999987653111  112211       12221    269999962    22222223368999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC--eEEEeccCCCCCHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~~f~  164 (175)
                      +|+|+++++++.  ..|+..+    ..+.|+++++||+|+.+   .......+++.+.++  +++++|+++|+|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999887653  2343332    24678999999999853   234566777777775  999999999999999999


Q ss_pred             HHHHHHhh
Q 030524          165 TLNSLITV  172 (175)
Q Consensus       165 ~l~~~~~~  172 (175)
                      ++.+.+..
T Consensus       141 ~l~~~~~~  148 (158)
T PRK15467        141 YLASLTKQ  148 (158)
T ss_pred             HHHHhchh
Confidence            99887643

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.91  E-value=1.2e-23  Score=134.70  Aligned_cols=166  Identities=23%  Similarity=0.500  Sum_probs=142.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      ++.-++||.++|++..|||||+-.++++.+.+++..+.++++..+.+.+.+..+.+.+||.+|++++..+..-..+.+-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            34457999999999999999999999999888899999999999999999999999999999999999999988899999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----CCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      ++|+||++.++++..+..|+.+-+..-..-+|+ ++++|.|+.-.     .+.....++..|+-.+++.+.||+..+.|+
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv  174 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV  174 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence            999999999999999999999877654444554 67999996322     222344567778888999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 030524          160 KLCCHTLNSLIT  171 (175)
Q Consensus       160 ~~~f~~l~~~~~  171 (175)
                      ..+|..+..++.
T Consensus       175 ~KIFK~vlAklF  186 (205)
T KOG1673|consen  175 QKIFKIVLAKLF  186 (205)
T ss_pred             HHHHHHHHHHHh
Confidence            999998776653

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.91  E-value=2.2e-23  Score=143.18  Aligned_cols=155  Identities=22%  Similarity=0.215  Sum_probs=108.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccc----------------cceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (175)
                      +|+++|.+|+|||||+++|++.........                ..+..........  ....+.+||+||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence            589999999999999999988765433211                1112222222222  2457999999999988888


Q ss_pred             ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHh---------
Q 030524           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE---------  143 (175)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--~~~~~~~~~~---------  143 (175)
                      +..++.++|++++|+|++++.... ...++..+..   .+.|+++++||+|+..+....  ....++....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            889999999999999998765433 2233333332   579999999999986522211  2223333332         


Q ss_pred             -----cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          144 -----LNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       144 -----~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                           ...+++++|++.|.|+.++|+++.+.+.
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                 3468999999999999999999988763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=3.4e-23  Score=138.17  Aligned_cols=147  Identities=20%  Similarity=0.162  Sum_probs=101.3

Q ss_pred             EEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCCc
Q 030524           13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS   83 (175)
Q Consensus        13 ~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d   83 (175)
                      +++|.+|+|||||+++|++.... ....+..+.+........++  ..+.+|||||+..+..        .+...+.++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999986422 11222333333444444444  5689999999877543        3345678899


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLC  162 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~  162 (175)
                      ++++|+|..++.+....  ++......  .+.|+++++||+|+.+....     .......+. +++++|+++|.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRK--SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHh--cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999876444332  22222222  35999999999998653322     233444666 8899999999999999


Q ss_pred             HHHHHHHH
Q 030524          163 CHTLNSLI  170 (175)
Q Consensus       163 f~~l~~~~  170 (175)
                      |+++.+.+
T Consensus       150 ~~~l~~~~  157 (157)
T cd01894         150 LDAILELL  157 (157)
T ss_pred             HHHHHhhC
Confidence            99998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=3e-23  Score=160.39  Aligned_cols=158  Identities=22%  Similarity=0.236  Sum_probs=111.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI-   75 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~-   75 (175)
                      ..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++.  .+.+|||||..          .+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999987642 333455555666666666664  46899999952          222222 


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHH-HHHhcCCeEEEec
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEA-KSRELNVMFIETS  152 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~s  152 (175)
                      ..++.++|++++|+|++++.+++.+. ++..+..   .+.|+++|+||+|+.+....  ...+... +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23578999999999999988877764 3333332   57899999999998642211  1111221 2222346899999


Q ss_pred             cCCCCCHHHHHHHHHHHHh
Q 030524          153 AKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~~  171 (175)
                      |++|.|++++|..+.+.+.
T Consensus       364 Ak~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        364 AKTGRAVDKLVPALETALE  382 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987664

>PRK11058 GTPase HflX; Provisional

Probab=99.91  E-value=5.3e-23  Score=156.24  Aligned_cols=157  Identities=20%  Similarity=0.187  Sum_probs=109.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc--cccc------cccccC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD   81 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~------~~~~~~   81 (175)
                      .+|+++|.+|+|||||+|+|++........+..+.+.....+...+.. .+.+|||+|..+.  ...+      ...+.+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999999876543333334445555555555432 5789999997331  1122      233678


Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe-EEEeccCCCCCHH
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK  160 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~  160 (175)
                      +|++++|+|++++.+++.+..|...+......++|+++|+||+|+.+...   ....  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999998777765544444333335799999999999854211   1111  1123454 5889999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++++++.+.+..
T Consensus       352 eL~e~I~~~l~~  363 (426)
T PRK11058        352 LLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987753

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.8e-22  Score=151.63  Aligned_cols=156  Identities=19%  Similarity=0.163  Sum_probs=111.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPSY---IRDS   82 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~   82 (175)
                      .|+++|.||||||||+++++..... ..+..+ +.+...-.+..+ ....+.+||+||..+.    ..+...+   +.++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT-Tl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT-TLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcc-eeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            7999999999999999999986543 222222 222222223333 1346999999996431    1222333   4569


Q ss_pred             cEEEEEEECCCh---hhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524           83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (175)
Q Consensus        83 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (175)
                      +++++|+|+++.   ++++....|..++..+..  .+.|.++|+||+|+.+    .....+.+...++.+++++||++++
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   567777777777776543  4789999999999832    2344556666677889999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 030524          158 NIKLCCHTLNSLITV  172 (175)
Q Consensus       158 ~v~~~f~~l~~~~~~  172 (175)
                      |++++++++.+.+..
T Consensus       314 GI~eL~~~L~~~l~~  328 (424)
T PRK12297        314 GLDELLYAVAELLEE  328 (424)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999887643

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=1e-22  Score=140.82  Aligned_cols=163  Identities=19%  Similarity=0.173  Sum_probs=106.2

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFR   72 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~   72 (175)
                      ++.....++|+++|++|+|||||++++++..+.....++.+.+........   ...+.+|||||..          ++.
T Consensus        18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~   94 (196)
T PRK00454         18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ   94 (196)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence            344556799999999999999999999987644444444333322222222   2578999999942          333


Q ss_pred             ccccccccC---CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHhcCCe
Q 030524           73 SLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVM  147 (175)
Q Consensus        73 ~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~~~~~~~  147 (175)
                      .....++..   .+++++++|.+++.+...  .++......  .+.|+++++||+|+....+.  ..............+
T Consensus        95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~  170 (196)
T PRK00454         95 KLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE  170 (196)
T ss_pred             HHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence            344445544   467888899876543322  122222222  46889999999998543221  122233444444679


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          148 FIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       148 ~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++++|+++|+|++++|+.|.+.+.+
T Consensus       171 ~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        171 VILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999877654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.1e-22  Score=157.25  Aligned_cols=153  Identities=17%  Similarity=0.151  Sum_probs=107.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYI   79 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   79 (175)
                      ..+|+++|.+|||||||+|+|++.... ....+..+.+........++.  .+.+|||||.+.        +...+..++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999987542 233444444555555555553  588999999752        333456678


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCC
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (175)
                      .++|++|+|+|++++.++.. ..+...+..   .++|+++|+||+|+....   ....+.+  ..+. ..+++||++|.|
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g  186 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG  186 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence            89999999999998765432 233333332   479999999999985321   1122222  2343 347999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030524          159 IKLCCHTLNSLITV  172 (175)
Q Consensus       159 v~~~f~~l~~~~~~  172 (175)
                      +.++|+++.+.+..
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999887643

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.90  E-value=4.4e-24  Score=135.40  Aligned_cols=154  Identities=25%  Similarity=0.369  Sum_probs=127.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ...+.++|-.+||||||+|....+.+.....|+.+++.+..+    ...+.+.+||.+|+..|+.+|..|.+.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            578999999999999999998888888888999987655443    3456899999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--------CeEEEeccCCCCCH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAGFNI  159 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~v  159 (175)
                      +|+.+++.+...+..+..+..... .++|+++++||.|+..+.  ..   +.+..+.|        +..|.+|+++..++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~---~~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SK---IALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cH---HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence            999999988888887777765543 789999999999975432  22   22333333        45789999999999


Q ss_pred             HHHHHHHHHHHh
Q 030524          160 KLCCHTLNSLIT  171 (175)
Q Consensus       160 ~~~f~~l~~~~~  171 (175)
                      +-..+||++...
T Consensus       171 d~~~~Wli~hsk  182 (186)
T KOG0075|consen  171 DITLDWLIEHSK  182 (186)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988643

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=6.5e-22  Score=133.84  Aligned_cols=155  Identities=21%  Similarity=0.237  Sum_probs=103.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP   76 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   76 (175)
                      +++|+++|++|+|||||++++++.... ....+..+..........++.  .+.+||+||..+...           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            589999999999999999999986532 222222322333334444443  478999999653311           112


Q ss_pred             ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHHHhc----CCeEEEe
Q 030524           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSREL----NVMFIET  151 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~-~~~~~~~----~~~~~~~  151 (175)
                      ..+.++|++++|+|++++.+..... ++....   ..+.|+++++||+|+.+......+.. ....+..    +.+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3457899999999999887655432 222222   24689999999999865432222222 2222333    3689999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 030524          152 SAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~  169 (175)
                      |+++++|+.++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=99.90  E-value=2.4e-22  Score=135.03  Aligned_cols=157  Identities=17%  Similarity=0.146  Sum_probs=103.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYI   79 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   79 (175)
                      ...+|+++|++|+|||||++++++.............. .............+.+||+||......        .....+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            46789999999999999999999875432211111111 111112223346789999999654322        234457


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCC
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN  158 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  158 (175)
                      .++|++++|+|++++.+. ....+...+..   .+.|+++++||+|+.............+....+ .+++++|++++.+
T Consensus        81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          81 KDVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             HhCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            889999999999987211 12222233322   268999999999986433333334444444443 6899999999999


Q ss_pred             HHHHHHHHHHH
Q 030524          159 IKLCCHTLNSL  169 (175)
Q Consensus       159 v~~~f~~l~~~  169 (175)
                      ++++|++|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999998775

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.3e-23  Score=136.90  Aligned_cols=166  Identities=20%  Similarity=0.281  Sum_probs=127.3

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCC------C-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDK------F-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP   76 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   76 (175)
                      |.....+.|+++|+.++|||||+.++....      . .....++.+.......  +.  ...+.+||..|++..+++|.
T Consensus        12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw~   87 (197)
T KOG0076|consen   12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLWK   87 (197)
T ss_pred             HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHHH
Confidence            344567899999999999999999875432      1 1233445554443333  33  35799999999999999999


Q ss_pred             ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCC-HHHHH---HHHHhcCCeEEEe
Q 030524           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS-IEEGE---AKSRELNVMFIET  151 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~-~~~~~---~~~~~~~~~~~~~  151 (175)
                      .||..+|++|+++|++|++.|+.....++.+..+.. .++|+++.+||.|+.+..++. .+...   ....+..+++.++
T Consensus        88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccc
Confidence            999999999999999999999998888888777665 799999999999986543322 11111   2223345799999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhhh
Q 030524          152 SAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      |+..|+|+++...|+...+..+
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999887765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=6.5e-22  Score=151.86  Aligned_cols=157  Identities=19%  Similarity=0.201  Sum_probs=107.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----------   75 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   75 (175)
                      ..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++.  .+.+|||||..++....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            4589999999999999999999986532 222333334444444445543  68999999975543321           


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-Hh----cCCeEEE
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-RE----LNVMFIE  150 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-~~----~~~~~~~  150 (175)
                      ..++..+|++|+|+|++++.+.+... ++..+..   .+.|+++++||+|+.+. .....+..... ..    .++++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence            23578999999999999886665543 2222222   46899999999998621 11112222121 12    2479999


Q ss_pred             eccCCCCCHHHHHHHHHHHHh
Q 030524          151 TSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +||++|.|+.++|+++.+.+.
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.90  E-value=2e-22  Score=158.65  Aligned_cols=156  Identities=21%  Similarity=0.186  Sum_probs=113.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      +.|+++|++++|||||+++|.+..   +..++.+..+.+.....+..++  ..+.+||+||+++|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999733   3344455556665555555555  67999999999999988888899999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHhc----CCeEEEeccCCCCCH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSREL----NVMFIETSAKAGFNI  159 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~~~v  159 (175)
                      +|+|++++.. .....++..+ ..  .++| +++++||+|+.+....  ...+...++...    +++++++|+++|+|+
T Consensus        79 LVVDa~~G~~-~qT~ehl~il-~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI  154 (581)
T TIGR00475        79 LVVDADEGVM-TQTGEHLAVL-DL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI  154 (581)
T ss_pred             EEEECCCCCc-HHHHHHHHHH-HH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence            9999987321 1122222222 22  3577 9999999998654322  123444555544    578999999999999


Q ss_pred             HHHHHHHHHHHh
Q 030524          160 KLCCHTLNSLIT  171 (175)
Q Consensus       160 ~~~f~~l~~~~~  171 (175)
                      .+++..+.+.+.
T Consensus       155 ~eL~~~L~~l~~  166 (581)
T TIGR00475       155 GELKKELKNLLE  166 (581)
T ss_pred             hhHHHHHHHHHH
Confidence            999998876553

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.90  E-value=1.6e-22  Score=140.63  Aligned_cols=161  Identities=18%  Similarity=0.180  Sum_probs=101.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCC---CCcccccceeeEE--EEEEE-----------------------EC--C----
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFL--SKTMY-----------------------LE--D----   55 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~--~~~~~-----------------------~~--~----   55 (175)
                      ++|+++|+.|+|||||+..+.+...   ..+.....+....  .....                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999976421   1111111111111  00000                       00  1    


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--C
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S  133 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~  133 (175)
                      ....+.||||||++.+...+...+.++|++++|+|++++.........+..+.. . ...|+++++||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~-~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-M-GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-c-CCCcEEEEEEchhccCHHHHHHH
Confidence            125789999999998888887788899999999999874211112222222222 1 22478899999998642211  1


Q ss_pred             HHHHHHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          134 IEEGEAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       134 ~~~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      .++.+.+....   +++++++||++|+|++++|+++.+.+..
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            12333333332   5789999999999999999999886643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.89  E-value=2.3e-22  Score=160.09  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=111.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceee--EEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      .+..+|+++|++++|||||+++|..........+..+.+  .+...+..++....+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            356899999999999999999999876554433333322  233333334456789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-------HHhcC--CeEEEeccCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-------SRELN--VMFIETSAKA  155 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~~~  155 (175)
                      +|+|+|++++...+.... +..+   ...++|+++++||+|+.+..   .+.....       ...++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            999999987532222211 1222   22579999999999986422   2222222       22233  6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 030524          156 GFNIKLCCHTLNSLI  170 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~  170 (175)
                      |.|+.++|+++....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999987653

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.9e-23  Score=135.26  Aligned_cols=163  Identities=30%  Similarity=0.524  Sum_probs=144.1

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....++++++|..|.|||++..+.+.+.+...+.++.++..+......+...+++..|||+|++.+..+...|+-+..+.
T Consensus         7 ~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA   86 (216)
T KOG0096|consen    7 QGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA   86 (216)
T ss_pred             ccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence            34579999999999999999999999999999999999988887776665678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      |++||++.+-++.++.+|...+.+.+. ++|+++++||.|.....  .......+.+..++.+++.|++++-|.+.-|.|
T Consensus        87 iimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~  163 (216)
T KOG0096|consen   87 IIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW  163 (216)
T ss_pred             EEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHH
Confidence            999999999999999999999998885 59999999999974332  233455567777899999999999999999999


Q ss_pred             HHHHHh
Q 030524          166 LNSLIT  171 (175)
Q Consensus       166 l~~~~~  171 (175)
                      +.+++.
T Consensus       164 LarKl~  169 (216)
T KOG0096|consen  164 LARKLT  169 (216)
T ss_pred             Hhhhhc
Confidence            988764

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.89  E-value=4.7e-22  Score=159.61  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=110.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .++..|+++|+.++|||||+++|....+........+.+.....+..++  ..+.|||||||+.|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4678999999999999999999988766554444444444444444554  56899999999999999998899999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-------HHHhcC--CeEEEeccCCCC
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-------KSRELN--VMFIETSAKAGF  157 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~~~~  157 (175)
                      +|+|++++..-+..    ..+......++|+++++||+|+.+..   ......       ++..++  ++++++||++|.
T Consensus       366 LVVdAddGv~~qT~----e~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        366 LVVAADDGVMPQTI----EAINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             EEEECCCCCCHhHH----HHHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            99999874221111    12222222579999999999985421   222211       122333  689999999999


Q ss_pred             CHHHHHHHHHH
Q 030524          158 NIKLCCHTLNS  168 (175)
Q Consensus       158 ~v~~~f~~l~~  168 (175)
                      |+.++|++|..
T Consensus       439 GI~eLle~I~~  449 (787)
T PRK05306        439 GIDELLEAILL  449 (787)
T ss_pred             CchHHHHhhhh
Confidence            99999999864

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=4e-22  Score=152.62  Aligned_cols=161  Identities=18%  Similarity=0.099  Sum_probs=107.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc----cc---cccccccC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RS---LIPSYIRD   81 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~---~~~~~~~~   81 (175)
                      -..|+|+|.||||||||+++|..........+..+.....-.+...+  ..+.+||+||..+.    ..   ..-..+.+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            36799999999999999999998654322222222333333333444  47999999995321    11   11223678


Q ss_pred             CcEEEEEEECCCh----hhHHhHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC
Q 030524           82 SSVAVVVYDVASR----QSFLNTSKWIDEVRTER-----------GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV  146 (175)
Q Consensus        82 ~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~-----------~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~  146 (175)
                      +|++|+|+|+++.    +.++.+..+..++..+.           ..+.|.++|+||+|+.+.... .+.........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            9999999999852    34545555544554432           146899999999998643321 2223333445678


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          147 MFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       147 ~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +++++|+++++|+++++.+|.+.+..
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999887643

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.89  E-value=5.5e-22  Score=137.80  Aligned_cols=117  Identities=20%  Similarity=0.361  Sum_probs=90.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCC-cEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVVVY   89 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~   89 (175)
                      +|+++|++|||||+|+++|..+.+...+.++. ...........+....+.+||+||+.+++..+..+++++ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            68999999999999999999887665544432 222222222223456799999999999999998999999 9999999


Q ss_pred             ECCCh-hhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC
Q 030524           90 DVASR-QSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        90 d~~~~-~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~  128 (175)
                      |+++. .++.....|+..+....   ..++|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 67888777776664432   26899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.89  E-value=2.5e-22  Score=137.11  Aligned_cols=151  Identities=19%  Similarity=0.233  Sum_probs=98.1

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFR   72 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~   72 (175)
                      +++.....+|+++|++|+|||||++++++........++.+.+........++   .+.+||+||..          .+.
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence            45566789999999999999999999998753333333333233222233332   58999999953          233


Q ss_pred             cccccccc---CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHHhcC--
Q 030524           73 SLIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN--  145 (175)
Q Consensus        73 ~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~~~~~~~~~~~~~--  145 (175)
                      .+...+++   .+|++++|+|++++.+..... .+..+. .  .++|+++++||+|+..+.  .....+.+......+  
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~-~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~  164 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLR-E--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD  164 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHH-H--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence            33344554   358999999998764444432 222222 2  468999999999985432  122344445555544  


Q ss_pred             CeEEEeccCCCCCHH
Q 030524          146 VMFIETSAKAGFNIK  160 (175)
Q Consensus       146 ~~~~~~s~~~~~~v~  160 (175)
                      ++++++||++|+|++
T Consensus       165 ~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       165 PSVQLFSSLKKTGID  179 (179)
T ss_pred             CceEEEECCCCCCCC
Confidence            489999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=8.9e-22  Score=148.05  Aligned_cols=160  Identities=19%  Similarity=0.159  Sum_probs=110.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS   83 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   83 (175)
                      .|+|+|.||||||||+|+|++........+..+.....-.+...+ ...+.++|+||..+-.       ......+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            799999999999999999998654322222222232222333332 2358999999964311       11223478899


Q ss_pred             EEEEEEECC---ChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEeccCCC
Q 030524           84 VAVVVYDVA---SRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG  156 (175)
Q Consensus        84 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  156 (175)
                      ++++|+|++   +.+.++....|++++..+..  .+.|+++|+||+|+...... ......+....+  .+++.+||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999998   45667777777777776532  46899999999998643322 233444444444  47899999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 030524          157 FNIKLCCHTLNSLITV  172 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~~  172 (175)
                      .|++++++.|.+.+..
T Consensus       319 ~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        319 LGVKELCWDLMTFIEE  334 (390)
T ss_pred             cCHHHHHHHHHHHhhh
Confidence            9999999999887753

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=5.2e-22  Score=145.28  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=103.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSYI   79 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~   79 (175)
                      +.-.|+++|+||||||||+|+|++...........+.......+... ....+.+|||||.....        ......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            45679999999999999999999876542211111111111122222 22679999999964322        2233457


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCC
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN  158 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  158 (175)
                      .++|++++|+|++++.  .....++.....  ..+.|+++++||+|+.............+....+ .+++++||+++.|
T Consensus        83 ~~~D~il~vvd~~~~~--~~~~~~i~~~l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKI--GPGDEFILEKLK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCC--ChhHHHHHHHHh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            8999999999998732  222222222222  2368999999999986433333334444444444 5899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      +.++++++.+.+.
T Consensus       159 v~~L~~~L~~~l~  171 (292)
T PRK00089        159 VDELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999988764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.89  E-value=7.6e-22  Score=155.63  Aligned_cols=160  Identities=18%  Similarity=0.197  Sum_probs=114.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC--CCC-----cc------cccceeeEEEEEEEE-----CCeEEEEEEEeCCCc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----TY------QATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQ   68 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~   68 (175)
                      .+-.+|+++|+.++|||||+++|+...  ...     .+      ....+++.....+..     ++..+.+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            345689999999999999999998632  110     00      112333333222222     556789999999999


Q ss_pred             ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe-
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-  147 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~-  147 (175)
                      .+|...+..++..+|++|+|+|++++...+....|....    ..++|+++++||+|+.+..  ......++...+++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence            999999999999999999999999876655555554322    2478999999999985432  122233444445553 


Q ss_pred             --EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          148 --FIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       148 --~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                        ++++||++|.|+.+++++|.+.+.+
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence              8999999999999999999887643

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.89  E-value=7e-22  Score=155.72  Aligned_cols=145  Identities=16%  Similarity=0.204  Sum_probs=108.7

Q ss_pred             CCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCCcEEEE
Q 030524           16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVV   87 (175)
Q Consensus        16 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   87 (175)
                      |++|+|||||+|++.+........+..+.+.....+..++.  ++.+||+||+.++...      .+.++  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999988765555566666666666666553  5899999998776543      33333  37899999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |+|.++.+..   ..+..++.   ..++|+++++||+|+.+.+... .+.+.+.+..+++++++||++|+|++++|+++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875321   22222222   2579999999999986554444 346778888999999999999999999999987


Q ss_pred             HH
Q 030524          168 SL  169 (175)
Q Consensus       168 ~~  169 (175)
                      +.
T Consensus       152 ~~  153 (591)
T TIGR00437       152 KA  153 (591)
T ss_pred             HH
Confidence            65

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.8e-21  Score=149.61  Aligned_cols=146  Identities=19%  Similarity=0.154  Sum_probs=103.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR   80 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   80 (175)
                      .+|+++|.+|||||||+|+|++.... ....+..+.+........++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            57999999999999999999987642 22233344455555555665  6799999999876        2233455678


Q ss_pred             CCcEEEEEEECCChhhHH--hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCC
Q 030524           81 DSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (175)
                      ++|++++|+|+.++.+..  .+..|+.    .  .+.|+++++||+|..+.    .....+ ...+++ .++++||.+|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~----~--~~~piilv~NK~D~~~~----~~~~~~-~~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR----K--SNKPVILVVNKVDGPDE----EADAYE-FYSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH----H--cCCcEEEEEECccCccc----hhhHHH-HHhcCCCCCEEEEeeCCC
Confidence            999999999998753332  2333333    2  26899999999996431    112222 245566 48999999999


Q ss_pred             CHHHHHHHHHH
Q 030524          158 NIKLCCHTLNS  168 (175)
Q Consensus       158 ~v~~~f~~l~~  168 (175)
                      |+.++|+.+.+
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999876

>cd00880 Era_like Era (E

Probab=99.88  E-value=1.5e-21  Score=130.08  Aligned_cols=151  Identities=19%  Similarity=0.148  Sum_probs=103.8

Q ss_pred             EECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-------ccccccCCcEE
Q 030524           14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSSVA   85 (175)
Q Consensus        14 l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~   85 (175)
                      ++|++|+|||||++++.+.... .......+............ ...+.+||+||...+...       +..++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986544 22233333233333332221 457999999997665433       33477899999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      ++++|..++....... +.....   ..+.|+++++||+|+.........   .........+++++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999886665544 222222   257999999999998654433222   122333444679999999999999999


Q ss_pred             HHHHHHH
Q 030524          163 CHTLNSL  169 (175)
Q Consensus       163 f~~l~~~  169 (175)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.88  E-value=2.5e-22  Score=138.10  Aligned_cols=159  Identities=25%  Similarity=0.272  Sum_probs=106.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCc------------------ccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (175)
                      +.++|+++|+.++|||||+++|+.......                  .....+.+..............+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            458999999999999999999986432110                  01111222222222212444679999999999


Q ss_pred             cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHH-HHHHhc---
Q 030524           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGE-AKSREL---  144 (175)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~-~~~~~~---  144 (175)
                      +|...+...+..+|++|+|+|+.++...+ ....+..+..   .++|+++++||+|+...+.. ...+.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            99988888899999999999998663322 2333333332   46889999999998621110 011111 333333   


Q ss_pred             ---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          145 ---NVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       145 ---~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                         .++++++|+.+|.|+.++++.+.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               25899999999999999999998865

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.87  E-value=7.4e-21  Score=153.24  Aligned_cols=154  Identities=17%  Similarity=0.189  Sum_probs=111.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IPS   77 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~   77 (175)
                      +.++|+++|+||+|||||+|++.+........+..++  ..+.........++.+||+||..++...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv--e~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV--ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE--eeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            3578999999999999999999987554333333333  3333334445567999999998765432          222


Q ss_pred             cc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524           78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (175)
Q Consensus        78 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (175)
                      ++  ..+|++++|+|+++.++-..   +..++..   .++|+++++||+|+.+.+.. ..+.+++.+.++++++++|++.
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l~---l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNLY---LTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhHH---HHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence            32  47899999999998654322   3333332   46999999999998654444 3456778888999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 030524          156 GFNIKLCCHTLNSLI  170 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~  170 (175)
                      |+|++++.+.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999887653

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.87  E-value=1.4e-21  Score=149.63  Aligned_cols=158  Identities=17%  Similarity=0.184  Sum_probs=102.6

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCC--Cc---------------------------ccccceeeEEEEEEEECC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD--NT---------------------------YQATIGIDFLSKTMYLED   55 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~   55 (175)
                      +....++|+++|++++|||||+++|+...-.  ..                           .....+.+.......++.
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~   81 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET   81 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence            4566799999999999999999999853211  00                           000222333333334444


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC----
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----  131 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~----  131 (175)
                      ..+.+.+|||||+++|...+...+.++|++++|+|++++.++.....+...+....+ ..|+++++||+|+.+...    
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHHH
Confidence            557899999999988877666667899999999999873233232222222222222 246899999999864221    


Q ss_pred             CCHHHHHHHHHhcC-----CeEEEeccCCCCCHHHHH
Q 030524          132 VSIEEGEAKSRELN-----VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       132 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~f  163 (175)
                      ....+...++...+     ++++++||++|+|+.+.+
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            11234455555554     579999999999998744

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.87  E-value=6.5e-24  Score=139.74  Aligned_cols=166  Identities=36%  Similarity=0.551  Sum_probs=145.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe-EEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .-+++.++|..|+|||+++.+++.+.+...|..++++++..+....+.. .+++.+||..|+++|..+..-|++.+++.+
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            4589999999999999999999999999999999999988887766554 467899999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHhcCC-eEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  160 (175)
                      +|||+++..+|+.+.+|.+.+....    +.++|+++.+||||....... ......++.+++|. .++++|++.+.++.
T Consensus       104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~  183 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP  183 (229)
T ss_pred             EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence            9999999999999999999986653    256889999999997543222 25677888999997 89999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      |.-..+++.++.+
T Consensus       184 Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  184 EAQRELVEKILVN  196 (229)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=1.1e-20  Score=145.15  Aligned_cols=148  Identities=22%  Similarity=0.231  Sum_probs=105.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc--------ccccccccccccC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD   81 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~   81 (175)
                      +|+++|.+|||||||+|+|++.... ....+..+.+........++  ..+.+|||||.        +.+......++++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987632 22233344444455555555  35999999996        3344456667889


Q ss_pred             CcEEEEEEECCChhhHHh--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCC
Q 030524           82 SSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (175)
                      +|++++|+|..++.+...  +..|+.    .  .+.|+++|+||+|+......    . .....+++ +++++||..|.|
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~----~--~~~piilVvNK~D~~~~~~~----~-~~~~~lg~~~~~~vSa~~g~g  147 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLR----K--SGKPVILVANKIDGKKEDAV----A-AEFYSLGFGEPIPISAEHGRG  147 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHH----H--hCCCEEEEEECccCCccccc----H-HHHHhcCCCCeEEEeCCcCCC
Confidence            999999999987533322  233322    2  36899999999997543321    1 22345676 799999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      +.++++++.+.+.
T Consensus       148 v~~ll~~i~~~l~  160 (429)
T TIGR03594       148 IGDLLDAILELLP  160 (429)
T ss_pred             hHHHHHHHHHhcC
Confidence            9999999887763

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.86  E-value=2.4e-21  Score=122.32  Aligned_cols=160  Identities=21%  Similarity=0.276  Sum_probs=123.8

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ..+.++|+++|-.++||||++..|.+-. .....++.++.......  + ..+.+.+||.+|+...+..|..|+.+.|++
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn~k~v~~--~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFNTKKVEY--D-GTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcceEEEee--c-CcEEEEEEecCCccccchhhhhhhhccceE
Confidence            3578999999999999999999987654 34456667665544443  2 346899999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNI  159 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v  159 (175)
                      |||+|.+|+..|+++...+-++....+ ..+|+.+.+||.|+..+..+.  +....+     +..-+.+-+||+..++|+
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e--eia~klnl~~lrdRswhIq~csals~eg~  167 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE--EIALKLNLAGLRDRSWHIQECSALSLEGS  167 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH--HHHHhcchhhhhhceEEeeeCccccccCc
Confidence            999999999999999888888877665 789999999999975433222  111111     122346789999999999


Q ss_pred             HHHHHHHHHHHh
Q 030524          160 KLCCHTLNSLIT  171 (175)
Q Consensus       160 ~~~f~~l~~~~~  171 (175)
                      ..-.+|+.+...
T Consensus       168 ~dg~~wv~sn~~  179 (185)
T KOG0074|consen  168 TDGSDWVQSNPE  179 (185)
T ss_pred             cCcchhhhcCCC
Confidence            888888766543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.86  E-value=6.2e-21  Score=146.07  Aligned_cols=157  Identities=17%  Similarity=0.192  Sum_probs=103.5

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcC--CCCCc---------------------------ccccceeeEEEEEEEECCe
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT---------------------------YQATIGIDFLSKTMYLEDR   56 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   56 (175)
                      ....++|+++|+.++|||||+++|+..  .....                           .....+.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            456699999999999999999999862  11100                           0011222333333334444


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC----
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----  131 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~----  131 (175)
                      .+.+.+||+||+++|...+...+.++|++++|+|++++++....+ .+...+.... ...|+++++||+|+.+..+    
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence            578999999999988777777788999999999999875332111 1111122222 2357889999999864222    


Q ss_pred             CCHHHHHHHHHhcC-----CeEEEeccCCCCCHHHHH
Q 030524          132 VSIEEGEAKSRELN-----VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       132 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~f  163 (175)
                      ....+...+++..+     ++++++||++|+|+.+.+
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            11345556666655     579999999999998643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1159 Era GTPase [General function prediction only]

Probab=99.86  E-value=1.2e-20  Score=133.73  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=107.2

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPS   77 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~   77 (175)
                      ..++--|+++|.||+|||||+|++++.+..-......+.......+...+ ..++.+.||||-.+-..        ....
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            44567899999999999999999999886633333332222233332332 45799999999432222        2234


Q ss_pred             cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCC
Q 030524           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAG  156 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~  156 (175)
                      -+..+|+++||+|++++..  .-.+++.+....  .+.|+++++||.|.................... ..++++||+.|
T Consensus        82 sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          82 ALKDVDLILFVVDADEGWG--PGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             HhccCcEEEEEEeccccCC--ccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            4688999999999987432  222232222222  368999999999986554422233333333333 38999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 030524          157 FNIKLCCHTLNSLITV  172 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~~  172 (175)
                      .|+..+.+.+.+++-+
T Consensus       158 ~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         158 DNVDTLLEIIKEYLPE  173 (298)
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999998877643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=2.9e-20  Score=142.93  Aligned_cols=156  Identities=21%  Similarity=0.202  Sum_probs=104.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I   75 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   75 (175)
                      ..++|+++|.+|+|||||+|++++... .....+..+.+.....+..++  ..+.+|||||..+....           .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            469999999999999999999998653 233334444444444444444  45789999996432221           1


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHH----hcCCeEEE
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-AKSR----ELNVMFIE  150 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~-~~~~----~~~~~~~~  150 (175)
                      ..++..+|++|+|+|++++.+.+... ++..+..   .+.|+++++||+|+.++..  ..+.. ....    ...+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            23578999999999999886655543 2222222   4689999999999863221  11111 1111    12469999


Q ss_pred             eccCCCCCHHHHHHHHHHHHh
Q 030524          151 TSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +||++|.|+.++|+.+.+...
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999876543

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=2.6e-20  Score=146.10  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=102.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccc----cceeeEEEEEEE------------ECCeEEEEEEEeCCCcccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY------------LEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~D~~G~~~~   71 (175)
                      ++.-|+++|++++|||||+++|.+..+......    +.+..+......            ++.....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            456799999999999999999998765433222    112222111110            0011123889999999999


Q ss_pred             cccccccccCCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC------------CHHH
Q 030524           72 RSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------------SIEE  136 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~------------~~~~  136 (175)
                      ..++..++..+|++++|+|+++   +.+++.+..    +. .  .++|+++++||+|+.+....            ....
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~-~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR-M--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH-H--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            9999999999999999999987   444433321    11 1  46899999999998632100            0000


Q ss_pred             ------------HHHHHH------------hc--CCeEEEeccCCCCCHHHHHHHHHHH
Q 030524          137 ------------GEAKSR------------EL--NVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       137 ------------~~~~~~------------~~--~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                                  ..+++.            .+  .++++++||++|+|+.++..++...
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                        001111            11  3589999999999999999987653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.85  E-value=8.2e-20  Score=129.28  Aligned_cols=151  Identities=19%  Similarity=0.237  Sum_probs=101.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS   83 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   83 (175)
                      +|+++|++|+|||||+++|.+........+..+.+.....+..++  ..+++||+||..+..       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998754322222222333333444444  578999999974332       12335688999


Q ss_pred             EEEEEEECCChh-hHHhHHHHHHHH----------------------------------------HHhc-----------
Q 030524           84 VAVVVYDVASRQ-SFLNTSKWIDEV----------------------------------------RTER-----------  111 (175)
Q Consensus        84 ~~i~v~d~~~~~-~~~~~~~~~~~~----------------------------------------~~~~-----------  111 (175)
                      ++++|+|+++++ ..+.+...++..                                        ....           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 333333333211                                        1110           


Q ss_pred             ------------C--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          112 ------------G--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       112 ------------~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                                  +  .-+|+++++||+|+..     ..+...++..  .+++++||++|.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                        0  1368999999999753     3344445543  4689999999999999999987754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=3.3e-20  Score=149.62  Aligned_cols=157  Identities=20%  Similarity=0.249  Sum_probs=108.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I   75 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~   75 (175)
                      ..++|+++|.+|+|||||+|++++.... ....+..+.+.....+..++..  +.+|||||..+          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999987642 2233444455555556666654  67999999532          1111 1


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-h----cCCeEEE
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-E----LNVMFIE  150 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  150 (175)
                      ...+..+|++++|+|++++.+.+.... +..+..   .++|+++|+||+|+.+...  ....+.... .    ..++++.
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            234688999999999998877776543 333322   4799999999999864321  112222111 1    1247799


Q ss_pred             eccCCCCCHHHHHHHHHHHHhh
Q 030524          151 TSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +||++|.|+.++|+.+.+....
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998887654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.85  E-value=2.1e-20  Score=147.17  Aligned_cols=159  Identities=16%  Similarity=0.236  Sum_probs=113.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC--CCCCc------------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD--KFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   75 (175)
                      .+|+++|+.++|||||+++|+..  .+...            .....+++.......+....+++.+|||||+.+|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            47999999999999999999863  21111            11223455555555454455789999999999999999


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHH-------HhcCCe
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKS-------RELNVM  147 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~-------~~~~~~  147 (175)
                      ..++..+|++++|+|+.+.. ....+.|+.....   .++|+++++||+|+.+.+.. ..++...+.       ....++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            99999999999999998642 3344555555543   46899999999998543221 122333333       223578


Q ss_pred             EEEeccCCCC----------CHHHHHHHHHHHHhh
Q 030524          148 FIETSAKAGF----------NIKLCCHTLNSLITV  172 (175)
Q Consensus       148 ~~~~s~~~~~----------~v~~~f~~l~~~~~~  172 (175)
                      ++++|+++|.          |+..+|+.+.+.+.+
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            9999999995          799999998887643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=1.7e-19  Score=119.08  Aligned_cols=159  Identities=25%  Similarity=0.316  Sum_probs=116.6

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCc--------cc----ccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------YQ----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (175)
                      ........||++.|+.++||||++.++........        +.    .|..+++.....   .....+++++||||++
T Consensus         4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~R   80 (187)
T COG2229           4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQER   80 (187)
T ss_pred             ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHH
Confidence            34566789999999999999999999988764111        11    122222222221   2234789999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeE
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMF  148 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~--~~~~  148 (175)
                      |.-+|..+.+++.++|+++|.+.+..+ .....+. +.... ..+|++++.||.|+..  ....+..++..+..  .++.
T Consensus        81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~-f~~~~-~~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~v  155 (187)
T COG2229          81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIID-FLTSR-NPIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPV  155 (187)
T ss_pred             HHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHH-HHhhc-cCCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCce
Confidence            999999999999999999999998887 2233222 33232 2399999999999954  34455555555544  7899


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 030524          149 IETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       149 ~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      ++.++..+++..+..+.+...
T Consensus       156 i~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         156 IEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeeecccchhHHHHHHHHHhh
Confidence            999999999999999887765

>PRK10218 GTP-binding protein; Provisional

Probab=99.85  E-value=9.7e-20  Score=143.37  Aligned_cols=159  Identities=16%  Similarity=0.208  Sum_probs=114.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC--CCCCc------------ccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (175)
                      -.+|+++|+.++|||||+++|+..  .+...            ...+.++++......+....+++.+|||||+.+|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            468999999999999999999972  22211            1234556666666666666789999999999999999


Q ss_pred             ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------hcCC
Q 030524           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNV  146 (175)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~-------~~~~  146 (175)
                      +..+++.+|++|+|+|+++....+ .+.++.....   .++|.++++||+|+...+.. ..++...+..       ...+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            999999999999999998753322 2333333322   46889999999998643221 1222333321       2346


Q ss_pred             eEEEeccCCCC----------CHHHHHHHHHHHHh
Q 030524          147 MFIETSAKAGF----------NIKLCCHTLNSLIT  171 (175)
Q Consensus       147 ~~~~~s~~~~~----------~v~~~f~~l~~~~~  171 (175)
                      +++.+|+.+|.          ++..+|+.+.+.+-
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            89999999998          58899988887654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=1.5e-19  Score=145.90  Aligned_cols=152  Identities=18%  Similarity=0.132  Sum_probs=102.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY   78 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   78 (175)
                      ...+|+++|.+|+|||||+|+|++.... ....+..+.+........++  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3478999999999999999999986532 22233333344443434444  4689999999653        22344556


Q ss_pred             ccCCcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAG  156 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  156 (175)
                      +..+|++|+|+|+++..  .... .|...+..   .++|+++|+||+|+....    .....+ ...+. ..+++||++|
T Consensus       352 ~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g  421 (712)
T PRK09518        352 VSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHG  421 (712)
T ss_pred             HHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCC
Confidence            78999999999998642  2222 33333332   479999999999975321    112222 12333 4579999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 030524          157 FNIKLCCHTLNSLIT  171 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~  171 (175)
                      .|+.++|+++.+.+.
T Consensus       422 ~GI~eLl~~i~~~l~  436 (712)
T PRK09518        422 RGVGDLLDEALDSLK  436 (712)
T ss_pred             CCchHHHHHHHHhcc
Confidence            999999999988764

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.84  E-value=2.7e-20  Score=141.53  Aligned_cols=163  Identities=20%  Similarity=0.158  Sum_probs=106.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCC---CcccccceeeEE--E----------------EEEEECC------eEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFL--S----------------KTMYLED------RTVR   59 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~--~----------------~~~~~~~------~~~~   59 (175)
                      ...++|+++|++++|||||+++|.+....   ++.....+....  .                ....+++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45689999999999999999999753221   111111111110  0                0101111      1357


Q ss_pred             EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 030524           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG  137 (175)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~  137 (175)
                      +.+||+||+++|...+......+|++++|+|++++.........+..+. .. ...|+++++||+|+.+....  ...+.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-II-GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-Hc-CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            9999999999998888888889999999999986531222333333332 22 23468899999998643221  12333


Q ss_pred             HHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          138 EAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       138 ~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      ..+....   +++++++|+++|+|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4444433   578999999999999999999987643

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.84  E-value=3.5e-20  Score=129.30  Aligned_cols=146  Identities=21%  Similarity=0.250  Sum_probs=92.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCc-------------------------------ccccceeeEEEEEEEECCeEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNT-------------------------------YQATIGIDFLSKTMYLEDRTVR   59 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   59 (175)
                      +|+++|++|+|||||+++|+...-...                               ..+..+.+.....  +......
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--FSTPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE--EecCCce
Confidence            689999999999999999976321100                               0111222222222  2223457


Q ss_pred             EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC----CHH
Q 030524           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----SIE  135 (175)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~----~~~  135 (175)
                      +.+|||||+++|...+...+..+|++++|+|++++..-+ ..... .+.... ...++++++||+|+.+....    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            899999999888776777789999999999998753211 12211 122222 12357778999998642211    123


Q ss_pred             HHHHHHHhcCC---eEEEeccCCCCCHHH
Q 030524          136 EGEAKSRELNV---MFIETSAKAGFNIKL  161 (175)
Q Consensus       136 ~~~~~~~~~~~---~~~~~s~~~~~~v~~  161 (175)
                      +...++..++.   +++++||++|.|+.+
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            34455555663   589999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.83  E-value=1.2e-19  Score=143.47  Aligned_cols=156  Identities=18%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      -|+++|+.++|||||+++|.+..   ...+.....+++.........+ ...+.+||+||+++|...+...+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58899999999999999998642   2233333344333323332222 2358999999999998877778899999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHhcC---CeEEEeccCCCCCHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSRELN---VMFIETSAKAGFNIKL  161 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~s~~~~~~v~~  161 (175)
                      |+|++++.. ......+. +...  .++| +++++||+|+.++...  ...+...+....+   ++++++|+++|+|+++
T Consensus        81 VVda~eg~~-~qT~ehl~-il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVM-AQTREHLA-ILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCc-HHHHHHHH-HHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            999986421 12222222 2222  2455 5789999998643221  1233444444444   6899999999999999


Q ss_pred             HHHHHHHHHh
Q 030524          162 CCHTLNSLIT  171 (175)
Q Consensus       162 ~f~~l~~~~~  171 (175)
                      +++.|.+...
T Consensus       157 L~~~L~~~~~  166 (614)
T PRK10512        157 LREHLLQLPE  166 (614)
T ss_pred             HHHHHHHhhc
Confidence            9999876543

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.83  E-value=2.6e-19  Score=140.89  Aligned_cols=155  Identities=22%  Similarity=0.248  Sum_probs=100.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc----cceeeEEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY--LEDRT-----V-----RLQLWDTAGQER   70 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~   70 (175)
                      .++..|+++|++++|||||+++|.+.........    +.+.++......  ..+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            4567899999999999999999987654322222    222121111110  00111     1     268999999999


Q ss_pred             ccccccccccCCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--C----------HH
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S----------IE  135 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~----------~~  135 (175)
                      |..++...+..+|++++|+|+++   +.+++.+..    +. .  .++|+++++||+|+......  .          ..
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~-~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK-R--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH-H--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99998888899999999999987   445444332    21 1  47899999999998521000  0          00


Q ss_pred             -----------HHHHHHHhc---------------CCeEEEeccCCCCCHHHHHHHHHH
Q 030524          136 -----------EGEAKSREL---------------NVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus       136 -----------~~~~~~~~~---------------~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                                 +........               .++++++|+.+|+|+.++...+..
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                       011111111               257999999999999999988764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.83  E-value=1.2e-19  Score=122.06  Aligned_cols=150  Identities=22%  Similarity=0.316  Sum_probs=97.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR   80 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   80 (175)
                      .|+++|++|+|||||++.++++.......++.+.+........++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996554444444444343333333333   789999999533          3333444443


Q ss_pred             ---CCcEEEEEEECCChhhH--HhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHH--hcCCeEEEe
Q 030524           81 ---DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR--ELNVMFIET  151 (175)
Q Consensus        81 ---~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  151 (175)
                         +.+.+++++|..+..+.  ..+..|+..      .+.|+++++||+|+......  ..........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               45788999998765321  123333322      25899999999998532211  1122222222  234589999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 030524          152 SAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++.++.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=5.1e-21  Score=121.15  Aligned_cols=159  Identities=21%  Similarity=0.307  Sum_probs=121.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +..+|+++|-.|+||++++-++-.+... ...|+.++....    +..+..++.+||..|+...+..|+.|+.+.|++||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            6789999999999999998887655433 235555544332    23366889999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHH-----HHHHHhcCCeEEEeccCCCCCHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEG-----EAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      |+|.+|++.+......+-.+..... .+..+++++||.|....  ....++     .+..+..-+.+++.||..|+|+++
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999999988887666665555443 56778889999997532  222222     222333447899999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030524          162 CCHTLNSLITVC  173 (175)
Q Consensus       162 ~f~~l~~~~~~~  173 (175)
                      .++||.+.+.+.
T Consensus       170 ~~DWL~~~l~~~  181 (182)
T KOG0072|consen  170 AMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHhcc
Confidence            999999887653

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=2.6e-19  Score=133.87  Aligned_cols=153  Identities=22%  Similarity=0.265  Sum_probs=112.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (175)
                      ..++++++|.||+|||||+|.|+++... .+..+..+.|.....+.++|  +.+++.||+|-.+-...        ....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4589999999999999999999997654 55677777788888888888  66999999995433332        2344


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                      ++++|.+++|+|.+.+.+-+... .+.    ....+.|+++|.||.|+........     .....+.+++.+|+++|+|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccC
Confidence            78999999999999862222211 111    3346799999999999975443111     1122344789999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030524          159 IKLCCHTLNSLITV  172 (175)
Q Consensus       159 v~~~f~~l~~~~~~  172 (175)
                      ++.+.+.|.+.+..
T Consensus       364 l~~L~~~i~~~~~~  377 (454)
T COG0486         364 LDALREAIKQLFGK  377 (454)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998877653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.83  E-value=3.5e-19  Score=122.76  Aligned_cols=147  Identities=16%  Similarity=0.121  Sum_probs=96.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCC--------------cccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (175)
                      +++|+++|+.++|||||+++|++.....              ......+.+..............+.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            5899999999999999999998641000              00112233333333444444567899999999988877


Q ss_pred             ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHhcC-----
Q 030524           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN-----  145 (175)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~---~~~~~~~~~~~~~-----  145 (175)
                      ....+..+|++++|+|+..+..- .....+..+..   .++| +++++||+|+....+.   ...+...+....+     
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            77778899999999999764221 12233333322   3566 7788999998532211   1223444444443     


Q ss_pred             CeEEEeccCCCCCH
Q 030524          146 VMFIETSAKAGFNI  159 (175)
Q Consensus       146 ~~~~~~s~~~~~~v  159 (175)
                      ++++++|+++|.+.
T Consensus       158 v~iipiSa~~g~n~  171 (195)
T cd01884         158 TPIVRGSALKALEG  171 (195)
T ss_pred             CeEEEeeCccccCC
Confidence            68999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.83  E-value=2e-19  Score=136.76  Aligned_cols=165  Identities=19%  Similarity=0.140  Sum_probs=103.6

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCC---CcccccceeeEEE------------------EEEEEC--C----eE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS------------------KTMYLE--D----RT   57 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~------------------~~~~~~--~----~~   57 (175)
                      ....+++|+++|+.++|||||+++|.+....   .+.....+++...                  .....+  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            3456799999999999999999999653211   1111112211110                  000011  1    13


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHH
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIE  135 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~  135 (175)
                      ..+.+||+||+++|.........++|++++|+|++++.........+..+. .. ...|+++++||+|+.++...  ..+
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~-~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALD-II-GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHH-Hc-CCCcEEEEEEeeccccchhHHHHHH
Confidence            578999999999887766666677899999999986431111122222222 21 12468899999998653321  123


Q ss_pred             HHHHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          136 EGEAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       136 ~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +...++...   +++++++||++|+|+.++++.|.+.+.
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            344444332   478999999999999999999987653

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.82  E-value=1.7e-19  Score=127.87  Aligned_cols=113  Identities=18%  Similarity=0.226  Sum_probs=80.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC--------C-----cc---cccceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD--------N-----TY---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (175)
                      +|+++|++|+|||||+++++...-.        .     ++   ....+.+.......+.....++.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999863210        0     00   112223333333444444568999999999999988


Q ss_pred             ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      +..+++.+|++++|+|+++.... ....++..+..   .++|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            89999999999999999876433 23444444432   368999999999986

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=2e-19  Score=134.09  Aligned_cols=150  Identities=20%  Similarity=0.171  Sum_probs=107.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI   79 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   79 (175)
                      ..|+++|-||||||||.|+|+++... .+..+..+.|.........+..  |.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            67999999999999999999998754 4445555556666666566644  9999999965322         1334457


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCC
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (175)
                      ..+|++|||+|...+-+  .....+-.+...  .++|+++++||+|-.     ..++.......+|. ..+.+||..|.|
T Consensus        82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr~--~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          82 EEADVILFVVDGREGIT--PADEEIAKILRR--SKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             HhCCEEEEEEeCCCCCC--HHHHHHHHHHHh--cCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence            78999999999875422  222222233332  469999999999943     22334444555676 789999999999


Q ss_pred             HHHHHHHHHHHH
Q 030524          159 IKLCCHTLNSLI  170 (175)
Q Consensus       159 v~~~f~~l~~~~  170 (175)
                      +.++.+.+.+.+
T Consensus       153 i~dLld~v~~~l  164 (444)
T COG1160         153 IGDLLDAVLELL  164 (444)
T ss_pred             HHHHHHHHHhhc
Confidence            999999998875

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.82  E-value=1.9e-19  Score=126.12  Aligned_cols=161  Identities=17%  Similarity=0.213  Sum_probs=102.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccc-cceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----cccccccCCcE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDSSV   84 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~   84 (175)
                      ||+++|+.+|||||+.+.+.++..+.+... ..+.+.....+. ....+.+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999999988765433221 122233333332 23345799999999876554     35677899999


Q ss_pred             EEEEEECCChhhHHhHHH---HHHHHHHhcCCCCcEEEEEeCCCCCCCCCC------CHHHHHHHHHhcC---CeEEEec
Q 030524           85 AVVVYDVASRQSFLNTSK---WIDEVRTERGSDVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELN---VMFIETS  152 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~s  152 (175)
                      +|||+|+.+.+-.+.+..   .++.+... .++..+-+++.|+|+..+...      ...+..+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999985443333333   33333333 378999999999998542111      1222333444455   7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhhhh
Q 030524          153 AKAGFNIKLCCHTLNSLITVCI  174 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~~~~~  174 (175)
                      .++ +.+.+.|..+++.+.++.
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTH
T ss_pred             CcC-cHHHHHHHHHHHHHcccH
Confidence            988 589999999999988764

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=3.8e-19  Score=114.88  Aligned_cols=135  Identities=21%  Similarity=0.294  Sum_probs=97.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc----ccccccccccccCCcEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i   86 (175)
                      ||+++|+.|+|||||+++|.+...  .+..|..+.+            .=.++||||.    ..+....-....++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999988543  4444544321            1245899993    333333334456899999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~  165 (175)
                      ++.|++++.+.-.     ..+...  -+.|+|=|+||+|+.. ...+.+.++++.+.-|+ .+|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998643211     111122  2589999999999863 34467788888888898 7899999999999999998


Q ss_pred             HH
Q 030524          166 LN  167 (175)
Q Consensus       166 l~  167 (175)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=3.3e-19  Score=124.91  Aligned_cols=113  Identities=26%  Similarity=0.310  Sum_probs=79.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcc-----------------cccceeeEEEEEEEE-----CCeEEEEEEEeCCCc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-----------------QATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQ   68 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~   68 (175)
                      +|+++|+.|+|||||+++|+........                 ....+.+........     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999874322110                 011222222222211     355788999999999


Q ss_pred             ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      .+|...+..++..+|++++|+|+++..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888888999999999999987765533 333333322   358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=7.2e-20  Score=118.60  Aligned_cols=156  Identities=20%  Similarity=0.252  Sum_probs=119.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.=|++++|-.|+|||||+++|...+. ..+.||.  +..+.+..+.|  .+++.+|.+||..-+..|+.|+..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccc-cccCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            346899999999999999999887653 3334433  22223334555  569999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh--------------cC---CeEE
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--------------LN---VMFI  149 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~--------------~~---~~~~  149 (175)
                      .+|+.|.+.|.+.+..++.+..... .++|+++.+||+|.+.+.  ..++.+....-              .+   +..+
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            9999999999999999998887764 789999999999986543  33333322111              11   2478


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 030524          150 ETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      .||...+.+..+.|.|+.+.+
T Consensus       172 mcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEccCccceeeeehhhhc
Confidence            889999999999999887764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=3.3e-18  Score=127.65  Aligned_cols=158  Identities=26%  Similarity=0.272  Sum_probs=110.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccc--c
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSL--I   75 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~--~   75 (175)
                      .+++|+++|-||+|||||+|++++.... ....+..+.+.....+..++.  .+.++||+|-.+         +.+.  .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            5699999999999999999999997543 344555555666666666664  589999999322         1111  1


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh----cC-CeEEE
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----LN-VMFIE  150 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~----~~-~~~~~  150 (175)
                      ...+..+|++++|+|++.+.+-+.  ..+-.+...  .+.+++++.||+|+.+......++.+.....    .+ ++.+.
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            233678999999999987644333  222222222  4789999999999877644444444333332    23 48999


Q ss_pred             eccCCCCCHHHHHHHHHHHHh
Q 030524          151 TSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +||.+|.++.++|+.+.+...
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHH
Confidence            999999999999999776543

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.81  E-value=7.4e-19  Score=124.68  Aligned_cols=163  Identities=18%  Similarity=0.173  Sum_probs=107.8

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc------------cc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FR   72 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~   72 (175)
                      ++.+.++|+++|.||+|||||.|.+++.+..+....+.+.+....-+... ...++.|+||||--.            +.
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhh
Confidence            45678999999999999999999999999887777777644444444334 345899999999211            11


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------------CCCC---HHH
Q 030524           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------------RQVS---IEE  136 (175)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-------------~~~~---~~~  136 (175)
                      ..-...+.++|++++++|+++....-. .+.+..+..+  ..+|.++++||.|....             .+..   ..-
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            122344678999999999996322111 1122223333  36999999999996532             1111   111


Q ss_pred             HHHHHHhc---------CC----eEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          137 GEAKSREL---------NV----MFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       137 ~~~~~~~~---------~~----~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      .+.+....         |+    .+|.+||..|+|++++-++|+..+.
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            11121111         22    3899999999999999999987654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.80  E-value=1.6e-18  Score=131.45  Aligned_cols=161  Identities=17%  Similarity=0.148  Sum_probs=105.8

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCC--------------cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      ...+++|+++|+.++|||||+++|++.....              ......+.+..............+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            3467999999999999999999998631100              01112333344444445444567899999999988


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHhcC--
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN--  145 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~~---~~~~~~~~~~~~--  145 (175)
                      ......-+..+|++++|+|+.++..- ....++..+..   .++| +++++||+|+.+..+..   ..+...+....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            87776667889999999999864221 12233332222   3577 67889999986432211   224445554454  


Q ss_pred             ---CeEEEeccCCCC--------CHHHHHHHHHHHH
Q 030524          146 ---VMFIETSAKAGF--------NIKLCCHTLNSLI  170 (175)
Q Consensus       146 ---~~~~~~s~~~~~--------~v~~~f~~l~~~~  170 (175)
                         ++++++|+++|.        ++.++++.+.+.+
T Consensus       165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence               589999999983        5777777776654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.80  E-value=4.3e-19  Score=124.76  Aligned_cols=148  Identities=21%  Similarity=0.228  Sum_probs=91.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cccccceeeEEEEEEEECCeEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKF--DN---------------------------TYQATIGIDFLSKTMYLEDRTVRLQ   61 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   61 (175)
                      +|+++|+.++|||||+++|+...-  ..                           ......+.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999864210  00                           0000112222222223333446799


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEECCChhh---HH---hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCC
Q 030524           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVS  133 (175)
Q Consensus        62 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~  133 (175)
                      +||+||+.+|...+...+..+|++|+|+|++++..   +.   .....+... ... ...|+++++||+|+....  ...
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccHHH
Confidence            99999998887777777788999999999987421   11   122222222 222 236888899999986321  111


Q ss_pred             ----HHHHHHHHHhc-----CCeEEEeccCCCCCHH
Q 030524          134 ----IEEGEAKSREL-----NVMFIETSAKAGFNIK  160 (175)
Q Consensus       134 ----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~  160 (175)
                          ..+........     +++++++||++|+|+.
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                11222233343     3679999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.7e-18  Score=134.49  Aligned_cols=157  Identities=17%  Similarity=0.166  Sum_probs=117.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc------cccccccccccc-
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ------ERFRSLIPSYIR-   80 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~~~~~~~~~-   80 (175)
                      +..+|+++|+||+|||||.|+|++.+......+..+++...-.....++.  +++.|.||-      ..-+...+.|+. 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            34679999999999999999999988777777777777776666666644  899999992      111223444443 


Q ss_pred             -CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        81 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                       +.|++|-|.|++|-++--.+.-.+.+      -+.|+++++|++|..+. .-..-+.+++.+.+|+|+++++|+.|+|+
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~-~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKK-RGIRIDIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHh-cCCcccHHHHHHHhCCCEEEEEeecCCCH
Confidence             56999999999987643333222222      47899999999997543 33445667788999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 030524          160 KLCCHTLNSLITVC  173 (175)
Q Consensus       160 ~~~f~~l~~~~~~~  173 (175)
                      +++...+.+....+
T Consensus       153 ~~l~~~i~~~~~~~  166 (653)
T COG0370         153 EELKRAIIELAESK  166 (653)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999887655443

>PRK12735 elongation factor Tu; Reviewed

Probab=99.80  E-value=1.9e-18  Score=131.07  Aligned_cols=161  Identities=17%  Similarity=0.130  Sum_probs=104.8

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCC--------------CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      ....++|+++|++++|||||+++|++....              .......+.+..............+.++||||+.+|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            356799999999999999999999862100              001112333333333444444457899999999988


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHhcC--
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSRELN--  145 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nk~D~~~~~~~---~~~~~~~~~~~~~--  145 (175)
                      ...+...+.++|++++|+|+.+...- ...+++..+.   ..++|.+ +++||+|+.+..+.   ...+.+.+...++  
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            87777778899999999999864321 2223333322   2457855 57899998642211   1224555555543  


Q ss_pred             ---CeEEEeccCCCC----------CHHHHHHHHHHHH
Q 030524          146 ---VMFIETSAKAGF----------NIKLCCHTLNSLI  170 (175)
Q Consensus       146 ---~~~~~~s~~~~~----------~v~~~f~~l~~~~  170 (175)
                         ++++++|+.+|.          ++.++++.|.+.+
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence               689999999984          5677777776543

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.79  E-value=4e-18  Score=129.38  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=96.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCC------C------C--cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------D------N--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~------~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      ....++|+++|+.++|||||+++|++...      .      .  ......+.+........+.....+.+|||||+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            45679999999999999999999974210      0      0  00111333333444445555567899999999988


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCCC---HHHHHHHHHhcC--
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSRELN--  145 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nk~D~~~~~~~~---~~~~~~~~~~~~--  145 (175)
                      ...+.....++|++++|+|+.++..-+ ..+.+..+..   .++|.+ +++||+|+.+..+..   ..+.+.++..++  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            876666677899999999998642221 2223333322   357755 679999986432211   234556666654  


Q ss_pred             ---CeEEEeccCCCC
Q 030524          146 ---VMFIETSAKAGF  157 (175)
Q Consensus       146 ---~~~~~~s~~~~~  157 (175)
                         ++++++|+.+|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence               689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01850 CDC_Septin CDC/Septin

Probab=99.78  E-value=8.2e-18  Score=121.72  Aligned_cols=142  Identities=13%  Similarity=0.177  Sum_probs=94.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCc----------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----   73 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   73 (175)
                      .++|+++|.+|+|||||+|+|++......          ..++.........+..++..+.+.+|||||..+...     
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999998765433          234444555566666678788999999999443211     


Q ss_pred             ---------------------ccccccc--CCcEEEEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-
Q 030524           74 ---------------------LIPSYIR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE-  128 (175)
Q Consensus        74 ---------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~-  128 (175)
                                           .....+.  .+|+++|+++.+.. .+... ...++.+.    ..+|+++|+||+|+.. 
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~  158 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence                                 1112233  46888888886642 12121 22222222    3689999999999854 


Q ss_pred             -CCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524          129 -KRQVSIEEGEAKSRELNVMFIETSAKA  155 (175)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (175)
                       +.........+.+..++++++......
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence             233345567777888899888776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.78  E-value=8.7e-18  Score=118.15  Aligned_cols=155  Identities=18%  Similarity=0.213  Sum_probs=96.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCccccc-----------------------ceeeEEEE-------------EEEEC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQAT-----------------------IGIDFLSK-------------TMYLE   54 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~-------------~~~~~   54 (175)
                      ||+++|+.++|||||++++..+.+.......                       .+++....             .-.+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999876543321110                       00110000             00112


Q ss_pred             CeEEEEEEEeCCCccccccccccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      .....+.+.|+||+++|.......+.  .+|++++|+|+..+.. .....++..+..   .++|+++++||+|+.++...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            22357899999999988765544443  6899999999876532 122333333322   46899999999998543221


Q ss_pred             C--HHHHHHHHH--------------------------hcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524          133 S--IEEGEAKSR--------------------------ELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       133 ~--~~~~~~~~~--------------------------~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      .  ..+...+..                          ...+|++.+|+.+|+|++++...|...
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l  221 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL  221 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence            1  112222222                          112489999999999999999887653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=2.1e-17  Score=125.25  Aligned_cols=157  Identities=19%  Similarity=0.240  Sum_probs=119.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      .++.-|.++|+...|||||++.+-+...........+.+...+.+..+- ..-.+.|+|||||+-|..+...-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3566789999999999999999988877666566666677777766642 223689999999999999999988999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC---------CeEEEeccCCC
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAG  156 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~  156 (175)
                      |+|+++.+.-    ..+..+.+......++|+++++||+|..   ..+.+.......++|         ..++++||++|
T Consensus        83 ILVVa~dDGv----~pQTiEAI~hak~a~vP~iVAiNKiDk~---~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg  155 (509)
T COG0532          83 ILVVAADDGV----MPQTIEAINHAKAAGVPIVVAINKIDKP---EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG  155 (509)
T ss_pred             EEEEEccCCc----chhHHHHHHHHHHCCCCEEEEEecccCC---CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence            9999998752    1222233333334689999999999976   344455555555554         36999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 030524          157 FNIKLCCHTLNSLI  170 (175)
Q Consensus       157 ~~v~~~f~~l~~~~  170 (175)
                      +|+.+|+..++-..
T Consensus       156 ~Gi~eLL~~ill~a  169 (509)
T COG0532         156 EGIDELLELILLLA  169 (509)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999876544

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.78  E-value=1.3e-18  Score=132.32  Aligned_cols=168  Identities=23%  Similarity=0.296  Sum_probs=122.8

Q ss_pred             CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 030524            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (175)
Q Consensus         1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (175)
                      |+.......+||+++|+.|+|||||+-.++...+.++..+--.  .......+.-..+..++.|++..++-+......++
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHh
Confidence            4555667889999999999999999999998876655333221  11111333334456899999866655555577789


Q ss_pred             CCcEEEEEEECCChhhHHhH-HHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHhcC-C-eEEEeccC
Q 030524           81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELN-V-MFIETSAK  154 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~~~~~-~-~~~~~s~~  154 (175)
                      ++|++.++|+.+++++++.+ ..|+..++...+  .++|+|+|+||.|........ ..........+. + .-++|||+
T Consensus        79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~  158 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL  158 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence            99999999999999999996 558888877664  689999999999986543332 223444444443 2 45889999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 030524          155 AGFNIKLCCHTLNSLI  170 (175)
Q Consensus       155 ~~~~v~~~f~~l~~~~  170 (175)
                      +-.++.++|.+..+.+
T Consensus       159 ~~~n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  159 TLANVSELFYYAQKAV  174 (625)
T ss_pred             hhhhhHhhhhhhhhee
Confidence            9999999999865544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=2.3e-17  Score=111.34  Aligned_cols=162  Identities=19%  Similarity=0.183  Sum_probs=107.4

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc----------ccccc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRS   73 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~   73 (175)
                      .+......|+++|-+|+|||||+|+|+++....-...+.|.+.......+++.   +.+.|.||.          +....
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            34556689999999999999999999997744444455555555555555553   789999993          33344


Q ss_pred             ccccccc---CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH--HHHH-HHHHhcCCe
Q 030524           74 LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGE-AKSRELNVM  147 (175)
Q Consensus        74 ~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~--~~~~-~~~~~~~~~  147 (175)
                      +...|+.   +-.++++++|+..+-  .......-++..+  .++|+++++||+|.....+...  .... .+.......
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~  171 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD  171 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc
Confidence            5556654   346888899987653  2322222333333  4799999999999765433321  1111 222223333


Q ss_pred             --EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          148 --FIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       148 --~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                        ++..|+..+.|++++...|.+.+..
T Consensus       172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         172 QWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ceEEEEecccccCHHHHHHHHHHHhhc
Confidence              7888999999999999998887654

>cd04169 RF3 RF3 subfamily

Probab=99.77  E-value=2.2e-17  Score=118.92  Aligned_cols=115  Identities=23%  Similarity=0.254  Sum_probs=80.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-----------------Ccccc---cceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-----------------NTYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (175)
                      .+|+++|++|+|||||+++++...-.                 .++.+   ..+.+.......++....++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            57999999999999999999853110                 00000   12333444444555566789999999999


Q ss_pred             cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      +|.......+..+|++|+|+|++++.... ...++....   ..++|+++++||+|+.+
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~---~~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCR---LRGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHH---hcCCCEEEEEECCccCC
Confidence            88887777889999999999998753221 223333222   24789999999999754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.76  E-value=1.1e-17  Score=117.24  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=77.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC--C--------------cccccceeeEEEEEEEEC--------CeEEEEEEEeCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA   66 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   66 (175)
                      +|+++|+.++|||||+++|+...-.  .              +.....++.........+        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            7999999999999999999864210  0              000111111111111222        446789999999


Q ss_pred             CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      |+.+|.......+..+|++++|+|+.++...+.. ..+....   ..++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCcc
Confidence            9999999999999999999999999987554432 2222222   2468999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>CHL00071 tufA elongation factor Tu

Probab=99.76  E-value=2.7e-17  Score=125.31  Aligned_cols=150  Identities=16%  Similarity=0.139  Sum_probs=97.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCC--------------CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      ....++|+++|++++|||||+++|++....              .......+.+..............+.+.||||+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            345699999999999999999999874110              001111333333333334334457889999999988


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHhcC--
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN--  145 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~---~~~~~~~~~~~~~--  145 (175)
                      ...+...+..+|++++|+|+..... ......+..+. .  .++| +++++||+|+.+..+.   ...+...+....+  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~-~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAK-Q--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHH-H--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            7777777889999999999876422 12223333222 2  3578 7788999998643221   1234455555443  


Q ss_pred             ---CeEEEeccCCCCCH
Q 030524          146 ---VMFIETSAKAGFNI  159 (175)
Q Consensus       146 ---~~~~~~s~~~~~~v  159 (175)
                         ++++++|+.+|.++
T Consensus       165 ~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        165 GDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCcceEEEcchhhcccc
Confidence               68999999998743

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.75  E-value=4.4e-17  Score=112.81  Aligned_cols=156  Identities=13%  Similarity=0.147  Sum_probs=91.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCccccccee---eEEEEEEEECCeEEEEEEEeCCCcccccccccc-----ccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-----YIR   80 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~   80 (175)
                      +++|+++|++|+|||||+|.+++.........+.+.   +.....+... ....+.+||+||..........     .+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999986543322222111   1011111111 1236899999996543222222     256


Q ss_pred             CCcEEEEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------CCHHHHHHHH----Hhc
Q 030524           81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-----------VSIEEGEAKS----REL  144 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~-----------~~~~~~~~~~----~~~  144 (175)
                      ++|+++++.+  +  ++... ..+++.+...   +.|+++|+||+|+....+           ...++.++.+    ...
T Consensus        80 ~~d~~l~v~~--~--~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISS--T--RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeC--C--CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            7899888754  2  23343 3344444432   589999999999843211           1111111111    122


Q ss_pred             C---CeEEEeccC--CCCCHHHHHHHHHHHHhh
Q 030524          145 N---VMFIETSAK--AGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       145 ~---~~~~~~s~~--~~~~v~~~f~~l~~~~~~  172 (175)
                      +   .+++.+|+.  .+.++..+.+.+...+..
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            2   378999998  578888888888776653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.75  E-value=9.7e-18  Score=128.57  Aligned_cols=152  Identities=17%  Similarity=0.199  Sum_probs=103.0

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cccccceeeEEEEEEEECCe
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN---------------------------TYQATIGIDFLSKTMYLEDR   56 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~   56 (175)
                      ...+++|+++|+.++|||||+.+|+...-  ..                           ......+++...........
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            34579999999999999999999875211  00                           00111233333334445555


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHH-------hHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFL-------NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~  128 (175)
                      ...+.++|+|||++|...+...+..+|++|+|+|+++. .|+       ..++.+...   ...++| +++++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~---~~~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA---FTLGVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH---HHcCCCcEEEEEEcccCCc
Confidence            67899999999999999999999999999999999863 232       223322222   124574 688899999752


Q ss_pred             CC------CCCHHHHHHHHHhcC-----CeEEEeccCCCCCHHH
Q 030524          129 KR------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKL  161 (175)
Q Consensus       129 ~~------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  161 (175)
                      ..      ....++.+.++...+     ++++++|+++|+|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11      112445666666665     5799999999999853

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.75  E-value=6.3e-17  Score=115.46  Aligned_cols=155  Identities=19%  Similarity=0.200  Sum_probs=107.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc-------cccccC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------PSYIRD   81 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~~~~   81 (175)
                      ..|.++|-||+|||||++.+..-+.. .+|..|+ .....-.+..++ ...+.+-|.||--+-.++.       -.-++.
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-L~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-LRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceee-eccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence            45789999999999999999886543 3444333 222222222222 2248999999943322221       223578


Q ss_pred             CcEEEEEEECCCh---hhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524           82 SSVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA  155 (175)
Q Consensus        82 ~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (175)
                      |+.++||+|++.+   ..++.++.+..++..+..  .+.|.++|+||+|+.+..   .....++++++.- .++++||++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence            9999999999988   777777777777766654  678999999999974221   1224566666654 489999999


Q ss_pred             CCCHHHHHHHHHHH
Q 030524          156 GFNIKLCCHTLNSL  169 (175)
Q Consensus       156 ~~~v~~~f~~l~~~  169 (175)
                      ++++.++.+.|.+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999887653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.75  E-value=1.3e-17  Score=128.74  Aligned_cols=154  Identities=20%  Similarity=0.221  Sum_probs=96.2

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcc-------------cc------------------cceeeEEEEEEEEC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------QA------------------TIGIDFLSKTMYLE   54 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~   54 (175)
                      ....++|+++|++++|||||+++|+...-....             ..                  ..+++.........
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            456799999999999999999999864211000             00                  11122222222333


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI  134 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~  134 (175)
                      .....+.++||||+++|...+...+..+|++++|+|+..+..-+ ....+ .+....+ ..|+++++||+|+.+..+...
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~-~l~~~lg-~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHS-FIATLLG-IKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHH-HHHHHhC-CCceEEEEEeeccccchhHHH
Confidence            34457899999999988766665679999999999987642211 11111 1222222 246888999999864332112


Q ss_pred             H----HHHHHHHhc----CCeEEEeccCCCCCHHHH
Q 030524          135 E----EGEAKSREL----NVMFIETSAKAGFNIKLC  162 (175)
Q Consensus       135 ~----~~~~~~~~~----~~~~~~~s~~~~~~v~~~  162 (175)
                      .    +...+....    .++++++|+++|+|+.++
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            2    222223333    368999999999998764

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=3.8e-17  Score=123.78  Aligned_cols=163  Identities=18%  Similarity=0.175  Sum_probs=118.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC--CC-----------cccccceeeEEEEEE---EECCeEEEEEEEeCCCccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DN-----------TYQATIGIDFLSKTM---YLEDRTVRLQLWDTAGQER   70 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~-----------~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~   70 (175)
                      .+-.++.++-+-..|||||.++|+...-  ..           +-....+++......   ..++..+.++++|||||-+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            4557899999999999999999986321  11           011223334333322   2246678999999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHhcCCeEE
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELNVMFI  149 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~  149 (175)
                      |......-+.-|+++++|+|++.+-.-+.+..++..+.    .+..+|.|+||+|+..++... ...........+.+.+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            99999999999999999999998766666666666665    478899999999986543211 2222333333345899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhhh
Q 030524          150 ETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      .+||+.|.|+.++++.+++.+.+.
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVPpP  237 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVPPP  237 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCCCC
Confidence            999999999999999999887543

>COG2262 HflX GTPases [General function prediction only]

Probab=99.74  E-value=1.5e-16  Score=117.38  Aligned_cols=159  Identities=19%  Similarity=0.169  Sum_probs=110.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--c------ccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--L------IPSYI   79 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--~------~~~~~   79 (175)
                      .-..|.++|-+|+|||||+|.|.+........-..+.+.....+.+.+ +..+.+.||.|.-+...  +      +-...
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            347899999999999999999998665544444444565666666665 34789999999432111  1      11225


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      ..+|.++.|+|+++|...+.+..-...+......++|++++.||.|+..+..     ....+....-..+.+||++|+|+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl  344 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGL  344 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCH
Confidence            6899999999999996555555544444433336799999999999764433     11111111115899999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030524          160 KLCCHTLNSLITV  172 (175)
Q Consensus       160 ~~~f~~l~~~~~~  172 (175)
                      +.+...|.+.+..
T Consensus       345 ~~L~~~i~~~l~~  357 (411)
T COG2262         345 DLLRERIIELLSG  357 (411)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999998887764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=8.8e-17  Score=115.38  Aligned_cols=159  Identities=21%  Similarity=0.220  Sum_probs=106.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc-c-----cccc---ccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-E-----RFRS---LIP   76 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-~-----~~~~---~~~   76 (175)
                      .....|++.|.||||||||++.+..-... ..|..|. ...+.-....  +...++++||||. +     +..-   .+.
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT-K~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~  242 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT-KGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAIL  242 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc-cceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence            45688999999999999999999987765 3343333 2333333322  3357999999992 1     1111   111


Q ss_pred             ccccCCcEEEEEEECCC--hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEecc
Q 030524           77 SYIRDSSVAVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSA  153 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~  153 (175)
                      ..-.-.++++|++|.+.  ..+.+....++.++.....  .|+++|.||.|+.+....  ++.......-+ .....+++
T Consensus       243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~  318 (346)
T COG1084         243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISA  318 (346)
T ss_pred             HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceee
Confidence            11123689999999984  4577778888888888764  899999999998643332  23333333334 35778888


Q ss_pred             CCCCCHHHHHHHHHHHHhh
Q 030524          154 KAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~~  172 (175)
                      ..+.+++.+-..+...+..
T Consensus       319 ~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         319 TKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eehhhHHHHHHHHHHHhhc
Confidence            8888888777766665443

>PLN03126 Elongation factor Tu; Provisional

Probab=99.74  E-value=5.2e-17  Score=125.17  Aligned_cols=148  Identities=17%  Similarity=0.135  Sum_probs=97.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC------CCC--------cccccceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK------FDN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (175)
                      ...++|+++|++++|||||+++|+...      ...        ......+++.......++.....+.++|+||+++|.
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~  158 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV  158 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence            457999999999999999999998521      110        112223333333333333344578999999999998


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHhc----
Q 030524           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL----  144 (175)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~---~~~~~~~~~~~~----  144 (175)
                      ..+...+..+|++++|+|+.+...- ..++++..+..   .++| +++++||+|+.+..+.   ...+...+....    
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~  234 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG  234 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            8777778899999999998865322 22333333322   3677 6788999998642211   122344455443    


Q ss_pred             -CCeEEEeccCCCCC
Q 030524          145 -NVMFIETSAKAGFN  158 (175)
Q Consensus       145 -~~~~~~~s~~~~~~  158 (175)
                       +++++.+|+.+|.+
T Consensus       235 ~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        235 DDIPIISGSALLALE  249 (478)
T ss_pred             CcceEEEEEcccccc
Confidence             46899999998853

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.74  E-value=6e-17  Score=126.24  Aligned_cols=117  Identities=22%  Similarity=0.248  Sum_probs=80.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC--C---------------Cc---ccccceeeEEEEEEEECCeEEEEEEEeCC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D---------------NT---YQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (175)
                      .+..+|+++|++++|||||.++|+...-  .               .+   .....+.++......++...+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3567999999999999999999974110  0               00   00112333333334444455789999999


Q ss_pred             CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      |+.+|.......+..+|++|+|+|+++.... ....++.....   .++|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            9999988777788999999999999875322 12333332222   579999999999975

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.73  E-value=4.2e-17  Score=125.15  Aligned_cols=153  Identities=20%  Similarity=0.197  Sum_probs=98.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCC--CCC---------------------------cccccceeeEEEEEEEECCe
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--FDN---------------------------TYQATIGIDFLSKTMYLEDR   56 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~   56 (175)
                      ....++|+++|+.++|||||+.+|+...  ...                           ......+.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            3456999999999999999999997621  110                           00011223333333444555


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hH---HhHHHHHHHHHHhcCCCCc-EEEEEeCCCCC--
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLV--  127 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~--  127 (175)
                      ...+.++|+|||.+|...+...+..+|++++|+|+..+.   .+   ...++.+..+..   .++| +++++||+|..  
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccc
Confidence            678999999999999888888889999999999998652   11   122333222222   3666 56899999943  


Q ss_pred             CCCCCC----HHHHHHHHHhc-----CCeEEEeccCCCCCHHH
Q 030524          128 EKRQVS----IEEGEAKSREL-----NVMFIETSAKAGFNIKL  161 (175)
Q Consensus       128 ~~~~~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~  161 (175)
                      +..+..    ..+...+....     +++++++|+.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            211111    22333333333     36799999999999864

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.73  E-value=4.2e-17  Score=124.12  Aligned_cols=149  Identities=22%  Similarity=0.250  Sum_probs=93.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC--C-------------cc----------------cccceeeEEEEEEEECCeEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD--N-------------TY----------------QATIGIDFLSKTMYLEDRTV   58 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~--~-------------~~----------------~~~~~~~~~~~~~~~~~~~~   58 (175)
                      ++|+++|+.++|||||+++|+...-.  .             ..                ....+++.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999753211  0             00                00111222222233333445


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC----H
Q 030524           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS----I  134 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~----~  134 (175)
                      ++.++||||+++|...+...+..+|++++|+|+..+..-+. .+.+. +....+ ..++++++||+|+.+.....    .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~-~~~~~~-~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSY-IASLLG-IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHH-HHHHcC-CCcEEEEEEecccccchHHHHHHHH
Confidence            78999999999987766677889999999999876532211 22112 222222 23588899999986432211    1


Q ss_pred             HHHHHHHHhcC---CeEEEeccCCCCCHHH
Q 030524          135 EEGEAKSRELN---VMFIETSAKAGFNIKL  161 (175)
Q Consensus       135 ~~~~~~~~~~~---~~~~~~s~~~~~~v~~  161 (175)
                      ++...+.+..+   ++++++||++|+|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            22233334443   4799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.73  E-value=1.7e-16  Score=120.49  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=102.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCC--------------CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      ....++|+++|+.++|||||+++|++....              .......+.+..............+.+.||||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            356799999999999999999999873110              000112333333334444444457899999999888


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHhc---
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSREL---  144 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nk~D~~~~~~~---~~~~~~~~~~~~---  144 (175)
                      .......+..+|++++|+|+..+.. .....++..+..   .++|.+ +++||+|+.+..+.   ...+...+....   
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            8777777889999999999976532 122333333322   357875 57899998642211   122333444433   


Q ss_pred             --CCeEEEeccCCCC----------CHHHHHHHHHHH
Q 030524          145 --NVMFIETSAKAGF----------NIKLCCHTLNSL  169 (175)
Q Consensus       145 --~~~~~~~s~~~~~----------~v~~~f~~l~~~  169 (175)
                        +++++.+|+++|.          ++.++++.|.+.
T Consensus       165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence              3689999999875          456666666553

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=3.7e-17  Score=120.51  Aligned_cols=157  Identities=23%  Similarity=0.272  Sum_probs=106.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cccccceeeEEEEEEEECC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN---------------------------TYQATIGIDFLSKTMYLED   55 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~   55 (175)
                      ....+++++++|+..+|||||+.+|+...-  +.                           ......+++.......++.
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            345679999999999999999999986421  00                           0111244556666666777


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHhHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~-~~~~iiv~nk~D~~~~~~  131 (175)
                      +.+.+.+.|+|||.+|-..+-.-..++|+.|+|+|+.+.+   +|.......+++....-. -..+++++||+|+.+..+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde  162 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence            7788999999999999998888899999999999998763   222211222222222222 344677789999876544


Q ss_pred             CCHHHH----HHHHHhcC-----CeEEEeccCCCCCHHH
Q 030524          132 VSIEEG----EAKSRELN-----VMFIETSAKAGFNIKL  161 (175)
Q Consensus       132 ~~~~~~----~~~~~~~~-----~~~~~~s~~~~~~v~~  161 (175)
                      ...++.    ..+.+..|     ++|+++|+..|+|+.+
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            333332    22333333     5799999999999864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=1.6e-17  Score=120.25  Aligned_cols=131  Identities=17%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcc-------------cc---cceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-------------QA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (175)
                      +|+++|++|+|||||+++++...-....             .+   ..+.........+....+.+.+|||||+.++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999753211000             00   0111111111222223357899999999988888


Q ss_pred             ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe
Q 030524           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (175)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~  147 (175)
                      +...+..+|++++|+|+++.........| ..+..   .++|.++++||+|.....  .......+...++.+
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~  147 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRP  147 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCC
Confidence            88889999999999999876544333322 22222   468999999999975431  222333444444543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.72  E-value=8.4e-17  Score=128.64  Aligned_cols=154  Identities=22%  Similarity=0.224  Sum_probs=95.6

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCc-------------ccc------------------cceeeEEEEEEEE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------YQA------------------TIGIDFLSKTMYL   53 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~   53 (175)
                      +....++|+++|++++|||||+++|+...-...             ...                  ..+++........
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            445679999999999999999999986421100             000                  0111111222223


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 030524           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (175)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~  133 (175)
                      .....++.++||||+++|...+...+..+|++++|+|+..+..-+ ....+..+. .. ...++++++||+|+.+..+..
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~-~~-~~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIAS-LL-GIRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHH-Hh-CCCeEEEEEEecccccchhHH
Confidence            333456889999999988766666788999999999997653211 122222222 11 235688899999986422211


Q ss_pred             H----HHHHHHHHhcC---CeEEEeccCCCCCHHH
Q 030524          134 I----EEGEAKSRELN---VMFIETSAKAGFNIKL  161 (175)
Q Consensus       134 ~----~~~~~~~~~~~---~~~~~~s~~~~~~v~~  161 (175)
                      .    .+...+....+   ++++++||++|+|+.+
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1    22333344444   4699999999999874

>PLN03127 Elongation factor Tu; Provisional

Probab=99.72  E-value=1.8e-16  Score=121.56  Aligned_cols=159  Identities=17%  Similarity=0.133  Sum_probs=99.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcC------CC----------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYD------KF----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (175)
                      ...+++|+++|+.++|||||+++|.+.      ..          ..+..  .+++........+....++.++||||+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~--rGiTi~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKA--RGITIATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhh--cCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence            456799999999999999999999732      10          01111  2333333444444445678999999998


Q ss_pred             cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHhc-
Q 030524           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSREL-  144 (175)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~~---~~~~~~~~~~~-  144 (175)
                      +|...+..-+..+|++++|+|+.++..- .....+..+. .  .++| +++++||+|+.+..+..   ..+...+.... 
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~-~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLAR-Q--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHH-H--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            8877666667789999999998765321 1222222222 2  3688 46789999986422211   11222333322 


Q ss_pred             ----CCeEEEeccC---CCCC-------HHHHHHHHHHHH
Q 030524          145 ----NVMFIETSAK---AGFN-------IKLCCHTLNSLI  170 (175)
Q Consensus       145 ----~~~~~~~s~~---~~~~-------v~~~f~~l~~~~  170 (175)
                          .++++++|+.   +|.|       +.++++.+.+.+
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence                3688888876   4544       677777776553

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=1.1e-16  Score=115.51  Aligned_cols=112  Identities=21%  Similarity=0.227  Sum_probs=76.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC------------------CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (175)
                      +|+++|++|+|||||+++|+...-.                  .+.....+++.....+..+  ..++.++||||+.++.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence            5899999999999999999742110                  1111122222222333333  4678999999999888


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      ..+...+..+|++|+|+|+.+...-+ ....+..+..   .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            88889999999999999998753222 2222232222   4689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=2.3e-16  Score=117.95  Aligned_cols=166  Identities=16%  Similarity=0.133  Sum_probs=121.0

Q ss_pred             CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-------------cccccceeeEEEEE----EE-ECCeEEEEEEE
Q 030524            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-------------TYQATIGIDFLSKT----MY-LEDRTVRLQLW   63 (175)
Q Consensus         2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~~~~~~~----~~-~~~~~~~~~i~   63 (175)
                      .+++..+-.+..++.+-..|||||.+|++...-.-             +.....+++.....    .. -+|..+.++++
T Consensus         2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI   81 (603)
T COG0481           2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI   81 (603)
T ss_pred             CccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEc
Confidence            34555566788999999999999999997632110             01112233322222    22 25678999999


Q ss_pred             eCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 030524           64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (175)
Q Consensus        64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~  143 (175)
                      |||||-+|......-+..|.+.++|+|++.+-.-+.+.+.+..+.    .+.-++.|+||.|++....  ..-..+...-
T Consensus        82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~  155 (603)
T COG0481          82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDI  155 (603)
T ss_pred             CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHH
Confidence            999999999999999999999999999998866666777766665    4688899999999965432  2233334444


Q ss_pred             cCC---eEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          144 LNV---MFIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       144 ~~~---~~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      .|+   ..+.+||++|.|+.++++.+++.+-+.
T Consensus       156 iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P  188 (603)
T COG0481         156 IGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP  188 (603)
T ss_pred             hCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence            555   579999999999999999999887543

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=5.1e-16  Score=117.82  Aligned_cols=156  Identities=18%  Similarity=0.185  Sum_probs=118.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      +++.-|.++|+...|||||++.|.+...........+.++....+..+. +-.++|.|||||.-|..+...-..-.|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            3678899999999999999999988776555444555555566666663 357999999999999999999989999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC---------CeEEEeccCCCC
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF  157 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~  157 (175)
                      +|+.+.|.-    ....++.+......++|+++++||+|.+   ..+.....+....+|         ++.+++||++|+
T Consensus       230 LVVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp---~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  230 LVVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKP---GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCC---CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            999998762    2233344444555789999999999964   334455555544444         468999999999


Q ss_pred             CHHHHHHHHHHHH
Q 030524          158 NIKLCCHTLNSLI  170 (175)
Q Consensus       158 ~v~~~f~~l~~~~  170 (175)
                      |+..+-+.++-.+
T Consensus       303 nl~~L~eaill~A  315 (683)
T KOG1145|consen  303 NLDLLEEAILLLA  315 (683)
T ss_pred             ChHHHHHHHHHHH
Confidence            9999988765443

>PRK13351 elongation factor G; Reviewed

Probab=99.70  E-value=2.4e-16  Score=127.22  Aligned_cols=118  Identities=21%  Similarity=0.276  Sum_probs=82.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCC-------------Ccccc---cceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------NTYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (175)
                      .+..+|+++|+.|+|||||+++|+...-.             .++.+   ..+.+.......+......+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            45689999999999999999999853210             00000   111222222222223346899999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      |...+..++..+|++++|+|++++...+....| ..+..   .++|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            999999999999999999999987665544444 22222   4789999999999753

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.70  E-value=1.1e-15  Score=105.86  Aligned_cols=159  Identities=11%  Similarity=0.103  Sum_probs=96.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCccc--ccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP   76 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   76 (175)
                      ++|+++|.+|+|||||+|.+++........  +..+.+........++  ..+.++||||..+...           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999976542221  1222222333333444  4689999999543321           112


Q ss_pred             ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCC------CHHHHHHHHHhcCCeE
Q 030524           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELNVMF  148 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~~~~------~~~~~~~~~~~~~~~~  148 (175)
                      ....+.|++++|+++.+ .+- .....++.+....+.  -.+++++.|+.|.......      .....+....+.+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999876 221 223334444444332  2567888899996443211      1234555556656555


Q ss_pred             EEec-----cCCCCCHHHHHHHHHHHHhh
Q 030524          149 IETS-----AKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       149 ~~~s-----~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +..+     +..+.++.++++.+.+.+..
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            5554     34567788888887776654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.69  E-value=4.4e-17  Score=109.76  Aligned_cols=118  Identities=18%  Similarity=0.366  Sum_probs=76.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccc---cccCCcEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS---YIRDSSVA   85 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~   85 (175)
                      .-.|+++||.|+|||+|..+|..+....+..+... . ..... -......+.++|+|||++.+.....   +..++.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n-~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-N-IAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-E-EECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-C-ceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            45789999999999999999999865555444421 1 11111 1223346899999999988874444   47899999


Q ss_pred             EEEEECCC-hhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCC
Q 030524           86 VVVYDVAS-RQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEK  129 (175)
Q Consensus        86 i~v~d~~~-~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~  129 (175)
                      |||+|.+. +..+..+.+++-.+.....   ..+|++++.||.|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999974 4566777666666655433   78999999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.69  E-value=4.8e-16  Score=119.19  Aligned_cols=163  Identities=17%  Similarity=0.139  Sum_probs=102.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCC---CCcccccceeeEEEEEE---------------EEC-C-----------
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTM---------------YLE-D-----------   55 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~-~-----------   55 (175)
                      ....++|+++|+..+|||||+..|.+...   ..+.....+.+..-...               ..+ +           
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            35679999999999999999999997432   11211111111100000               000 0           


Q ss_pred             ----eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524           56 ----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        56 ----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                          ....+.++|+|||+.|...+...+..+|++++|+|+.++..-....+.+. +....+ -.++++++||+|+.+...
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHHH
Confidence                02368999999999998877777889999999999986421112223322 222221 245788999999864222


Q ss_pred             C--CHHHHHHHHHh---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          132 V--SIEEGEAKSRE---LNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       132 ~--~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      .  ..++.+.+...   .+++++++|+++|+|++++.+.|.+.+
T Consensus       189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            1  12222333222   356999999999999999999988644

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=7.2e-16  Score=97.97  Aligned_cols=106  Identities=20%  Similarity=0.251  Sum_probs=67.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR   80 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   80 (175)
                      +|+++|.+|+|||||+|+|++.... ....+..+..........++..  +.++||||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999985432 2222222223333444456644  579999994321         112233348


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeC
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk  123 (175)
                      .+|++++|+|.+++.. +.....+..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999877421 22233333332    57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=1.9e-15  Score=111.08  Aligned_cols=81  Identities=20%  Similarity=0.377  Sum_probs=54.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCC------CcccccceeeEEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKT---------------MYLED-RTVRLQLWDTAGQ-   68 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~G~-   68 (175)
                      |+++|.||+|||||++++.+....      .+..+..+..+....               ...++ ..+.+.+||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987643      222333333222110               00122 3367999999996 


Q ss_pred             ---ccccccccc---cccCCcEEEEEEECC
Q 030524           69 ---ERFRSLIPS---YIRDSSVAVVVYDVA   92 (175)
Q Consensus        69 ---~~~~~~~~~---~~~~~d~~i~v~d~~   92 (175)
                         +++..+...   .++++|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               344444344   388999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.4e-15  Score=109.79  Aligned_cols=160  Identities=18%  Similarity=0.101  Sum_probs=106.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-------cccccccCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDS   82 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~   82 (175)
                      -|.++|-||+|||||++.+..-+.. .+|..|+-.........  ...-.|.+-|.||.-+-.+       ..-.-+..+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~--~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV--DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe--cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            4679999999999999999885543 55655554333322222  2233689999999432111       112225678


Q ss_pred             cEEEEEEECCChh---hHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE-EEeccCCC
Q 030524           83 SVAVVVYDVASRQ---SFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMF-IETSAKAG  156 (175)
Q Consensus        83 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~  156 (175)
                      -+++.|+|++..+   ..+.......++..+..  .+.|.++++||+|+....+......+.+.+..++.. +.+|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            9999999998543   24444444455555533  689999999999976555444445555565566532 23999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 030524          157 FNIKLCCHTLNSLITV  172 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~~  172 (175)
                      +|++++...+.+.+..
T Consensus       319 ~g~~~L~~~~~~~l~~  334 (369)
T COG0536         319 EGLDELLRALAELLEE  334 (369)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999988877654

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.1e-15  Score=114.75  Aligned_cols=162  Identities=19%  Similarity=0.212  Sum_probs=103.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-ccc--------cccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRS--------LIPS   77 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~~~   77 (175)
                      ..++|+++|+||+|||||+|.|...... ....+..+.|.....++++|  +++.+.||+|-.+ -..        ..+.
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            4689999999999999999999987654 33344444555566666555  7799999999543 111        1234


Q ss_pred             cccCCcEEEEEEEC--CChhhHHhHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC---C
Q 030524           78 YIRDSSVAVVVYDV--ASRQSFLNTSKWIDEVRTERG------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---V  146 (175)
Q Consensus        78 ~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~~~------~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~---~  146 (175)
                      .+..+|++++|+|+  ++-++-..+.+.+.....-..      ...|++++.||.|+...-.........+....+   .
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            47789999999999  333332333444443332221      347899999999986541111111111111111   2


Q ss_pred             -eEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          147 -MFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       147 -~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                       ...++|+++++|++++-+.+.+...
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHH
Confidence             4566999999999999988776553

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.65  E-value=4.1e-15  Score=120.04  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=80.8

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCC--------C----------cccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------N----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      ..+-.+|+++|++++|||||+++|+...-.        .          +.....+++.....+..+  +.++.+|||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence            334579999999999999999999752110        0          001122223333333334  46799999999


Q ss_pred             cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      +.++...+...+..+|++++|+|+.+....+....| ..+..   .++|+++++||+|+..
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence            998888888889999999999999876544432222 22222   4689999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK12739 elongation factor G; Reviewed

Probab=99.64  E-value=7.4e-15  Score=118.53  Aligned_cols=116  Identities=20%  Similarity=0.212  Sum_probs=79.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC--------C----------CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------D----------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      .+-.+|+++|++++|||||+++|+...-        .          .+.....+++.....+..+  ..++.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence            3457899999999999999999975211        0          0012222333333333343  457899999999


Q ss_pred             ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      .+|...+...+..+|++++|+|+.++..-+. ...+..+..   .++|.++++||+|+..
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            9888888888999999999999987643222 222222222   4689999999999863

>TIGR00503 prfC peptide chain release factor 3

Probab=99.64  E-value=4.7e-15  Score=115.76  Aligned_cols=118  Identities=20%  Similarity=0.207  Sum_probs=82.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC-CCC-------------------cccccceeeEEEEEEEECCeEEEEEEEeCC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDN-------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (175)
                      .+..+|+++|++++|||||+++|+... ...                   ......++++......++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            456899999999999999999986421 100                   001123344444445555566789999999


Q ss_pred             CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      |+.+|.......+..+|++|+|+|+++... .....+++.. ..  .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh--cCCCEEEEEECccccC
Confidence            999888877778899999999999987421 1223333322 22  4789999999999753

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=2e-15  Score=106.19  Aligned_cols=162  Identities=16%  Similarity=0.249  Sum_probs=106.3

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEE-EECCeEEEEEEEeCCCccc-------ccccccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQER-------FRSLIPS   77 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~   77 (175)
                      ...+++|+++|.+|+|||||+|+|..+...+-..-..+.+.....+ ..++  -.+.+||+||-++       |+.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            4568999999999999999999999755433221111222222222 1222  4689999999543       7777888


Q ss_pred             cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHHhc------
Q 030524           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSREL------  144 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-------~~~~~~~~~~~~~~~------  144 (175)
                      ++...|.++.+.++.|+.- .--..++..+.... -+.++++++|.+|....       ........+++..+.      
T Consensus       114 ~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccc-cCCHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999988742 12233444444433 34899999999997532       111222222222211      


Q ss_pred             ----CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          145 ----NVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       145 ----~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                          --|++.++.+.+.|++++...+++.+.
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence                127888999999999999998887653

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.62  E-value=5.7e-14  Score=100.88  Aligned_cols=154  Identities=19%  Similarity=0.210  Sum_probs=104.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR   80 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~   80 (175)
                      -.-+++++|+|++|||||++.|.+-.......+..+.+...-....  ++..+++.|+||--+-       ....-..++
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y--~ga~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY--KGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee--cCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            4578999999999999999999987665433333333444333333  4477999999983211       123445678


Q ss_pred             CCcEEEEEEECCChhh-HHhHHHHHHHHHHhcC---C-------------------------------------------
Q 030524           81 DSSVAVVVYDVASRQS-FLNTSKWIDEVRTERG---S-------------------------------------------  113 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~---~-------------------------------------------  113 (175)
                      +||.+|+|+|+..... .+.+.+.++..-....   +                                           
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999986544 4445554444322111   0                                           


Q ss_pred             -------------------CCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          114 -------------------DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       114 -------------------~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                                         =+|.+.+.||.|+..     .++...+.+..  ..+.+||..+.|++++.+.+...+
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                               278899999999743     33444455444  789999999999999988876543

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.62  E-value=1.5e-14  Score=104.86  Aligned_cols=152  Identities=22%  Similarity=0.311  Sum_probs=110.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCC--Cc-----------------------------ccccceeeEEEEEEEEC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--NT-----------------------------YQATIGIDFLSKTMYLE   54 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~   54 (175)
                      ....++++-+|...-|||||+.||++....  ++                             .....++++......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            345689999999999999999999875321  00                             01123455555555555


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-  133 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-  133 (175)
                      -.+.+|.+-|||||+.|...+..-...||..|+++|+  +.+..+..+.-..+....+ -..+++..||+||.+..+.. 
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence            6667899999999999999999999999999999998  4445554443344444433 34577888999998765544 


Q ss_pred             ---HHHHHHHHHhcCC---eEEEeccCCCCCHH
Q 030524          134 ---IEEGEAKSRELNV---MFIETSAKAGFNIK  160 (175)
Q Consensus       134 ---~~~~~~~~~~~~~---~~~~~s~~~~~~v~  160 (175)
                         ..+...|+.++++   .++++||..|+|+-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence               3445677888886   68999999999875

>PRK12740 elongation factor G; Reviewed

Probab=99.58  E-value=5e-14  Score=113.66  Aligned_cols=107  Identities=21%  Similarity=0.249  Sum_probs=73.6

Q ss_pred             ECCCCCCHHHHHHHHhcCCCC--------C----------cccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 030524           15 LGDQSVGKTSIITRFMYDKFD--------N----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP   76 (175)
Q Consensus        15 ~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   76 (175)
                      +|++++|||||+++|+...-.        .          +..+..++......+..+  .+.+.+|||||+.++...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence            699999999999999653110        0          011122222222333333  46799999999998888888


Q ss_pred             ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      ..+..+|++++|+|.++.........| ..+..   .++|+++++||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            889999999999999876555443333 22222   468999999999975

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=4e-14  Score=114.30  Aligned_cols=116  Identities=18%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC--------C----------CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------D----------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      .+-.+|+++|++++|||||+++|+...-        .          .+.....+++.....+...  ...+.++||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCc
Confidence            3457999999999999999999974210        0          0012223333333333344  357999999999


Q ss_pred             ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      .+|.......+..+|++++|+|+.....-+... .+..+..   .++|.++++||+|+..
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            888777777788999999999987654333322 2222222   4688999999999864

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.58  E-value=9.9e-14  Score=104.92  Aligned_cols=82  Identities=22%  Similarity=0.358  Sum_probs=53.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEE---------------------ECC-eEEEEEEEeCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMY---------------------LED-RTVRLQLWDTA   66 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~   66 (175)
                      ++|+++|.||+|||||+|+|.+..... ++.. .+.+.......                     .++ ....+.+||+|
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f-~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPF-TTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCC-cceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            689999999999999999999876543 3321 11111111111                     111 23678999999


Q ss_pred             Cc----cccccccccc---ccCCcEEEEEEECC
Q 030524           67 GQ----ERFRSLIPSY---IRDSSVAVVVYDVA   92 (175)
Q Consensus        67 G~----~~~~~~~~~~---~~~~d~~i~v~d~~   92 (175)
                      |.    .+...+-..+   ++++|++++|+|+.
T Consensus        81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            94    2233333344   78999999999996

>cd00066 G-alpha G protein alpha subunit

Probab=99.57  E-value=8.9e-14  Score=102.73  Aligned_cols=117  Identities=20%  Similarity=0.265  Sum_probs=87.7

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~  124 (175)
                      ....+.+||++|+...+..|.+++.+++++|||+|+++.          ..+.+....+..+..... .+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            346799999999999999999999999999999999974          456666666666665543 689999999999


Q ss_pred             CCCCC----------------CCCCHHHHHHHHHh----------cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          125 DLVEK----------------RQVSIEEGEAKSRE----------LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       125 D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      |+..+                ...+...+..+...          ..+-...++|.+.+++..+|+.+.+.+..
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~  312 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ  312 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence            96321                12233344333322          23456778999999999999998887764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.57  E-value=1.5e-13  Score=105.27  Aligned_cols=161  Identities=17%  Similarity=0.190  Sum_probs=120.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ..+.+++.++|+.++|||.+++.++++.+...+..+....+....+...+..-.+.+.|.+-. ....+...- ..||++
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            345689999999999999999999998887766666666666666666677667788887654 333333333 679999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~  164 (175)
                      .++||.+++.+|+.+...++.....  ...|+++|++|+|+.+..+...-.-.+++.++++ +....|.+...+ .++|.
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~  576 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI  576 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence            9999999999999988766655444  5899999999999976554333333889999998 556677774333 88998


Q ss_pred             HHHHHHh
Q 030524          165 TLNSLIT  171 (175)
Q Consensus       165 ~l~~~~~  171 (175)
                      .|...++
T Consensus       577 kL~~~A~  583 (625)
T KOG1707|consen  577 KLATMAQ  583 (625)
T ss_pred             HHHHhhh
Confidence            8876654

>PRK09866 hypothetical protein; Provisional

Probab=99.57  E-value=2.9e-13  Score=105.76  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=72.2

Q ss_pred             EEEEEEeCCCccc-----ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           58 VRLQLWDTAGQER-----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        58 ~~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      ..+.+.||||-..     ....+...+..+|+++||+|..+..+... ....+.+. ..+...|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lk-k~~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAIL-AVGQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHH-hcCCCCCEEEEEEcccCCCcccc
Confidence            3578999999543     22244557899999999999986433322 12222232 22234699999999998543333


Q ss_pred             CHHHHHHHHH----hcC---CeEEEeccCCCCCHHHHHHHHHH
Q 030524          133 SIEEGEAKSR----ELN---VMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus       133 ~~~~~~~~~~----~~~---~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ..+....+..    ..+   ..++++||+.|.|++++.+.+.+
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            3444444432    112   26999999999999999998876

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.56  E-value=1.3e-13  Score=113.93  Aligned_cols=142  Identities=21%  Similarity=0.204  Sum_probs=94.0

Q ss_pred             CHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeE----------------EEEEEEeCCCcccccccccccccCCcE
Q 030524           21 GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------------VRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus        21 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +||||++.+.+...........+.+.....+..+...                -.+.||||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999877655444444444444444333110                128999999999998888878889999


Q ss_pred             EEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-C-----------HHH-HHHH--------
Q 030524           85 AVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-S-----------IEE-GEAK--------  140 (175)
Q Consensus        85 ~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~-----------~~~-~~~~--------  140 (175)
                      +++|+|+++   +.+++.+.    .+..   .++|+++++||+|+...... .           .+. ..++        
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999986   33333332    2222   36899999999998532110 0           000 0000        


Q ss_pred             --HHhc---------------CCeEEEeccCCCCCHHHHHHHHHHH
Q 030524          141 --SREL---------------NVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       141 --~~~~---------------~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                        ..+.               .++++++||++|+|+.++..+|...
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence              1111               3589999999999999999887644

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.56  E-value=3.6e-14  Score=99.26  Aligned_cols=159  Identities=11%  Similarity=0.084  Sum_probs=90.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccc--cceeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccc----c
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLI----P   76 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~----~   76 (175)
                      ++|+|+|.+|+||||++|.+++.........  +.+..........++  ..+.++||||..+..       ..+    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            5899999999999999999999876544322  222233333335566  568999999942211       111    1


Q ss_pred             ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCCC-------HHHHHHHHHhcCCe
Q 030524           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVS-------IEEGEAKSRELNVM  147 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~~~~~-------~~~~~~~~~~~~~~  147 (175)
                      ...++.|++++|+.+. +-+-. .+..++.+....++  -..++++.|..|...+....       ......+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~-~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEE-DREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHH-HHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchHH-HHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            2346789999999987 32221 23333444444442  23577778888854443311       12244556666767


Q ss_pred             EEEeccC------CCCCHHHHHHHHHHHHhh
Q 030524          148 FIETSAK------AGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       148 ~~~~s~~------~~~~v~~~f~~l~~~~~~  172 (175)
                      +...+.+      ....+.+++..+-+.+..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~  187 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQE  187 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence            7777666      234566777766555443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.56  E-value=1.4e-14  Score=90.04  Aligned_cols=136  Identities=23%  Similarity=0.276  Sum_probs=97.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc----ccccccccccccCCcEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i   86 (175)
                      ||+++|..|.|||||.+.|.+..  ..+..|..+++...           -.+||||.    ..+.+........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~--~lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGND--TLYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcch--hhhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            79999999999999999988763  23344444332111           25799983    333333444456899999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|-+++++++--.-     .+...  -..|+|-+++|.|+.+  ..+....+++..+-|. ++|++|+.++.|+++++++
T Consensus        70 ~v~~and~~s~f~p-----~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFPP-----GFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCCc-----ccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999988642110     11111  2456888999999965  4456678888888898 8999999999999999999


Q ss_pred             HHH
Q 030524          166 LNS  168 (175)
Q Consensus       166 l~~  168 (175)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            864

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.55  E-value=3.6e-13  Score=97.75  Aligned_cols=122  Identities=13%  Similarity=0.164  Sum_probs=73.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-------ccc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIP   76 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~   76 (175)
                      ++...++|+++|.+|+||||++|++++..... ....+.+.+........+  +.++.++||||..+...       ..+
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            34568999999999999999999999876431 112222222222223334  36799999999653321       122


Q ss_pred             ccc--cCCcEEEEEEECCChhhHH-hHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCC
Q 030524           77 SYI--RDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERG--SDVIIVLVGNKTDLVEK  129 (175)
Q Consensus        77 ~~~--~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~  129 (175)
                      .++  ...|+++||..++.. .+. .-...++.+...++  .-.+.+++.|+.|..++
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            222  268999999765432 122 12333444444433  12468889999997543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.55  E-value=4.3e-14  Score=100.81  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             ccccccccccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~  147 (175)
                      +++..+.+.++.++|++++|||+.++. ++..+.+|+..+..   .++|+++|+||+|+.+..+...+..+.+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            677888899999999999999999887 89999999876543   5799999999999965444333344444 357889


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 030524          148 FIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus       148 ~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ++++||++|+|++++|..+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.55  E-value=2.3e-13  Score=97.04  Aligned_cols=121  Identities=16%  Similarity=0.174  Sum_probs=73.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCc-ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc----------c
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------L   74 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~   74 (175)
                      ...+++|+++|.+|+|||||+|++++...... .....+..........++  ..+.+|||||..+...          .
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            34679999999999999999999999764322 222222233333333444  5689999999654311          1


Q ss_pred             cccccc--CCcEEEEEEECCCh-hhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCC
Q 030524           75 IPSYIR--DSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK  129 (175)
Q Consensus        75 ~~~~~~--~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~  129 (175)
                      ...+++  ..|++++|..++.. .... -...++.+....+.  -.++++|.||+|...+
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            223333  57888888766542 1222 12333444443332  2468999999997543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=7.3e-14  Score=106.87  Aligned_cols=154  Identities=25%  Similarity=0.294  Sum_probs=107.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC-----------------------------CCcccccceeeEEEEEEEECCeE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-----------------------------DNTYQATIGIDFLSKTMYLEDRT   57 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   57 (175)
                      ...++++++|+..+|||||+.+++..--                             +....+..+++.......++...
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            4579999999999999999999875210                             11122234555566666667777


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHhHH--HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTS--KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~--~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      ..+++.|+|||..|...+-.-..++|+.|+|+|++..+   +|+...  +....+.+..+ -..+++++||+|++...+.
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHH
Confidence            78999999999999998888899999999999997431   333211  22222333332 3456777899999876665


Q ss_pred             CHHHHH----HHH-HhcC-----CeEEEeccCCCCCHHH
Q 030524          133 SIEEGE----AKS-RELN-----VMFIETSAKAGFNIKL  161 (175)
Q Consensus       133 ~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~v~~  161 (175)
                      ..+++.    .|. +..|     +.|++||+..|+|+-.
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            555543    333 2333     4799999999999764

>TIGR00101 ureG urease accessory protein UreG

Probab=99.54  E-value=3.4e-13  Score=93.29  Aligned_cols=104  Identities=16%  Similarity=0.125  Sum_probs=66.4

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~  137 (175)
                      ....++++.|..-..... ..  -+|.+|.|+|+.+.+....  .....+      ...-++++||+|+.+.........
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            456788888842111121 11  2578999999987655322  111112      122278889999875333344444


Q ss_pred             HHHHHh--cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          138 EAKSRE--LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       138 ~~~~~~--~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      .+.++.  .+.+++++|+++|+|++++|+++.+++.-
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~  197 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYALL  197 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            555554  34699999999999999999999887643

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.54  E-value=1.6e-13  Score=87.85  Aligned_cols=114  Identities=36%  Similarity=0.405  Sum_probs=81.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCccc-ccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997766553332 3322                           223334467788999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      |+..++.+++.+  |...+....+.+.|.++++||.|+.++.+....+..        .++++|+++|.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999998766  777666655567899999999998543333333332        44567888888875

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.54  E-value=3.8e-14  Score=114.81  Aligned_cols=116  Identities=21%  Similarity=0.174  Sum_probs=79.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCC---------------CCCc---ccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (175)
                      .-.+|+++|+.++|||||+++|+...               +...   +..+............++..+.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            34799999999999999999997531               1110   11122222222233456667889999999999


Q ss_pred             cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      +|.......+..+|++++|+|+.+....+....| ....   ..+.|.++++||+|..
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRL  151 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhcc
Confidence            9888888889999999999998864322221212 2221   2457888999999975

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1e-13  Score=93.99  Aligned_cols=155  Identities=23%  Similarity=0.335  Sum_probs=103.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc---CCcEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVA   85 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~   85 (175)
                      .-.|+++|+.+||||+|.-+|..+.......+...   .......++.  .+++.|.|||++.+.-...+++   ++-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            35799999999999999999988754444333222   1222222222  3899999999998888877887   78999


Q ss_pred             EEEEECCC-hhhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCC--C----HH--------------------
Q 030524           86 VVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQV--S----IE--------------------  135 (175)
Q Consensus        86 i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~~~~~--~----~~--------------------  135 (175)
                      +||+|... ..-...+..++-.+....   .+.+|++++-||.|+.-++..  .    +.                    
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            99998762 234455666555555554   478889999999998532100  0    00                    


Q ss_pred             --------HHH--HHHH--hcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524          136 --------EGE--AKSR--ELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       136 --------~~~--~~~~--~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                              ..+  +|.+  ...+.|.++|++.+ +++++-+|+.+.
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                    001  1111  12457899999988 799999998775

>smart00275 G_alpha G protein alpha subunit

Probab=99.52  E-value=3.2e-13  Score=100.56  Aligned_cols=116  Identities=16%  Similarity=0.212  Sum_probs=85.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D  125 (175)
                      ...+.+||.+|+...+..|.+++.+++++|||+|+++.          ..+.+....+..+..... .+.|+++++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            35689999999999999999999999999999999963          456666666666665433 6899999999999


Q ss_pred             CCCC---------------CCCCHHHHHHHHHh-----------cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          126 LVEK---------------RQVSIEEGEAKSRE-----------LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       126 ~~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +..+               ...+...+..+...           ..+-.+.++|.+..++..+|+.+...+..
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~  335 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ  335 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence            7421               11123333333221           12455778899999999999988777654

Subunit of G proteins that contains the guanine nucleotide binding site

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.52  E-value=1.9e-13  Score=102.41  Aligned_cols=159  Identities=16%  Similarity=0.210  Sum_probs=114.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCC--------------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKF--------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   75 (175)
                      .+|+++.+...|||||++.|+.+.-              ..+.....++++..+...+.-+.+.+.+.|||||.+|....
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            5899999999999999999998632              11223346777888877777777899999999999999999


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHH-------hcCCe
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSR-------ELNVM  147 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~~-------~~~~~  147 (175)
                      +..++=.|++++++|+.+..- ...+--   +.+....+.+.|+|+||.|....+... .++...+..       +++.|
T Consensus        86 ERvl~MVDgvlLlVDA~EGpM-PQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPM-PQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCC-Cchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            999999999999999986522 122222   222223467778889999976543321 222223322       34568


Q ss_pred             EEEeccCCCC----------CHHHHHHHHHHHHhh
Q 030524          148 FIETSAKAGF----------NIKLCCHTLNSLITV  172 (175)
Q Consensus       148 ~~~~s~~~~~----------~v~~~f~~l~~~~~~  172 (175)
                      ++..|+++|.          ++..+|+.|++.+.+
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            9999998864          688999998887644

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.50  E-value=1.6e-13  Score=103.50  Aligned_cols=164  Identities=17%  Similarity=0.106  Sum_probs=107.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc------ccccc---c
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------FRSLI---P   76 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~---~   76 (175)
                      +++..+++++|-|++||||+++.+..........+..+...+.-.  .+..-..++++||||--+      ..-.+   .
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            567789999999999999999988876655332222222222222  123345789999999211      11111   1


Q ss_pred             ccccCCcEEEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHH---HHHHHHhcCCeEEEe
Q 030524           77 SYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE---GEAKSRELNVMFIET  151 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~---~~~~~~~~~~~~~~~  151 (175)
                      ....---+++|+.|++..  .|.++...++..+.-.+ .+.|+|+++||+|+......+...   .......-++++++.
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            111223578999999854  56666666666665554 589999999999987665555433   333344445899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhh
Q 030524          152 SAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      |+.+-+|+.++-...++.+..
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             cccchhceeeHHHHHHHHHHH
Confidence            999999999887776665543

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.47  E-value=1.6e-12  Score=93.63  Aligned_cols=159  Identities=19%  Similarity=0.274  Sum_probs=112.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE--CCeEEEEEEEeCCCcccccccccccccCC----
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDS----   82 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----   82 (175)
                      .-+|+++|..++|||||+.+|-+..   +..+..+..|....+.-  +.+..+..+|-.-|.--+..+....+...    
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            4689999999999999999987754   44555555555444422  22334677887777655555554444322    


Q ss_pred             cEEEEEEECCChhhH-HhHHHHHHHHHHhcCC------------------------------------------------
Q 030524           83 SVAVVVYDVASRQSF-LNTSKWIDEVRTERGS------------------------------------------------  113 (175)
Q Consensus        83 d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~------------------------------------------------  113 (175)
                      ..+|++.|+++|+.. +.+++|..-+..+...                                                
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            578899999999654 4478887766554221                                                


Q ss_pred             -------------CCcEEEEEeCCCCC----CCCCC-------CHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524          114 -------------DVIIVLVGNKTDLV----EKRQV-------SIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       114 -------------~~~~iiv~nk~D~~----~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                                   ++|+++|.||+|..    .+.+.       .....+.||-++|..++.+|++...|++-++.+|...
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                         58999999999973    22211       1234577888899999999999999999999999876


Q ss_pred             H
Q 030524          170 I  170 (175)
Q Consensus       170 ~  170 (175)
                      .
T Consensus       289 ~  289 (473)
T KOG3905|consen  289 S  289 (473)
T ss_pred             h
Confidence            4

>PRK13768 GTPase; Provisional

Probab=99.47  E-value=1.9e-13  Score=97.93  Aligned_cols=111  Identities=21%  Similarity=0.165  Sum_probs=70.0

Q ss_pred             EEEEEeCCCccccc---ccccccc---cC--CcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524           59 RLQLWDTAGQERFR---SLIPSYI---RD--SSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (175)
Q Consensus        59 ~~~i~D~~G~~~~~---~~~~~~~---~~--~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~  129 (175)
                      .+.+||+||+.+..   ..+..++   ..  .+++++++|+........ ...++.........+.|+++++||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            68999999976533   2332222   22  899999999965432222 122222222212247999999999998644


Q ss_pred             CCCCHHHHHH----------------------------HHHhcC--CeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          130 RQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       130 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      .+.  .....                            ..++.+  .+++++|+++++|++++.++|.+.+.
T Consensus       178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            322  11111                            122334  58899999999999999999988764

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.46  E-value=3.6e-12  Score=97.91  Aligned_cols=161  Identities=20%  Similarity=0.326  Sum_probs=113.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC--CeEEEEEEEeCCCcccccccccccccC----
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRD----   81 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~----   81 (175)
                      ..-.|+|+|..++|||||+.+|.+..   +..++.+.+|....+.-+  ....++.+|...|...+..+.+..+..    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            45789999999999999999986543   345566666665554332  233568999998866666666544432    


Q ss_pred             CcEEEEEEECCChhhHHh-HHHHHHHHHHhcC------------------------------------------------
Q 030524           82 SSVAVVVYDVASRQSFLN-TSKWIDEVRTERG------------------------------------------------  112 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~------------------------------------------------  112 (175)
                      --.+|+|.|++.|+.+-+ +..|+..+..+..                                                
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence            257888999999875553 5666554433210                                                


Q ss_pred             --------------CCCcEEEEEeCCCCCC----CC---C----CCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524          113 --------------SDVIIVLVGNKTDLVE----KR---Q----VSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus       113 --------------~~~~~iiv~nk~D~~~----~~---~----~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                                    -++|++||.+|+|...    +.   +    ...+..+.+|-.+|+.++.+|++...+++.++.+|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                          0489999999999642    11   1    123346777888999999999999999999999987


Q ss_pred             HHHh
Q 030524          168 SLIT  171 (175)
Q Consensus       168 ~~~~  171 (175)
                      ..+.
T Consensus       261 h~l~  264 (472)
T PF05783_consen  261 HRLY  264 (472)
T ss_pred             HHhc
Confidence            7653

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.46  E-value=1.2e-12  Score=91.42  Aligned_cols=150  Identities=20%  Similarity=0.243  Sum_probs=86.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCC------------cccc----cceeeEEEEEEE------------------
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN------------TYQA----TIGIDFLSKTMY------------------   52 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~------------~~~~----~~~~~~~~~~~~------------------   52 (175)
                      .....|.++|++|+|||||+++++......            ..+.    ..+..  .....                  
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l~~gcic~~~~~~~~~~l~~   97 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQINTGKECHLDAHMVAHALED   97 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEEcCCCcccCChHHHHHHHHH
Confidence            346789999999999999999987641100            0000    00000  00000                  


Q ss_pred             ECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        53 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      .......+.+.|+.|.-...   ..+....+..+.|+|+.+.+...  ... ...     ...|.++++||+|+.+....
T Consensus        98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~  166 (207)
T TIGR00073        98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGF  166 (207)
T ss_pred             hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchh
Confidence            00012356778887721100   11112345556788877553211  111 111     23567899999998654333


Q ss_pred             CHHHHHHHHHhcC--CeEEEeccCCCCCHHHHHHHHHHH
Q 030524          133 SIEEGEAKSRELN--VMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       133 ~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      ...+.....++.+  ++++++|+++|.|++++|+++.+.
T Consensus       167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3344444444444  799999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.45  E-value=9.6e-13  Score=95.43  Aligned_cols=140  Identities=14%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcc----------cccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---cc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LI   75 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~   75 (175)
                      .++|+++|.+|+|||||+|.|++.......          ..+..+......+.-++..+.+.++||||......   .|
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999986543221          12233444444555677888999999999432111   00


Q ss_pred             c---cc---------------------ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524           76 P---SY---------------------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        76 ~---~~---------------------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                      .   .|                     =...|+++|+++.+.. ++..+.   .+.++.....+++|.|+.|+|.....+
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D---i~~mk~Ls~~vNvIPvIaKaD~lt~~e  159 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD---IEFMKRLSKRVNVIPVIAKADTLTPEE  159 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH---HHHHHHHTTTSEEEEEESTGGGS-HHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH---HHHHHHhcccccEEeEEecccccCHHH
Confidence            0   00                     0257999999997643 122211   122333335688999999999643221


Q ss_pred             --CCHHHHHHHHHhcCCeEEEec
Q 030524          132 --VSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       132 --~~~~~~~~~~~~~~~~~~~~s  152 (175)
                        .........+..++++++...
T Consensus       160 l~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  160 LQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHcCceeeccc
Confidence              123334445566777665543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.44  E-value=7.1e-13  Score=109.05  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=78.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC----------------CcccccceeeEEEEEEEE--------------CCeE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYL--------------EDRT   57 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~~~   57 (175)
                      +-.+|+++|+.++|||||+++|+...-.                .+.....++.........              ++..
T Consensus        18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (843)
T PLN00116         18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE   97 (843)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence            4579999999999999999999864310                011111112211111211              2235


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      +.+.++|||||.+|.......+..+|++|+|+|+..+-..+....| ....   ..++|.++++||+|..
T Consensus        98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence            6789999999999999888888999999999999866433322222 2222   2478999999999975

>PTZ00416 elongation factor 2; Provisional

Probab=99.43  E-value=9.2e-13  Score=108.23  Aligned_cols=116  Identities=18%  Similarity=0.236  Sum_probs=77.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC--C--------------CcccccceeeEEEEEEEEC--------CeEEEEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D--------------NTYQATIGIDFLSKTMYLE--------DRTVRLQLW   63 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~   63 (175)
                      .-.+|+++|+.++|||||+++|+...-  .              .+.....++.........+        +....+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            346999999999999999999986321  0              0011111111111122222        225679999


Q ss_pred             eCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      ||||+.+|.......+..+|++|+|+|+.++-..+. ...+..+..   .++|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence            999999998888888899999999999987533322 222233322   468999999999975

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.41  E-value=3.4e-12  Score=94.23  Aligned_cols=104  Identities=14%  Similarity=0.070  Sum_probs=65.7

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CH
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI  134 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~  134 (175)
                      ++.+.|+||+|-..-..   .....+|.++++.+...++.++....   .+..     ..-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence            46789999999652221   24667999999976444544444332   2222     222788899998643211  11


Q ss_pred             HHHHHHHHh-------cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          135 EEGEAKSRE-------LNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       135 ~~~~~~~~~-------~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      .+.+.....       +..+++.+|+.++.|++++++.+.+...
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            222222221       2258999999999999999999887654

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.41  E-value=1e-11  Score=83.63  Aligned_cols=150  Identities=22%  Similarity=0.150  Sum_probs=90.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEE---------------EEEE--------------------C
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK---------------TMYL--------------------E   54 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~--------------------~   54 (175)
                      ++|.+.|++|||||+|+.+++..-...-.....+.+.+..               .+..                    .
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~   93 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD   93 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence            7999999999999999999775321111111111111110               0000                    0


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI  134 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~  134 (175)
                      .....+.|++.+|+   ....-.+.-..+.-|+|+|.+..+-.  -++-...+      -..-++|+||.|+.+....+.
T Consensus        94 ~~~~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~~--P~K~gP~i------~~aDllVInK~DLa~~v~~dl  162 (202)
T COG0378          94 FPDLDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGEDI--PRKGGPGI------FKADLLVINKTDLAPYVGADL  162 (202)
T ss_pred             CCcCCEEEEecCcc---eecccCcchhhceEEEEEECCCCCCC--cccCCCce------eEeeEEEEehHHhHHHhCccH
Confidence            01135666666661   11111122233477888888765311  01000001      113478889999988888887


Q ss_pred             HHHHHHHHhcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          135 EEGEAKSRELN--VMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       135 ~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      +...+-+++.+  .+++++|.++|+|+++++.++....
T Consensus       163 evm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         163 EVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            88888887765  6999999999999999999987654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.41  E-value=5.3e-14  Score=99.72  Aligned_cols=112  Identities=21%  Similarity=0.111  Sum_probs=60.2

Q ss_pred             EEEEEeCCCcccccccccccc--------cCCcEEEEEEECCChhh-HHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524           59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~  129 (175)
                      .+.++|||||.++...+...-        ...-++++++|.....+ ...+..++..+.....-+.|.+.++||+|+..+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999987666544332        34557888898763322 222334444444333357999999999998652


Q ss_pred             C----------------------CCCHHHHHHHHHhcC-C-eEEEeccCCCCCHHHHHHHHHHHH
Q 030524          130 R----------------------QVSIEEGEAKSRELN-V-MFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       130 ~----------------------~~~~~~~~~~~~~~~-~-~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      .                      .............++ . +++.+|+.+++++.+++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            1                      000001111111223 3 799999999999999999876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.40  E-value=6.9e-12  Score=94.24  Aligned_cols=86  Identities=19%  Similarity=0.133  Sum_probs=56.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF   71 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   71 (175)
                      ...++|+++|.||+|||||+|+|.+........+..+.+.....+.+...               ..++.++|+||-..-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            34689999999999999999999887654333344433433333333322               235899999994321


Q ss_pred             c----c---cccccccCCcEEEEEEECC
Q 030524           72 R----S---LIPSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        72 ~----~---~~~~~~~~~d~~i~v~d~~   92 (175)
                      .    .   ..-..++++|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    1   1122367899999999973

>cd01882 BMS1 Bms1

Probab=99.39  E-value=9.7e-12  Score=87.78  Aligned_cols=139  Identities=12%  Similarity=0.119  Sum_probs=80.4

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ...+..|+++|++|+|||||++.+++...........+ +   ..+.. .....+.++||||+-  ... ....+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~---i~i~~-~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P---ITVVT-GKKRRLTFIECPNDI--NAM-IDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c---EEEEe-cCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence            34567899999999999999999987532211111111 1   11111 234568999999853  222 2336789999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCCC---HHHHHH-HHHh--cCCeEEEeccCCC
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEKRQVS---IEEGEA-KSRE--LNVMFIETSAKAG  156 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nk~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~s~~~~  156 (175)
                      ++++|++....... ...+..+. .  .+.|. ++++||.|+.+.....   ....+. +..+  .+.+++.+||+++
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~-~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQ-V--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHH-H--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence            99999875433222 22222222 2  34674 4589999986432211   111111 2222  2358999998875

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=3.3e-12  Score=91.85  Aligned_cols=164  Identities=18%  Similarity=0.157  Sum_probs=107.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeE------------------EEEEEEEC------CeEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDF------------------LSKTMYLE------DRTVR   59 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~------------------~~~~~~~~------~~~~~   59 (175)
                      ...++|.++|+...|||||...|.+--   ..++.....++..                  +...-.+.      .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            457999999999999999999987631   1111111111110                  00111111      12357


Q ss_pred             EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 030524           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG  137 (175)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~  137 (175)
                      +.|.|+|||+.....+-.-..-.|+.++|++++.+-.-...++++..+...  .-..++++-||.|+....+.  +.++.
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence            899999999876655554455579999999998664433455555555443  23557888899999754322  33445


Q ss_pred             HHHHHh---cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          138 EAKSRE---LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       138 ~~~~~~---~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++|.+.   .+.|++++||..+.|++-+++.|.+.|-.
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            555543   25799999999999999999999887753

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.38  E-value=5.5e-12  Score=93.91  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=75.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCccccccee---eEEEEEEEECCeEEEEEEEeCCCccccccccccc-----c
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I   79 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~   79 (175)
                      .+++|+|+|.+|+|||||+|.|.+-...++.....++   +............ .+.+||.||-+.-......|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            4689999999999999999999874333222222111   1112222222211 48999999965433333333     4


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC-------CCCCCCHHH----HHHHHH----hc
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-------EKRQVSIEE----GEAKSR----EL  144 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~-------~~~~~~~~~----~~~~~~----~~  144 (175)
                      .+.|.+|++.+    +.|.....++-.-...  .++|+++|-||+|..       .++....++    .++-+.    +.
T Consensus       113 ~~yD~fiii~s----~rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISS----ERFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEES----SS--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeC----CCCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            57798888776    3354443333322222  478999999999951       112222222    222222    22


Q ss_pred             CC---eEEEeccCCCC--CHHHHHHHHHHHH
Q 030524          145 NV---MFIETSAKAGF--NIKLCCHTLNSLI  170 (175)
Q Consensus       145 ~~---~~~~~s~~~~~--~v~~~f~~l~~~~  170 (175)
                      ++   ++|-+|+++-.  +...+-+.|.+.+
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL  217 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL  217 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence            43   78999988743  4555555555443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=6.5e-12  Score=98.78  Aligned_cols=164  Identities=19%  Similarity=0.182  Sum_probs=104.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccce----eeEEEEEE--------EECC----eEEEEEEEeCCCc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG----IDFLSKTM--------YLED----RTVRLQLWDTAGQ   68 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~----~~~~~~i~D~~G~   68 (175)
                      .+.++.-|+++|+..+|||-|++.+.+..+........+    -+++...-        .-++    ..=-+.++|||||
T Consensus       471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh  550 (1064)
T KOG1144|consen  471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH  550 (1064)
T ss_pred             hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence            345678899999999999999999988655433333222    22222210        0001    1113789999999


Q ss_pred             ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CC------------CCCCHH
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-EK------------RQVSIE  135 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~-~~------------~~~~~~  135 (175)
                      +.|..+.......||.+|+|+|+-.+-  +.  ..++.+.....++.|+|+++||+|.. ..            .....+
T Consensus       551 EsFtnlRsrgsslC~~aIlvvdImhGl--ep--qtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  551 ESFTNLRSRGSSLCDLAILVVDIMHGL--EP--QTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhhhhhccccccceEEEEeehhccC--Cc--chhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            999999999999999999999998541  11  11112222223689999999999952 10            000111


Q ss_pred             HHHHH-----------HHh-c-------------CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          136 EGEAK-----------SRE-L-------------NVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       136 ~~~~~-----------~~~-~-------------~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ....|           +.. +             .+.++++||.+|+|+-+|..+|++....
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence            11111           110 0             1368999999999999999998876543

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.36  E-value=3.3e-11  Score=90.14  Aligned_cols=155  Identities=16%  Similarity=0.207  Sum_probs=94.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCccc--------------ccce-------eeE---EEEEEEE-CCeEEEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--------------ATIG-------IDF---LSKTMYL-EDRTVRLQL   62 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~-------~~~---~~~~~~~-~~~~~~~~i   62 (175)
                      -.+-|+++|+.++|||||+++|.+.-+-++..              +..+       .-+   ...++.. ++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            35889999999999999999999872211111              1111       111   2333333 345568999


Q ss_pred             EeCCCcccccc-------c----------------------cccccc-CCcEEEEEE-ECC----ChhhH-HhHHHHHHH
Q 030524           63 WDTAGQERFRS-------L----------------------IPSYIR-DSSVAVVVY-DVA----SRQSF-LNTSKWIDE  106 (175)
Q Consensus        63 ~D~~G~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~----~~~~~-~~~~~~~~~  106 (175)
                      +||+|...-..       .                      ++..+. ++|+.|+|. |.+    .++.+ +.-.+++.+
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99999321110       0                      223344 889999988 654    12223 234556566


Q ss_pred             HHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC--CCCHHHHHHHHH
Q 030524          107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKLCCHTLN  167 (175)
Q Consensus       107 ~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~v~~~f~~l~  167 (175)
                      +..   .++|+++++|+.|-..  .........+...++++++.+|+.+  -+.+..++..++
T Consensus       176 Lk~---~~kPfiivlN~~dp~~--~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       176 LKE---LNKPFIILLNSTHPYH--PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHh---cCCCEEEEEECcCCCC--chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence            554   5899999999999321  1234445566677888877777654  445666665544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.36  E-value=2.4e-12  Score=104.70  Aligned_cols=116  Identities=20%  Similarity=0.179  Sum_probs=76.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC--C---------cccc-----cceeeEEEE--EEEECCeEEEEEEEeCCCcc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--N---------TYQA-----TIGIDFLSK--TMYLEDRTVRLQLWDTAGQE   69 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~--~---------~~~~-----~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~   69 (175)
                      +-.+|+++|+.++|||||+++|+...-.  .         ++.+     ..++.....  .+..++....+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            3468999999999999999999863211  0         0000     111111111  12234456789999999999


Q ss_pred             cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      +|.......+..+|++|+|+|+..+...+ ....+.....   .+.|.++++||+|..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhh
Confidence            99888888899999999999987653322 2222222222   246778999999975

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.36  E-value=3.3e-12  Score=87.83  Aligned_cols=160  Identities=22%  Similarity=0.307  Sum_probs=96.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----cccccccC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRD   81 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~   81 (175)
                      ..-||+++|.+||||||+-.-+..+... +......+++..-.....-| ...+.+||++|++.+..     .-...+.+
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            3568999999999999998776654422 33344444444333332222 24689999999885443     34567889


Q ss_pred             CcEEEEEEECCChhhHHhH---HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHh----cCCeEEEec
Q 030524           82 SSVAVVVYDVASRQSFLNT---SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRE----LNVMFIETS  152 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~iiv~nk~D~~~~--~~~~~~~~~~~~~~----~~~~~~~~s  152 (175)
                      .+++|+|||++.++--..+   +.-++.+.++. +...+....+|.|+...  ++....+.......    .++..+++|
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            9999999999977533333   33344444444 56777778899998643  22223333322222    334666666


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 030524          153 AKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~  170 (175)
                      .++ +.+...+..+....
T Consensus       161 iwD-etl~KAWS~iv~~l  177 (295)
T KOG3886|consen  161 IWD-ETLYKAWSSIVYNL  177 (295)
T ss_pred             hhh-HHHHHHHHHHHHhh
Confidence            553 33444444444433

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.35  E-value=2.4e-11  Score=88.98  Aligned_cols=146  Identities=14%  Similarity=0.166  Sum_probs=91.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCc----------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---c
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---L   74 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~   74 (175)
                      ..++|+++|+.|+||||++|.|++.....+          ..++..+......+.-++..+.+.++||||..++..   .
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            369999999999999999999998743322          223333455555555677788999999999543221   1


Q ss_pred             cc-----------ccc--------------cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-
Q 030524           75 IP-----------SYI--------------RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-  128 (175)
Q Consensus        75 ~~-----------~~~--------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~-  128 (175)
                      |.           .|+              ...|+++|.+..+.. ++..+.   .+++......+-+|.|+.|+|... 
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D---Ie~Mk~ls~~vNlIPVI~KaD~lT~  177 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD---IEAMKRLSKRVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH---HHHHHHHhcccCeeeeeeccccCCH
Confidence            11           111              157999999986532 333322   122222224577888889999643 


Q ss_pred             -CCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          129 -KRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                       +...-.....+....+++++|.  +.+.+.-
T Consensus       178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~  207 (373)
T COG5019         178 DELAEFKERIREDLEQYNIPVFD--PYDPEDD  207 (373)
T ss_pred             HHHHHHHHHHHHHHHHhCCceeC--CCCcccc
Confidence             2222344556667778888776  4555543

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.34  E-value=5.8e-12  Score=88.85  Aligned_cols=115  Identities=18%  Similarity=0.146  Sum_probs=68.9

Q ss_pred             eEEEEEEEeCCCccc-cccccccc-----cc--CCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524           56 RTVRLQLWDTAGQER-FRSLIPSY-----IR--DSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~-~~~~~~~~-----~~--~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~  124 (175)
                      ....+.++||||+-+ |.+.....     +.  ...+++++.|...   +.+|  +...+-.....++-.+|.+++.||+
T Consensus       114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp~ivvfNK~  191 (366)
T KOG1532|consen  114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLPFIVVFNKT  191 (366)
T ss_pred             cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCCeEEEEecc
Confidence            345689999999743 33322211     12  3467777887642   3333  3344444555555789999999999


Q ss_pred             CCCCCCCC----CHHH-HHHHHH-------------------h--cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          125 DLVEKRQV----SIEE-GEAKSR-------------------E--LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       125 D~~~~~~~----~~~~-~~~~~~-------------------~--~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      |+....-.    ..-+ .++...                   +  .++..+-||+.+|.|..++|..+-+.+-+
T Consensus       192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            98642100    0000 000000                   0  14678999999999999999988776543

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.34  E-value=4.4e-11  Score=89.01  Aligned_cols=83  Identities=17%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR--   72 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~--   72 (175)
                      ++|+++|.||+|||||+|++.+........+..+.+.....+.+.+.               ...+.+.|+||-..-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987644332233333333323333221               1358999999943211  


Q ss_pred             --c---cccccccCCcEEEEEEECC
Q 030524           73 --S---LIPSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        73 --~---~~~~~~~~~d~~i~v~d~~   92 (175)
                        .   ..-..++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              1   1122357899999999984

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.34  E-value=3.7e-11  Score=88.49  Aligned_cols=117  Identities=17%  Similarity=0.240  Sum_probs=83.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh----------hHHhHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ----------SFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D  125 (175)
                      ...+.++|++||..-+.-|-+++.+++++|||.++++.+          .+.+..+.++.+..+.. .+.++++++||.|
T Consensus       194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D  273 (354)
T KOG0082|consen  194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD  273 (354)
T ss_pred             CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence            367999999999988999999999999999999998432          34444455555555544 6899999999999


Q ss_pred             CCCC---------------CCCCHHHHHHHHH--------hc--CCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          126 LVEK---------------RQVSIEEGEAKSR--------EL--NVMFIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       126 ~~~~---------------~~~~~~~~~~~~~--------~~--~~~~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      +.++               -....+++..+..        ..  .+-...+.|.+..+|+.+|+.+.+.+...
T Consensus       274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            8532               1122233322222        11  23456668899999999999988887653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.34  E-value=4.7e-12  Score=96.61  Aligned_cols=161  Identities=20%  Similarity=0.357  Sum_probs=127.0

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      .+...+|+.++|..++|||+|+++++.+.+.....+..  ..+.+++.+++....+.+.|.+|+..     ..|....|+
T Consensus        26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda   98 (749)
T KOG0705|consen   26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA   98 (749)
T ss_pred             cccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence            34567999999999999999999999888776644444  35677777888888889999888443     446677999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIK  160 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~  160 (175)
                      +||||.+.+..+|+.+..+...+..+.. ..+|+++++++.-..  ..+....++.++++..+ .+.+|+.++..|.++.
T Consensus        99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~  178 (749)
T KOG0705|consen   99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVE  178 (749)
T ss_pred             eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHH
Confidence            9999999999999999988887776654 578888887765542  34555666666665555 5799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ..|..+..++..
T Consensus       179 rvf~~~~~k~i~  190 (749)
T KOG0705|consen  179 RVFQEVAQKIVQ  190 (749)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887754

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=5.4e-11  Score=86.58  Aligned_cols=158  Identities=23%  Similarity=0.202  Sum_probs=92.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC----Cccc---ccceeeEEEEEEE-------ECCeEEEEEEEeCCCcccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD----NTYQ---ATIGIDFLSKTMY-------LEDRTVRLQLWDTAGQERFRS   73 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~----~~~~---~~~~~~~~~~~~~-------~~~~~~~~~i~D~~G~~~~~~   73 (175)
                      ..+++.++|+..||||+|.+++..-...    .+..   ...+.+..-....       -.+..+.+.+.|+|||..   
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---   82 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---   82 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence            3499999999999999999998653211    1111   1122222111111       145567899999999764   


Q ss_pred             ccccccc---CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--C-HHHHHHHHHhc---
Q 030524           74 LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S-IEEGEAKSREL---  144 (175)
Q Consensus        74 ~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~-~~~~~~~~~~~---  144 (175)
                      +++..+.   -.|..++|+|+.....-+...-+  .+-..  -....++|+||.|...+.+.  . ....++..+.+   
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            4444444   45888999998755322222111  11111  23456777788886544221  1 12222222222   


Q ss_pred             ----CCeEEEeccCCC----CCHHHHHHHHHHHHhh
Q 030524          145 ----NVMFIETSAKAG----FNIKLCCHTLNSLITV  172 (175)
Q Consensus       145 ----~~~~~~~s~~~~----~~v~~~f~~l~~~~~~  172 (175)
                          +.|++++|+..|    +.+.++...|.+.+..
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence                369999999999    6777777766666543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.31  E-value=2.8e-11  Score=88.96  Aligned_cols=103  Identities=17%  Similarity=0.057  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHH
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE  136 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~  136 (175)
                      ++.+.|+||+|-....   ......+|.++++-..   ++-+++......+     .++|.++++||+|+..........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4678999999854211   2345667888888543   3334444443333     246778999999986433211000


Q ss_pred             ------HHHHHH---hcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          137 ------GEAKSR---ELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       137 ------~~~~~~---~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                            ...+..   .++.+++.+|++++.|+.++++++.+..
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence                  011111   1234689999999999999999988753

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.30  E-value=1.1e-11  Score=83.55  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=42.7

Q ss_pred             EEEEEeCCCcc----cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524           59 RLQLWDTAGQE----RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (175)
Q Consensus        59 ~~~i~D~~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~  124 (175)
                      .+.|+|+||-.    .....+..++..+|++|+|.+.++..+-.....+.+.....   ....++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            48999999953    33456788889999999999998865544444443333332   33388888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=1.4e-11  Score=87.65  Aligned_cols=146  Identities=18%  Similarity=0.166  Sum_probs=100.1

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcC---C-------CC----CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYD---K-------FD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~---~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      ...+.+|..+|+.+.|||||.-.+..-   .       +.    .......++++....+..+-....+...|+|||.+|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            456799999999999999998776431   1       00    111234556666666666555667899999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHhcCC-
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELNV-  146 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~~---~~~~~~~~~~~~~-  146 (175)
                      -..+-.-..+.|+.|+|.++++..-    ....++++....-++| +++++||+|+.++.+..   ..+.+.+...++. 
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpm----PqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~  164 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPM----PQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCC----CcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence            9888777889999999999998632    2222333333334565 67778999998643332   4456777777764 


Q ss_pred             ----eEEEeccCC
Q 030524          147 ----MFIETSAKA  155 (175)
Q Consensus       147 ----~~~~~s~~~  155 (175)
                          |++.-|+..
T Consensus       165 gd~~Pii~gSal~  177 (394)
T COG0050         165 GDDTPIIRGSALK  177 (394)
T ss_pred             CCCcceeechhhh
Confidence                677777654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.29  E-value=8.3e-11  Score=92.59  Aligned_cols=119  Identities=12%  Similarity=0.142  Sum_probs=74.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------c---ccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------S---LIP   76 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~---~~~   76 (175)
                      -+++|+++|.+|+||||++|.+++.... .......+..........++  ..+.++||||..+..       .   .+.
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            3579999999999999999999997643 22221222222222233343  568999999954321       1   122


Q ss_pred             cccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 030524           77 SYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVE  128 (175)
Q Consensus        77 ~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiv~nk~D~~~  128 (175)
                      .++.  .+|++++|..++......+-..++..+...++..  ..+||+.|+.|..+
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            2333  4799999998764333223335566666666522  44788889999764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=6.9e-11  Score=94.67  Aligned_cols=119  Identities=22%  Similarity=0.210  Sum_probs=85.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCC----C------------cccccceeeEEEEEEEECCe-EEEEEEEeCCCc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----N------------TYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQ   68 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~   68 (175)
                      ..+-.+|.++|+-.+|||||.++++...-.    .            ......+++.....+.+.-. .+.+.++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            446689999999999999999998753110    0            01112344555444444333 478999999999


Q ss_pred             ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      -+|......-++-+|++++|+|+...-..+.-.-|.+...    .++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence            9999999999999999999999986644444444433332    4799999999999643

>cd01900 YchF YchF subfamily

Probab=99.25  E-value=8.8e-11  Score=84.70  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=52.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc----
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR----   72 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~----   72 (175)
                      |+++|.||+|||||+|++.+........+..+.+.....+.+.+.               ...+.++|+||-..-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999997764333343333433333333332               2358999999943211    


Q ss_pred             cc---ccccccCCcEEEEEEECC
Q 030524           73 SL---IPSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        73 ~~---~~~~~~~~d~~i~v~d~~   92 (175)
                      .+   .-..++++|+++.|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            11   122356899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1.2e-10  Score=87.07  Aligned_cols=154  Identities=21%  Similarity=0.152  Sum_probs=104.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      -|+..|+-..|||||+..+.+..   ..+......+.+..-.....++.  .+.|+|.||++++-+.+-.-+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            47788999999999999988753   23344444555555555444443  78999999999998888878889999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc---CCeEEEeccCCCCCHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL---NVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~  164 (175)
                      |++.++.-.-+ ..+.+ .+....+ ....++++||+|..++. ......++.....   +.+++.+|+.+|+|++++.+
T Consensus        80 vV~~deGl~~q-tgEhL-~iLdllg-i~~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQ-TGEHL-LILDLLG-IKNGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchh-hHHHH-HHHHhcC-CCceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            99986542211 12222 2223322 23347888999986543 1122222222222   35889999999999999999


Q ss_pred             HHHHHH
Q 030524          165 TLNSLI  170 (175)
Q Consensus       165 ~l~~~~  170 (175)
                      .|....
T Consensus       156 ~l~~L~  161 (447)
T COG3276         156 ELIDLL  161 (447)
T ss_pred             HHHHhh
Confidence            998876

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=2.6e-10  Score=84.17  Aligned_cols=142  Identities=15%  Similarity=0.186  Sum_probs=86.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCc---------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---cc-
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LI-   75 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~-   75 (175)
                      .++++++|+.|.|||||+|.|+......+         ...+..+......+.-+|-.+.+++.||||..+...   .| 
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            49999999999999999999988744322         122333444444445567788899999999432211   11 


Q ss_pred             ---------------------ccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--C
Q 030524           76 ---------------------PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--R  130 (175)
Q Consensus        76 ---------------------~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~--~  130 (175)
                                           +.-+.  ..|+++|.+..+.. ++..+.   ..+.......+.+|.|+.|+|....  .
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D---i~~Mk~l~~~vNiIPVI~KaD~lT~~El  176 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD---IEFMKKLSKKVNLIPVIAKADTLTKDEL  176 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh---HHHHHHHhccccccceeeccccCCHHHH
Confidence                                 11122  67999999986532 222222   2223333356778888899996432  2


Q ss_pred             CCCHHHHHHHHHhcCCeEEEeccC
Q 030524          131 QVSIEEGEAKSRELNVMFIETSAK  154 (175)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~~  154 (175)
                      ..-...+.+.+..++++++....-
T Consensus       177 ~~~K~~I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  177 NQFKKRIRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             HHHHHHHHHHHHHcCcceecCCCC
Confidence            222334455566677776665444

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.22  E-value=7e-11  Score=85.32  Aligned_cols=56  Identities=23%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             CcEEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       115 ~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      .+-++++||+|+.+......+...+..+..  ..+++.+|+++|+|++++.+||.+..
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            455888999998653333344444444443  46999999999999999999998754

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=1.6e-10  Score=80.24  Aligned_cols=151  Identities=13%  Similarity=0.153  Sum_probs=86.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCC---------cccccceeeEEEEEEEECCeEEEEEEEeCCCccccc---cccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---SLIP   76 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~~~~   76 (175)
                      .++|+++|.+|.|||||+|++.......         ....|..+......+.-++-..++.++||||..++.   ..|.
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            5899999999999999999987654322         112223333334444456667889999999944322   1222


Q ss_pred             cc-----------------------cc--CCcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCC--C
Q 030524           77 SY-----------------------IR--DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLV--E  128 (175)
Q Consensus        77 ~~-----------------------~~--~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~--~  128 (175)
                      ..                       ++  ..|+++|.+..+.. +++.+. ..++.+.    .-+-++.|+.|.|..  +
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt----~vvNvvPVIakaDtlTle  200 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT----EVVNVVPVIAKADTLTLE  200 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh----hhheeeeeEeecccccHH
Confidence            11                       11  56899999887632 333322 2223332    235567777899942  2


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      ++..=.+..++-...+++.+++-.+.+-+.-+...+
T Consensus       201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN  236 (336)
T KOG1547|consen  201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN  236 (336)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence            222223334444556777777766655443333333

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.20  E-value=1.6e-10  Score=82.75  Aligned_cols=105  Identities=16%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI  134 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~  134 (175)
                      .-++.+.|++|.|-..-...   ...-+|.+++|--..-.+..+.++.-+.++-.        ++++||.|.......-.
T Consensus       141 AaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A~~a~r  209 (323)
T COG1703         141 AAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGAEKAAR  209 (323)
T ss_pred             hcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhHHHHHH
Confidence            34567889999874432222   33458999888876666667777665555543        78889999532211100


Q ss_pred             --HHHHHHH----HhcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          135 --EEGEAKS----RELN--VMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       135 --~~~~~~~----~~~~--~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                        ..+..+.    .+.+  .+++.+|+..|+|+.++++.+.+..
T Consensus       210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence              1111111    1223  3899999999999999999987654

>smart00053 DYNc Dynamin, GTPase

Probab=99.19  E-value=3.6e-10  Score=80.07  Aligned_cols=68  Identities=21%  Similarity=0.259  Sum_probs=42.1

Q ss_pred             EEEEEEeCCCccc-------------ccccccccccCC-cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeC
Q 030524           58 VRLQLWDTAGQER-------------FRSLIPSYIRDS-SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (175)
Q Consensus        58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk  123 (175)
                      ..+.++|+||...             ...+...|+++. +++++|.|+.....-+........+   .+.+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence            4689999999532             112456677754 5888899876432211212222222   2257899999999


Q ss_pred             CCCCC
Q 030524          124 TDLVE  128 (175)
Q Consensus       124 ~D~~~  128 (175)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.18  E-value=2e-11  Score=86.02  Aligned_cols=151  Identities=15%  Similarity=0.128  Sum_probs=85.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC-----------CCccccc---------------ceeeEEEEEEEE--------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-----------DNTYQAT---------------IGIDFLSKTMYL--------   53 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~--------   53 (175)
                      +...|.+.|+||+|||||++.|.....           .+....+               .....+....-.        
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            568999999999999999998754211           0000000               001111111111        


Q ss_pred             ----------CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeC
Q 030524           54 ----------EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (175)
Q Consensus        54 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk  123 (175)
                                +.-++.+.|++|.|-..-...   ...-+|.+++|....-.+..+.++.-+.++..        ++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence                      112356888899873322222   24458999999988777777777765555533        788899


Q ss_pred             CCCCCCCCCCHHHHHHHHH---h----cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          124 TDLVEKRQVSIEEGEAKSR---E----LNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~---~----~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      +|...... ...+.+....   .    +..|++.+||.++.|+.++++.+.+..
T Consensus       177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            99532211 1122222222   1    234899999999999999999887643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=3.5e-10  Score=84.61  Aligned_cols=116  Identities=22%  Similarity=0.259  Sum_probs=83.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC--------C----CC--------cccccceeeEEEEEEEECCeEEEEEEEeCC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--------F----DN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--------~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (175)
                      .++...+++-+|.+|||||...|+.-.        +    ..        +.....++...+...+.+.....+.+.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            456789999999999999999986411        0    00        011134555666666677677889999999


Q ss_pred             CcccccccccccccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      ||++|..-+=.-+-.+|.+++|+|+..+  ++. ..++++-++ .  +++|++-++||.|..
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcr-l--R~iPI~TFiNKlDR~  146 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCR-L--RDIPIFTFINKLDRE  146 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHh-h--cCCceEEEeeccccc
Confidence            9999988776667789999999998754  333 233333332 2  689999999999953

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=2.2e-10  Score=79.68  Aligned_cols=162  Identities=14%  Similarity=0.134  Sum_probs=101.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc---ccccccCCcEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSSVAV   86 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d~~i   86 (175)
                      .+|+++|...+||||+..-..++..+.+.....+... ...-.+.+.-+.+.+||.||+-.+..-   ....++++.++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            5699999999999999887766544332211111010 111112335578999999998665542   345678999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCC-CCCCCCHH-----HHHHHHHhcC-----CeEEEecc
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV-EKRQVSIE-----EGEAKSRELN-----VMFIETSA  153 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~-~~~~~~~~-----~~~~~~~~~~-----~~~~~~s~  153 (175)
                      ||+|+.+ +-.+.+.++...+....+  +++.+-+++.|.|-. ++..+..+     +...-....|     +.|+.+|.
T Consensus       107 fvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            9999864 445556666666666554  778888889999942 22211111     1111111222     36777776


Q ss_pred             CCCCCHHHHHHHHHHHHhhhh
Q 030524          154 KAGFNIKLCCHTLNSLITVCI  174 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~~~~  174 (175)
                      .+. ++.|.|..+.+++.+..
T Consensus       186 yDH-SIfEAFSkvVQkLipqL  205 (347)
T KOG3887|consen  186 YDH-SIFEAFSKVVQKLIPQL  205 (347)
T ss_pred             cch-HHHHHHHHHHHHHhhhc
Confidence            654 59999999999887654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=3.3e-10  Score=88.59  Aligned_cols=115  Identities=21%  Similarity=0.231  Sum_probs=82.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccc-----------------cceeeEEEEEE---EECCeEEEEEEEeCCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------TIGIDFLSKTM---YLEDRTVRLQLWDTAG   67 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~D~~G   67 (175)
                      ...+++++|+-++|||+|++.|..+.-+.-...                 ..++......+   ..+++.+.+.+.||||
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG  206 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG  206 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence            458999999999999999999887643221111                 11111222222   2366778899999999


Q ss_pred             cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (175)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~  126 (175)
                      |-.|...+..-+..+|++++++|+...-.+.. .+.+.+...   .+.|+++|+||.|.
T Consensus       207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NRLPIVVVINKVDR  261 (971)
T ss_pred             cccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---ccCcEEEEEehhHH
Confidence            99999999999999999999999976644432 333333322   57999999999995

>PRK12289 GTPase RsgA; Reviewed

Probab=99.09  E-value=1.4e-09  Score=81.23  Aligned_cols=92  Identities=16%  Similarity=0.225  Sum_probs=67.7

Q ss_pred             ccccccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Q 030524           73 SLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET  151 (175)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (175)
                      .+.+..+.++|.+++|+|+.++. ....+.+|+.....   .++|+++|+||+|+....+  ..........++++++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            45556688999999999998775 44456777665522   5799999999999864322  122223334678899999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 030524          152 SAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~  169 (175)
                      |+.++.|+++++..+...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999988654

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.08  E-value=2.2e-08  Score=70.27  Aligned_cols=101  Identities=14%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR   80 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~   80 (175)
                      ..-+++++|-|.+|||||+..+.............+.+...-.+..++  ..+++.|.||--+-       ....-...+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence            457999999999999999999887554322222222333333333444  56899999993211       112334467


Q ss_pred             CCcEEEEEEECCChhhHHh-HHHHHHHHHHh
Q 030524           81 DSSVAVVVYDVASRQSFLN-TSKWIDEVRTE  110 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~  110 (175)
                      .+|.+++|.|++..+.-+. +.+.++.+-..
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiR  169 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIR  169 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhcee
Confidence            8999999999997654443 56666665443

>cd01855 YqeH YqeH

Probab=99.07  E-value=1.1e-09  Score=75.53  Aligned_cols=93  Identities=25%  Similarity=0.303  Sum_probs=65.1

Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcC
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELN  145 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~  145 (175)
                      +...+..+++++|++++|+|++++..-     |...+... ..+.|+++|+||+|+..... .......+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            577888899999999999999875321     12222222 24689999999999864322 233333333     2233


Q ss_pred             C---eEEEeccCCCCCHHHHHHHHHHHH
Q 030524          146 V---MFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       146 ~---~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      .   .++.+|+++|+|+++++..+.+.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3   689999999999999999998765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.07  E-value=5.6e-09  Score=79.60  Aligned_cols=113  Identities=17%  Similarity=0.211  Sum_probs=80.6

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCC
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDL  126 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~  126 (175)
                      ..+.++|++|+...+.-|.+++.+++++|||+++++-          ..+.+.-..++.+..... .+.|+++++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            5689999999999999999999999999999998732          235554555555555433 68999999999996


Q ss_pred             CCC----------------C--CCCHHHHHHHHHh------------cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          127 VEK----------------R--QVSIEEGEAKSRE------------LNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       127 ~~~----------------~--~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ..+                .  ..+.+.+..+...            ..+.+..++|.+.+++..+|+.+.+.|
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            321                1  1334455444432            123467889999999999999887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.5e-08  Score=74.96  Aligned_cols=84  Identities=17%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE------------C--C--eEEEEEEEeCCCcccc-
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL------------E--D--RTVRLQLWDTAGQERF-   71 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~--~--~~~~~~i~D~~G~~~~-   71 (175)
                      .+++.++|.||+|||||.|.+..........|-.+++...-...+            .  .  ....+.++|.+|.-.- 
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987655322332222222111111            1  1  1346899999983211 


Q ss_pred             ---cc---cccccccCCcEEEEEEECC
Q 030524           72 ---RS---LIPSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        72 ---~~---~~~~~~~~~d~~i~v~d~~   92 (175)
                         +.   ..-.-++++|+++-|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               11   2223367899999999887

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.04  E-value=3.3e-10  Score=81.81  Aligned_cols=153  Identities=15%  Similarity=0.120  Sum_probs=95.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPS   77 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~   77 (175)
                      .....|.++|-+|+|||||++.|.+-...+...-..+.+........++.. .+.+.||.|.-.         |+. +-.
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A-TLe  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA-TLE  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence            345679999999999999999999765554444444444444444454443 588999999321         111 122


Q ss_pred             cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCc----EEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEec
Q 030524           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVI----IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~----~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (175)
                      -+..+|.++=|.|+++|.--+... -....++..+ +..|    ++=|-||.|..+....        ...++  -+.+|
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e-~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~is  322 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRE-TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGIS  322 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHH-HHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--ccccc
Confidence            356899999999999985433322 2233333332 2233    3445577776432211        11122  46799


Q ss_pred             cCCCCCHHHHHHHHHHHHhh
Q 030524          153 AKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +.+|+|++++.+.+-.+...
T Consensus       323 altgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccCccHHHHHHHHHHHhhh
Confidence            99999999998887666543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.04  E-value=1.5e-09  Score=79.39  Aligned_cols=87  Identities=16%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             ccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524           77 SYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (175)
                      ..+.++|.+++|+|+.++. ++..+.+|+..+..   .++|+++|+||+|+.++.+  ...........+.+++.+|+++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~  148 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT  148 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence            3478999999999999887 88888888776654   4689999999999864311  1222333445788999999999


Q ss_pred             CCCHHHHHHHHHH
Q 030524          156 GFNIKLCCHTLNS  168 (175)
Q Consensus       156 ~~~v~~~f~~l~~  168 (175)
                      +.|+++++..|..
T Consensus       149 g~gi~~L~~~L~~  161 (287)
T cd01854         149 GEGLDELREYLKG  161 (287)
T ss_pred             CccHHHHHhhhcc
Confidence            9999999988754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01859 MJ1464 MJ1464

Probab=99.02  E-value=8.4e-10  Score=73.62  Aligned_cols=93  Identities=23%  Similarity=0.263  Sum_probs=63.3

Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET  151 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (175)
                      +.++++.+.++|++++|+|++++..... ..+ .....  ..+.|+++++||+|+.+...  ......+....+.+++.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l-~~~~~--~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i   76 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKL-ERYVL--ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYV   76 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHH-HHHHH--hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEE
Confidence            4566777888999999999987643222 111 11111  14689999999999853211  111112334456789999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 030524          152 SAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~~  170 (175)
                      |++++.|++++++.+.+.+
T Consensus        77 Sa~~~~gi~~L~~~l~~~~   95 (156)
T cd01859          77 SAKERLGTKILRRTIKELA   95 (156)
T ss_pred             EccccccHHHHHHHHHHHH
Confidence            9999999999999988765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.01  E-value=1.9e-09  Score=79.17  Aligned_cols=86  Identities=20%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             ccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (175)
                      +.++|.+++|+|+.+++.... +.+|+..+..   .++|+++|+||+|+.+..+ ............+++++.+|+++++
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            489999999999988865544 4667665543   4789999999999853221 1223344455678899999999999


Q ss_pred             CHHHHHHHHHH
Q 030524          158 NIKLCCHTLNS  168 (175)
Q Consensus       158 ~v~~~f~~l~~  168 (175)
                      |+++++..+..
T Consensus       154 gi~~L~~~l~g  164 (298)
T PRK00098        154 GLDELKPLLAG  164 (298)
T ss_pred             cHHHHHhhccC
Confidence            99999988753

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=2e-09  Score=78.38  Aligned_cols=147  Identities=19%  Similarity=0.167  Sum_probs=98.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcC----------CCC----CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYD----------KFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (175)
                      .+..+++|.-+|+...|||||.-.+..-          .+.    .......++++....+..+-....+.=.|+|||.+
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            3456799999999999999998776431          111    11122455666666665555556778889999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHhcC-
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN-  145 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~---~~~~~~~~~~~~~~-  145 (175)
                      |-..+-.-..+.|+.|+|+.++|..- ...+   ++++...--+++ +++++||.|+.++.+   .-+-+.+++..+++ 
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~M-PQTr---EHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGPM-PQTR---EHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCCC-cchH---HHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence            99988888889999999999998732 2223   333333323444 667789999874322   22445677777776 


Q ss_pred             ----CeEEEeccCC
Q 030524          146 ----VMFIETSAKA  155 (175)
Q Consensus       146 ----~~~~~~s~~~  155 (175)
                          +|++.-||..
T Consensus       206 ~Gd~~PvI~GSAL~  219 (449)
T KOG0460|consen  206 DGDNTPVIRGSALC  219 (449)
T ss_pred             CCCCCCeeecchhh
Confidence                4787776654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.97  E-value=1.8e-09  Score=70.88  Aligned_cols=54  Identities=28%  Similarity=0.355  Sum_probs=38.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      +++++|.+|+|||||+|++++..... .....+.+.....+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876532 122222333444444544   4799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.97  E-value=5.3e-09  Score=78.14  Aligned_cols=88  Identities=17%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHhcCCeEEEeccCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAGF  157 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~  157 (175)
                      ..|+|.+++|++.....++..+.+|+.....   .++|+++|+||+|+.+..+. ............+++++.+|+++++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999877889899999775432   46899999999999643211 1122233344568899999999999


Q ss_pred             CHHHHHHHHHHH
Q 030524          158 NIKLCCHTLNSL  169 (175)
Q Consensus       158 ~v~~~f~~l~~~  169 (175)
                      |+++++..|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999998754

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.92  E-value=3.5e-09  Score=78.27  Aligned_cols=157  Identities=16%  Similarity=0.161  Sum_probs=95.0

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccc----------------eeeEEEEEE------E-----------
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI----------------GIDFLSKTM------Y-----------   52 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~~~------~-----------   52 (175)
                      .+.++.+...|+.+.|||||...|.-+......-.+.                .+.+...-+      .           
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            4567999999999999999999887665543322211                111111100      0           


Q ss_pred             --ECCeEEEEEEEeCCCcccccccc--cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           53 --LEDRTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        53 --~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                        ++...--+.+.|+.||+.|....  -.+-.+.|..+++..+++.-+  .+.+  +++-.....+.|++++.||+|+.+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tk--EHLgi~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTK--EHLGIALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhh--HhhhhhhhhcCCEEEEEEecccCc
Confidence              11122347899999999877533  223346899999999987632  3322  223223335899999999999864


Q ss_pred             CCCC------------------------CHHHHHHHHHhcC---CeEEEeccCCCCCHHHHHHHH
Q 030524          129 KRQV------------------------SIEEGEAKSRELN---VMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus       129 ~~~~------------------------~~~~~~~~~~~~~---~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +...                        +.......+.+.+   +|++.+|+.+|+|++-+-..+
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            3110                        1110011111122   499999999999987655444

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.89  E-value=9.7e-09  Score=77.38  Aligned_cols=95  Identities=26%  Similarity=0.344  Sum_probs=69.8

Q ss_pred             cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHH----HHHHh
Q 030524           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSRE  143 (175)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~----~~~~~  143 (175)
                      .++|..+...+.+.++++++|+|+.+..     ..|...+.... .+.|+++|+||+|+.+. ........    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            5678888888889999999999997653     22344444443 36799999999998643 33333333    34566


Q ss_pred             cCC---eEEEeccCCCCCHHHHHHHHHHH
Q 030524          144 LNV---MFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       144 ~~~---~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      .++   .++.+||++|.|++++|..+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01858 NGP_1 NGP-1

Probab=98.88  E-value=7.7e-09  Score=69.06  Aligned_cols=56  Identities=27%  Similarity=0.335  Sum_probs=36.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      ..++|+++|.||+|||||+|++.+...... .+..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            457899999999999999999998654322 11122222222222222   378999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.87  E-value=9e-09  Score=69.67  Aligned_cols=54  Identities=20%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      .++++++|.||+|||||+|++.+.... ....+  +.+.....+..+.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~p--g~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATP--GVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCC--CeEcceEEEEeCC---CEEEEECcC
Confidence            489999999999999999999986543 22222  2333333333332   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.7e-08  Score=80.10  Aligned_cols=120  Identities=23%  Similarity=0.195  Sum_probs=83.0

Q ss_pred             CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCC------------C--CcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------D--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      .+++...-.+|.++.+...|||||.+.|+...-            .  -+...+.+++.....+..--+.+.+.++|+||
T Consensus         2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg   81 (887)
T KOG0467|consen    2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG   81 (887)
T ss_pred             CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence            456677778999999999999999999876321            0  01122334444444443434567899999999


Q ss_pred             cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                      |-+|.+.......=+|++++++|+..+--.+...-    +++....+...++++||+|
T Consensus        82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKID  135 (887)
T ss_pred             ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhh
Confidence            99999999888888999999999875432222111    1211224677888999999

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.79  E-value=8e-09  Score=71.65  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=85.1

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~  124 (175)
                      ..+.+.+.|.+|+..-+.-|-+++.+...++|+..++          |...+++...++..+..+-. .+.++|+++||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            3456889999999888889999999999888887665          34456666667776666544 789999999999


Q ss_pred             CCCCC----------------CCCCHHHHHHHHHhc----C------CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          125 DLVEK----------------RQVSIEEGEAKSREL----N------VMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       125 D~~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      |+.++                .+.+...+++|+-..    |      +--..+.|.+.+|+.-+|..+...+..
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            98542                344455556665433    1      112456678899999999988777654

>cd01856 YlqF YlqF

Probab=98.79  E-value=2.7e-08  Score=67.42  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=38.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      ..++++++|.+|+|||||+|++.+...... ....+.+........+   ..+.++||||-
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            457999999999999999999998765321 2222223333334443   35789999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=7.6e-08  Score=74.74  Aligned_cols=138  Identities=10%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      ..+.++-++++||||.|||||+..|+.+........     .......+.++...+++.++|.  +. +.+-...+-+|.
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~-----i~GPiTvvsgK~RRiTflEcp~--Dl-~~miDvaKIaDL  136 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDE-----IRGPITVVSGKTRRITFLECPS--DL-HQMIDVAKIADL  136 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhc-----cCCceEEeecceeEEEEEeChH--HH-HHHHhHHHhhhe
Confidence            345678888999999999999999887532211111     1112223567778999999993  22 233344677999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCCHHHHHHHHHh-------cCCeEEEeccCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKA  155 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~  155 (175)
                      +++++|.+-.  |+.-...+..+...++  .| ++-|+|..|+... +......+.-.++       .|+++|.+|...
T Consensus       137 VlLlIdgnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~-~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         137 VLLLIDGNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKN-PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eEEEeccccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccC-hHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            9999998644  5443333344454443  44 5556799998532 2222222222221       167888887654

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.77  E-value=4.9e-08  Score=68.91  Aligned_cols=73  Identities=19%  Similarity=0.297  Sum_probs=56.4

Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHhHHHHHHHHHHhcC-CCCcEEEEEeC
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTERG-SDVIIVLVGNK  123 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk  123 (175)
                      -..+.|+.+|.+|+.+-+.-|-.++....++|||...+.          ...+++.-.+++.+..+.. ..+.+|+++||
T Consensus       199 Vdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNK  278 (379)
T KOG0099|consen  199 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNK  278 (379)
T ss_pred             ccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecH
Confidence            344679999999999989999999999999999998773          2344554455555555544 57889999999


Q ss_pred             CCCC
Q 030524          124 TDLV  127 (175)
Q Consensus       124 ~D~~  127 (175)
                      .|+.
T Consensus       279 qDll  282 (379)
T KOG0099|consen  279 QDLL  282 (379)
T ss_pred             HHHH
Confidence            9974

>cd01858 NGP_1 NGP-1

Probab=98.77  E-value=3.5e-08  Score=65.88  Aligned_cols=87  Identities=18%  Similarity=0.198  Sum_probs=56.4

Q ss_pred             ccCCcEEEEEEECCChhh--HHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524           79 IRDSSVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (175)
                      ++++|++++|.|+.++..  ...+.+++.    ....+.|+++++||+|+.++.. .......+...+....+.+|++.+
T Consensus         6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~----~~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           6 IDSSDVVIQVLDARDPMGTRCKHVEEYLK----KEKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             hhhCCEEEEEEECCCCccccCHHHHHHHH----hccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeecccc
Confidence            678999999999988732  222333322    2234689999999999854321 111122222222233578999999


Q ss_pred             CCHHHHHHHHHHHH
Q 030524          157 FNIKLCCHTLNSLI  170 (175)
Q Consensus       157 ~~v~~~f~~l~~~~  170 (175)
                      .|++++.+.+.+..
T Consensus        81 ~~~~~L~~~l~~~~   94 (157)
T cd01858          81 FGKGSLIQLLRQFS   94 (157)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.77  E-value=6.7e-08  Score=82.65  Aligned_cols=112  Identities=22%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCcc----ccc--ceeeEEEEEEEECCeEEEEEEEeCCCc----c----cccccccc
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQ----E----RFRSLIPS   77 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~----~----~~~~~~~~   77 (175)
                      .+++|++|+||||++..- +..++-..    ..+  .+-+.. ..+.+.+   ...++|++|.    +    .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            478999999999999874 43332111    111  111111 2222333   3569999992    1    22234554


Q ss_pred             ccc---------CCcEEEEEEECCC-----hh----hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           78 YIR---------DSSVAVVVYDVAS-----RQ----SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        78 ~~~---------~~d~~i~v~d~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      ++.         -.|++|+++|+.+     ++    .-+.++..+.++....+...||+++.||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            432         4799999999873     21    123577788888888889999999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.77  E-value=1.3e-08  Score=72.31  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=90.7

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc-cceeeEEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSL   74 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~   74 (175)
                      +..+.+++++|-+|+|||||+|.++.......... ..+.+.......+   .-.+.+.|.||.          .++..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHh
Confidence            45678999999999999999999988654433222 2322222222222   236789999992          234445


Q ss_pred             ccccccCCc---EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC------CC-----HHHHHHH
Q 030524           75 IPSYIRDSS---VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ------VS-----IEEGEAK  140 (175)
Q Consensus        75 ~~~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~------~~-----~~~~~~~  140 (175)
                      ...|+.+-+   .++++.|++-+  ++.......++..  ..++|..+|.||+|..-...      ..     .....+.
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~g--e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLG--ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHh--hcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            566665543   34555666533  2332222122222  25899999999999632111      00     1111111


Q ss_pred             HHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524          141 SRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       141 ~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      ......+++.+|+.++.|.+++..-+.+.
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhhh
Confidence            11223478889999999999887665543

>cd01855 YqeH YqeH

Probab=98.76  E-value=2e-08  Score=69.20  Aligned_cols=56  Identities=21%  Similarity=0.316  Sum_probs=37.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCC-------cccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      ..+++++|.+|+|||||+|.|++.....       ......+.+........+.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            4689999999999999999999854321       1111122333334444433   479999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.75  E-value=4.5e-08  Score=65.25  Aligned_cols=56  Identities=23%  Similarity=0.269  Sum_probs=38.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      ...+++++|.+|+||||++|++.++.. ....++.+.+........++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            457899999999999999999997542 23334444333333222333   589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.74  E-value=5.7e-08  Score=71.14  Aligned_cols=56  Identities=23%  Similarity=0.349  Sum_probs=39.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      ..++++++|.||+|||||+|+|.+.... ....+.  .+.....+..+.   .+.++||||-
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g--~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPG--VTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCC--eEEEEEEEEeCC---cEEEEECCCc
Confidence            4589999999999999999999987643 222332  233333344433   4789999994

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=4.8e-08  Score=72.27  Aligned_cols=155  Identities=18%  Similarity=0.292  Sum_probs=93.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccc-----------------------cceeeEEEEEEE----------EC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------------TIGIDFLSKTMY----------LE   54 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~----------~~   54 (175)
                      ..++++++|...+|||||+.-|..+........                       ..+++.....+.          ++
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            468999999999999999998876654322111                       111111111111          11


Q ss_pred             CeEEEEEEEeCCCccccccccccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---  129 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~---  129 (175)
                      ...-.+.++|.+|+.+|....-+-+.  ..|...+|+++...-.. ..++.+-.+.   .-++|+.++.+|+|+...   
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~---AL~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIA---ALNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHH---HhCCCeEEEEEeeccccchhH
Confidence            22235889999999998875543333  35788888887654221 1233332222   258999999999999643   


Q ss_pred             ---------------------CCCCHHHHHHHHHh----cCCeEEEeccCCCCCHHHHHHHH
Q 030524          130 ---------------------RQVSIEEGEAKSRE----LNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus       130 ---------------------~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                                           +.-+.+++-..+.+    .-.|++.+|+.+|+|++-+-..|
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence                                 11123333222222    22489999999999987655443

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=3.3e-07  Score=64.49  Aligned_cols=159  Identities=16%  Similarity=0.155  Sum_probs=102.1

Q ss_pred             eeEEEECCCCC--CHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524           10 YKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus        10 ~~i~l~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++++|..|+  ||.+|+.+|..-.+.....+.....++.+++........+.++=.+--+++.--......-..++++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            46788999999  9999999998877766655555556666554333333334444333212222222222334468899


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--------------------------------------
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--------------------------------------  129 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~--------------------------------------  129 (175)
                      +||++...++..++.|+.....+.-  -..+.++||.|.++.                                      
T Consensus        85 vfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl  162 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL  162 (418)
T ss_pred             EEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence            9999999999999999886654321  123455799996531                                      


Q ss_pred             ------CCCCHHHHHHHHHhcCCeEEEeccCCC------------CCHHHHHHHHHHHH
Q 030524          130 ------RQVSIEEGEAKSRELNVMFIETSAKAG------------FNIKLCCHTLNSLI  170 (175)
Q Consensus       130 ------~~~~~~~~~~~~~~~~~~~~~~s~~~~------------~~v~~~f~~l~~~~  170 (175)
                            .-........|+.++|+.|++.++.+.            .|++.+|..|...+
T Consensus       163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                  001234456778888999999988543            36888887765443

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.72  E-value=5.5e-08  Score=70.85  Aligned_cols=57  Identities=26%  Similarity=0.352  Sum_probs=38.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      ..++++++|.||+|||||+|+|.+....... ...+.+.....+..+.   .+.++||||-
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            4589999999999999999999986543221 1122233333344433   4789999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.69  E-value=5.6e-08  Score=72.16  Aligned_cols=56  Identities=27%  Similarity=0.369  Sum_probs=42.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      ..++++++|-||+|||||||+|++..... ..+..+.+.....+.++..   +.++||||
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPG  186 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPG  186 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCC
Confidence            45889999999999999999999987532 2222355666666666553   79999999

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.67  E-value=1.8e-07  Score=62.34  Aligned_cols=83  Identities=19%  Similarity=0.100  Sum_probs=54.3

Q ss_pred             cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      |++++|+|+.++.+...  .++.. ......++|+++++||+|+.+..+. ......+....+..++.+|++++.|+.++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988765443  22221 1112257999999999998532210 01111232333567899999999999999


Q ss_pred             HHHHHHH
Q 030524          163 CHTLNSL  169 (175)
Q Consensus       163 f~~l~~~  169 (175)
                      .+.+.+.
T Consensus        77 ~~~i~~~   83 (155)
T cd01849          77 ESAFTKQ   83 (155)
T ss_pred             HHHHHHH
Confidence            9988764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=1.1e-07  Score=70.25  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=74.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCccccc-ceeeEEEEEEE------ECC-------------------------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT-IGIDFLSKTMY------LED-------------------------   55 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~------~~~-------------------------   55 (175)
                      .+.-|+++|+-..||||+++-|+.+.++.-.... .+.+++.....      ++|                         
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            4677999999999999999999998876433221 11222222111      011                         


Q ss_pred             -------e-EEEEEEEeCCCc--c---------cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc
Q 030524           56 -------R-TVRLQLWDTAGQ--E---------RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI  116 (175)
Q Consensus        56 -------~-~~~~~i~D~~G~--~---------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (175)
                             . --.+.++||||-  .         .|...++=+...+|.+|++||...-+--++..+-+..+   .+..-.
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~Edk  213 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGHEDK  213 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCCcce
Confidence                   1 125899999992  1         23334555678999999999975432222333333333   334556


Q ss_pred             EEEEEeCCCCCCCCC
Q 030524          117 IVLVGNKTDLVEKRQ  131 (175)
Q Consensus       117 ~iiv~nk~D~~~~~~  131 (175)
                      +-+|+||+|.++..+
T Consensus       214 iRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  214 IRVVLNKADQVDTQQ  228 (532)
T ss_pred             eEEEeccccccCHHH
Confidence            777789999765433

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5.9e-07  Score=70.98  Aligned_cols=144  Identities=24%  Similarity=0.302  Sum_probs=83.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCccc-ccc----------e------------------e---------eE---
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATI----------G------------------I---------DF---   46 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~-~~~----------~------------------~---------~~---   46 (175)
                      .+.||++.|..++||||++|+++..+.-++.. ++.          |                  +         +.   
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            46899999999999999999998765432211 110          0                  0         00   


Q ss_pred             --EEEEEEECCe-----EEEEEEEeCCCcc---cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc
Q 030524           47 --LSKTMYLEDR-----TVRLQLWDTAGQE---RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI  116 (175)
Q Consensus        47 --~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (175)
                        ..-.+..+.+     .-.+.+.|.||-+   +...-...+...+|++|||.++.+..+..+. .++.....   .+.-
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence              0000111111     1157889999943   3444556667899999999998776444332 22222221   2233


Q ss_pred             EEEEEeCCCCCCCCCCCHHHHHHHHHhcCC--------eEEEeccCC
Q 030524          117 IVLVGNKTDLVEKRQVSIEEGEAKSRELNV--------MFIETSAKA  155 (175)
Q Consensus       117 ~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~  155 (175)
                      +.++.||+|.....+..........+++.+        .++.||++.
T Consensus       264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            455568989876555555555555555542        478888553

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.61  E-value=6.4e-08  Score=64.33  Aligned_cols=59  Identities=27%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCc-cccc---ce--eeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNT-YQAT---IG--IDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      -.++++|++|||||||+|.|+....... ..+.   .+  .+.....+..++.   ..++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            4688999999999999999998632211 1110   00  1112223334332   378999995543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01856 YlqF YlqF

Probab=98.61  E-value=1.1e-07  Score=64.41  Aligned_cols=97  Identities=16%  Similarity=0.119  Sum_probs=62.1

Q ss_pred             CCcc-cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc
Q 030524           66 AGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL  144 (175)
Q Consensus        66 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~  144 (175)
                      |||. +........+.++|++++|+|++++..-... .    +.... .+.|+++++||+|+.++..  .....+.....
T Consensus         3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~   74 (171)
T cd01856           3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL-GNKPRIIVLNKADLADPKK--TKKWLKYFESK   74 (171)
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh-cCCCEEEEEehhhcCChHH--HHHHHHHHHhc
Confidence            4542 3334456678899999999999876432221 1    11111 3578999999999853211  11111222233


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          145 NVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       145 ~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      +..++.+|++++.|++++...+.+.+
T Consensus        75 ~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          75 GEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHH
Confidence            45789999999999999999887764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.60  E-value=2.1e-07  Score=62.00  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=36.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      ...+++++|.+|+|||||+|.+.+.... ....+..+.+..  ....+   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence            4688999999999999999999986532 222222222222  22232   2489999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=7.4e-08  Score=72.24  Aligned_cols=116  Identities=22%  Similarity=0.283  Sum_probs=90.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC--------CCCCc--------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      +-.+|.++.+-.+||||...+++.-        .+...        .....+++.++..+..+=++.++.++||||+-+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            3468999999999999999998752        11111        1224567788888878777888999999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      +-....+++--|+++.|||.+..-.-+.+..|.+.    .+-++|...++||+|..
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~  167 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKL  167 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhh
Confidence            99999999999999999999977555556666442    33578999999999964

>TIGR00092 GTP-binding protein YchF

Probab=98.58  E-value=2.3e-07  Score=69.53  Aligned_cols=83  Identities=14%  Similarity=0.051  Sum_probs=54.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR-   72 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-   72 (175)
                      ++++++|.|++|||||.+.+.+... .....+..+.+.....+.+.+.               ...+.+.|.||-..-. 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998776 4322232222333333333221               2367899999943211 


Q ss_pred             ------ccccccccCCcEEEEEEECC
Q 030524           73 ------SLIPSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        73 ------~~~~~~~~~~d~~i~v~d~~   92 (175)
                            ...-..++++|+++.|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                  12233467899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.57  E-value=2.2e-07  Score=60.92  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             ccccCCcEEEEEEECCChhhHH--hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccC
Q 030524           77 SYIRDSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK  154 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (175)
                      ..+.++|++++|+|+.++.+..  .+.+++...    ..+.|+++++||+|+.++..  .....+.....+..++.+|+.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            3467899999999998876543  233443322    24689999999999854322  223344555567889999999


Q ss_pred             CCCC
Q 030524          155 AGFN  158 (175)
Q Consensus       155 ~~~~  158 (175)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.56  E-value=1e-06  Score=65.29  Aligned_cols=143  Identities=17%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCC----------ccc-----------ccceeeEEEEEEE-------------E
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN----------TYQ-----------ATIGIDFLSKTMY-------------L   53 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~-------------~   53 (175)
                      ..-.|+++|++|+||||++..+...-...          .+.           ...++.+......             .
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            35678899999999999998875421100          000           0011122111000             0


Q ss_pred             CCeEEEEEEEeCCCcccccc----ccccc--------ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEE
Q 030524           54 EDRTVRLQLWDTAGQERFRS----LIPSY--------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVG  121 (175)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~----~~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~  121 (175)
                      ....+.+.++||||......    ....+        -...+..++|.|++..  .+.+.. ...+....   -+.-+|+
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~~---~~~giIl  266 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEAV---GLTGIIL  266 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhhC---CCCEEEE
Confidence            12345799999999543221    11111        1246788999998854  222222 12222211   2335677


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524          122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus       122 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      ||.|....    .-.+...+...++|+..++  .|++++++
T Consensus       267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            99995322    2355566677799998887  78887654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.55  E-value=2.7e-06  Score=64.30  Aligned_cols=154  Identities=19%  Similarity=0.216  Sum_probs=89.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCc--------------ccccce----------eeEEEEEEEE-CCeEEEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT--------------YQATIG----------IDFLSKTMYL-EDRTVRLQLW   63 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~----------~~~~~~~~~~-~~~~~~~~i~   63 (175)
                      .+=|.++||..+|||||+.||...-+-++              .++..+          +......+.+ ++-.+++++.
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            46689999999999999999865321110              111111          1112233444 4667899999


Q ss_pred             eCCCcc--------ccc--c-ccccc------------------cc-CC-cEEEEEEECC----ChhhHHhH-HHHHHHH
Q 030524           64 DTAGQE--------RFR--S-LIPSY------------------IR-DS-SVAVVVYDVA----SRQSFLNT-SKWIDEV  107 (175)
Q Consensus        64 D~~G~~--------~~~--~-~~~~~------------------~~-~~-d~~i~v~d~~----~~~~~~~~-~~~~~~~  107 (175)
                      ||.|.-        +-.  . ....+                  +. ++ =++++.=|-+    .++.|.+. .+-+.++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            999811        000  0 00111                  11 22 2555554433    24444443 3344444


Q ss_pred             HHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC--CCCHHHHHHHHH
Q 030524          108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKLCCHTLN  167 (175)
Q Consensus       108 ~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~v~~~f~~l~  167 (175)
                      ..   -++|+++++|-.+-  ..+.......++..+++++++.+++.+  .+.+..++..++
T Consensus       177 k~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  177 KE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            43   47999999998873  445556777888889999988887654  445555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.54  E-value=1.3e-07  Score=70.20  Aligned_cols=153  Identities=15%  Similarity=0.205  Sum_probs=86.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCC------------------cccccceeeEEEE-------------------
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN------------------TYQATIGIDFLSK-------------------   49 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~-------------------   49 (175)
                      -...+++++|+..+|||||+.-|.++....                  ...++.+.++...                   
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW  210 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW  210 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence            457899999999999999998876654322                  1122222222111                   


Q ss_pred             EEEECCeEEEEEEEeCCCcccccccccccc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           50 TMYLEDRTVRLQLWDTAGQERFRSLIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        50 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      ...+++..--+.|+|.+||++|....-.-.  .-.|...+++-++..  +-.+  ..+++.....-.+|+.+|.+|+|++
T Consensus       211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGm--TKEHLgLALaL~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGM--TKEHLGLALALHVPVFVVVTKIDMC  286 (641)
T ss_pred             eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceec--cHHhhhhhhhhcCcEEEEEEeeccC
Confidence            111223333578999999998876432211  124666666655432  1111  1122322333578888888999886


Q ss_pred             CCCCCC--HHHHHHHH--------------------------HhcCCeEEEeccCCCCCHHHHH
Q 030524          128 EKRQVS--IEEGEAKS--------------------------RELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       128 ~~~~~~--~~~~~~~~--------------------------~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      ......  .....++.                          .+.-||+|.+|-.+|+++.-+.
T Consensus       287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk  350 (641)
T KOG0463|consen  287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK  350 (641)
T ss_pred             cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence            532211  11112222                          2233689999999999987543

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=4.2e-07  Score=70.95  Aligned_cols=116  Identities=22%  Similarity=0.266  Sum_probs=81.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-C---------------cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-N---------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      +-.+|.+.-+-.+||||+-++.+...-- .               +.....+++.......+.-..+.+.++|||||-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            3467888999999999999997753211 0               11112344444444333333678999999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      .-.....++--|+.+++++...+-.-+....|.+. .+   -++|.+.++||+|..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR---YNVPRICFINKMDRM  169 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh---cCCCeEEEEehhhhc
Confidence            98888889999999999998766444444455432 22   379999999999963

>PRK14974 cell division protein FtsY; Provisional

Probab=98.52  E-value=8.5e-07  Score=66.05  Aligned_cols=95  Identities=13%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524           58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                      +.+.++||+|......    ..+.+  ..+.|..++|.|+.....  .+ .....+....  ++ --+++||.|....  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~-~~a~~f~~~~--~~-~giIlTKlD~~~~--  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AV-EQAREFNEAV--GI-DGVILTKVDADAK--  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HH-HHHHHHHhcC--CC-CEEEEeeecCCCC--
Confidence            4689999999543221    11222  236789999999875432  11 1112222211  22 3566799996332  


Q ss_pred             CCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524          132 VSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                        .-.+...+...+.|+..++  +|++++++-.
T Consensus       295 --~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        295 --GGAALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             --ccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence              2245555666788888886  7888876543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.52  E-value=4.6e-07  Score=66.04  Aligned_cols=98  Identities=23%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             CCcc-cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc
Q 030524           66 AGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL  144 (175)
Q Consensus        66 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~  144 (175)
                      |||. +........+.++|++++|+|+.++.+.+.  .++....    .+.|+++|+||+|+.+...  .....+.....
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence            5653 222345566889999999999987644332  1112222    2579999999999853211  11111122334


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          145 NVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       145 ~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +.+++.+|++++.|+.++.+.+.+.+.
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            568899999999999999888877654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.51  E-value=2.8e-07  Score=69.05  Aligned_cols=59  Identities=20%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCC-ccccc---ce--eeEEEEEEEECCeEEEEEEEeCCCccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQAT---IG--IDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~---~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (175)
                      .++|+|.+|+|||||+|+|++..... ...+.   .+  .+.....+.+++.   ..++||||-.++.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            37899999999999999999764321 11111   01  1222222333332   2599999965443

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.51  E-value=5.8e-07  Score=65.73  Aligned_cols=87  Identities=22%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC---------------eEEEEEEEeCCCccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQER   70 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~   70 (175)
                      ..+.++|.++|.|+|||||+.|.|......+...|-.+++.....+.+..               -...+.++|++|.-.
T Consensus        17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            34679999999999999999999999877666666665665555544422               134689999998432


Q ss_pred             ccc----c---ccccccCCcEEEEEEECC
Q 030524           71 FRS----L---IPSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        71 ~~~----~---~~~~~~~~d~~i~v~d~~   92 (175)
                      -.+    +   .-.-++.+|+++=|.++.
T Consensus        97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             CcccCcCchHHHHHhhhhccceeEEEEec
Confidence            211    1   122356789998887665

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.51  E-value=1.3e-05  Score=52.95  Aligned_cols=111  Identities=14%  Similarity=0.248  Sum_probs=63.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCC-Cccc--------------cc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER--------------FR   72 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~--------------~~   72 (175)
                      ..++|++.|+|||||||++.++...-.... ....  -+.+.++.-++...-|.+.|.. |...              |.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG-YKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC-ceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            468999999999999999998764321211 1111  3455566667777778888887 4221              11


Q ss_pred             c-----------cccccccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524           73 S-----------LIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        73 ~-----------~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                      .           ..+..++.+|++|+  |=--  .++. .+.+.+.+......+.|++..+.+.+
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvIII--DEIG--pMElks~~f~~~ve~vl~~~kpliatlHrrs  141 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVIII--DEIG--PMELKSKKFREAVEEVLKSGKPLIATLHRRS  141 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEEE--eccc--chhhccHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            0           11122334565553  4221  2222 34444555555556788888776665

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.50  E-value=9.6e-07  Score=62.38  Aligned_cols=85  Identities=16%  Similarity=0.094  Sum_probs=48.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC--CCCCccc-ccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccc------cccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQ-ATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIPS   77 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~~~   77 (175)
                      +-.-|.++|++++|||+|+|+|++.  .+..... ...+........... +....+.++||+|......      ....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            4467889999999999999999998  4432211 111111111111111 2345799999999543222      1111


Q ss_pred             ccc--CCcEEEEEEECC
Q 030524           78 YIR--DSSVAVVVYDVA   92 (175)
Q Consensus        78 ~~~--~~d~~i~v~d~~   92 (175)
                      .+.  -++++|+..+..
T Consensus        86 ~l~~llss~~i~n~~~~  102 (224)
T cd01851          86 ALATLLSSVLIYNSWET  102 (224)
T ss_pred             HHHHHHhCEEEEeccCc
Confidence            122  378888876655

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.50  E-value=5.3e-07  Score=64.36  Aligned_cols=116  Identities=16%  Similarity=0.294  Sum_probs=72.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCC----cccccceeeEEEEEEEECCeEEEEEEEeCCCccc-------ccc----
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRS----   73 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~----   73 (175)
                      .++|+-+|.+|-|||||++.|....+..    ...+........+...-.|-.+++.+.||.|..+       |..    
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            5899999999999999999999876543    3344444444555555567788999999999321       111    


Q ss_pred             ---cccccc---------------cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           74 ---LIPSYI---------------RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        74 ---~~~~~~---------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                         ....|+               ...++++|.+..+.. ++..+.-   .........+-+|.++.|.|...
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDL---vtmk~LdskVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDL---VTMKKLDSKVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHH---HHHHHHhhhhhhHHHHHHhhhhh
Confidence               111111               256888888887643 3333222   12222224566666778888643

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.49  E-value=9.7e-07  Score=59.01  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +++.|+.|+|||||+++++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            678999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.48  E-value=2.5e-06  Score=66.31  Aligned_cols=82  Identities=18%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             EEEEEeCCC-------------cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 030524           59 RLQLWDTAG-------------QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKT  124 (175)
Q Consensus        59 ~~~i~D~~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~  124 (175)
                      ...+.|.||             .+....+..+|..|.+++|+|+--.   |.+.-+.....+-... +.+...|+|+||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            578899999             2344456788899999999998422   2233233333333333 2567789999999


Q ss_pred             CCCCCCCCCHHHHHHHHHh
Q 030524          125 DLVEKRQVSIEEGEAKSRE  143 (175)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~  143 (175)
                      |+.+..-.+.+.+++....
T Consensus       490 DlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             chhhhccCCHHHHHHHHhc
Confidence            9988878888888777653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.47  E-value=9.8e-07  Score=64.07  Aligned_cols=95  Identities=15%  Similarity=0.025  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCCcccccccc----cc---c-----ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524           57 TVRLQLWDTAGQERFRSLI----PS---Y-----IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~  124 (175)
                      .+.+.++||||........    ..   .     -..+|..++|.|++..  .+.+. ....+....   -+--+|+||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEcc
Confidence            3678999999964322211    11   1     1238999999999743  22222 223333222   1346677999


Q ss_pred             CCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524          125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      |....    .-.....+...++|+..++  +|++++++-
T Consensus       228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            96332    2245555666788888887  777776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.44  E-value=1.3e-06  Score=65.85  Aligned_cols=83  Identities=17%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF  157 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  157 (175)
                      ..|+|.+++|.++..+.....+.+++.....   .+++.++|+||+|+.+...   .....+.. ..+++++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence            5789999999999644444445555544443   4678888999999965311   11222222 356799999999999


Q ss_pred             CHHHHHHHHH
Q 030524          158 NIKLCCHTLN  167 (175)
Q Consensus       158 ~v~~~f~~l~  167 (175)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888874

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=6.8e-08  Score=69.68  Aligned_cols=163  Identities=18%  Similarity=0.189  Sum_probs=97.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC---CCCccccccee-------------------------------e-EEEEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGI-------------------------------D-FLSKTM   51 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~-------------------------------~-~~~~~~   51 (175)
                      .-.++|.-+|+.-.||||++..+.+-.   +..+.....++                               + ..+...
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            457999999999999999998765421   00000000000                               0 000000


Q ss_pred             EECC---eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           52 YLED---RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        52 ~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      ...+   -...+.|.|+|||+-....+-.-..-.|+.++++..+..-.-....+++-.+...  .=..++++-||.|+..
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli~  193 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLIK  193 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhhh
Confidence            1111   1245789999999866554444444568999998876432111222222222222  1245788889999976


Q ss_pred             CCCCCH--HHHHHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          129 KRQVSI--EEGEAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       129 ~~~~~~--~~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +.+...  +....|...-   +.|++++||.-+.|++-+.+++..++-
T Consensus       194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            544332  2334444433   569999999999999999999888764

>PRK12289 GTPase RsgA; Reviewed

Probab=98.41  E-value=5.9e-07  Score=67.36  Aligned_cols=23  Identities=39%  Similarity=0.561  Sum_probs=20.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++|+|++|+|||||+|.|++..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc
Confidence            37999999999999999999754

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.41  E-value=2.3e-06  Score=57.74  Aligned_cols=135  Identities=17%  Similarity=0.228  Sum_probs=70.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeC-CCcc---------------c----
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQE---------------R----   70 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~---------------~----   70 (175)
                      +|++.|+||+|||||+.+++..-... ..+..+  +++....-++...-|.+.|. .|..               +    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987532111 122222  33444444555666677776 3311               1    


Q ss_pred             ---cccccccc----ccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 030524           71 ---FRSLIPSY----IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR  142 (175)
Q Consensus        71 ---~~~~~~~~----~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~  142 (175)
                         +.......    +.++|  ++++|=-  ..++. ...|.+.+......+.|++.++-+..       .....+.+.+
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEI--G~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEI--GKMELKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE-----STTCCC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEecc--chhhhcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHh
Confidence               11111111    13455  5566521  11222 34455555555556788888876662       1124566777


Q ss_pred             hcCCeEEEeccCCCCCH
Q 030524          143 ELNVMFIETSAKAGFNI  159 (175)
Q Consensus       143 ~~~~~~~~~s~~~~~~v  159 (175)
                      +.++.+++++..+.+.+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            77899999988776655

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13796 GTPase YqeH; Provisional

Probab=98.39  E-value=2.5e-06  Score=64.54  Aligned_cols=92  Identities=26%  Similarity=0.384  Sum_probs=60.9

Q ss_pred             cccccccccccCCc-EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHH----HHHHhc
Q 030524           70 RFRSLIPSYIRDSS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSREL  144 (175)
Q Consensus        70 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~----~~~~~~  144 (175)
                      .|....+.. ...+ .+++|+|+.+..     ..|...+.... .+.|+++|+||+|+.+. .....+..    .+++..
T Consensus        58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            455544443 4445 889999987642     22333444333 26789999999999642 23333333    335556


Q ss_pred             CC---eEEEeccCCCCCHHHHHHHHHHH
Q 030524          145 NV---MFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       145 ~~---~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      ++   .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            66   58999999999999999998764

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.39  E-value=5e-06  Score=63.70  Aligned_cols=141  Identities=17%  Similarity=0.139  Sum_probs=74.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc------CCC----CCcccc-----------cceeeEEEEEEEEC-------------
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY------DKF----DNTYQA-----------TIGIDFLSKTMYLE-------------   54 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~------~~~----~~~~~~-----------~~~~~~~~~~~~~~-------------   54 (175)
                      +..|+++|++||||||++..|..      ...    ...+.+           ..+++++......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            56789999999999999998752      111    011110           11122221110000             


Q ss_pred             CeEEEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           55 DRTVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      ...+.+.|+||+|......    ....+  ..+.|-+++|.|+.-...-..   ....+...   --+--+|+||.|...
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGHA  253 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCCC
Confidence            1246789999999543222    11111  235788999999875422222   22222221   134567789999532


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                          ..-.+.......+.|+..++  .|+.+++
T Consensus       254 ----rgG~aLs~~~~t~~PI~fig--~Ge~v~D  280 (429)
T TIGR01425       254 ----KGGGALSAVAATKSPIIFIG--TGEHIDD  280 (429)
T ss_pred             ----CccHHhhhHHHHCCCeEEEc--CCCChhh
Confidence                12234555666677766663  3444443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.38  E-value=1.3e-06  Score=64.09  Aligned_cols=99  Identities=21%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             CCCccc-ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 030524           65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (175)
Q Consensus        65 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~  143 (175)
                      .|||.. -.......+.++|++++|+|+.++.+.+.  .++....    .+.|+++|+||+|+.+...  ......+..+
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            466532 22344566889999999999987644332  1222222    2689999999999853211  1112222234


Q ss_pred             cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          144 LNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       144 ~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      .+.+++.+|++.+.|+.++...+.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            4678899999999999999888776653

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.37  E-value=1.1e-06  Score=66.37  Aligned_cols=57  Identities=25%  Similarity=0.339  Sum_probs=35.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCC----cccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (175)
                      .++.++|.+|+|||||+|++++.....    ......+.+........++   .+.++||||-.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence            489999999999999999999853211    1111112222223333322   25799999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.35  E-value=9e-07  Score=66.95  Aligned_cols=56  Identities=23%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCc----ccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      .++.++|.+|+|||||+|+|++......    ..+..+.+.....+..++.   ..++||||-
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            4799999999999999999986431110    1111222333333334332   479999995

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.34  E-value=6.2e-07  Score=68.78  Aligned_cols=55  Identities=24%  Similarity=0.214  Sum_probs=39.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      .+.|++||-|||||||+||.|.+++.. ....|..+.++++..  +..   .+-++||||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--LSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--cCC---CceecCCCCc
Confidence            489999999999999999999998644 333444443333333  333   4789999993

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=1.9e-06  Score=72.82  Aligned_cols=111  Identities=21%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             EEECCCCCCHHHHHHHHhcCCCC-Cccccc---cee-eEEEEEEEECCeEEEEEEEeCCCc--------cccccccccc-
Q 030524           13 VFLGDQSVGKTSIITRFMYDKFD-NTYQAT---IGI-DFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSY-   78 (175)
Q Consensus        13 ~l~G~~~~GKSsli~~l~~~~~~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~-   78 (175)
                      +++|++|+||||++.. .+..++ ......   ... +..+. ..+.+   .-.++||+|.        +.....|..+ 
T Consensus       129 ~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         129 MVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             EEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            6899999999999864 222221 111111   111 12222 22222   3588999982        1223345444 


Q ss_pred             --------ccCCcEEEEEEECCC-----h----hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           79 --------IRDSSVAVVVYDVAS-----R----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        79 --------~~~~d~~i~v~d~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                              .+-.|++|+.+|+.+     +    .-...++..++++........||++++||.|+..
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                    235699999999873     1    1123366677888887788999999999999864

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.34  E-value=1.1e-06  Score=63.69  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=35.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCC------Ccc-cccceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFD------NTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (175)
                      ..+++|++|+|||||+|+|......      ... ...++ +.....+.+++.+   .++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHT-Tt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHT-TTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCc-cceEEEEEcCCCC---EEEeCCCCCccC
Confidence            5678999999999999999873211      111 11111 2233333443333   689999966544

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.33  E-value=1.4e-06  Score=62.33  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++++|++|+|||||+|+|++..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh
Confidence            468899999999999999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.30  E-value=7e-06  Score=61.93  Aligned_cols=140  Identities=13%  Similarity=0.075  Sum_probs=70.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC--C-cccccc--------------------eeeEEEEEEE-------ECCeEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD--N-TYQATI--------------------GIDFLSKTMY-------LEDRTV   58 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~--~-~~~~~~--------------------~~~~~~~~~~-------~~~~~~   58 (175)
                      .-.++++||+|+||||++..|......  . ......                    ++........       ..-...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            457889999999999999988653211  0 000001                    1111110000       001234


Q ss_pred             EEEEEeCCCccccccc----cccc--ccCCcEEEEEEECCCh-hhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCC
Q 030524           59 RLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK  129 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~  129 (175)
                      .+.++||+|.......    ...+  .....-.++|.+++.. +.+..+...+.........  .-+--+|.||.|... 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            6899999995533221    1111  1233456788888754 3333332222222110000  012345669999532 


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEec
Q 030524          130 RQVSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s  152 (175)
                         ..-.+...+...+.|+..++
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEe
Confidence               23356666677777666553

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=98.29  E-value=0.00013  Score=48.76  Aligned_cols=145  Identities=8%  Similarity=0.061  Sum_probs=104.6

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEe-CCCcccccccccccccC
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD-TAGQERFRSLIPSYIRD   81 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~G~~~~~~~~~~~~~~   81 (175)
                      .++..+...|+++|..+.++..|.+.++...-      +.  .            +++++-- .|-..+.    ...=+.
T Consensus         9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~~--~------------l~Vh~a~sLPLp~e~----~~lRpr   64 (176)
T PF11111_consen    9 KLPELNTATILLVGTEEALLQQLAEAMLEEDK------EF--K------------LKVHLAKSLPLPSEN----NNLRPR   64 (176)
T ss_pred             cCCCcceeEEEEecccHHHHHHHHHHHHhhcc------ce--e------------EEEEEeccCCCcccc----cCCCce
Confidence            46777899999999999999999999885210      01  0            1111111 1111111    111346


Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      .|.++|++|.....+++.++.-+..+...+-. -.++++++.....+...+..++..+++..+.+|++.+.-...++...
T Consensus        65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~  143 (176)
T PF11111_consen   65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS  143 (176)
T ss_pred             eEEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence            89999999999999999999888877655433 44666677777666678889999999999999999999888888887


Q ss_pred             HHHHHHHHHhh
Q 030524          162 CCHTLNSLITV  172 (175)
Q Consensus       162 ~f~~l~~~~~~  172 (175)
                      +-..|.+.+..
T Consensus       144 lAqRLL~~lqi  154 (176)
T PF11111_consen  144 LAQRLLRMLQI  154 (176)
T ss_pred             HHHHHHHHHHH
Confidence            77777776543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.28  E-value=1.2e-05  Score=58.49  Aligned_cols=96  Identities=17%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             ccccccccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI  149 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (175)
                      -..+.+.-+.+.|-.++++++.+|+ +...+.+++-....   .++..++++||+|+.++.+....+........+++.+
T Consensus        69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~  145 (301)
T COG1162          69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL  145 (301)
T ss_pred             cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence            3345555667889999999998885 44445555444333   4677778899999976554444456667777899999


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 030524          150 ETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~  169 (175)
                      .+|+++++++.++...+...
T Consensus       146 ~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         146 FVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             EecCcCcccHHHHHHHhcCC
Confidence            99999999999998887654

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=2.7e-06  Score=63.63  Aligned_cols=157  Identities=18%  Similarity=0.212  Sum_probs=92.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC-------------------CCccc----c------cceeeEEEEEEEECCeE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------DNTYQ----A------TIGIDFLSKTMYLEDRT   57 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-------------------~~~~~----~------~~~~~~~~~~~~~~~~~   57 (175)
                      ..++++.++|...+||||+-..++...-                   ...|.    .      ..+.+.......++-..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            4679999999999999999777654210                   00000    0      01111111122222333


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC--CCC
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE--KRQ  131 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~--~~~  131 (175)
                      .++.+.|+|||..|-..+-.-..++|..++|+++.-.   ..|+.-.+-.++...+.. .-...++++||+|-..  ...
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~  236 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN  236 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence            5799999999999888877778899999999987422   234432122222222221 3455677889999431  111


Q ss_pred             CC----HHHHHHHHHhcC------CeEEEeccCCCCCHHHHH
Q 030524          132 VS----IEEGEAKSRELN------VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       132 ~~----~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~f  163 (175)
                      .-    .+....+.+..|      ..|+++|..+|.++.+.-
T Consensus       237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            11    222333444333      469999999999988643

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.23  E-value=1.1e-05  Score=57.29  Aligned_cols=82  Identities=20%  Similarity=0.312  Sum_probs=51.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD   81 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   81 (175)
                      -++.++|-|.+||||++..+.+-..+ +.+..+. .....-.+..  ...++++.|.||--+       .....-...+.
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeftt-l~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTT-LTTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCcccccccee-EEEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeec
Confidence            48999999999999999998875433 2222222 1111111112  235689999998321       11122334567


Q ss_pred             CcEEEEEEECCCh
Q 030524           82 SSVAVVVYDVASR   94 (175)
Q Consensus        82 ~d~~i~v~d~~~~   94 (175)
                      |+.+++|.|+..|
T Consensus       137 cnli~~vld~~kp  149 (358)
T KOG1487|consen  137 CNLIFIVLDVLKP  149 (358)
T ss_pred             ccEEEEEeeccCc
Confidence            8999999998754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.22  E-value=3.4e-06  Score=61.82  Aligned_cols=59  Identities=24%  Similarity=0.194  Sum_probs=36.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcc-cc-----cceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY-QA-----TIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      -.++++|++|+|||||+|.|++....... .+     ....+.....+...+.   ..++||||..++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            57899999999999999999985432211 11     1111222233333322   268999997654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.19  E-value=4.8e-06  Score=61.39  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~   34 (175)
                      -.++++|++|+|||||+|.|++...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcC
Confidence            4688999999999999999987643

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.19  E-value=3.7e-05  Score=57.17  Aligned_cols=95  Identities=12%  Similarity=0.124  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCccccccccccccc--------CCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      ....++++.|-.+-......+..        ..+.+|.|+|+.+...... ......++. .+.     ++++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-~AD-----~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-YAD-----RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-hCC-----EEEEeccccCC
Confidence            45678899986544333333211        3488999999875422211 111112222 222     77789999865


Q ss_pred             CCCCCHHHHHHHHHhcC--CeEEEeccCCCCCHHHHH
Q 030524          129 KRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f  163 (175)
                      +.    +..+...+..+  ++++.++ ........+|
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            32    35555555554  4666554 2233444443

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.18  E-value=1.1e-05  Score=54.75  Aligned_cols=84  Identities=13%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             EEEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524           57 TVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~  130 (175)
                      ...+.+.|++|...+..    ....+  ....+.+++|+|......   ...+...+....+   ...++.||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence            34578899999642211    11111  134899999999865432   2233444433332   345667999964322


Q ss_pred             CCCHHHHHHHHHhcCCeEEE
Q 030524          131 QVSIEEGEAKSRELNVMFIE  150 (175)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~  150 (175)
                          ......+...++|+..
T Consensus       156 ----g~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 ----GAALSIRAVTGKPIKF  171 (173)
T ss_pred             ----chhhhhHHHHCcCeEe
Confidence                2233366666666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.15  E-value=2.7e-05  Score=57.79  Aligned_cols=144  Identities=22%  Similarity=0.229  Sum_probs=79.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCC------------ccc-----cc-----ceeeEEEEEEEEC-------------Ce
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKFDN------------TYQ-----AT-----IGIDFLSKTMYLE-------------DR   56 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~~~------------~~~-----~~-----~~~~~~~~~~~~~-------------~~   56 (175)
                      .++-|--|||||||++.++.+....            ..+     ..     ..+...+.-.+++             ..
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            4566999999999999998764300            000     00     0111111122211             12


Q ss_pred             EEEEEEEeCCCcccccccccccc--------cCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      .....++++.|-..-...+..+.        -..|++|-|+|+.+-..... +..........+.     ++++||.|+.
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD-----~ivlNK~Dlv  158 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD-----VIVLNKTDLV  158 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc-----EEEEecccCC
Confidence            24577888888443322222221        13588999999876533222 4444444444443     7888999998


Q ss_pred             CCCCCCHHHHHHHHHhcC--CeEEEeccCCCCCHHHHH
Q 030524          128 EKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f  163 (175)
                      .+..  ....+...++.+  ++++.++. .+.+..+++
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            7653  445555666655  47787776 334443433

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.12  E-value=1.7e-05  Score=54.87  Aligned_cols=138  Identities=17%  Similarity=0.154  Sum_probs=73.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCC----------cc-----------cccceeeEEEEEEE-------------ECC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDN----------TY-----------QATIGIDFLSKTMY-------------LED   55 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~----------~~-----------~~~~~~~~~~~~~~-------------~~~   55 (175)
                      -.|+++||+||||||.+-+|.......          .+           ....++.++.....             ...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            468999999999999988875421100          00           00112222211100             001


Q ss_pred             eEEEEEEEeCCCcccccc----cccccc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524           56 RTVRLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~  129 (175)
                      .++.+.++||+|...+..    .+..++  ...+-+++|.+++...  +.+. ....+....  ++. -++.||.|... 
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~--~~~-~lIlTKlDet~-  154 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF--GID-GLILTKLDETA-  154 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS--STC-EEEEESTTSSS-
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc--cCc-eEEEEeecCCC-
Confidence            124689999999543322    122221  1577888999987542  2222 222222222  122 35579999532 


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                         ..-....++.+.+.|+-.++  +|+++
T Consensus       155 ---~~G~~l~~~~~~~~Pi~~it--~Gq~V  179 (196)
T PF00448_consen  155 ---RLGALLSLAYESGLPISYIT--TGQRV  179 (196)
T ss_dssp             ---TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred             ---CcccceeHHHHhCCCeEEEE--CCCCh
Confidence               23467777888888877774  45555

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.10  E-value=7.1e-06  Score=55.94  Aligned_cols=82  Identities=24%  Similarity=0.175  Sum_probs=44.7

Q ss_pred             EEEEEEeCCCccccccc--cccc---ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           58 VRLQLWDTAGQERFRSL--IPSY---IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      ....++++.|-..-...  ....   .-..+.+|.|+|+.+-.........+......+.     ++++||+|+.++. .
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~-~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE-Q  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH--
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh-h
Confidence            45677888884433333  0100   1246889999999765444444444444444443     7788999986544 2


Q ss_pred             CHHHHHHHHHhcC
Q 030524          133 SIEEGEAKSRELN  145 (175)
Q Consensus       133 ~~~~~~~~~~~~~  145 (175)
                      ..+..++..++.+
T Consensus       159 ~i~~~~~~ir~ln  171 (178)
T PF02492_consen  159 KIERVREMIRELN  171 (178)
T ss_dssp             -HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHC
Confidence            2345555555554

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK13695 putative NTPase; Provisional

Probab=98.10  E-value=0.00021  Score=48.50  Aligned_cols=49  Identities=6%  Similarity=-0.056  Sum_probs=31.4

Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       112 ~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ..+.|++++.+|...       ...........+..+++++.-   |=+++.+.+.+.+
T Consensus       124 ~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~~~---~r~~~~~~~~~~~  172 (174)
T PRK13695        124 DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELTPE---NRDSLPFEILNRL  172 (174)
T ss_pred             hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEcch---hhhhHHHHHHHHH
Confidence            356899999887542       123444556667788888544   4457777777654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=1.5e-05  Score=61.05  Aligned_cols=138  Identities=16%  Similarity=0.139  Sum_probs=71.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC---Cccc---cc-----------------ceeeEEEEEEE-------ECCeEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQ---AT-----------------IGIDFLSKTMY-------LEDRTV   58 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~---~~-----------------~~~~~~~~~~~-------~~~~~~   58 (175)
                      .-.|+++|+.|+||||++..|.+....   ....   ..                 .++........       ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            458999999999999999977653110   0000   00                 00111000000       011224


Q ss_pred             EEEEEeCCCccccc----ccccccc--cCCcEEEEEEECCC-hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524           59 RLQLWDTAGQERFR----SLIPSYI--RDSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        59 ~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                      .+.++||+|.....    .....+.  ...+-.++|.|++. ...+..+.   ..+.   ..+ +--+|+||.|...   
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~---~~f~---~~~-~~~~I~TKlDEt~---  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI---SAYQ---GHG-IHGCIITKVDEAA---  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH---HHhc---CCC-CCEEEEEeeeCCC---
Confidence            67999999954322    1222221  23456778888873 33333322   2222   112 2245569999532   


Q ss_pred             CCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          132 VSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                       ..-.+...+...++|+..++  +|.+|
T Consensus       341 -~~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        341 -SLGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             -CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence             33456667777888777774  45554

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=9e-06  Score=62.69  Aligned_cols=117  Identities=20%  Similarity=0.219  Sum_probs=75.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCC------------CCcc--cccceeeEEEEEEE----------------ECC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------------DNTY--QATIGIDFLSKTMY----------------LED   55 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~------------~~~~--~~~~~~~~~~~~~~----------------~~~   55 (175)
                      ..+-.++.++.+...|||||.+.|+.+.-            ....  ....++++.+..+.                .++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            34557889999999999999999875321            1100  01122233222221                134


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~  126 (175)
                      ..+-+.++|.|||-+|.+.....++-.|+.++|+|.-+.--.+.-..+.+.+.    ..+.-++++||.|.
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDR  162 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhH
Confidence            56788999999999999999999999999999999876532222222222222    23444567899994

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.03  E-value=7.7e-05  Score=58.59  Aligned_cols=139  Identities=17%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC------------Ccccc-----------cceeeEEEEEEE------E-CCeEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD------------NTYQA-----------TIGIDFLSKTMY------L-EDRTV   58 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~------------~~~~~-----------~~~~~~~~~~~~------~-~~~~~   58 (175)
                      .-.|+|+|++|+||||++..|......            +.+..           ..++.+......      + .-..+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            357889999999999999887642100            00000           000111110000      0 01235


Q ss_pred             EEEEEeCCCcccccccccc---ccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 030524           59 RLQLWDTAGQERFRSLIPS---YIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~  133 (175)
                      .+.|+||+|..........   .+.  .....++|++.+.  +...+...+..+..    ..+.-+|+||.|..    ..
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt----~~  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDET----GR  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCc----cc
Confidence            7899999995432211000   010  1234566677653  23344443333332    23556788999952    23


Q ss_pred             HHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          134 IEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      ...........+.++..++  +|..|
T Consensus       500 lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEe--CCCCc
Confidence            3567777778888877774  44444

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.99  E-value=6e-06  Score=61.69  Aligned_cols=57  Identities=23%  Similarity=0.366  Sum_probs=41.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      ..++++.++|-|++||||+||+|..+....- ..+.+++..-..+..+.   .+.+.|+||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCc
Confidence            5689999999999999999999998876422 23333444444444444   579999999

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.99  E-value=3.2e-05  Score=51.14  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=35.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                      .+.+.++||+|..   .....++..+|-++++....-.+.+.-++.   .+...+     -++++||.|
T Consensus        91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~~~-----~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA---GIMEIA-----DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh---hHhhhc-----CEEEEeCCC
Confidence            4678999999854   222347788998888887653333333322   222222     267789987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.98  E-value=3.4e-05  Score=59.47  Aligned_cols=87  Identities=10%  Similarity=0.019  Sum_probs=48.1

Q ss_pred             EEEEEEEeCCCcccccc-cc---ccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524           57 TVRLQLWDTAGQERFRS-LI---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~  130 (175)
                      .+.+.++||+|...... .+   ..+  .-+.+.+++|.|....   +........+....  ++ .-+|+||.|.... 
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~i-~giIlTKlD~~~r-  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--GL-TGVILTKLDGDAR-  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--CC-CEEEEeCccCccc-
Confidence            35789999999432211 11   111  1256788999998654   23333333333221  12 3456699995221 


Q ss_pred             CCCHHHHHHHHHhcCCeEEEecc
Q 030524          131 QVSIEEGEAKSRELNVMFIETSA  153 (175)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~  153 (175)
                         .-.+.......++|+..++.
T Consensus       256 ---gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 ---GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---ccHHHHHHHHHCcCEEEEeC
Confidence               12366667777887766643

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.97  E-value=4.5e-05  Score=41.33  Aligned_cols=44  Identities=16%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             CCcEEEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524           81 DSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        81 ~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                      -.++++|++|++..  .+.+.....+.+++... .+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            36899999999954  46667777888887776 4899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=9.5e-05  Score=60.49  Aligned_cols=140  Identities=16%  Similarity=0.148  Sum_probs=72.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-Cc--cccc--------------------ceeeEEEEEE-------EECCeEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NT--YQAT--------------------IGIDFLSKTM-------YLEDRTVR   59 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~--~~~~--------------------~~~~~~~~~~-------~~~~~~~~   59 (175)
                      -.|+|+|+.|+||||++..|...... ..  ....                    .+++.....-       .-.-....
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            46889999999999999988754311 00  0000                    0011110000       00112346


Q ss_pred             EEEEeCCCccccc----cccccc--ccCCcEEEEEEECCCh-hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           60 LQLWDTAGQERFR----SLIPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        60 ~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      +.++||+|.....    ......  ....+-.++|.|++.. +.+.++.+   .+......+ +--+|+||.|...    
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~~-i~glIlTKLDEt~----  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGED-VDGCIITKLDEAT----  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccCC-CCEEEEeccCCCC----
Confidence            8999999932211    111111  2245667888888743 33443333   232211111 2245579999532    


Q ss_pred             CHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          133 SIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      ..-.+.......++|+..++  +|++|
T Consensus       338 ~~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             CccHHHHHHHHHCCCeEEEe--cCCCC
Confidence            23356667777788877774  55555

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=0.00014  Score=55.33  Aligned_cols=140  Identities=14%  Similarity=0.138  Sum_probs=73.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC--------------Ccccc-----------cceeeEEEEEEE-------ECC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQA-----------TIGIDFLSKTMY-------LED   55 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~--------------~~~~~-----------~~~~~~~~~~~~-------~~~   55 (175)
                      .+-.|+++|++|+||||.+..+......              ..+..           ..++........       -.-
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            3467899999999999999887542110              00000           011111111100       011


Q ss_pred             eEEEEEEEeCCCcccccc----cccccccC--Cc-EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           56 RTVRLQLWDTAGQERFRS----LIPSYIRD--SS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      ..+.+.++||+|......    ....++..  .+ -.++|.|++..  ...+...+..+..   .+ +--+++||.|...
T Consensus       253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~---~~-~~~~I~TKlDet~  326 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP---FS-YKTVIFTKLDETT  326 (388)
T ss_pred             CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC---CC-CCEEEEEeccCCC
Confidence            345799999999543221    12223332  23 57889998764  2334433333321   11 2345569999532


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                          ..-.+...+...+.|+..++  +|+++
T Consensus       327 ----~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        327 ----CVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ----cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence                23355666777777776663  45555

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.95  E-value=4.4e-05  Score=57.66  Aligned_cols=133  Identities=18%  Similarity=0.161  Sum_probs=71.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC-Ccc--cccceeeEEEE---------------EEE-E-----------CCeEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTY--QATIGIDFLSK---------------TMY-L-----------EDRTV   58 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~--~~~~~~~~~~~---------------~~~-~-----------~~~~~   58 (175)
                      .-.|+++||+||||||.+-.|..+... ...  ..-.+.|.+-.               .+. +           .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            567899999999999998887665431 111  11111111100               000 0           11334


Q ss_pred             EEEEEeCCCcccccc----cccccccCC--cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           59 RLQLWDTAGQERFRS----LIPSYIRDS--SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      .+.+.||.|...+..    .+..++..+  .-.-+|++++..  .+.++.-+..+..   -++. -++.||.|...    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~---~~i~-~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL---FPID-GLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc---CCcc-eeEEEcccccC----
Confidence            789999999654443    334444333  334556676643  3445554444432   1222 34459999532    


Q ss_pred             CHHHHHHHHHhcCCeEEEe
Q 030524          133 SIEEGEAKSRELNVMFIET  151 (175)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~  151 (175)
                      ..-.....+.+.+.|+..+
T Consensus       353 s~G~~~s~~~e~~~PV~Yv  371 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYV  371 (407)
T ss_pred             chhHHHHHHHHhCCCeEEE
Confidence            2345666666677766555

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.92  E-value=8.9e-05  Score=57.85  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=69.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCC-cc--c---cc-----------------ceeeEEEEEEE-------ECCeEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TY--Q---AT-----------------IGIDFLSKTMY-------LEDRTVR   59 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~-~~--~---~~-----------------~~~~~~~~~~~-------~~~~~~~   59 (175)
                      --++|+|+.|+||||++..|....... ..  .   ..                 .++........       .+-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            468999999999999999887532110 00  0   00                 00011000000       0111235


Q ss_pred             EEEEeCCCcccccc---cccccccC---CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 030524           60 LQLWDTAGQERFRS---LIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (175)
Q Consensus        60 ~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~  133 (175)
                      +.++||+|......   .....+..   ..-.++|+|.+..  ...+.+....+.    ....--+|+||.|...    .
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~----~~~~~g~IlTKlDet~----~  406 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYR----GPGLAGCILTKLDEAA----S  406 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhc----cCCCCEEEEeCCCCcc----c
Confidence            78999999432221   11111111   2336788887643  122222222221    1223345679999532    3


Q ss_pred             HHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          134 IEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      .-.+...+.+.++|+..++  +|++|
T Consensus       407 ~G~~l~i~~~~~lPI~yvt--~GQ~V  430 (484)
T PRK06995        407 LGGALDVVIRYKLPLHYVS--NGQRV  430 (484)
T ss_pred             chHHHHHHHHHCCCeEEEe--cCCCC
Confidence            4466777778888877774  56666

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.91  E-value=4.2e-05  Score=50.00  Aligned_cols=105  Identities=15%  Similarity=0.127  Sum_probs=62.1

Q ss_pred             EECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCC
Q 030524           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS   93 (175)
Q Consensus        14 l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   93 (175)
                      .-|..|+|||++.-.+...-.. ....+.-++..   .......+.+.++|+|+..  .......+..+|.++++.+.+ 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence            3479999999997665432111 00111111100   0011112678999998743  333456788999999999874 


Q ss_pred             hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524           94 RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (175)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~  126 (175)
                      ..+++.....++.+.... ...++.++.|+.+.
T Consensus        78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            556666566555554433 35567788899974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR00959 ffh signal recognition particle protein

Probab=97.91  E-value=0.00014  Score=56.06  Aligned_cols=87  Identities=13%  Similarity=0.040  Sum_probs=49.8

Q ss_pred             EEEEEEEeCCCcccccc-ccc---c--cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524           57 TVRLQLWDTAGQERFRS-LIP---S--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~  130 (175)
                      .+.+.++||+|...... ...   .  ..-+.|.+++|+|+...   +........+....  ++ .-+|.||.|.... 
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~i-~giIlTKlD~~~~-  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--GL-TGVVLTKLDGDAR-  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--CC-CEEEEeCccCccc-
Confidence            35689999999532221 111   1  12357889999998754   23333334443222  22 3556799994221 


Q ss_pred             CCCHHHHHHHHHhcCCeEEEecc
Q 030524          131 QVSIEEGEAKSRELNVMFIETSA  153 (175)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~  153 (175)
                         .-.+...+...++|+..++.
T Consensus       255 ---~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 ---GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ---ccHHHHHHHHHCcCEEEEeC
Confidence               22366677777887776653

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.90  E-value=6.1e-05  Score=58.22  Aligned_cols=135  Identities=16%  Similarity=0.156  Sum_probs=71.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC----CC------CCccccc-----------ceeeEEEEEEEE-----------CC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD----KF------DNTYQAT-----------IGIDFLSKTMYL-----------ED   55 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~----~~------~~~~~~~-----------~~~~~~~~~~~~-----------~~   55 (175)
                      .+..|+++|++|+||||++..|...    ..      .+.+.+.           .++..+......           ..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            4678999999999999998876531    10      0111110           111111110000           00


Q ss_pred             eEEEEEEEeCCCccccccc----cccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524           56 RTVRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~  129 (175)
                      ....+.++||+|.......    ....  +..+|.+++|+|++...   ........+....  + ..-+|.||.|... 
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a-  246 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTA-  246 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCC-
Confidence            1237899999995433211    1111  33688999999987642   2222223322211  1 2346679999522 


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEec
Q 030524          130 RQVSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s  152 (175)
                         ..-.+.......+.|+..++
T Consensus       247 ---~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 ---KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             ---cccHHHHHHHHHCcCEEEEe
Confidence               12355666677777776664

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.90  E-value=0.00014  Score=56.26  Aligned_cols=90  Identities=14%  Similarity=0.105  Sum_probs=49.9

Q ss_pred             EEEEEEeCCCccccc----cccccccc---CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524           58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~  130 (175)
                      +.+.++||+|.....    .....++.   ...-.++|++++-.  ...+...+..+..   .+. --++.||.|...  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---~~~-~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---LPL-DGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---CCC-CEEEEecccccc--
Confidence            578999999964332    12223333   33466777887533  2233333233321   122 246679999532  


Q ss_pred             CCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          131 QVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                        ....+...+...++|+..++  +|.+|
T Consensus       372 --~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence              23357777888888877774  44443

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=0.00017  Score=55.18  Aligned_cols=134  Identities=20%  Similarity=0.237  Sum_probs=68.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC-CC----------Cccc-----------ccceeeEEEEE-E-----EECCeEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK-FD----------NTYQ-----------ATIGIDFLSKT-M-----YLEDRTVRL   60 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~-~~----------~~~~-----------~~~~~~~~~~~-~-----~~~~~~~~~   60 (175)
                      ...++++|++||||||++..|.... ..          +.+.           ...+++..... .     ......+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3568899999999999999886421 00          0000           01111111110 0     011134578


Q ss_pred             EEEeCCCcccccc----ccccccc-----CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524           61 QLWDTAGQERFRS----LIPSYIR-----DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        61 ~i~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                      .++||+|......    .+..++.     ...-.++|.|++...  +.+......+.   ..+ +--+|+||.|...   
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~---~~~-~~glIlTKLDEt~---  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYE---SLN-YRRILLTKLDEAD---  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhc---CCC-CCEEEEEcccCCC---
Confidence            9999999542211    2222222     234677888887542  22332222221   112 2245569999532   


Q ss_pred             CCHHHHHHHHHhcCCeEEEec
Q 030524          132 VSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (175)
                       ..-.+...+...+.|+..++
T Consensus       374 -~~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        374 -FLGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             -CccHHHHHHHHHCCCEEEEe
Confidence             22346667777787766654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=8.7e-05  Score=56.08  Aligned_cols=134  Identities=16%  Similarity=0.234  Sum_probs=69.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC----C-----C-Ccccc-----------cceeeEEEEEE--EE-------C-CeE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK----F-----D-NTYQA-----------TIGIDFLSKTM--YL-------E-DRT   57 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~----~-----~-~~~~~-----------~~~~~~~~~~~--~~-------~-~~~   57 (175)
                      .-.++++|+.|+||||++..+....    .     . +.+..           ..++.+....-  .+       . ...
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~  285 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC  285 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence            4568899999999999998875421    0     0 01111           01111111000  00       0 023


Q ss_pred             EEEEEEeCCCcccccc----ccccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524           58 VRLQLWDTAGQERFRS----LIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                      +.+.++||+|......    ....+..  +.+.+++|.+.+  ...+.+...+..+.   ..+ +--+|+||.|...   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~---~l~-i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA---EIP-IDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC---cCC-CCEEEEEcccCCC---
Confidence            5789999999643222    2222222  446667777653  22333333333221   112 2345579999532   


Q ss_pred             CCHHHHHHHHHhcCCeEEEec
Q 030524          132 VSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (175)
                       ..-.+...+...+.|+..++
T Consensus       357 -~~G~~Lsv~~~tglPIsylt  376 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMT  376 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEe
Confidence             23466777788888876664

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.81  E-value=1.9e-05  Score=50.20  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

...

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.76  E-value=0.0002  Score=49.49  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=19.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+-++++||.||||||+.+.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            45678999999999999988753

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.75  E-value=0.00019  Score=44.33  Aligned_cols=82  Identities=15%  Similarity=0.143  Sum_probs=50.7

Q ss_pred             EEEEC-CCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        12 i~l~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      |.+.| ..|+||||+...+...-.. ...+..-++       .+.. +.+.++|+|+...  ......+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d-------~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID-------LDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe-------CCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence            56776 6699999998766542211 111111111       1111 6789999998543  223356778999999998


Q ss_pred             CCChhhHHhHHHHHH
Q 030524           91 VASRQSFLNTSKWID  105 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~  105 (175)
                      . +..+++.+.++++
T Consensus        71 ~-~~~s~~~~~~~~~   84 (104)
T cd02042          71 P-SPLDLDGLEKLLE   84 (104)
T ss_pred             C-CHHHHHHHHHHHH
Confidence            6 4567777776665

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.75  E-value=3.4e-05  Score=42.79  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=18.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..+|.|+.|+|||||++.+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999998653

>PRK08118 topology modulation protein; Reviewed

Probab=97.74  E-value=2.7e-05  Score=52.52  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +|+|+|++|||||||...|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=8.6e-05  Score=55.65  Aligned_cols=100  Identities=20%  Similarity=0.248  Sum_probs=57.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc---------------------cceeeEEEEEEEE------------
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA---------------------TIGIDFLSKTMYL------------   53 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~------------   53 (175)
                      .++--|+++|-.|+||||.+-.|........+..                     ...+.++......            
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence            3456789999999999999887654221111100                     1223344332211            


Q ss_pred             -CCeEEEEEEEeCCCccccc-cccc-----ccccCCcEEEEEEECCChhhHHhHHHHHHH
Q 030524           54 -EDRTVRLQLWDTAGQERFR-SLIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDE  106 (175)
Q Consensus        54 -~~~~~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  106 (175)
                       ....+.+.|.||+|..... ++..     .-.-+.|-+|||.|++=...-+...+.+++
T Consensus       179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~  238 (483)
T KOG0780|consen  179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE  238 (483)
T ss_pred             HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence             2345679999999943211 1111     112368999999999866555554443333

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.72  E-value=8.1e-05  Score=54.19  Aligned_cols=57  Identities=21%  Similarity=0.346  Sum_probs=35.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC------CcccccceeeEEEEE-EEECCeEEEEEEEeCCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G   67 (175)
                      ..++++++|-||+|||||+|.+.....-      ....+..  +..... +.+.... .+.+.||||
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGV--T~~V~~~iri~~rp-~vy~iDTPG  205 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGV--TRRVSERIRISHRP-PVYLIDTPG  205 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCc--eeeehhheEeccCC-ceEEecCCC
Confidence            4689999999999999999987543221      1222222  222222 2222222 488999999

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.69  E-value=3.1e-05  Score=50.58  Aligned_cols=20  Identities=20%  Similarity=0.506  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      |+++|+|||||||++..+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>PRK07261 topology modulation protein; Provisional

Probab=97.69  E-value=3.5e-05  Score=52.17  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +|+|+|++|||||||...+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.68  E-value=3.8e-05  Score=52.33  Aligned_cols=22  Identities=18%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +|+|+|+|||||||+...|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998876

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.67  E-value=0.00017  Score=46.65  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.|++.|+.|+|||||++.+...-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            458899999999999999988753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.66  E-value=0.00037  Score=45.14  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ...+++.|++|+|||++++.+....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4568999999999999999988754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.66  E-value=0.00077  Score=50.70  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++.|..|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            456699999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.64  E-value=0.0006  Score=41.02  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=47.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-ccccccCCcEEEEEEE
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYD   90 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   90 (175)
                      +++.|.+|+|||++...+...-.... .+..-         ++    .+.+.|+++.-..... .......+|.++++.+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~---------~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLL---------ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEE---------EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            67889999999999987765321111 11111         11    6899999985432221 1345567899999988


Q ss_pred             CCChhhHHhHHHH
Q 030524           91 VASRQSFLNTSKW  103 (175)
Q Consensus        91 ~~~~~~~~~~~~~  103 (175)
                      .. ..+.......
T Consensus        68 ~~-~~~~~~~~~~   79 (99)
T cd01983          68 PE-ALAVLGARRL   79 (99)
T ss_pred             Cc-hhhHHHHHHH
Confidence            65 3444444443

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.61  E-value=0.00062  Score=46.37  Aligned_cols=88  Identities=13%  Similarity=0.103  Sum_probs=48.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEe--CC-CcccccccccccccCCcEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD--TA-GQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D--~~-G~~~~~~~~~~~~~~~d~~i   86 (175)
                      =.++++|+.|+|||||++.+.+-..+..     +      .+.+++..+.+..-+  .+ |+.....+.+.+..+.++++
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll   94 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNG-----D------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL   94 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCC-----c------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4688999999999999999887542211     1      011112111111111  33 34344445566677777766


Q ss_pred             EE--EECCChhhHHhHHHHHHHHH
Q 030524           87 VV--YDVASRQSFLNTSKWIDEVR  108 (175)
Q Consensus        87 ~v--~d~~~~~~~~~~~~~~~~~~  108 (175)
                      +=  .+.-|+.+-+.+..++.++.
T Consensus        95 LDEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          95 FDEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHH
Confidence            62  22235555555666666554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.60  E-value=0.00039  Score=50.49  Aligned_cols=133  Identities=18%  Similarity=0.177  Sum_probs=70.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC----C-----CC-c-----------ccccceeeEEEEEEE---------E-CCeEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK----F-----DN-T-----------YQATIGIDFLSKTMY---------L-EDRTV   58 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~----~-----~~-~-----------~~~~~~~~~~~~~~~---------~-~~~~~   58 (175)
                      -+++++|++|+||||++..+....    .     .. .           +....+++.......         . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            689999999999999988765421    0     00 0           000111111111000         0 11245


Q ss_pred             EEEEEeCCCcccccc----cccccc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           59 RLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      .+.++||+|......    .+..++  .+.+-.++|.|++..  .+.+......+..    -.+--++.||.|...    
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~----  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA----  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence            789999999653221    122222  245678999997632  2233333333322    122345669999543    


Q ss_pred             CHHHHHHHHHhcCCeEEEec
Q 030524          133 SIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~s  152 (175)
                      ..-.+...+...+.|+..++
T Consensus       226 ~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             CccHHHHHHHHHCcCEEEEe
Confidence            23356667777788776664

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.60  E-value=0.00045  Score=42.92  Aligned_cols=103  Identities=16%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             EEEE-CCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           12 LVFL-GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        12 i~l~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      |.++ +..|+||||+.-.|...-.......+.-++     ...... ..+.++|+|+...  ......+..+|.++++.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence            3444 578999999876654321111011111111     000000 1689999987542  233446778999999988


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCC-CCcEEEEEeC
Q 030524           91 VASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNK  123 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nk  123 (175)
                      . +..++..+..+++.+.....+ ...+.+++|+
T Consensus        74 ~-~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 Q-DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             C-ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            6 456777777777777655433 4567677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.59  E-value=5.8e-05  Score=53.01  Aligned_cols=22  Identities=14%  Similarity=0.215  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -++++||+|||||||+|-+-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999976543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.59  E-value=7.4e-05  Score=42.67  Aligned_cols=21  Identities=14%  Similarity=0.419  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |.+.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999988765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.59  E-value=8.3e-05  Score=50.27  Aligned_cols=28  Identities=14%  Similarity=0.172  Sum_probs=23.2

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +.....-+.++|++|||||||+.+++..
T Consensus         2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          2 NKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            3445567899999999999999998864

>TIGR00235 udk uridine kinase

Probab=97.57  E-value=9.2e-05  Score=51.71  Aligned_cols=27  Identities=15%  Similarity=0.158  Sum_probs=22.8

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..+...-|+++|++|||||||++.+.+
T Consensus         2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         2 DKPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            345557899999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.56  E-value=7.2e-05  Score=51.89  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =.++++||+|||||||++.+-+-
T Consensus        29 evv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35789999999999999987653

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.52  E-value=6.2e-05  Score=50.49  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=17.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999998865

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.52  E-value=0.0013  Score=52.19  Aligned_cols=84  Identities=10%  Similarity=0.012  Sum_probs=47.3

Q ss_pred             cEEEEEEECCCh---hhHHhHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCC-C-----C--HHHHHHHHHhcCCeEEE
Q 030524           83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDV-IIVLVGNKTDLVEKRQ-V-----S--IEEGEAKSRELNVMFIE  150 (175)
Q Consensus        83 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~-~~iiv~nk~D~~~~~~-~-----~--~~~~~~~~~~~~~~~~~  150 (175)
                      --+|+|=|+-+-   ++ ...+..+..+...  ... |+|+|++-+|...... .     +  .-.......+.++..+.
T Consensus       133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~  209 (519)
T PF03215_consen  133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIK  209 (519)
T ss_pred             ceEEEeeccccccchhH-HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEE
Confidence            456677666542   22 3334444443333  234 9999999665322111 0     0  01124455667788888


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 030524          151 TSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~  169 (175)
                      ..+....-+...+..++..
T Consensus       210 FNpIa~T~mkKaL~rI~~~  228 (519)
T PF03215_consen  210 FNPIAPTFMKKALKRILKK  228 (519)
T ss_pred             ecCCCHHHHHHHHHHHHHH
Confidence            8888877777777776554

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.52  E-value=0.00019  Score=45.68  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=31.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (175)
                      --|++-|+-|+|||||.+.++..--......+.++......-..+..-+.+.++-..+.++
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e   76 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEE   76 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHH
Confidence            4578889999999999999877432222233333333322222222334555665555444

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK10646 ADP-binding protein; Provisional

Probab=97.49  E-value=0.00068  Score=44.84  Aligned_cols=58  Identities=14%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      -|++-|+-|+|||||.+.++..--......+.+++.....-..+..-+.+.+|-..+.
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H~DlYRL~~~   87 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADP   87 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEEEeeccCCCH
Confidence            4788899999999999999775322333444444433322212223455666655543

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.48  E-value=0.00011  Score=47.95  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+++||+|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999998864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.48  E-value=0.00091  Score=52.48  Aligned_cols=90  Identities=8%  Similarity=-0.026  Sum_probs=51.7

Q ss_pred             cEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      -.+|+|=|+-+...+.....+.+.+..+.. ...|+|+++|-+-...-......-...+-.+.++..+...+....-++.
T Consensus       195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK  274 (634)
T KOG1970|consen  195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK  274 (634)
T ss_pred             ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence            346888787654433222222222222222 5688999998776543333333334444466677777777777777777


Q ss_pred             HHHHHHHHHhh
Q 030524          162 CCHTLNSLITV  172 (175)
Q Consensus       162 ~f~~l~~~~~~  172 (175)
                      .+..++.....
T Consensus       275 ~L~ric~~e~~  285 (634)
T KOG1970|consen  275 FLKRICRIEAN  285 (634)
T ss_pred             HHHHHHHHhcc
Confidence            77776655443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.47  E-value=0.00012  Score=47.02  Aligned_cols=26  Identities=15%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD   35 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~   35 (175)
                      -.++++|++|+|||+++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14530 adenylate kinase; Provisional

Probab=97.47  E-value=0.00012  Score=51.48  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.45  E-value=0.00049  Score=45.03  Aligned_cols=60  Identities=12%  Similarity=0.082  Sum_probs=37.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (175)
                      --|.+-|+-|+|||||.+.+...--......+.+++...........-+.+.+|-....+
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~lyH~DlYRl~d~e   85 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLPLYHFDLYRLSDPE   85 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeeehhhcCCCCcEEEEeeeccCChH
Confidence            457788999999999999988754334444444444443333233445566666555433

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.45  E-value=0.00015  Score=51.45  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..+.+|+|+|+|||||||+...|...
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988654

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.43  E-value=5.2e-05  Score=56.96  Aligned_cols=59  Identities=27%  Similarity=0.311  Sum_probs=0.0

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      ++...+.|.++|-||+||||++|+|....+... .|-.+-+..=..++.-.   .+-++|+||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmk---rIfLIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMK---RIFLIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHh---ceeEecCCC

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.42  E-value=0.00013  Score=47.25  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            368999999999999999888754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.42  E-value=0.00012  Score=46.66  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988654

...

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.41  E-value=0.00015  Score=49.74  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999998664

>PRK08233 hypothetical protein; Provisional

Probab=97.40  E-value=0.00018  Score=48.91  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..-|++.|++|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467888999999999999998764

>PRK06217 hypothetical protein; Validated

Probab=97.40  E-value=0.00015  Score=49.64  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+|+|+|.+||||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.40  E-value=0.00071  Score=46.96  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 030524           12 LVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      |+++|++||||||+++.++...
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00015  Score=51.36  Aligned_cols=21  Identities=19%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ++++||+|+|||||++-+.+-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999987764

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.40  E-value=0.00014  Score=49.46  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.40  E-value=0.00021  Score=49.96  Aligned_cols=26  Identities=15%  Similarity=0.231  Sum_probs=22.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++..|+|.|++|||||||.+.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999988764

>PRK03839 putative kinase; Provisional

Probab=97.38  E-value=0.00016  Score=49.30  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +|+++|+|||||||+...|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988654

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.37  E-value=0.00017  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -|+++|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.37  E-value=0.00018  Score=46.11  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998865

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.35  E-value=0.00018  Score=49.25  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.34  E-value=0.00022  Score=50.72  Aligned_cols=26  Identities=27%  Similarity=0.664  Sum_probs=22.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..+++++++|++|||||+|+-.++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            35689999999999999999888754

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.33  E-value=0.00021  Score=49.13  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .=|+|+||+|||||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458899999999999999998753

>PRK14531 adenylate kinase; Provisional

Probab=97.33  E-value=0.00022  Score=48.81  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+|+++|+|||||||+...+...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988653

>PRK13949 shikimate kinase; Provisional

Probab=97.33  E-value=0.00021  Score=48.34  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|+|+|++|+||||+...+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998765

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.32  E-value=0.00019  Score=49.70  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+|.|++|||||||++.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988663

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.32  E-value=0.00022  Score=44.22  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHh
Q 030524           10 YKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~   30 (175)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            458999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.32  E-value=0.00039  Score=48.54  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ...-|+|+|++|+|||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4566788899999999999998754

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.32  E-value=0.00041  Score=52.90  Aligned_cols=114  Identities=20%  Similarity=0.276  Sum_probs=62.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC----CC------CCcccc-----------cceeeEEEEEEE-----E-------
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD----KF------DNTYQA-----------TIGIDFLSKTMY-----L-------   53 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~----~~------~~~~~~-----------~~~~~~~~~~~~-----~-------   53 (175)
                      ..+..|+++|-.||||||..-.|...    ..      .+.|.|           ..+++++.....     +       
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            35688999999999999997765431    11      112222           122333333110     0       


Q ss_pred             -CCeEEEEEEEeCCCcccccc-ccc-----ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524           54 -EDRTVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (175)
Q Consensus        54 -~~~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~  126 (175)
                       ....+.+.|+||+|.-.... ++.     .-.-+.|=+++|.|+.-...-.+..+.+.+-..     +. -+|+||.|-
T Consensus       178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~-----it-GvIlTKlDG  251 (451)
T COG0541         178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG-----IT-GVILTKLDG  251 (451)
T ss_pred             HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC-----Cc-eEEEEcccC
Confidence             11235799999999433222 111     123478999999998866444444333222221     11 244578773

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.32  E-value=0.00023  Score=48.90  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=21.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .-.++++|++||||||+++.+++-.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4578999999999999999988753

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PLN02200 adenylate kinase family protein

Probab=97.29  E-value=0.00035  Score=49.80  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+..|+++|+|||||||+..+|..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998865

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.29  E-value=0.00019  Score=48.65  Aligned_cols=24  Identities=25%  Similarity=0.548  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .=+++.||+|+|||||+.+|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457888999999999999999865

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.29  E-value=0.001  Score=49.22  Aligned_cols=143  Identities=18%  Similarity=0.178  Sum_probs=75.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc---------------------cceeeEEEEEEE-------E-----
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA---------------------TIGIDFLSKTMY-------L-----   53 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~-------~-----   53 (175)
                      .++.-|+++|-.|+||||-+-.|..........-                     -.+.+.......       .     
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            3578999999999999999988765321111000                     011222111100       0     


Q ss_pred             -CCeEEEEEEEeCCCccccc-----------cccccccc-CCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEE
Q 030524           54 -EDRTVRLQLWDTAGQERFR-----------SLIPSYIR-DSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVL  119 (175)
Q Consensus        54 -~~~~~~~~i~D~~G~~~~~-----------~~~~~~~~-~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii  119 (175)
                       ...++.+.++||+|.-...           ..+....+ ..|=++++.|++-+. +++..+.+ .+...     +- -+
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~-----l~-Gi  289 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVG-----LD-GI  289 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcC-----Cc-eE
Confidence             1134679999999932111           11122222 234478888998663 34333332 22221     22 45


Q ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524          120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus       120 v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      ++||.|-...-    --....+..+++|+..+-  -|++++++
T Consensus       290 IlTKlDgtAKG----G~il~I~~~l~~PI~fiG--vGE~~~DL  326 (340)
T COG0552         290 ILTKLDGTAKG----GIILSIAYELGIPIKFIG--VGEGYDDL  326 (340)
T ss_pred             EEEecccCCCc----ceeeeHHHHhCCCEEEEe--CCCChhhc
Confidence            67999943211    133456677788877774  34555544

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.28  E-value=0.00023  Score=46.55  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .|+++|+.|+|||||+..|+..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>PRK14532 adenylate kinase; Provisional

Probab=97.28  E-value=0.00025  Score=48.70  Aligned_cols=22  Identities=23%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +|+++|+|||||||+..+|...
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998754

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.27  E-value=0.00023  Score=48.93  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +|+++|+|||||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.26  E-value=0.00036  Score=47.37  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ...-|++.|++||||||+.+.+...
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4468999999999999999987653

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.26  E-value=0.0031  Score=42.90  Aligned_cols=86  Identities=17%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~  135 (175)
                      ..+.+.++|+|+...  ......+..+|.++++...+ ..+...+.+.++.+...   +.|+.+++||+|...   ....
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence            456899999996432  23334567899999999876 44666666666655432   467889999999532   2345


Q ss_pred             HHHHHHHhcCCeEEE
Q 030524          136 EGEAKSRELNVMFIE  150 (175)
Q Consensus       136 ~~~~~~~~~~~~~~~  150 (175)
                      +.++++.+.+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677788888887654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.26  E-value=0.00038  Score=52.66  Aligned_cols=24  Identities=21%  Similarity=0.560  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -+++++|.+|+|||||+|.+++..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            478999999999999999998753

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.26  E-value=0.00026  Score=49.27  Aligned_cols=23  Identities=17%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      --|+++|++|||||||++.+.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999998875

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.26  E-value=0.00025  Score=48.37  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+++|+|||||||+..+|...
T Consensus         2 i~i~G~pGsGKst~a~~la~~   22 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVEN   22 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988654

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.24  E-value=0.0019  Score=48.60  Aligned_cols=25  Identities=16%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ..+|+++|++||||||+++.+++.-
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHccc
Confidence            5789999999999999999998754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.24  E-value=0.0003  Score=47.75  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =.++++|++|+|||||+|-+.+-
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhc
Confidence            46899999999999999977653

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.23  E-value=0.00026  Score=49.94  Aligned_cols=21  Identities=19%  Similarity=0.215  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |++.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999988753

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.00029  Score=52.51  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 030524           12 LVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ++++||+|+|||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987743

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.22  E-value=0.00029  Score=45.87  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .|+++|++|+|||+|+..+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01351 adk adenylate kinases

Probab=97.21  E-value=0.00031  Score=49.16  Aligned_cols=21  Identities=33%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|+|+|+|||||||+..+|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.21  E-value=0.0021  Score=47.17  Aligned_cols=107  Identities=17%  Similarity=0.243  Sum_probs=60.8

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-------------
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------------   70 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------   70 (175)
                      +...+-.+++++|++|.|||++++++........ ...             ...+.+....+|....             
T Consensus        56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg  121 (302)
T PF05621_consen   56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-------------AERIPVVYVQMPPEPDERRFYSAILEALG  121 (302)
T ss_pred             CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-------------CccccEEEEecCCCCChHHHHHHHHHHhC
Confidence            3445567899999999999999999998654321 111             1123455555554211             


Q ss_pred             -----------ccccccccccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524           71 -----------FRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (175)
Q Consensus        71 -----------~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~  124 (175)
                                 ........++...+=++++|=-+.   .+....+..+..++.... -.+|++.+|++-
T Consensus       122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                       111222445567777888873321   233333444444433332 579999988753

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.19  E-value=0.00038  Score=47.36  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHh
Q 030524            9 KYKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~   30 (175)
                      .-.++++|+.|+|||||++.++
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3578999999999999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK02496 adk adenylate kinase; Provisional

Probab=97.18  E-value=0.0004  Score=47.51  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+|+++|+|||||||+...+...
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~   24 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEH   24 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988653

>PRK14527 adenylate kinase; Provisional

Probab=97.17  E-value=0.00053  Score=47.25  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..-.|+++|+|||||||+...+..
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999998864

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.16  E-value=0.0017  Score=48.72  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=22.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ...+|+++|++||||||+++.++..-
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhC
Confidence            36799999999999999999988754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.16  E-value=0.00038  Score=49.94  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -++++||.|+|||||++.+.+-
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3689999999999999998773

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-68
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-67
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-67
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-66
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-66
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-66
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-66
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-56
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-32
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-31
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-31
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		9e-31
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-30
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-30
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-30
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-30
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-30
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-30
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-30
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-30
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-30
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-30
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-30
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-30
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		7e-30
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		8e-30
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-29
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-29
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-29
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		7e-29
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-29
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		8e-29
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		9e-29
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-28
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-28
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-28
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-28
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		7e-28
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-27
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-27
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-27
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		6e-27
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-27
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-27
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		7e-27
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		8e-27
4fmc_B	171	Espg-Rab1 Complex Length = 171		8e-27
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-27
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-26
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-26
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-26
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-26
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		3e-26
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-26
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-26
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-26
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-26
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-26
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-26
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		8e-26
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		9e-26
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-25
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-25
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-25
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-25
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-25
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-25
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		7e-25
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		7e-25
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		7e-25
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-25
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		8e-25
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		8e-25
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		8e-25
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		9e-25
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-24
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-24
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-24
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-24
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-24
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-24
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-23
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-23
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-23
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-23
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-23
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-23
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-23
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		5e-23
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-23
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-22
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-22
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-22
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-22
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-21
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		8e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		9e-21
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-20
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-19
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-19
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-19
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-18
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		5e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-16
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-14
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-14
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-14
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-14
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-14
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-14
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-14
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-14
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		5e-14
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-14
1byu_A	216	Canine Gdp-Ran Length = 216		7e-14
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		7e-14
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		7e-14
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-14
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		8e-14
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		9e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		9e-14
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-13
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-13
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-13
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-13
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-13
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-13
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-13
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-13
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-13
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-13
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-13
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-13
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-13
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-13
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-13
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-13
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-13
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		6e-13
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-12
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-12
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-12
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		6e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		8e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-11
1mh1_A	186	Small G-Protein Length = 186		1e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-11
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-11
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-11
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-11
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-11
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		4e-11
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-11
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-11
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-11
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-11
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-11
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-11
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		5e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		5e-11
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		6e-11
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		6e-11
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-11
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		6e-11
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-11
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-10
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-10
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-10
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-10
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-10
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-10
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-10
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-10
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-10
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-10
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-10
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-10
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		4e-10
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-10
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-10
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-10
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-10
6q21_A	171	Molecular Switch For Signal Transduction: Structura		4e-10
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		4e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		4e-10
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		5e-10
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		5e-10
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-10
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		5e-10
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-10
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-10
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		7e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-10
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		8e-10
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-10
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		8e-10
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		9e-10
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-09
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-09
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-09
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-09
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-09
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-09
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-09
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-09
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-09
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-09
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-09
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-09
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-09
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-09
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-09
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-09
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-09
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-09
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-09
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-09
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-09
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-09
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-09
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-09
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		6e-09
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-09
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		7e-09
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		8e-09
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		9e-09
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		9e-09
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		9e-09
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		9e-09
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-08
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-08
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-08
2kb0_A	178	Cdc42(T35a) Length = 178		3e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		5e-08
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		7e-08
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		8e-08
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		4e-06
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		6e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		2e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		5e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		7e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		9e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-04

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  253 bits (645), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 134/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 2   SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 157

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  250 bits (639), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 132/152 (86%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ
Sbjct: 1   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL +
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVK 152

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  250 bits (638), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIR               SF  TSKWID+VRTERGSDVII+LVGNKT
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVS EEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  248 bits (634), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 2   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 62  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 157

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 167

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  247 bits (631), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  245 bits (626), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 131/153 (85%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG
Sbjct: 1   GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QERFRSLIPSYIR               SF  TSKWID+VRTERGSDVII+LVGNKTDL 
Sbjct: 61  QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +KRQ++IEEGE +++EL+VMFIETSAK G+N+K
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVK 153

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  213 bits (542), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/154 (67%), Positives = 119/154 (77%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KYKLVFLG+Q+VGKTSIITRF YD FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQ
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRSLIPSYIR             RQSF NT+KWI ++  ERG DVII LVGNKTDL +
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162
            R+V+ EEG  K++E N  F ETSAKAG NIK+ 
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVL 154

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 98/157 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D + ++Y +TIG+DF  +T+ LE++TV+LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             R SF N  +WI E+      +V  +LVGNK DLV K
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V+ +EG   +    + FIETSAK  +N++   HT+
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             R SFL+   WI++VR   GS+++ +L+GNK+DL E 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 130 RQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           R+VS+ E ++ +   +++  IETSAK   N++
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 96/156 (61%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
            S + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++++ L+D TV+ ++W
Sbjct: 3   ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
           DTAGQER+ SL P Y R             +++F     W+ E++ +    ++I L GNK
Sbjct: 63  DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            DL  KR V  EE +A + + +++F+ETSAK   N+
Sbjct: 123 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNV 158

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R               +F     W+ E++ +   +++I L GNK DL
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E +A + + +++F+ETSAK   N+
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 153

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 92/152 (60%), Gaps = 3/152 (1%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-- 128
           F SL P Y R              QSF+    W+ E+  +   D+II LVGNK D ++  
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 -KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +R+V+ EEGE  + E  ++F ETSAK G N+
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENV 156

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           RQVS E GE  + +  + F+ETSAKA  N++    TL
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 95/153 (62%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 65  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 157

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 95/153 (62%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           RQVS E GE  + +  + F+ETSAKA  N++    TL
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 93/150 (62%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           + SL P Y R             + SF    KW+ E++ +   ++++ L GNK+DL++ R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +V+ E+ +  ++E  + F+ETSAK   N+K
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVK 163

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 65  GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F ETSAK   N+
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFXETSAKTSXNV 157

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 94/154 (61%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDT
Sbjct: 2   SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG ER+ SL P Y R               +F     W+ E++ +   +++I L GNK D
Sbjct: 62  AGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           L  KR V  +E +A + + +++F+ETSAK   N+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 155

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 94/154 (61%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ ++KLV LG+ +VGK+S++ RF+  +F    ++TI   FL++T+ L+D TV+ ++WDT
Sbjct: 2   SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQER+ SL P Y R               +F     W+ E++ +   +++I L GNK D
Sbjct: 62  AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           L  KR V  +E +A + + +++F+ETSAK   N+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 155

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           G ER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 123 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 155

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 127
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     TL  LI
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     TL  LI
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     TL  LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     TL  LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 99/161 (61%), Gaps = 2/161 (1%)
Query: 2   APVSALAKY--KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVR 59
            P+ +   Y  K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++
Sbjct: 1   GPLGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIK 60
Query: 60  LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVL 119
           LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L
Sbjct: 61  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIML 120
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 121 IGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 161

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  122 bits (306), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 96/151 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R             R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVE 172

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     TL  LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQ 68
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F +K++ L++ + ++ Q+WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+R++  +Y R             + SF N  KW+ E+R    S+++I+LVGNK+DL  
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            R ++  +    +++  + FIETSA    N++L  H L
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 95/170 (55%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +   +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++L
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           Q+WDTAGQER+R++  +Y R             ++SF     W  +++T    +  ++LV
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           GNK DL ++R V  E+G   + +L   F E SAK   N+K     L  +I
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 88/156 (56%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERF SL P Y R             + SF    KW+ E++     ++++ + GNK 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL + R+V +++ +  +  +  + +ETSAK   NI+
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y R             + SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162
           +R V  E+GE  ++E  + F+ETSAK G N+ L 
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 177

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 95/163 (58%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAG
Sbjct: 5   ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QERFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL 
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            K+ V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 98/157 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  +E  A + +  + FIETSA    N++    T+
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 94/161 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 98/157 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  +E  A + +  + FIETSA    N++    T+
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++S+ N  +W+ E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++S+ N  +W+ E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 94/161 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 94/161 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  115 bits (289), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 96/151 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + + N+ FIETSA    N++
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVE 156

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 93/161 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK  ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 93/160 (58%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 184

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 90/144 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 130 RQVSIEEGEAKSRELNVMFIETSA 153
           R V  EE +  ++E  ++F ETSA
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSA 157

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 85/154 (55%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +L + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDT
Sbjct: 2   SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQERFR+L P Y R              ++F     W+ E+R      +++ + GNK D
Sbjct: 62  AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           L + R+V   + +  +  ++ +F+ETSAK   NI
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAINI 155

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 90/157 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ E+
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  E+G+  + +L   F E SAK   +++     L
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 85/155 (54%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SAL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFR+L P Y R              ++F     W+ E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL + R+V   + +  +  ++ +F+ETSAK   NI
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAINI 156

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITV 172
           R VS E G   +  L   F E SAK   N+K    T   L+ V
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVK---QTFERLVDV 165

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 97/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  +E  A + +  + FIETSA    N++    T+
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 97/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  +E  A + +  + FIETSA    N++    T+
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 84/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAK 151

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  112 bits (281), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF+N  +W+ E+  +   DV  +LVGNK D  E+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPER 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V  E+    + ++ +   ETSAK   N++   + +  L+
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 96/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I LVGNK+DL   
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  +E  A + +  + FIETSA    N++    T+
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 96/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I LVGNK+DL   
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  +E  A + +  + FIETSA    N++    T+
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 93/161 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVG K DL  K
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S+   YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRS+  SY R              +SFLN  +W+D +       V I+LVGNK 
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143
Query: 125 DLVE------KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           D+ +      ++ V    GE  +     +F ETSAK G NI
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 91/151 (60%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++ + + W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVE 176

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 91/159 (57%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP +    +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQERFR++  SY R             R ++ + S W+ + R     + +I+L+G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           NK DL  +R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTA
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD 125
           GQERFR+L PSY R             R +F+    W++E+ T    +D++  LVGNK D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
             E R+V   EG   +R+ + +FIE SAK
Sbjct: 133 -KENREVDRNEGLKFARKHSXLFIEASAK 160

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVE 159

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 93/157 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R+V  EE    +    ++F+ETSA    N++L   T+
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           +P  A  K +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQERF S+  +Y R             +++F +  KW+  +      D  ++LVG
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           NK D    R+++ ++GE  ++++  M F E SAK  FN+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAK 165

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 93/157 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R+V  EE    +    ++F+ETSA    N++L   T+
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 167

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 89/144 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F ++T+ +E++ ++ Q+WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSA 153
           R V  +E +  + E  ++F ETSA
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSA 154

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAK 151

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  109 bits (272), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVE 159

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVE 172

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 90/161 (55%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D  ++
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R VS E G   +  L   F E SAK   N+K     L  +I
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 90/159 (56%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP +    +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ
Sbjct: 23  APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQ RFR++  SY R             R ++ + S W+ + R     + +I+L+G
Sbjct: 83  IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           NK DL  +R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 181

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE           +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKLCCHTL 166
            E RQV+ +  +A    + N+ + ETSAK   N++    T+
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKLCCHTL 166
            E RQV+ +  +A    + N+ + ETSAK   N++    T+
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVE 161

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAGQERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    TL  LI
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 2   APVSALAK---YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
            P+ +  K   +K++ LGD  VGK+S++ R++ +KFD+    TIG++FL+K + ++   V
Sbjct: 1   GPLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFV 60
Query: 59  RLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSD 114
            +Q+WDTAGQERFRSL   + R              QSF N S W  E       +    
Sbjct: 61  TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 120
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
              V++GNKTD+ E RQVS EE +A  ++  +  + ETSAK   N+
Sbjct: 121 FPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNV 165

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 6/161 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE           +   V++GNK D 
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKLCCHTL 166
            E RQV+ +  +A    + N+ + ETSAK   N++    T+
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G +++
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVE 162

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 3   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 60
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVI 116
           Q+WDTAGQERFRSL   + R              QSF N S W  E       +      
Sbjct: 61  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 120
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
            V++GNK D+ E RQVS EE +A  R+  +  + ETSAK   N+
Sbjct: 121 FVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV 163

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVI 116
           Q+WDTAGQERFRSL   + R              QSF N S W  E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
            V++GNK D+ E RQVS EE +A  R+  +  + ETSAK   N+
Sbjct: 119 FVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  +Y R             R+SF   S W ++V  E G D+   LV NK DL++  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +  EE E  ++ L + F  TS K   N+
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    TL  LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 6/161 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAG ER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE           +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKLCCHTL 166
            E RQV+ +  +A    + N+ + ETSAK   N++    T+
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    TL  LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    TL  LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    TL  LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 87/151 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G +++
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVE 159

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRL 60
           K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + L
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVL 119
           QLWDTAG ERFRSL  ++ R              QSFLN   WI +++    S+   IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            GNK+DL ++R V  EE    + +  + + ETSA  G NI      L  LI
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD+    TIG++FL++ + ++ R V LQ+WDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           F+SL   + R             RQSF N   W  E       +       V++GNK D 
Sbjct: 69  FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD- 127
Query: 127 VEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
            E RQV+ EE +    E  +  ++ETSAK   N+
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNV 161

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 71/115 (61%)
Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           L+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72  RSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           R++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 70  RFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
              QV  +  +  +   +    ETSAK
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAK 176

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 68
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 70  RFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
              QV  +  +  +   ++   ETSAK
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAK 167

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 72
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 168

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 61  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 156

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAG E + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 61  TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 156

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE 69
           K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTD 125
           RF+SL  ++ R               SF N   W DE               V++GNK D
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 126 LVEKRQVSIEEGE---AKSRELNVMFIETSAKAGFNI 159
             E +++  E+     AKS     +F+ TSAK   N+
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINV 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S+LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 3   SSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVI-IVLVGN 122
           TAG E + ++  +Y R              +SF  T+++ +++ R +   D I +++VGN
Sbjct: 62  TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           K+DL E+RQV +EE  +K+ E  V ++ETSAK   N+
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANV 158

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DTA
Sbjct: 1   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVI-IVLVGNKT 124
           G E + ++  +Y R              +SF  T+++ +++ R +   D I +++VGNK+
Sbjct: 60  GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL E+RQV +EE  +K+ E  V ++ETSAK   N+
Sbjct: 120 DLEERRQVPVEEARSKAEEWGVQYVETSAKTRANV 154

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 40/190 (21%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------- 56
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D            
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 57  --------------------------TVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXX 90
                                      ++  +WDTAGQER+ S++P Y R          
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 91  XXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150
                +      W+++++    S+ II+LV NK D   K QV I E +  +++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182
Query: 151 TSAKAGFNIK 160
           TSAK G NIK
Sbjct: 183 TSAKTGTNIK 192

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S   KY+LV +G   VGK+++  +F+   F   Y  TI  D  +K   ++DR  RL + D
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE F ++   Y+R             R SF    K+  ++ R +   +  ++L+GNK
Sbjct: 60  TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            DL  +RQV+ EEG+  +R+L V ++E SAK   N+    H L  +I
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLW 63
           S + + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW---IDEVRTERGSDVIIVLV 120
           D  GQ     ++  YI               QSF N   W   + +V  E  +  ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162
           GNK DL   R +  E+     +E        SAK G ++ LC
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 131
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 132 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 163

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 120
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 121 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 151

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL   R V  ++ +  +R   + FIETSAK    +    +TL
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N + KWI E+R      V I+LVG K DL + 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
Query: 130 RQVSIEEGEA------KSREL-----NVMFIETSAKAGFNIK 160
           +Q  I+   A      +  EL     + ++IE S+K   N+K
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVK 167

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E++  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + +   TV L LWDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N S KWI E++      V IVLVG K DL + 
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRDD 127
Query: 130 RQVSIEEGEA------KSRELNVM-----FIETSAKAGFNIK 160
           +Q  I+   A      +  EL  +     +IE S+K+  N+K
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVK 169

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 62
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 121
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
             R V  ++ +  +R   + FIETSAK    +    +TL
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G + VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D V+
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD-VK 129
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +R+V     +AK+    R+ N+ + + SAK+ +N +
Sbjct: 130 ERKV-----KAKTITFHRKKNLQYYDISAKSNYNFE 160

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ E
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 123
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           ++       +AK+    R+ N+ + + SAK+ +N +
Sbjct: 124 RKV------KAKTITFHRKKNLQYYDISAKSNYNFE 153

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ E
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 122
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           ++       +AK+    R+ N+ + + SAK+ +N +
Sbjct: 123 RKV------KAKTITFHRKKNLQYYDISAKSNYNFE 152

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS++  +  + +   Y  T   D  S  + ++ R VRLQL DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           F  L P                   SF N S KW+ E+R        I+LVG ++DL E 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139
Query: 130 RQVSIEEGEAKSREL 144
            +V IE  + K + +
Sbjct: 140 VKVLIELDKCKEKPV 154

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ D
Sbjct: 1   GSMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK
Sbjct: 60  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 119
Query: 124 TDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
            DL ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 CDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINV 156

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 12  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 72  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 129
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 130 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 160

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINV 154

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 123
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 124 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 154

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  + +  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 131
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 132 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 3/164 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAG 67
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G        +L+D+   ++  +WDTAG
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QE+   L   Y               R +  N ++W+ E +   G++  IV+  NK D+ 
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLIT 171
            ++++S +      +  N  + E SAK   N  L    L  + T
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
            +  Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L  
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-D 114
               L +W+  G+  +  L    ++             R SF   S+   ++R  R + D
Sbjct: 61  ----LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVK 160

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60  LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIV 118
           L +W+  G+  +  L    ++             R SF   S+   ++R  R + D+ I+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 160

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
            +  Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L  
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-D 114
               L +W+  G+  +  L    ++             R SF   S+   ++R  R + D
Sbjct: 61  ----LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVK 160

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L      
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 91
Query: 60  LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIV 118
           L +W+  G+  +  L    ++             R SF   S+   ++R  R + D+ I+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +  +   ++D  V +++ DTAG
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAG 85
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKT 124
           QE        ++R             R SF   L     +DE++  +  +V ++LVGNK 
Sbjct: 86  QEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKA 142
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
           DL   RQVS EEGE  + EL   F E SA  G
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTG 174

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N   KW+ E+R     +V IVLVG K DL + 
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDD 128
Query: 130 RQ--------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +         ++  +GE   +++    +IE S+K   N+K
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N   KW+ E++      + IVLVG K DL + 
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 130 RQ----------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +Q          ++  +GE   + +  V ++E S+K   N+K
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVK 167

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++A Y++V LGD  VGKTS+ + F   K +      +G D   +T+ ++     L + DT
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 66  AGQERFRSLIP--SYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGN 122
              E+        S ++             R SF + S+  I   RT +   V I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           K DL   R+VS+EEG A +   +  FIETSA    N+
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL + DTAGQE
Sbjct: 10  HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R             RQSF    K   ++ R +   D  +VLVGNK DL  
Sbjct: 69  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +RQV   E  A     +V + E SAK   N+
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNV 159

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 126
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           GNK DL   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           GNK DL   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWD
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWD 63
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   S  N   KW  EV+     +V I+LVGNK
Sbjct: 64  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 122
Query: 124 TDL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
            DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 166

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 141
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 118
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAK 146

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 132
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGK  ++  +  + F   Y  T+  D  S  + ++ + V L LWD
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWD 64
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N  +KW  EVR     +  I+LVG K
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 123
Query: 124 TDL------VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E++ V ++E SA
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+  D   + +  +     LQ+ DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV 127
           +F ++    I              RQS        +++   +G    + I+LVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+V   E EA +R     F+ETSAK   N+K
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVK 155

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 3   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 163

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 5   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 63
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 64  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 122
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 6   ALAKY-KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            L +Y K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L D
Sbjct: 20  PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVD 78
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-SDVIIVLVGNK 123
           TAGQ+ +  L  S+I                SF        ++    G + V +VLVGNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
            DL  +R+V   EG+  +      F+E+SA+
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSAR 169

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 70  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK        ++  +G A ++E++ V ++E SA
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 3   AAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 163

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 129
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E++ V ++E SA
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 139
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 3/170 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F + Y  TI   +L  T  ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKLCCHTLNSLI 170
           NK DL+  R+V+ ++G+  + + N+ +IETSAK    N+    H L  +I
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKK 139
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL   R V  ++ +  +R   + FIETSAK    +    +TL
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL   R V  ++ +  +R   + FIETSAK    +    +TL
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +     Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 3/166 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAG E + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           GNK DL   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 3/170 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L +
Sbjct: 7   PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTE-IDNQWAILDV 65
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 66  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 125
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKLCCHTLNSLI 170
           NK DL+  R+V+ ++G+  + + N+ +IETSAK    N+    H L  +I
Sbjct: 126 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 125
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 3/170 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKLCCHTLNSLI 170
           NK DL+  R+V+ ++G+  + + N+ +IETSAK    N+    H L  +I
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW+ EV+     +V I+LV NK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKK 139
Query: 125 DLVEKRQVSIE 135
           DL     V  E
Sbjct: 140 DLRSDEHVRTE 150

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 3/170 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F + Y  TI  D   K   ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKLCCHTLNSLI 170
           NK DL+  R+V+ ++G+  + + N+ +IETSAK    N+    H L  +I
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + D
Sbjct: 6   GSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILD 64
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK
Sbjct: 65  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 124
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            DL   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 125 CDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++   TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 121
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAK 149

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S + +YKLV +G   VGK+++  + + + F + Y  +I  D   K + ++  T  L + D
Sbjct: 5   SDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILD 63
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK
Sbjct: 64  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 123
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            DL   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 124 CDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 165

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 18  GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF + + + +++ R +   DV +VLVGNK 
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL   R V  ++    ++   + FIETSAK    ++   +TL
Sbjct: 137 DL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F S+   YI+             +QSF +     D++ R +R   V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKA 155
           L  +R+VS  EG A + E    F+ETSAK+
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKS 149

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK ++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 18  GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AG E + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK 
Sbjct: 77  AGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 136
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL   R V  ++ +  +R   + FIETSAK    +    +TL
Sbjct: 137 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 177

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGN+ D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 120 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 3   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 61
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL- 126
           E +  L P                   S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 120
Query: 127 -----------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                      +++  V  EEG   +  +    ++E SAK
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 160

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  +I  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 3   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 61
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL- 126
           E +  L P                   S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 120
Query: 127 -----------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                      +++  V  EEG   +  +    ++E SAK
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 160

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +    P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL 126
           DL
Sbjct: 120 DL 121

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTG 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   +W+ E++ E   +V  +L+G + DL   
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 137
Query: 127 ---------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
                    ++++ + +E+G+  ++E+    ++E SA
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + +  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           +SA+   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF 63
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGN 122
           DTAGQE +  L P                   SF N   KW+ E+ T        +LVG 
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGT 122
Query: 123 KTDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
           + DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G+E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P                 R SF N S KW  E++    +    VLVG K DL + 
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 142
Query: 129 -KRQVSIEEGEAKSRELN-VMFIETS--AKAGFN 158
               V+ +EG+   ++L  V +IE S  AK G N
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P                 R SF N S KW  E++    +    VLVG K DL + 
Sbjct: 83  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 141
Query: 129 -KRQVSIEEGEAKSRELN-VMFIETS--AKAGFN 158
               V+ +EG+   ++L  V +IE S  AK G N
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 175

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++D   Q+
Sbjct: 3   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 60
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
             R L    +              + SF   S+   ++R  R +D V I+LVGNK+DLV 
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N++
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQ 152

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           VS  + YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++
Sbjct: 2   VSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY 59
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
           D   Q+  R L    +              + SF   S+   ++R  R +D V I+LVGN
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           K+DLV  R+VS++EG A +   +  FIETSA    N++
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQ 157

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTT 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE   ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++     L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++D   Q+
Sbjct: 8   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
             R L    +              + SF   S+   ++R  R +D V I+LVGNK+DLV 
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 125
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N++
Sbjct: 126 SREVSVDEGRACAVVFDCKFIETSAALHHNVQ 157

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
            QE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
            QE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++      +F   Y  T+  ++++  + ++ R V L LWDTAGQ
Sbjct: 10  RRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQ 68
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P                   S  N   KWI EV       V I+LVG K DL 
Sbjct: 69  EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLR 127
Query: 128 EKRQ------------VSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
              Q            V+ +EG++ + ++    + E SAK G+ ++
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVR 173

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F +    TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   ++   + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P +                 SF N  ++W  EV       V I++VG KTDL + 
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 130 R------------QVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +             V+   G+  +R +  V ++E SA+   N+ 
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 35/176 (19%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIP-SYIRXXXXXXXXXXXX------------------XRQSFLNT-SKWIDEVRTE 110
           +  L P SY +                                 SF N  +KW  EVR  
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-H 124
Query: 111 RGSDVIIVLVGNKTDL------VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +  I+LVG K DL      +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 125 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 180

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAG 
Sbjct: 8   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGL 66
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL- 126
           E +  L P                   S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 67  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 125
Query: 127 -----------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                      +++  V  EEG   +  +    ++E SAK
Sbjct: 126 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 118
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 123
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 160

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 124
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 132
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 22  KTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRX 81
           K+S++ RF+   F +TY  TI  D   + +  +     LQ+ DT G  +F ++    I  
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 82  XXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVSIEEGEA 139
                       +QS          +   +GS  D+ ++LVGNK D  + R+V   E +A
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQA 138
Query: 140 KSRELNVMFIETSAKAGFNIK 160
            ++E    F+ETSAK  +N+K
Sbjct: 139 VAQEWKCAFMETSAKMNYNVK 159

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGK  ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 64
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 123
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           ++A  + K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D TV ++
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 62  LW--DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWID---EVRTERGSDVI 116
           L+  DTAG + ++  I  Y                +SF +   W +     R +R   + 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 117 IVLVGNKTDLVEKR-QVSIEEGEAKSRELNVMFIETSA 153
            VLV NKTDL  +R QV ++  +  +    + F + SA
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LG+  VGK+++   F   + DN ++     D   + + ++   V L ++D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 132
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 133 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 165

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y   +  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +K  + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 3   APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 61
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 62  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 119
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 120 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 4   APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 62
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 63  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 120
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 121 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 79  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 136
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 66  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 122
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 86
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 87  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 143
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 23  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 81
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 82  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 138
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 139 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLWDT 65
           KL  +G+   GKT+++ +    K  +     AT+GID     + + D+  R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKT 124
           AG+E F S  P +                Q+ ++  K W+  ++  R S   ++LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGTHL 120
Query: 125 DLVEKRQ 131
           D+ +++Q
Sbjct: 121 DVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLW 63
           + KL  +G+   GKT+++ +    K  +     AT+GID     + + D+  R   L +W
Sbjct: 2   RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSK-WIDEVRTERGSDVIIVLVGN 122
           D AG+E F S  P +                Q+ ++  K W+  ++  R S   ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 120
Query: 123 KTDLVEKRQ 131
             D+ +++Q
Sbjct: 121 HLDVSDEKQ 129

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 16  ELRLLMLGLDNAGKTTILKKFNGEDID-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 70
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL
Sbjct: 71  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 1  MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
          + P  +  + +L  +G Q  GKT+ +      +F+     T+G +    T       V +
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTI 69
Query: 61 QLWDTAGQERFRSLIPSYIR 80
          +LWD  GQ RFRS+   Y R
Sbjct: 70 KLWDIGGQPRFRSMWERYCR 89

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +  + +L  +G Q  GKT+ +      +F      T+G +    T       V +
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTI 69
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           ++WD  GQ RFRS+   Y R             R+    +   +  +  +     I VLV
Sbjct: 70  KIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 121 -GNKTDL 126
            GNK DL
Sbjct: 130 LGNKRDL 136

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
          +L  +G Q  GKT+ +      +F+     T+G +    T       V ++LWD  GQ R
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPR 88
Query: 71 FRSLIPSYIR 80
          FRS+   Y R
Sbjct: 89 FRSMWERYCR 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-96
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	3e-91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	5e-91
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	6e-90
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-85
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-84
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	8e-84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-76
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-75
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-74
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-73
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	8e-73
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-72
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-71
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	5e-71
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-70
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-70
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	9e-70
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-69
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-69
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-69
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-69
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-69
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-69
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-69
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-69
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	4e-69
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	5e-69
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	7e-69
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	8e-69
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-68
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-68
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-68
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-68
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	5e-68
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	5e-68
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-67
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-67
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-67
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	5e-67
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	8e-67
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	9e-67
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	9e-66
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-65
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	3e-65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-64
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-64
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-63
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-63
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-63
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-62
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-62
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-61
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-60
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-59
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-59
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	6e-59
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	4e-58
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-58
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-57
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-56
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	8e-56
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-55
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-50
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-48
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-46
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	8e-41
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	9e-41
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-40
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-40
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	9e-40
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-39
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-37
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	9e-37
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-25
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-24
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	9e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	4e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	7e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-11
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	4e-11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	7e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	9e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-10
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-10
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	9e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	6e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	8e-04

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  275 bits (705), Expect = 3e-96
 Identities = 131/154 (85%), Positives = 144/154 (93%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQERFRSLIPSYIRDS+VAVVVYD+ +  SF  TSKWID+VRTERGSDVII+LVGNKTDL
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +KRQVS EEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  275 bits (705), Expect = 9e-96
 Identities = 130/156 (83%), Positives = 145/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 167

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  263 bits (674), Expect = 3e-91
 Identities = 61/160 (38%), Positives = 98/160 (61%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           +   SA+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   + 
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
            +WDTAGQERF SL P Y R S+ AV+VYD+  + SF    KW+ E++     ++++ + 
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNK DL + R+V +++ +  +  +  + +ETSAK   NI+
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  262 bits (671), Expect = 5e-91
 Identities = 62/152 (40%), Positives = 103/152 (67%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQ
Sbjct: 12  NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+ SL P Y R ++ A++V+DV ++ SF    KW+ E++ +   ++++ L GNK+DL++
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+V+ E+ +  ++E  + F+ETSAK   N+K
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  258 bits (663), Expect = 6e-90
 Identities = 60/156 (38%), Positives = 94/156 (60%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SAL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFR+L P Y R S+ A++VYD+   ++F     W+ E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL + R+V   + +  +  ++ +F+ETSAK   NI 
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININ 157

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  258 bits (661), Expect = 1e-89
 Identities = 62/156 (39%), Positives = 105/156 (67%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A+VVYD+ + +SF     W+ E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL  KR V  +E ++ + + +++F+ETSAK   N+ 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  248 bits (635), Expect = 1e-85
 Identities = 61/151 (40%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y RDS+ A++VYD+    SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VSI+E E+ +  +      TSAK    I+
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIE 157

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  245 bits (627), Expect = 3e-84
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAG 67
           + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L     V LQ+WD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKT 124
           Q     ++  YI  +   ++VYD+ + QSF N   W   + +V  E  +  ++ LVGNK 
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162
           DL   R +  E+     +E        SAK G ++ LC
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  243 bits (623), Expect = 8e-84
 Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            F ++  +Y R +   V+V+    R+SF   S W ++V  E   D+   LV NK DL++ 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             +  EE E  ++ L + F  TS K   N+ 
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVS 155

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  225 bits (575), Expect = 5e-76
 Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV +  +F     W DE           +   V++GNK D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L  ++  +         + N+ + ETSAK   N++
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  223 bits (570), Expect = 2e-75
 Identities = 65/167 (38%), Positives = 92/167 (55%), Gaps = 6/167 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-- 127
           RFRS+  SY R +   +++YDV   +SFLN  +W+D +       V I+LVGNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148

Query: 128 ----EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
                ++ V    GE  +     +F ETSAK G NI      L   +
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  221 bits (565), Expect = 1e-74
 Identities = 67/152 (44%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++ YD+  R SFL+   WI++VR   GS+++ +L+GNK+DL E 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149

Query: 130 RQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           R+VS+ E ++ +   +++  IETSAK   N++
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  216 bits (551), Expect = 5e-73
 Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 3/157 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +   KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQERF SL P Y R++  A+VVYDV   QSF+    W+ E+  +   D+II LVGNK D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120

Query: 127 VE---KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           ++   +R+V+ EEGE  + E  ++F ETSAK G N+ 
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  217 bits (555), Expect = 8e-73
 Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 3/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +F  L   Y   +  A++++DV SR ++ N   W  ++      ++ IVL GNK D+ ++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +     +     R+ N+ + + SAK+ +N +
Sbjct: 135 KVK--AKSIVFHRKKNLQYYDISAKSNYNFE 163

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  215 bits (549), Expect = 4e-72
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 1   MAPVSALAKY--KLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDR 56
           + P+   A    K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D 
Sbjct: 10  VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT 69

Query: 57  TVRLQLW--DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-- 112
           TV ++L+  DTAG + ++  I  Y      A++V+DV+S +SF +   W + +++ R   
Sbjct: 70  TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR 129

Query: 113 -SDVIIVLVGNKTDLVEKR-QVSIEEGEAKSRELNVMFIETSAKA-GFNIK 160
              +  VLV NKTDL  +R QV ++  +  +    + F + SA   G +  
Sbjct: 130 ERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  212 bits (542), Expect = 3e-71
 Identities = 62/161 (38%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+A+++SF     W  +++T    +  ++LVGNK DL ++
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V  E+G   + +L   F E SAK   N+K     L  +I
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  212 bits (543), Expect = 5e-71
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-IDFLSKTMYLEDRTVRLQLWDTAGQ 68
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G ++     +  +   ++  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E+   L   Y   +S A++ +DV SR +  N ++W+ E +   G++  IV+  NK D+  
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           ++++S +      +  N  + E SAK   N  
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  210 bits (537), Expect = 1e-70
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 2/161 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   
Sbjct: 1   GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60

Query: 68  QERFRSLIPS-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           Q      +    ++     ++V+ V  R+SF    + +  +R  R    + ++LVGNK+D
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R+VS+EEG   +  L+   IETSA    N +      
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  209 bits (534), Expect = 7e-70
 Identities = 64/161 (39%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   +VVYDV  ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  208 bits (532), Expect = 9e-70
 Identities = 55/151 (36%), Positives = 104/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + +  + FIETSA    N++
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVE 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  208 bits (531), Expect = 1e-69
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 7/158 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV +  SF N   W DE               V++GNK 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128

Query: 125 DLVE-KRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           D  E K+ VS +  +  ++ L  +    TSAK   N+ 
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  207 bits (529), Expect = 2e-69
 Identities = 56/161 (34%), Positives = 98/161 (60%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V+ EE +  + E  ++F+E SAK G N++         I
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  207 bits (530), Expect = 2e-69
 Identities = 58/161 (36%), Positives = 99/161 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++   + W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R+V+  E    ++E  +MF+ETSA  G N++         I
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  208 bits (531), Expect = 2e-69
 Identities = 65/161 (40%), Positives = 99/161 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R S   ++VYDV  ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V  +  +  +    + F+ETSA    N++    T+   I
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  207 bits (529), Expect = 3e-69
 Identities = 54/161 (33%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++V+D+   Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R+V  EE    +    ++F+ETSA    N++L   T+   I
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  207 bits (530), Expect = 3e-69
 Identities = 58/161 (36%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++ + + W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R+V+  E    ++E  +MF+ETSA  G N++         I
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  207 bits (529), Expect = 3e-69
 Identities = 64/161 (39%), Positives = 97/161 (60%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R+VS +  E  S   ++ ++ETSAK   N++     L   +
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  207 bits (530), Expect = 3e-69
 Identities = 59/161 (36%), Positives = 97/161 (60%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R VS E G   +  L   F E SAK   N+K     L  +I
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  206 bits (527), Expect = 4e-69
 Identities = 68/161 (42%), Positives = 106/161 (65%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+ + +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           RQVS E GE  + +  + F+ETSAKA  N++    TL   I
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  207 bits (528), Expect = 5e-69
 Identities = 64/161 (39%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   +VVYDV  ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V     +  +  L + F+ETSAK   N++    T+ + I
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  206 bits (527), Expect = 7e-69
 Identities = 58/161 (36%), Positives = 108/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V  +E  A + + N+ FIETSA    N++     + + I
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  207 bits (529), Expect = 8e-69
 Identities = 57/161 (35%), Positives = 104/161 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD++   S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V  EE +  ++E  ++F ETSA    N+      L + I
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  205 bits (525), Expect = 1e-68
 Identities = 59/161 (36%), Positives = 99/161 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ E+
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V  E+G+  + +L   F E SAK   +++     L   I
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  205 bits (524), Expect = 2e-68
 Identities = 59/151 (39%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVE 172

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  205 bits (523), Expect = 2e-68
 Identities = 62/161 (38%), Positives = 100/161 (62%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   +VVYDV S +SF+N  +W+ E+  +   DV  +LVGNK D  E+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPER 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + V  E+    + ++ +   ETSAK   N++   + +  L+
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  205 bits (523), Expect = 3e-68
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 40/190 (21%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV--------- 58
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D  +         
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65

Query: 59  ----------------------------RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90
                                       +  +WDTAGQER+ S++P Y R ++ A+VV+D
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125

Query: 91  VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150
           +++  +      W+++++    S+ II+LV NK D   K QV I E +  +++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKIS--SNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182

Query: 151 TSAKAGFNIK 160
           TSAK G NIK
Sbjct: 183 TSAKTGTNIK 192

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  203 bits (519), Expect = 5e-68
 Identities = 66/161 (40%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V+ ++GEA ++EL + FIE+SAK   N+     TL  LI
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  203 bits (520), Expect = 5e-68
 Identities = 64/162 (39%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           +R V  E+GE  ++E  + F+ETSAK G N+ L    +   +
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  204 bits (520), Expect = 1e-67
 Identities = 68/161 (42%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYDV   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V+ ++GEA ++EL + FIE+SAK   N+     TL  LI
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  203 bits (518), Expect = 1e-67
 Identities = 57/162 (35%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF S+  +Y R +   ++VYD+  +++F +  KW+  +      D  ++LVGNK D    
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146

Query: 130 RQVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCCHTLNSLI 170
           R+++ ++GE  ++++  + F E SAK  FN+      L   I
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  203 bits (518), Expect = 2e-67
 Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 2/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 70  RFRSLIPS-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
                +    ++     ++V+ V  R+SF    + +  +R  R    + ++LVGNK+DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
             R+VS+EEG   +  L+   IETSA    N +      
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  201 bits (513), Expect = 5e-67
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 8/164 (4%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V   QSF N S W  E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118

Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
            V++GNK D+  +RQVS EE +A  R+     + ETSAK   N+
Sbjct: 119 FVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  202 bits (515), Expect = 8e-67
 Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++      +  IV
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           L+GNK DL ++R+V+  +    + +  + + ETSA  G N++    TL  LI
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  201 bits (513), Expect = 9e-67
 Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE 128
           RFR+L PSY R +   ++VYDV  R +F+    W++E+ T    +D++ +LVGNK D  E
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-E 134

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162
            R+V   EG   +R+ +++FIE SAK    ++  
Sbjct: 135 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  200 bits (511), Expect = 1e-66
 Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 70  RFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD+ +  SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158
              QV  +  +  +   ++   ETSAK   +
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPND 171

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  198 bits (506), Expect = 9e-66
 Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVR 59
            K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIV 118
           LQLWDTAG ERFRSL  ++ RD+   ++++D+ + QSFLN   WI +++    S +  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           L GNK+DL ++R V  EE    + +  + + ETSA  G NI      L  LI
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  196 bits (502), Expect = 2e-65
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G 
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGS 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDL 126
            +F ++    I      ++VY + SRQS        +++   +G    + I+LVGNK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
              R+V   E EA +R     F+ETSAK   N+K     L +L 
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  196 bits (501), Expect = 3e-65
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           + YK++ LG   VGK+++   F     D       G  +  +++ ++     L ++D   
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWE 58

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDL 126
           Q+  R L    +      V+VY V  + SF   S+   ++R  R +D V I+LVGNK+DL
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           V  R+VS++EG A +   +  FIETSA    N++     +
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  194 bits (495), Expect = 4e-64
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNT--YQATIGIDFLSKTMYLED---RTVRLQLW 63
           + KL+ +G+   GKT+++ + M  K  +     AT+GID     + + D   R + L +W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 64  DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRTERGSDVIIVLVGN 122
           D AG+E F S  P ++   ++ + VYD++  Q+ ++  K W+  ++  R S   ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK-ARASSSPVILVGT 120

Query: 123 KTDLVEKRQ---VSIEEGEAKSRELNVMFI-----ETSAKAGFNIK 160
             D+ +++Q      +  +    +     I       + +    + 
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALA 166

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  194 bits (495), Expect = 4e-64
 Identities = 51/159 (32%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           +KRQVS+EE + ++ + NV ++ETSAK   N+      L
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  194 bits (496), Expect = 4e-64
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +   K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L D
Sbjct: 20  PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVD 78

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNK 123
           TAGQ+ +  L  S+I      V+VY V S  SF        ++    G   V +VLVGNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            DL  +R+V   EG+  +      F+E+SA+     +     +
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  191 bits (489), Expect = 2e-63
 Identities = 53/162 (32%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+      L
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  192 bits (491), Expect = 3e-63
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRF--MYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
           ++  S    Y++V +G+Q VGK+++   F  ++D  D+  +     D   +T+ ++  + 
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGESA 87

Query: 59  R---LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD- 114
               L +W+  G+  +  L    ++     ++VY +  R SF   S+   ++R  R ++ 
Sbjct: 88  TIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 145

Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K     +
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  189 bits (484), Expect = 9e-63
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 2/161 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           G E+F S+   YI++    ++VY + ++QSF +     D++   +  + V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L  +R+VS  EG A + E    F+ETSAK+   +      +
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  189 bits (483), Expect = 2e-62
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M         K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   L
Sbjct: 1   MPQSK---SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHL 56

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
           QL DTAGQ+ +     +Y  D +  ++VY V S +SF        ++    G   + I+L
Sbjct: 57  QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           VGNK DL  +R +S EEG+A +   N  F+E+SAK           +
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  188 bits (481), Expect = 4e-62
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 4/164 (2%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++A Y++V LGD  VGKTS+ + F   +  + +   +G D   +T+ ++     L + DT
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDT 59

Query: 66  AGQERFRSLIP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
              E+        S ++  S  V+VY +A R SF + S+   ++R    +D V I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119

Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           K DL   R+VS+EEG A +   +  FIETSA    N+      +
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGV 163

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  187 bits (477), Expect = 3e-61
 Identities = 51/158 (32%), Positives = 93/158 (58%), Gaps = 2/158 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTAGQE
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
            + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+DL +
Sbjct: 74  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           KRQVS+EE + ++ + NV ++ETSAK   N+      L
Sbjct: 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  185 bits (471), Expect = 2e-60
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 3/167 (1%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M P      +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL
Sbjct: 2   MDP-PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
            + DTAGQE F ++   Y+R     ++V+ +  RQSF    K   ++   +  D   +VL
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           VGNK DL  +RQV   E  A     +V + E SAK   N+      L
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 166

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  181 bits (461), Expect = 5e-59
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 3/167 (1%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P   L  YKLV +GD  VGK+++  +F    F + Y  TI  D   K   ++++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLV 120
           + DTAGQE F ++   Y+R     ++VY V  + SF +  ++   +   +  +   ++LV
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKLCCHTL 166
            NK DL+  R+V+ ++G+  + + N+ +IETSAK    N+    H L
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  181 bits (462), Expect = 6e-59
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F +TY  TI   +  + +  +     LQ+ DT G  
Sbjct: 9   YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSH 67

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR--TERGSDVIIVLVGNKTDLV 127
           +F ++    I      ++V+ V S+QS          +        D+ ++LVGNK D  
Sbjct: 68  QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           + R+V   E +A ++E    F+ETSAK  +N+K     L +L 
Sbjct: 128 Q-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  181 bits (461), Expect = 6e-59
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRT---VRL 60
             +  Y++V +G+Q VGK+++   F       ++    +G D   +T+ ++  +   + L
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
            +W+  G+  +  L    ++     ++VY +  R SF   S+   ++R  R ++ + I+L
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           VGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K     +
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  178 bits (453), Expect = 4e-58
 Identities = 47/161 (29%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F +    TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ ++++  + SD V +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L   R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 L-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  188 bits (478), Expect = 7e-58
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 12/168 (7%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--------EDRTV 58
           L + K+  +GD   GKTS++ + + + FD     T G++ ++K            E +  
Sbjct: 39  LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV 118
               WD  GQE   +    ++  SSV +++ D    ++  N   W+  +  + G    ++
Sbjct: 99  LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIE-KYGGKSPVI 154

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           +V NK D      +  ++   +   +   F   S K G  ++    +L
Sbjct: 155 VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  177 bits (450), Expect = 2e-57
 Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
              + +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + 
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDIL 74

Query: 64  DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
           DTAGQE + ++   Y+R     + V+ + + +SF + + + ++++  + SD V +VLVGN
Sbjct: 75  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134

Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           K DL   R V  ++    ++   + FIETSAK    ++   +TL
Sbjct: 135 KCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  175 bits (446), Expect = 1e-56
 Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
              +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + DT
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +   + ++++  + S+ V +VLVGNK 
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL   R V  ++ +  +R   + FIETSAK    +    +TL
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  173 bits (441), Expect = 4e-56
 Identities = 47/160 (29%), Positives = 91/160 (56%), Gaps = 3/160 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI   +  K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY + ++ +F +     +++   + ++ V ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKLCCHTL 166
           ++R V  E+G+  +R+  N  F+E+SAK+  N+    + L
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  173 bits (441), Expect = 8e-56
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAGQ
Sbjct: 28  EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQ 86

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E        ++R     V+VYD+  R SF       + +   +    V ++LVGNK DL 
Sbjct: 87  EDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
             RQVS EEGE  + EL   F E SA 
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSAC 172

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  171 bits (436), Expect = 4e-55
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  L  LG +  GK+++  +F+  +F + Y   +   + S    ++ + V L++ DTA  
Sbjct: 21  EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADL 79

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
           +  R+    Y+  +   +VVY V SRQSF ++S +   +     E    +  +L+GNK D
Sbjct: 80  DTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           + + RQV+  EG A +     +F E SA 
Sbjct: 139 MAQYRQVTKAEGVALAGRFGCLFFEVSAC 167

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  159 bits (405), Expect = 2e-50
 Identities = 29/155 (18%), Positives = 63/155 (40%), Gaps = 11/155 (7%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + K+  +G+ S GK++++ R++   +     +  G  F  K + ++ ++  L + D  G 
Sbjct: 20  ELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIRDEGGP 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127
              +     +       V V+ +    SF     +   + + R +  + +VLVG +  + 
Sbjct: 78  PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132

Query: 128 E--KRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
               R +        S +L    + ET A  G N+
Sbjct: 133 AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  154 bits (391), Expect = 2e-48
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 13/161 (8%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ + +L  LGD   GK+S+I RF+   +    + T   +   K M ++ +T  + + +
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES-EQYKKEMLVDGQTHLVLIRE 60

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-----VIIVL 119
            AG    +     +   +   + V+ +    SF   S+   ++ + RG       + +V 
Sbjct: 61  EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

Query: 120 VGNKTDLVEKRQVSIEEGEA-KSRELNVMFIETSAKAGFNI 159
             ++      R V      A  +      + ET A  G N+
Sbjct: 116 TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  150 bits (380), Expect = 1e-46
 Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P    DS V ++ + V +R SF N ++KW  E++         VLVG K DL + 
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLRKD 142

Query: 130 RQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
               V+ +EG+   ++L  V +IE S+ A   + 
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  137 bits (348), Expect = 6e-42
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 14/168 (8%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA    K V +GD +VGKT ++  +  + F   Y  T+  +F S  + +   TV L LWD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWD 62

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P   R + V ++ + + S+ S+ N + KWI E++      V IVLVG K
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTK 121

Query: 124 TDLVEKRQ----------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
            DL + +Q          ++  +GE   + +    +IE S+K+  N+K
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVK 169

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  135 bits (342), Expect = 8e-41
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQED 90

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P     + V ++ + + S  SF N  +KW  EVR     +  I+LVG K DL + 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                         ++  +G A ++E+  V ++E SA     +K
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  135 bits (341), Expect = 9e-41
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  +     + ++ + V L LWDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 142

Query: 128 E------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +            +  V  EEG   +  ++   ++E SAK    ++
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVR 188

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  135 bits (342), Expect = 1e-40
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           + +S     K V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L 
Sbjct: 2   SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLG 60

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLV 120
           LWDTAGQE +  L P   R + + V+ + + S+ S+ N   KW+ E+R     +V IVLV
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLV 119

Query: 121 GNKTDLVE--------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           G K DL +           ++  +GE   +++    +IE S+K   N+K
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  135 bits (341), Expect = 1e-40
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   +    + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDD 94

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P +  D+SV ++ +DV S  SF N  ++W  EV       V I++VG KTDL + 
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153

Query: 130 RQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +             V+   G+  +R +  V ++E SA+   N+ 
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  132 bits (335), Expect = 9e-40
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A  +     K V +GD +VGKTS++  +  + +   Y  T   D  S  + ++ R VRLQ
Sbjct: 13  AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQ 71

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLV 120
           L DTAGQ+ F  L P    ++ + ++ + V S  SF N   KW+ E+R        I+LV
Sbjct: 72  LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILV 130

Query: 121 GNKTDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           G ++DL E  +            V  E  +  + E+    +IE SA    N+K
Sbjct: 131 GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLK 183

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  131 bits (332), Expect = 3e-39
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ + KLV +GD + GKT ++  F  D+F   Y  T+  ++    + ++ + V L LWD
Sbjct: 21  QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWD 79

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P    D+ V ++ + V S  S  N   KW+ EV+     +V I+LV NK
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANK 138

Query: 124 TDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
            DL                 V  ++G A +  +    ++E SAK    ++
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVR 188

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  130 bits (329), Expect = 4e-39
 Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
             + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++LVG K+DL 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 124

Query: 128 E------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158
                        +  VS ++G   ++++    +IE SA    N
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  126 bits (319), Expect = 1e-37
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P     + V+++ + + S  SF N  +KW  EVR     +  I+LVG K DL + 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                         ++  +G A ++E+  V ++E SA     +K
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  126 bits (318), Expect = 2e-37
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 16/174 (9%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVL 119
            L+DTAGQE +  L P     + V ++ + V +  SF N   +W+ E++ E   +V  +L
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLL 127

Query: 120 VGNKTDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +G + DL +  +            + +E+G+  ++E+    ++E SA     +K
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 181

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  125 bits (315), Expect = 9e-37
 Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M P   + K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L
Sbjct: 21  MDPNQNV-KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIEL 78

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVL 119
            LWDT+G   + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLL 137

Query: 120 VGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158
           VG K+DL              +  VS ++G   ++++    +IE SA    N
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  123 bits (310), Expect = 5e-36
 Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 17/174 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLV 120
           LWDT+G   + ++ P    DS   ++ +D++  ++  +   KW  E+  +      ++L+
Sbjct: 79  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPSTRVLLI 137

Query: 121 GNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSAKAG-FNIK 160
           G KTDL              +  +S E+G A +++L   +++E SA     +I 
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIH 191

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 96.6 bits (240), Expect = 3e-25
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 66/220 (30%)

Query: 16  GDQSVGKTSIITRFMYDKFDNTYQATI----GIDFLSKTM--------------YLEDRT 57
           G   +GK+ +  RF+    D  +          DF  + +                +   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 58  VRLQLW-------DTAGQERFRSLIPSYIRDSSV-------------------------- 84
            ++ +        D   Q    + +  YI+ ++                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 85  -----------AVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR 130
                       ++  DV+    ++F +  K++  +  +       IV+V  K D   +R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            +      A S++ N+  +ETSA++  N+ L   TL  LI
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 95.8 bits (238), Expect = 2e-24
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 16/165 (9%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL-- 126
            +  L P     + V ++ + + S  SF +  +KW  EVR     +  I+LVG K DL  
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 273

Query: 127 --------VEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                    EK+   ++  +G A ++E+  V ++E SA     +K
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 74.0 bits (182), Expect = 5e-17
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 23/171 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------TIGIDFLSKTM-YLEDR 56
            +K+V+ G    GKT+ + +++Y K     +            T+  DFL   +  ++  
Sbjct: 14  NFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72

Query: 57  TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD------VASRQSFLNTSKWIDEVRTE 110
             R  L+   GQ  + +     +R     V V D       A+ +S  N  + + E    
Sbjct: 73  KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT 132

Query: 111 RGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIK 160
                I++ V NK DL     + +E        E     +E  A  G  + 
Sbjct: 133 LDDVPIVIQV-NKRDL--PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVF 180

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 65.0 bits (158), Expect = 9e-14
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 14/145 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           K +++ +G +  GK+SI     +    N     ++T  I    K        V  Q+WD 
Sbjct: 20  KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY---KDDISNSSFVNFQIWDF 76

Query: 66  AGQERFRSL---IPSYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLV 120
            GQ  F           R +   + V D      ++       + +           V +
Sbjct: 77  PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

Query: 121 GNKTDLV--EKRQVSIEEGEAKSRE 143
            +K D +  + +  +  +   ++ +
Sbjct: 137 -HKVDGLSDDHKIETQRDIHQRAND 160

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 65.8 bits (160), Expect = 2e-13
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 22/181 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
             KL+ +G    GK+S+ +    +          ATI ++            + L LWD 
Sbjct: 3   GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDC 59

Query: 66  AGQERF-----RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIV 118
            GQ+ F             +   V + V+DV S +   +   +   ++  R    D  I 
Sbjct: 60  GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119

Query: 119 LVGNKTDLV--EKRQVSIEEGEAKSREL-------NVMFIETSAKAGFNIKLCCHTLNSL 169
           ++ +K DLV  +KR+   +       E        N++   TS       K     + SL
Sbjct: 120 VLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSL 179

Query: 170 I 170
           I
Sbjct: 180 I 180

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T   TIG  F  +T  +  + ++ Q+WD  G 
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVET--VTYKNLKFQVWDLGGL 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
              R     Y  ++   + V D   R         I   ++E             I+V+ 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSELVAMLEEEELRKAILVVF 114

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK D+  ++ ++  E          K R+  +   +TSA  G  + 
Sbjct: 115 ANKQDM--EQAMTSSEMANSLGLPALKDRKWQIF--KTSATKGTGLD 157

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 26/165 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G  F  +   +    V ++LWD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQ 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
            RFRS+   Y R  S  V + D A ++        I+  + E        +   + ++++
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQE-------KIEASKNELHNLLDKPQLQGIPVLVL 130

Query: 121 GNKTDLVEKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
           GNK DL        + E       + RE+       S K   NI 
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCY--SISCKEKDNID 173

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K +++ LG  + GKTSI+ R        T   T+G     +T  L+ + +  ++WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLET--LQYKNISFEVWDLGGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
              R     Y  D+   + V D   R         +   + E             ++++ 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHELYALLDEDELRKSLLLIF 129

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK DL      S  E           +R   ++  ++S+K G  + 
Sbjct: 130 ANKQDL--PDAASEAEIAEQLGVSSIMNRTWTIV--KSSSKTGDGLV 172

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     T+G  F  KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKT--LEHRGFKLNIWDVGGQ 72

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A RQ   +  + +  +   ER +   +++  NK DL 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132

Query: 128 EKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
                + I+E       +S    +     SA  G ++ 
Sbjct: 133 GALSCNAIQEALELDSIRSHHWRI--QGCSAVTGEDLL 168

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNICFTVWDVGGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV 127
           ++ R L   Y +++   + V D   R+    ++  + ++  E    D ++++  NK D+ 
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM- 142

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
               + + E          +SR   V    T A  G  + 
Sbjct: 143 -PNAMPVSELTDKLGLQHLRSRTWYVQ--ATCATQGTGLY 179

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 13/158 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +   +    T G  F  K+  ++ +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKS--VQSQGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
            + R    SY  ++ + + V D A R+ F  T + + E+   E+ S V +++  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 128 EKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
                S I EG      + R   +     SA  G  ++
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQ--SCSALTGEGVQ 166

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 13/157 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ LG    GKT+I+ R    +   T + TIG  F  +T  L  + ++L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVET--LSYKNLKLNVWDLGGQT 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE 128
             R     Y  D++  + V D   +      SK +  +  E    D  +++  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ-- 131

Query: 129 KRQVSIEE-----GEAKSRELNVMFIETSAKAGFNIK 160
              +S  E        + ++ +   + +SA  G  I 
Sbjct: 132 PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG     +   +     R  +WD  GQ
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 75

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  RS   +Y  ++   +VV D   R+    T + + ++   E      +++  NK D+ 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV- 134

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            K  +++ E          K  + ++      A  G  + 
Sbjct: 135 -KECMTVAEISQFLKLTSIKDHQWHIQ--ACCALTGEGLC 171

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 57.2 bits (139), Expect = 4e-11
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 31/165 (18%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y +++   + V D   R+        ++E R E           D ++++  N
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 109

Query: 123 KTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
           K DL     ++  E          + R   +    T A +G  + 
Sbjct: 110 KQDL--PNAMNAAEITDKLGLHSLRHRNWYIQ--ATCATSGDGLY 150

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 30/161 (18%), Positives = 66/161 (40%), Gaps = 15/161 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           +  ++ LG  + GKT+II +       +     TIG  F  +    +  ++   ++D +G
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEK--FKSSSLSFTVFDMSG 76

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE---RGSDVIIVLVGNKT 124
           Q R+R+L   Y ++    + V D + R   +   + +D +      +   + I+   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136

Query: 125 DLVEKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
           DL +      + +       K +  ++    + A  G  ++
Sbjct: 137 DLRDAVTSVKVSQLLCLENIKDKPWHIC--ASDAIKGEGLQ 175

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+       T+     S+   L    +    +D  G 
Sbjct: 25  TGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEE--LTIAGMTFTTFDLGGH 79

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
            + R +  +Y+   +  V + D A  +  L + + +D +   E  ++V I+++GNK D 
Sbjct: 80  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 56.9 bits (138), Expect = 9e-11
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG     +   +     R  +WD  GQ
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  RS   +Y  ++   +VV D   R+    T + + ++   E      +++  NK D+ 
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV- 129

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            K  +++ E          K  + ++      A  G  + 
Sbjct: 130 -KECMTVAEISQFLKLTSIKDHQWHIQ--ACCALTGEGLC 166

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAG 67
           +  ++F+G    GKT +  R +  ++ +T Q +I     S       +R   L L D  G
Sbjct: 7   QRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPG 63

Query: 68  QERFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-----VRTERGSDVIIVLV- 120
            E  R  L+  +   +   V V D A+ Q  +      +      + +    +   +L+ 
Sbjct: 64  HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLIA 121

Query: 121 GNKTDL 126
            NK D+
Sbjct: 122 CNKQDI 127

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KL+FLG  + GKT+++     D+     Q T      S+   L    ++   +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEE--LAIGNIKFTTFDLGGH 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
            + R L   Y  + +  V + D A  +         DE R E           DV  V++
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADPE-------RFDEARVELDALFNIAELKDVPFVIL 130

Query: 121 GNKTDL 126
           GNK D 
Sbjct: 131 GNKIDA 136

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 23/130 (17%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVK 103

Query: 71  FRSLIPSYIRDSSVAV--VVYDVASRQSFLNTSKWIDEVRTE----------RGSDVIIV 118
            R  +  Y++  +  V  +++ V S        K +                   + I +
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDS----TVDPKKLTTTAEFLVDILSITESSCENGIDI 159

Query: 119 LV-GNKTDLV 127
           L+  NK++L 
Sbjct: 160 LIACNKSELF 169

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            +  ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G
Sbjct: 11  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPG 64

Query: 68  QERFRSLIPSYIRDSSVAV--VVY--DVASRQSFLNTSK-------WIDEVRTERGSDVI 116
             + R  +  Y++  +  V  +++  D       L T+         I E   E G D++
Sbjct: 65  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124

Query: 117 IVLVGNKTDLV 127
           I    NK++L 
Sbjct: 125 I--ACNKSELF 133

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQ 219

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
           ++ R L   Y +++   + V D   R+        ++E R E           D ++++ 
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRE-------RVNEAREELMRMLAEDELRDAVLLVF 272

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK DL     ++  E          + R  N     T A +G  + 
Sbjct: 273 ANKQDL--PNAMNAAEITDKLGLHSLRHR--NWYIQATCATSGDGLY 315

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           ++ +G +  GK+SI  + ++           ++T        +       + L + +  G
Sbjct: 2   VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55

Query: 68  QERFRSL---IPSYIRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
           Q  +           +     V V D      + +     I E   +    + I ++ +K
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Query: 124 TDLVE-----------KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            D +             ++   E  E     + V F  TS       +     +  LI
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLI 173

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 20/114 (17%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV 107
           + L + DTAG        ER    R+     I  +   + + D  +    ++ ++   E 
Sbjct: 52  MPLHIIDTAGLREASDEVERIGIERAW--QEIEQADRVLFMVD-GTTTDAVDPAEIWPEF 108

Query: 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161
                + + I +V NK D+  +     E             I  SA+ G  + +
Sbjct: 109 IARLPAKLPITVVRNKADITGETLGMSEVNGHA-------LIRLSARTGEGVDV 155

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 17/114 (14%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV 107
              +L DTAG        E     RS     + ++ + + + D+ + +     ++  +  
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRRSR--MKMAEADLILYLLDLGTERLDDELTEIRELK 338

Query: 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161
                +  + V   NK D             A +       I  SA  G  I  
Sbjct: 339 AAHPAAKFLTVA--NKLDRAANAD---ALIRAIADGTGTEVIGISALNGDGIDT 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.98
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.98
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.98
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.97
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.97
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.96
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.96
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.95
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.95
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.94
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.94
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.93
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.92
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.92
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.91
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.91
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.9
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.9
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.9
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.9
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.9
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.9
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.9
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.9
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.9
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.89
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.89
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.89
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.88
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.88
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.88
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.87
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.87
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.87
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.86
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.85
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.85
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.85
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.84
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.84
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.82
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.82
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.81
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.81
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.81
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.81
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.8
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.8
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.78
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.73
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.71
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.69
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.69
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.67
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.62
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.61
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.59
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.58
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.57
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.57
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.57
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.53
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.5
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.48
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.42
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.38
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.36
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.09
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.07
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.02
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.93
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.92
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.92
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.92
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.88
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.68
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.65
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.56
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.46
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.45
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.41
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.34
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.3
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.19
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.19
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.14
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.03
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.91
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.82
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.72
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.71
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.67
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.67
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.6
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.59
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.58
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.58
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.57
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.54
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.51
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.51
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.5
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.5
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.49
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.49
2xxa_A	433	Signal recognition particle protein; protein trans	97.49
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.48
1via_A	175	Shikimate kinase; structural genomics, transferase	97.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.45
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.44
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.44
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.43
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.43
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.43
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.41
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.39
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.38
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.38
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.37
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.35
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.34
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.32
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.32
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.3
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.3
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.3
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.3
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.28
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.28
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.27
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.27
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.27
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.26
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.26
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.26
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.26
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.26
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.25
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.25
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.25
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.25
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.25
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.25
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.25
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.25
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.25
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.25
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.24
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.24
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.23
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.23
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.22
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.22
1g6h_A	257	High-affinity branched-chain amino acid transport	97.22
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.21
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.21
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.21
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.21
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.21
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.2
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.2
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.2
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.2
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.19
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.19
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.19
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.19
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.18
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.18
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.17
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.17
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.16
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.16
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.16
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.15
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.14
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.14
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.14
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.14
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.14
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.14
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.13
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.13
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.12
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.12
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.12
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.11
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.11
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.11
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.1
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.1
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.08
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.07
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.06
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.05
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.05
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.04
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.04
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.03
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.0
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.0
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.0
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.99
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.99
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.98
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.97
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.97
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.96
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.96
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.96
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.95
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.95
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.95
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.95
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.95
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.95
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.95
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.95
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.94
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.94
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.94
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.94
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.93
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.93
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.92
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.92
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.92
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.92
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.92
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.91
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.91
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.9
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.89
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.89
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.89
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.88
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.88
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.88
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.88
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.88
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.87
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.87
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.85
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.83
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.81
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.81
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.8
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.8
3co5_A	143	Putative two-component system transcriptional RES	96.79
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.74
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.74
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.74
3bos_A	242	Putative DNA replication factor; P-loop containing	96.73
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.73
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.72
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.71
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.7
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.7
2og2_A	359	Putative signal recognition particle receptor; nuc	96.69
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.69
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.69
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.68
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.68
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.67
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.65
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.65
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.65
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.64
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.64
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.58
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.58
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.57
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.56
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.55
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.54
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.52
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.52
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.51
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.49
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.46
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.46
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.46
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.46
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.45
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.45
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.43
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.42
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.42
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.42
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.42
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.4
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.38
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.38
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.37
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.36
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.36
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.35
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.33
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.33
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.32
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.24
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.23
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.21
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.2
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.2
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.19
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.18
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.17
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.16
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.16
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.15
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.15
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.14
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.14
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.14
2qgz_A	308	Helicase loader, putative primosome component; str	96.14
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.14
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.12
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.12
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.1
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.1
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.1
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.07
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.06
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.05
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.04
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.02
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.98
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.97
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.96
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.92
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.91
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.9
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.89
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.86
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.85
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.85
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.84
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.82
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.81
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.8
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.8
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.8

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=9e-43  Score=243.12  Aligned_cols=166  Identities=77%  Similarity=1.159  Sum_probs=147.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.+||+|+|++|||||||+++|+.+.+...+.+|.+.++.......++..+.+.+|||+|+++|..++..|++++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++++|+.+..|+..+....++++|+++|+||+|+.+.+++..+++++++++++++|++|||++|.||+++|..|
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999998888899999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      ++.+..
T Consensus       171 ~~~i~~  176 (216)
T 4dkx_A          171 AAALPG  176 (216)
T ss_dssp             HHHC--
T ss_pred             HHHHHh
Confidence            887753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=4.4e-37  Score=210.87  Aligned_cols=168  Identities=36%  Similarity=0.664  Sum_probs=150.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            34579999999999999999999999888777788888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      |+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+...+.+.++..++++++++||++|.|++++|.+
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  177 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877778999999999999877788888999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 030524          166 LNSLITVC  173 (175)
Q Consensus       166 l~~~~~~~  173 (175)
                      |.+.+..+
T Consensus       178 l~~~i~~~  185 (191)
T 2a5j_A          178 TAKEIYRK  185 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-37  Score=213.39  Aligned_cols=167  Identities=38%  Similarity=0.624  Sum_probs=154.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++|
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            35699999999999999999999999888888888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++...+++++++||++|.|++++|.++
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  183 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988777789999999999998778888889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+..+
T Consensus       184 ~~~i~~~  190 (201)
T 2ew1_A          184 ACRLISE  190 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=3.4e-37  Score=208.81  Aligned_cols=168  Identities=33%  Similarity=0.611  Sum_probs=154.3

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      .....++|+++|++|+|||||+++++++.+...+.++.+.++.......++..+.+.+||+||++++...+..+++++|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            34467999999999999999999999998887788888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      +|+|||++++.+++.+..|+..+......+.|+++++||+|+.+++.....+.++++..++++++++||++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999888777899999999999987788888899999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 030524          165 TLNSLITV  172 (175)
Q Consensus       165 ~l~~~~~~  172 (175)
                      ++.+.+..
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99988754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.1e-36  Score=208.49  Aligned_cols=168  Identities=37%  Similarity=0.665  Sum_probs=154.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            35699999999999999999999999888788888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+.++++..++++++++||++|.|++++|++|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  179 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL  179 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777888889999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q 030524          167 NSLITVCI  174 (175)
Q Consensus       167 ~~~~~~~~  174 (175)
                      .+.+..+.
T Consensus       180 ~~~i~~~~  187 (189)
T 2gf9_A          180 VDVICEKM  187 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.7e-37  Score=211.28  Aligned_cols=167  Identities=41%  Similarity=0.686  Sum_probs=125.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            45699999999999999999999988877788888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...+++.++..++++++++||++|.|++++|.+|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  165 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  165 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777888899999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+..+
T Consensus       166 ~~~i~~~  172 (183)
T 2fu5_C          166 ARDIKAK  172 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=213.74  Aligned_cols=167  Identities=40%  Similarity=0.696  Sum_probs=146.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            45699999999999999999999998887778888888888888888988899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||++++++++.+..|+..+......++|+++|+||+|+.+.+.+...++++++..+++ +++++||++|+|++++|.+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  186 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR  186 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999888777899999999999987778888999999999999 9999999999999999999


Q ss_pred             HHHHHhhh
Q 030524          166 LNSLITVC  173 (175)
Q Consensus       166 l~~~~~~~  173 (175)
                      |.+.+..+
T Consensus       187 l~~~i~~~  194 (201)
T 2hup_A          187 VATELIMR  194 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=208.98  Aligned_cols=166  Identities=39%  Similarity=0.671  Sum_probs=156.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|+
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   94 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   94 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence            46999999999999999999999998888888999889998999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++.+++.+..|+..+......++|+++|+||+|+.+.+.....+.+.++..++++++++||++|.|++++|.+|.
T Consensus        95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A           95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988888899999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 030524          168 SLITVC  173 (175)
Q Consensus       168 ~~~~~~  173 (175)
                      +.+...
T Consensus       175 ~~i~~~  180 (196)
T 3tkl_A          175 AEIKKR  180 (196)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.1e-36  Score=211.05  Aligned_cols=167  Identities=39%  Similarity=0.631  Sum_probs=155.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            45799999999999999999999999888888888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..++..++++++++||++|.|++++|.+|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  165 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM  165 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988777789999999999998877888889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+...
T Consensus       166 ~~~i~~~  172 (206)
T 2bcg_Y          166 ARQIKES  172 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=8.3e-37  Score=208.34  Aligned_cols=167  Identities=35%  Similarity=0.605  Sum_probs=154.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45699999999999999999999999888888888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++++++.+..|+..+......+.|+++++||+|+.+++.....+...++...+++++++||++|.|++++|+++
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  167 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  167 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999888777789999999999998777888889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+..+
T Consensus       168 ~~~~~~~  174 (186)
T 2bme_A          168 ARKILNK  174 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=5.2e-37  Score=206.37  Aligned_cols=166  Identities=37%  Similarity=0.642  Sum_probs=146.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            45799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......+.|+++++||+|+.+++.+...+.+.++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999887766789999999999998878888889999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+..
T Consensus       164 ~~~~~~  169 (170)
T 1z08_A          164 CKRMIE  169 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=5.3e-37  Score=206.10  Aligned_cols=165  Identities=38%  Similarity=0.748  Sum_probs=152.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++++++.+...+.++.+.++.......++..+.+.+||+||++++...+..++.++|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            35799999999999999999999998888778888888888888888988999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+.....+++|+++++||+|+.+++.....+...++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988877889999999999998777888889999999999999999999999999999999


Q ss_pred             HHHHh
Q 030524          167 NSLIT  171 (175)
Q Consensus       167 ~~~~~  171 (175)
                      .+.+.
T Consensus       164 ~~~~~  168 (170)
T 1r2q_A          164 AKKLP  168 (170)
T ss_dssp             HHTSC
T ss_pred             HHHHh
Confidence            88764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.4e-36  Score=206.33  Aligned_cols=167  Identities=37%  Similarity=0.683  Sum_probs=153.2

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            34679999999999999999999999988877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      |+|||++++.+++.+..|+..+.....++.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|.+
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998887678999999999999877888889999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030524          166 LNSLITV  172 (175)
Q Consensus       166 l~~~~~~  172 (175)
                      |.+.+..
T Consensus       169 l~~~~~~  175 (181)
T 2efe_B          169 IARRLPR  175 (181)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHHh
Confidence            9987654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=6.9e-37  Score=207.97  Aligned_cols=168  Identities=31%  Similarity=0.406  Sum_probs=151.1

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      |+..+.++|+++|++|+|||||+++|+.+.+...+.++.+.++ ......++..+.+.+||+||++++...+..++.++|
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   79 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN   79 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCS
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCC
Confidence            3455689999999999999999999998888888888887666 677778898999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      ++++|||++++++++.+..|+..+..... .++|+++|+||+|+.+++.+...+++.++..++++++++||++|.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  159 (181)
T 3t5g_A           80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV  159 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999999877654 58999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 030524          163 CHTLNSLITV  172 (175)
Q Consensus       163 f~~l~~~~~~  172 (175)
                      |.++.+.+..
T Consensus       160 ~~~l~~~~~~  169 (181)
T 3t5g_A          160 FRRIILEAEK  169 (181)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=7.7e-37  Score=205.33  Aligned_cols=164  Identities=43%  Similarity=0.755  Sum_probs=151.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .+++|+++|++|+|||||+++++++.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999998888888888888888888889989999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---CCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      |||++++.+++.+..|+..+......+.|+++++||+|+.+.   +++...+.+.++..++++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887778999999999998765   67788888999999999999999999999999999


Q ss_pred             HHHHHHh
Q 030524          165 TLNSLIT  171 (175)
Q Consensus       165 ~l~~~~~  171 (175)
                      +|.+.+.
T Consensus       162 ~l~~~i~  168 (170)
T 1ek0_A          162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHh
Confidence            9988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.2e-36  Score=205.85  Aligned_cols=167  Identities=31%  Similarity=0.517  Sum_probs=151.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      .....+||+++|++|+|||||+++++++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345679999999999999999999999888888888877555 6777788988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccC-CCCCHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKLC  162 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~v~~~  162 (175)
                      +++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...+++.++..++++++++||+ +|.|++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence            9999999999999999999999877543 789999999999998888999999999999999999999999 99999999


Q ss_pred             HHHHHHHHhh
Q 030524          163 CHTLNSLITV  172 (175)
Q Consensus       163 f~~l~~~~~~  172 (175)
                      |++|.+.+..
T Consensus       173 ~~~l~~~i~~  182 (183)
T 3kkq_A          173 FHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.2e-37  Score=210.36  Aligned_cols=170  Identities=35%  Similarity=0.602  Sum_probs=147.7

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      .+....++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            34456799999999999999999999998887778888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~  162 (175)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++...+.+.++... +++++++||++|+|++++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999888877678999999999999877888888888999885 789999999999999999


Q ss_pred             HHHHHHHHhhh
Q 030524          163 CHTLNSLITVC  173 (175)
Q Consensus       163 f~~l~~~~~~~  173 (175)
                      |++|.+.+..+
T Consensus       181 ~~~l~~~i~~~  191 (192)
T 2il1_A          181 FLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=3e-36  Score=208.44  Aligned_cols=167  Identities=35%  Similarity=0.632  Sum_probs=154.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            45699999999999999999999999888888888888888888888988999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+.+.++..++++++++||++|.|++++|++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  165 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998878888899999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+..+
T Consensus       166 ~~~i~~~  172 (203)
T 1zbd_A          166 VDVICEK  172 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.4e-36  Score=202.99  Aligned_cols=165  Identities=36%  Similarity=0.668  Sum_probs=153.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|++|+|||||+++++++.+...+.++.+.++.......++....+.+||+||++++...+..++.++|++|
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45699999999999999999999999888888888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+.....+..|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|.+|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988767889999999999998878888889999999999999999999999999999999


Q ss_pred             HHHHh
Q 030524          167 NSLIT  171 (175)
Q Consensus       167 ~~~~~  171 (175)
                      .+.+.
T Consensus       164 ~~~i~  168 (170)
T 1z0j_A          164 SRRIP  168 (170)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            88764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.3e-36  Score=203.72  Aligned_cols=168  Identities=38%  Similarity=0.669  Sum_probs=145.3

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      ....++|+++|++|+|||||+++|++..+. ..+.++.+.++.......++..+.+.+||+||++++...+..++.++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            346799999999999999999999998875 4677888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      +|+|||++++.+++.+..|+..+......+.|+++++||+|+.+++.....+.+.++..++++++++||++|.|++++|+
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999988788888899999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 030524          165 TLNSLITVC  173 (175)
Q Consensus       165 ~l~~~~~~~  173 (175)
                      ++.+.+...
T Consensus       167 ~l~~~~~~~  175 (180)
T 2g6b_A          167 AIAKELKRR  175 (180)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999887643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=207.02  Aligned_cols=167  Identities=32%  Similarity=0.622  Sum_probs=154.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.++.......++..+.+.+||+||++++...+..++.++|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            34699999999999999999999999888788888888888888888888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+++.++...+++++++||++|.|++++|.+|
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  182 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV  182 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766789999999999998777888889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+..+
T Consensus       183 ~~~i~~~  189 (193)
T 2oil_A          183 LKEIFAK  189 (193)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.2e-36  Score=203.28  Aligned_cols=166  Identities=37%  Similarity=0.670  Sum_probs=151.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.....+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            45699999999999999999999999888888888888888888889999899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.....+...++...+++++++||++|.|++++|+++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI  165 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999988765 589999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+...
T Consensus       166 ~~~~~~~  172 (181)
T 3tw8_B          166 TELVLRA  172 (181)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=209.98  Aligned_cols=167  Identities=35%  Similarity=0.616  Sum_probs=144.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999998887778888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...++..++...+++++++||++|.|++++|.+|
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  182 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  182 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777888889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+..+
T Consensus       183 ~~~i~~~  189 (200)
T 2o52_A          183 ARTILNK  189 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.2e-36  Score=206.48  Aligned_cols=173  Identities=37%  Similarity=0.594  Sum_probs=152.4

Q ss_pred             CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEE-EEEEEECCe---------EEEEEEEeCCCccc
Q 030524            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER   70 (175)
Q Consensus         1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~   70 (175)
                      |++......++|+++|++|+|||||+++|+++.+...+.++.+.++. ......++.         .+.+.+||+||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            34334456799999999999999999999998888788888887777 556666655         78999999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI  149 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (175)
                      +...+..++.++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.....+++.++..++++++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999999999999988765 6899999999999987778888899999999999999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhhh
Q 030524          150 ETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      ++||++|.|++++|.+|.+.+...
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.8e-36  Score=205.19  Aligned_cols=166  Identities=79%  Similarity=1.169  Sum_probs=153.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ..+++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999998888888888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+.++++....+.+.++...+++++++||++|.|++++|++|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988777789999999999998878888889999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+..
T Consensus       172 ~~~~~~  177 (179)
T 2y8e_A          172 AAALPG  177 (179)
T ss_dssp             HHTCC-
T ss_pred             HHHHhh
Confidence            887653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.2e-36  Score=203.23  Aligned_cols=165  Identities=40%  Similarity=0.722  Sum_probs=145.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            45899999999999999999999998888888888888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++.+++.+..|+..+......+.|+++++||+|+ ..+.....+.+.++..++++++++||++|.|++++|.+|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998887778999999999998 4566778888999999999999999999999999999999


Q ss_pred             HHHhhh
Q 030524          168 SLITVC  173 (175)
Q Consensus       168 ~~~~~~  173 (175)
                      +.+..+
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.9e-36  Score=202.23  Aligned_cols=165  Identities=35%  Similarity=0.594  Sum_probs=152.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            35799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++++++.+..|+..+.... .+.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999988776 689999999999998777888889999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+..
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-36  Score=207.70  Aligned_cols=166  Identities=36%  Similarity=0.681  Sum_probs=152.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||+++|+++.+...+.++.+.++.......++....+.+||+||++++...+..++.++|++|
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45799999999999999999999999887788888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+.++++..++++++++||++|.|++++|++|
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777888899999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+..
T Consensus       181 ~~~i~~  186 (192)
T 2fg5_A          181 SRQIPP  186 (192)
T ss_dssp             HHTCC-
T ss_pred             HHHHHh
Confidence            987754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=208.26  Aligned_cols=169  Identities=25%  Similarity=0.341  Sum_probs=144.9

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCC
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDS   82 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~   82 (175)
                      .+....++|+++|++|||||||+++|++........++.+.+.....+.+++..+.+.+||++|++.+.. ++..++.++
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            3445679999999999999999999986544434455566677777778899999999999999988765 777888999


Q ss_pred             cEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      |++|+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+.+...+++.++..++++++++||++|.|+++
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~  177 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  177 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence            999999999999999999999999887654 5899999999999987788888899999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 030524          162 CCHTLNSLITV  172 (175)
Q Consensus       162 ~f~~l~~~~~~  172 (175)
                      +|.++.+.+..
T Consensus       178 lf~~l~~~i~~  188 (195)
T 3cbq_A          178 LFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-37  Score=212.35  Aligned_cols=167  Identities=35%  Similarity=0.647  Sum_probs=155.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|++|+|||||+++|+++.+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|++|+
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL  101 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence            56999999999999999999999988888888888888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+.+.++..++++++++||++|.|++++|++|.
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999887777899999999999988888899999999999999999999999999999999999


Q ss_pred             HHHhhhh
Q 030524          168 SLITVCI  174 (175)
Q Consensus       168 ~~~~~~~  174 (175)
                      +.+..+.
T Consensus       182 ~~i~~~~  188 (191)
T 3dz8_A          182 DAICDKM  188 (191)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9887653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-36  Score=211.35  Aligned_cols=167  Identities=34%  Similarity=0.636  Sum_probs=145.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45699999999999999999999999888788888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+.+.+++...++..++..++++++++||++|.|++++|++|
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  170 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL  170 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777888889999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+...
T Consensus       171 ~~~i~~~  177 (223)
T 3cpj_B          171 INTIYQK  177 (223)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHH
Confidence            9888654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=209.84  Aligned_cols=169  Identities=39%  Similarity=0.618  Sum_probs=140.4

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      .....++|+++|++|+|||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..++.++|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34467999999999999999999999998877778888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC------CCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV------EKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                      +|+|||++++.+++.+..|+..+......++|+++|+||+|+.      ..+.+...+++.++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999998887766789999999999986      3567778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030524          159 IKLCCHTLNSLITVC  173 (175)
Q Consensus       159 v~~~f~~l~~~~~~~  173 (175)
                      ++++|.+|.+.+..+
T Consensus       184 v~el~~~l~~~i~~~  198 (199)
T 2p5s_A          184 IVEAVLHLAREVKKR  198 (199)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=4e-36  Score=205.70  Aligned_cols=167  Identities=34%  Similarity=0.580  Sum_probs=148.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCCcE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV   84 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~   84 (175)
                      ..+.+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++. ..+..+++++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3467999999999999999999999998888888888888888888889988999999999999998 888999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC---CCHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG---FNIK  160 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~v~  160 (175)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++...+.+.++..++++++++||++|   +|+.
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999998876 468999999999999877788889999999999999999999999   9999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++|.+|.+.+..
T Consensus       177 ~l~~~l~~~i~~  188 (189)
T 1z06_A          177 AIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHHHHHhh
Confidence            999999887643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.1e-36  Score=204.87  Aligned_cols=168  Identities=32%  Similarity=0.479  Sum_probs=149.5

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      ....++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++ ..+.+.+||+||++.+...+..++.++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999999887777778888788888888876 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~-~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      +|+|||++++++++.+..|+..+.....  .+.| +++|+||+|+.+.+.....+.+.++..++++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999988877532  2455 889999999987778888899999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030524          162 CCHTLNSLITVC  173 (175)
Q Consensus       162 ~f~~l~~~~~~~  173 (175)
                      +|++|.+.+...
T Consensus       163 l~~~l~~~~~~~  174 (178)
T 2hxs_A          163 CFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999887653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=206.01  Aligned_cols=167  Identities=25%  Similarity=0.383  Sum_probs=143.6

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      +.....+||+++|++|+|||||+++++++.+...+.++.+..+ .....+++..+.+.+||++|++++... ..++.++|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            3445679999999999999999999999988888888877554 456678888899999999999988875 67899999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEecc-CCCCCH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA-KAGFNI  159 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~v  159 (175)
                      ++|+|||++++++++.+..|+..+.....   .++|+++|+||+|+.+.+.+...++.+++..++++++++|| ++|.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            99999999999999999999999887642   58999999999999877888899999999999999999999 899999


Q ss_pred             HHHHHHHHHHHhh
Q 030524          160 KLCCHTLNSLITV  172 (175)
Q Consensus       160 ~~~f~~l~~~~~~  172 (175)
                      +++|+++.+.+..
T Consensus       174 ~~lf~~l~~~i~~  186 (187)
T 3c5c_A          174 QHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=5.6e-36  Score=201.21  Aligned_cols=164  Identities=26%  Similarity=0.369  Sum_probs=135.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCCcEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV   87 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   87 (175)
                      .+||+++|++|+|||||++++++........++.+.+.....+..++..+.+.+||++|++++.. .+..++.++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            48999999999999999999998776666666666778888888999999999999999998876 77778899999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++++++.+..|+..+..... .++|+++++||+|+.+.+.+...+.+.++..++++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999988765 589999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=7.4e-36  Score=202.51  Aligned_cols=167  Identities=31%  Similarity=0.453  Sum_probs=149.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....++|+++|++|+|||||+++|+++.+...+.++.+..+. .....++..+.+.+||+||++++...+..++.++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            456799999999999999999999999887787888776554 6677888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      ++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+++...+.+.++...+++++++||++|.|++++|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  164 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  164 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999986554 46899999999999988788888899999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 030524          165 TLNSLITVC  173 (175)
Q Consensus       165 ~l~~~~~~~  173 (175)
                      +|.+.+...
T Consensus       165 ~l~~~~~~~  173 (181)
T 2fn4_A          165 QLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=209.20  Aligned_cols=169  Identities=31%  Similarity=0.419  Sum_probs=145.1

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      |+..+.+||+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++++...+..++.++|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            5556789999999999999999999999988888888877555 556666777788999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      ++|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...+.+.++..++++++++||++|.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999887644 57999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 030524          163 CHTLNSLITVC  173 (175)
Q Consensus       163 f~~l~~~~~~~  173 (175)
                      |.+|.+.+...
T Consensus       178 ~~~l~~~i~~~  188 (201)
T 3oes_A          178 FTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999987653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.9e-35  Score=200.02  Aligned_cols=167  Identities=37%  Similarity=0.591  Sum_probs=147.5

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            34579999999999999999999999988888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCCCHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~  160 (175)
                      ++|||++++.+++.+..|+..+.....    .+.|+++++||+|+. .++....+...++. ..+++++++||++|.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999999887654    678999999999986 56677888888888 567899999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      ++|+++.+.+...
T Consensus       163 ~l~~~l~~~~~~~  175 (177)
T 1wms_A          163 AAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.1e-35  Score=203.91  Aligned_cols=168  Identities=38%  Similarity=0.630  Sum_probs=149.6

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeE--------------------------
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT--------------------------   57 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   57 (175)
                      |+....++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            455678999999999999999999999998888888888878777777766654                          


Q ss_pred             -----------EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524           58 -----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (175)
Q Consensus        58 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~  126 (175)
                                 ..+.+||+||++.+...+..++.++|++|+|||++++.+++.+..|+..+....+  .|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-
Confidence                       7899999999999999999999999999999999999999999999999987753  99999999999 


Q ss_pred             CCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhhhh
Q 030524          127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCI  174 (175)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~~  174 (175)
                      ...+.....+++.++..++++++++||++|.|++++|.+|.+.+..++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            556778889999999999999999999999999999999999887664

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=9.8e-36  Score=199.45  Aligned_cols=165  Identities=33%  Similarity=0.555  Sum_probs=145.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      +..++|+++|++|+|||||+++++++.+...+.++.+..+ ......++..+.+.+||+||++++...+..++.++|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            3579999999999999999999999887777777766443 455677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||++++++++.+..|+..+..... .+.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999999988765 58999999999999877788889999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030524          166 LNSLITV  172 (175)
Q Consensus       166 l~~~~~~  172 (175)
                      +.+.+..
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-35  Score=204.84  Aligned_cols=170  Identities=32%  Similarity=0.433  Sum_probs=147.6

Q ss_pred             CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 030524            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (175)
Q Consensus         2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (175)
                      +.|.....++|+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++. ...+..++.+
T Consensus        21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~   98 (196)
T 2atv_A           21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRW   98 (196)
T ss_dssp             ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred             hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence            455666789999999999999999999999988777777776444 55567788889999999999988 7788889999


Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC-CH
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NI  159 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v  159 (175)
                      +|++|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+++...+++.++..++++++++||++|. |+
T Consensus        99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi  178 (196)
T 2atv_A           99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI  178 (196)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence            9999999999999999999999998887654 689999999999998778888899999999999999999999999 99


Q ss_pred             HHHHHHHHHHHhhh
Q 030524          160 KLCCHTLNSLITVC  173 (175)
Q Consensus       160 ~~~f~~l~~~~~~~  173 (175)
                      +++|++|.+.+..+
T Consensus       179 ~~l~~~l~~~i~~~  192 (196)
T 2atv_A          179 TEIFYELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-35  Score=203.97  Aligned_cols=169  Identities=25%  Similarity=0.433  Sum_probs=146.9

Q ss_pred             CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 030524            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (175)
Q Consensus         2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (175)
                      ++++....++|+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++.+
T Consensus        11 ~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   89 (194)
T 2atx_A           11 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   89 (194)
T ss_dssp             SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence            344445679999999999999999999999887777777776443 4566677888899999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-e
Q 030524           82 SSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-M  147 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~  147 (175)
                      +|++|+|||++++++++.+. .|+..+.... +++|+++|+||+|+.+.            +.+...++..++..+++ +
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  168 (194)
T 2atx_A           90 TDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  168 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence            99999999999999999987 7888887764 48999999999999653            46778889999999998 9


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          148 FIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       148 ~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++++||++|.|++++|+++.+.+..
T Consensus       169 ~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          169 YVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999988753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.3e-35  Score=198.84  Aligned_cols=163  Identities=30%  Similarity=0.514  Sum_probs=145.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.++|+++|++|+|||||+++++++.+...+.++.+..+ ......++..+.+.+||+||++++...+..++.++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887777777776444 4556678888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      |||++++.+++.+..|+..+..... .+.|+++++||+|+.+++.....+...++..+ +++++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            9999999999999999998887643 68999999999999887888888999999888 789999999999999999999


Q ss_pred             HHHHHh
Q 030524          166 LNSLIT  171 (175)
Q Consensus       166 l~~~~~  171 (175)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.1e-35  Score=207.43  Aligned_cols=168  Identities=27%  Similarity=0.441  Sum_probs=145.8

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      .+....+||+++|++|+|||||+++|+++.+...+.++.+.++ .....+++..+.+.+||++|++++...+..++.++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3445679999999999999999999999988888888887655 456667788889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEE
Q 030524           84 VAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFI  149 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~  149 (175)
                      ++|+|||++++++++. +..|+..+.... ++.|+++|+||+|+.++            +.+...++..++..+++ +++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999999 788999888775 58999999999999753            67889999999999999 999


Q ss_pred             EeccCCCCC-HHHHHHHHHHHHhhh
Q 030524          150 ETSAKAGFN-IKLCCHTLNSLITVC  173 (175)
Q Consensus       150 ~~s~~~~~~-v~~~f~~l~~~~~~~  173 (175)
                      +|||++|.| ++++|+++.+.+...
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             EeccCCCcccHHHHHHHHHHHHhcc
Confidence            999999998 999999999887653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=3.6e-35  Score=200.37  Aligned_cols=163  Identities=18%  Similarity=0.302  Sum_probs=143.2

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      +.....+||+++|++|+|||||+++++.+.+...+.++.  ..+...+.+++..+.+.+||++|++.+.     ++.++|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            345678999999999999999999999998877777763  3445778889999999999999998876     788899


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI  159 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v  159 (175)
                      ++++|||++++.+|+.+..|+..+..... .++|+++++||+|+.  ..+.+...+++.++..++ ++++++||++|.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999987754 679999999999984  567788899999999997 89999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 030524          160 KLCCHTLNSLITVC  173 (175)
Q Consensus       160 ~~~f~~l~~~~~~~  173 (175)
                      +++|+++.+.+...
T Consensus       168 ~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          168 ERVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.4e-35  Score=200.95  Aligned_cols=168  Identities=32%  Similarity=0.536  Sum_probs=148.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +....++|+++|++|+|||||+++|+++.+...+.++.+.. ....+..++..+.+.+||+||++++...+..++.++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            34567999999999999999999999988777777776644 34556778888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      +++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.++....+.+.++..++++++++|+++|.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999999988765 589999999999998777888899999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      ++|.+.+...
T Consensus       173 ~~l~~~i~~~  182 (187)
T 2a9k_A          173 FDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.4e-35  Score=203.83  Aligned_cols=166  Identities=41%  Similarity=0.713  Sum_probs=150.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            34699999999999999999999998888888888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.....+.+.++..++++++++||++|.|++++|.+|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999998877678999999999998 556677888889999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+...
T Consensus       177 ~~~~~~~  183 (213)
T 3cph_A          177 AKLIQEK  183 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2e-35  Score=200.57  Aligned_cols=168  Identities=36%  Similarity=0.578  Sum_probs=135.0

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      ....++|+++|++|+|||||++++++..+...+.++.+.++....+..+ +....+.+||+||++.+...+..++.++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4567999999999999999999999998888888888878887777776 556789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-hcCCeEEEeccCCCCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFN  158 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~  158 (175)
                      +|+|||++++.+++.+..|+..+.....    .+.|+++++||+|+.+ .+.....+...++. ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999999887754    6899999999999853 45567888888888 5678999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030524          159 IKLCCHTLNSLITVC  173 (175)
Q Consensus       159 v~~~f~~l~~~~~~~  173 (175)
                      ++++|++|.+.+...
T Consensus       165 i~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          165 VDTAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4.8e-35  Score=201.09  Aligned_cols=166  Identities=31%  Similarity=0.468  Sum_probs=146.7

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....+||+++|++|+|||||+++++++.+...+.++.+.++. .....++..+.+.+||+||++++...+..++.++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            346799999999999999999999999888788888875554 4667888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHhcCCe-EEEeccCCCCCHHH
Q 030524           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELNVM-FIETSAKAGFNIKL  161 (175)
Q Consensus        86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~  161 (175)
                      |+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.++  +.+...+++.++..+++. ++++||++|.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999997 66777776554 68999999999998753  678889999999999997 99999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030524          162 CCHTLNSLITVC  173 (175)
Q Consensus       162 ~f~~l~~~~~~~  173 (175)
                      +|+++.+.+..+
T Consensus       178 l~~~l~~~i~~~  189 (194)
T 3reg_A          178 VFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.2e-35  Score=200.71  Aligned_cols=164  Identities=39%  Similarity=0.678  Sum_probs=150.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            46999999999999999999999998888888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++.+++.+..|+..+..... .++|+++|+||+|+. .+.....+...++..++++++++||++|.|++++|++|
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  172 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999877653 579999999999984 45677888999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+..
T Consensus       173 ~~~~~~  178 (195)
T 1x3s_A          173 VEKIIQ  178 (195)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.4e-35  Score=198.45  Aligned_cols=164  Identities=32%  Similarity=0.508  Sum_probs=147.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ++++|+++|++|+|||||+++++++.+...+.++.+ +........++....+.+||+||++++...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887777777665 4446677788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++.+++.+..|+..+..... .+.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            9999999999999999998887654 689999999999998778888889999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=5.4e-35  Score=202.32  Aligned_cols=167  Identities=32%  Similarity=0.554  Sum_probs=149.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +....++|+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++.++|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            345679999999999999999999999887777777776443 4566778888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      +++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.++....++..++..++++++++||++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999988764 589999999999998878888899999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 030524          164 HTLNSLITV  172 (175)
Q Consensus       164 ~~l~~~~~~  172 (175)
                      ++|.+.+..
T Consensus       169 ~~l~~~i~~  177 (206)
T 2bov_A          169 FDLMREIRA  177 (206)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=6.2e-35  Score=202.24  Aligned_cols=166  Identities=38%  Similarity=0.637  Sum_probs=148.5

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            34679999999999999999999999988888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCCCHH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~  160 (175)
                      |+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.....+...++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999998887653    478999999999987 55667778888887 677899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++|++|.+.+..
T Consensus       164 ~l~~~l~~~~~~  175 (207)
T 1vg8_A          164 QAFQTIARNALK  175 (207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=4.6e-35  Score=197.68  Aligned_cols=166  Identities=32%  Similarity=0.423  Sum_probs=135.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc--ccccccccccCCcE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV   84 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   84 (175)
                      ...++|+++|++|+|||||+++|++......+ ++.+.+.....+..++..+.+.+||+||++.  +......++..+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            35699999999999999999999988765443 3455567777778888888999999999987  56677788899999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      +++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+++...+.+.++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887653 3579999999999998878888888889999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      ++|.+.+...
T Consensus       161 ~~l~~~~~~~  170 (175)
T 2nzj_A          161 EGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=4.8e-35  Score=198.37  Aligned_cols=163  Identities=20%  Similarity=0.357  Sum_probs=138.6

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      |.....+||+++|++|+|||||+++++++.+.. +.++.+ +.+...+.+++..+.+.+||++|+++     ..+++++|
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            566788999999999999999999999988765 666666 44466777888889999999999876     45788999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHhc-CCeEEEeccCCCC
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGF  157 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~  157 (175)
                      ++|+|||++++++++.+..|+..+....   ..++|+++|+||+|+.  ..+.+...+++.++... +++++++||++|.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence            9999999999999999999766665543   3689999999999984  45677888889898876 6899999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 030524          158 NIKLCCHTLNSLITVC  173 (175)
Q Consensus       158 ~v~~~f~~l~~~~~~~  173 (175)
                      |++++|+++.+.+...
T Consensus       155 ~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999887653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1e-35  Score=207.73  Aligned_cols=167  Identities=38%  Similarity=0.633  Sum_probs=149.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe----------EEEEEEEeCCCccccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLIP   76 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~~   76 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++.          .+.+.+||+||++++...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            45699999999999999999999998887777888887777777777665          78899999999999999999


Q ss_pred             ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (175)
                      .++.++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+...+.+.++..++++++++||++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  182 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  182 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence            999999999999999999999999999888776554 6899999999999987778888999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhh
Q 030524          156 GFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~~~~  173 (175)
                      |.|++++|++|.+.+...
T Consensus       183 g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          183 GQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999887654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.7e-35  Score=196.19  Aligned_cols=163  Identities=29%  Similarity=0.397  Sum_probs=123.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||++++.+.... ...++.+.+ .......++..+.+.+||++|++.+...+..++.++|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CE-EEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccc-eEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999876543 223333333 345667888999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      ||++++++++.+..|+..+..... .++|+++++||+|+.+++.....+.+.++...+++++++||++|.|++++|+++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            999999999999999999887643 6899999999999988888999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 030524          168 SLITVC  173 (175)
Q Consensus       168 ~~~~~~  173 (175)
                      +.+...
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            987653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=4.7e-36  Score=207.83  Aligned_cols=167  Identities=27%  Similarity=0.449  Sum_probs=112.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC--CCCCcccccceeeEEEEEEEECCe--EEEEEEEeCCCcccccccccccccCC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS   82 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (175)
                      ...++|+++|++|+|||||+++|++.  .+...+.++.+.++....+..++.  .+.+.+||+||++.+...+..++.++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999998  666777788877777888888876  88999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHHhcCCeEEEeccCC-CC
Q 030524           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSRELNVMFIETSAKA-GF  157 (175)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~  157 (175)
                      |++|+|||++++.+++.+..|+..+.....   .++|+++|+||+|+.+ .+.+...+++.++..++++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988876   6899999999999987 678888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHhhh
Q 030524          158 NIKLCCHTLNSLITVC  173 (175)
Q Consensus       158 ~v~~~f~~l~~~~~~~  173 (175)
                      |++++|++|.+.+...
T Consensus       178 gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          178 DADAPFLSIATTFYRN  193 (208)
T ss_dssp             --CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999887653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.1e-35  Score=205.46  Aligned_cols=169  Identities=31%  Similarity=0.503  Sum_probs=145.9

Q ss_pred             CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 030524            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (175)
Q Consensus         2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (175)
                      ++|+....++|+++|++|+|||||+++++++.+...+.++.+.. +...+..++..+.+.+||+||++++..++..++.+
T Consensus         2 s~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   80 (212)
T 2j0v_A            2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG   80 (212)
T ss_dssp             CCCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC-EEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT
T ss_pred             CCCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee-EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC
Confidence            46777788999999999999999999999988877777777644 35566678888899999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--------CCHHHHHHHHHhcCC-eEEEe
Q 030524           82 SSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--------VSIEEGEAKSRELNV-MFIET  151 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~  151 (175)
                      +|++|+|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+.+.        +...++..++..+++ +++++
T Consensus        81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (212)
T 2j0v_A           81 ADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC  159 (212)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence            99999999999999999986 7888887765 4899999999999865433        367888899999996 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhh
Q 030524          152 SAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ||++|+|++++|+++.+.+..
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          160 SSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.3e-34  Score=196.49  Aligned_cols=165  Identities=30%  Similarity=0.496  Sum_probs=144.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.. +........++..+.+.+||+||++.+...+..++.++|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999887777777664 555667778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||++++.+++.+..|+..+..... .+.|+++++||+|+. .+.........++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988654 689999999999986 5567788899999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 030524          166 LNSLITVC  173 (175)
Q Consensus       166 l~~~~~~~  173 (175)
                      |.+.+...
T Consensus       160 l~~~~~~~  167 (189)
T 4dsu_A          160 LVREIRKH  167 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-34  Score=201.67  Aligned_cols=166  Identities=28%  Similarity=0.399  Sum_probs=139.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCcE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSV   84 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~   84 (175)
                      ...+||+++|++|+|||||+++|++... .....++.+.+++...+.+++..+.+.+||++|.+. +..+...++..+|+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            4569999999999999999999997432 122234466677777788899999999999999876 55567778899999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      +|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+++..++++.++..++++++++||++|.|++++|
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf  194 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  194 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999988876542 2579999999999998777888888888999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 030524          164 HTLNSLITV  172 (175)
Q Consensus       164 ~~l~~~~~~  172 (175)
                      .++.+.+..
T Consensus       195 ~~l~~~i~~  203 (211)
T 2g3y_A          195 EGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=198.84  Aligned_cols=167  Identities=32%  Similarity=0.460  Sum_probs=138.0

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      .....++|+++|++|+|||||+++++++.+...+.++.+ +.+...+..++..+.+.+||+||++++...+..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            345679999999999999999999999887777777775 4445667788888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEE
Q 030524           85 AVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIE  150 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  150 (175)
                      +|+|||++++++++.+. .|+..+.... .++|+++|+||+|+.+            .+.+...+...++..+++ ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999987 7888887765 4899999999999865            356778889999999997 9999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhhh
Q 030524          151 TSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      +||++|.|++++|+++.+.+...
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999887653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=8.6e-35  Score=198.34  Aligned_cols=165  Identities=24%  Similarity=0.458  Sum_probs=143.4

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ....++|+++|++|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999888777778776554 45566788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcC-CeEEEe
Q 030524           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIET  151 (175)
Q Consensus        86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  151 (175)
                      |+|||++++++++.+ ..|+..+.... ++.|+++++||+|+.++            +.+..+++..+++.++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 67888887654 58999999999998642            5677888999999988 699999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHhh
Q 030524          152 SAK-AGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       152 s~~-~~~~v~~~f~~l~~~~~~  172 (175)
                      ||+ +|.|++++|+++.+.+..
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=5.4e-34  Score=195.14  Aligned_cols=167  Identities=29%  Similarity=0.495  Sum_probs=135.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +....++|+++|++|+|||||+++|+++.....+.++.+ +.....+..++..+.+.+||+||++++...+..++.++|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            445679999999999999999999999887766666665 3445566778888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      +++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ +.....+.++++..++++++++|+++|.|++++|
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998887654 5799999999999865 5667888999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      ++|.+.+...
T Consensus       175 ~~l~~~~~~~  184 (190)
T 3con_A          175 YTLVREIRQY  184 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=2e-34  Score=196.31  Aligned_cols=164  Identities=29%  Similarity=0.473  Sum_probs=144.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      +..++|+++|++|+|||||+++++++.+...+.++.+. ........++..+.+.+||+||++++...+..++.++|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            46799999999999999999999998877777777653 34556678888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEec
Q 030524           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  152 (175)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+...+...++..+++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 6888887765 38999999999998653            56778888899999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhh
Q 030524          153 AKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~~~  172 (175)
                      |++|.|++++|+++.+.+..
T Consensus       161 a~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCccCHHHHHHHHHHHHhc
Confidence            99999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.5e-35  Score=204.64  Aligned_cols=169  Identities=30%  Similarity=0.465  Sum_probs=146.8

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccCCc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      .....+||+++|++|+|||||+++|+++.+...+.++.+.+.........+ ..+.+.+||+||++.+...+..++.++|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            344679999999999999999999998887777788887777666665544 4488999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.........++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999998887789999999999998877888899999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      .+|.+.+...
T Consensus       167 ~~l~~~~~~~  176 (218)
T 4djt_A          167 LHLARIFTGR  176 (218)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcc
Confidence            9999887643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-34  Score=200.86  Aligned_cols=164  Identities=24%  Similarity=0.463  Sum_probs=143.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||+++|++..+...+.++.+.++ ...+..++..+.+.+||++|++.+...+..++.++|++|
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            4579999999999999999999999988877778776554 455667788889999999999999999999999999999


Q ss_pred             EEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcC-CeEEEec
Q 030524           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETS  152 (175)
Q Consensus        87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s  152 (175)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+...+++.+++.++ ++++++|
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  183 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  183 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence            99999999999998 78888887664 5899999999999864            25677888999999988 6999999


Q ss_pred             cC-CCCCHHHHHHHHHHHHhh
Q 030524          153 AK-AGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       153 ~~-~~~~v~~~f~~l~~~~~~  172 (175)
                      |+ +|.|++++|+++.+.+..
T Consensus       184 Ak~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          184 ALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHHHHhh
Confidence            99 689999999999998764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=212.67  Aligned_cols=167  Identities=38%  Similarity=0.659  Sum_probs=143.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            34699999999999999999999998888888888888888888889999899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+.+.++..++++++++||++|.|++++|.+|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l  190 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  190 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999987766789999999999998777777777888999999999999999999999999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      .+.+...
T Consensus       191 ~~~l~~~  197 (199)
T 3l0i_B          191 AAEIKKR  197 (199)
T ss_dssp             TTTTTTT
T ss_pred             HHHHHHh
Confidence            8877653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-34  Score=193.87  Aligned_cols=164  Identities=29%  Similarity=0.457  Sum_probs=143.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.++|+++|++|+|||||+++++++.+...+.++.+.++ ......++..+.+.+||+||++++...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999887767777766443 3455677888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      |||++++++++.+..|+..+.....  .+.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888877643  57999999999999877788888889999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030524          166 LNSLITV  172 (175)
Q Consensus       166 l~~~~~~  172 (175)
                      |.+.+..
T Consensus       161 l~~~~~~  167 (172)
T 2erx_A          161 LLNLEKR  167 (172)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHhh
Confidence            9887643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.1e-35  Score=202.04  Aligned_cols=168  Identities=33%  Similarity=0.513  Sum_probs=127.7

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (175)
                      +|+....++|+++|++|+|||||+++++.+.+...+.++.+..+ ......++..+.+.+||+||++++...+..++.++
T Consensus         2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (182)
T 3bwd_D            2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA   80 (182)
T ss_dssp             -----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTC
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCC
Confidence            46667789999999999999999999999887766666665333 23344566677889999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------CCHHHHHHHHHhcCC-eEEE
Q 030524           83 SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----------VSIEEGEAKSRELNV-MFIE  150 (175)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~  150 (175)
                      |++++|||++++.+++.+. .|+..+.... .+.|+++++||+|+.+.+.          +...++..++..+++ ++++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (182)
T 3bwd_D           81 DVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE  159 (182)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999987 6888887765 4899999999999865443          467888899999997 9999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhh
Q 030524          151 TSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +||++|.|++++|+++.+.+..
T Consensus       160 ~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          160 CSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EECCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999988753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=199.62  Aligned_cols=164  Identities=30%  Similarity=0.502  Sum_probs=124.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.. +.+.....+++..+.+.+||+||++++...+..++.++|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999887777777665 444556678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEec
Q 030524           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  152 (175)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.            +.+...++..++..+++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 6888887654 57999999999998754            36677888999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhh
Q 030524          153 AKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~~~  172 (175)
                      |++|.|++++|++|.+.+..
T Consensus       190 A~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.3e-33  Score=188.64  Aligned_cols=163  Identities=29%  Similarity=0.491  Sum_probs=143.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||+++++++.....+.++.+ +........++..+.+.+||+||++++...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            358999999999999999999999887766666665 3445566778888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++.+++.+..|+..+..... .+.|+++++||+|+.+ +.....+.++++..++++++++|+++|.|++++|.++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998887654 4799999999999865 5667888899999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      .+.+..
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.7e-33  Score=194.49  Aligned_cols=162  Identities=31%  Similarity=0.510  Sum_probs=142.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|++|+|||||++++.++.+...+.++.+.++. ..+..++..+.+.+||+||++++...+..++.++|++|+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            5699999999999999999999998887777777765554 346778888899999999999999999999999999999


Q ss_pred             EEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEecc
Q 030524           88 VYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA  153 (175)
Q Consensus        88 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~  153 (175)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+...++..++...++ +++++||
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA  181 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence            9999999999998 67777776654 58999999999998754            45778888999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHh
Q 030524          154 KAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~  171 (175)
                      ++|.|++++|++|.+.+.
T Consensus       182 ~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          182 KTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=4.6e-34  Score=197.85  Aligned_cols=162  Identities=30%  Similarity=0.484  Sum_probs=140.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||+++++.+.+...+.++.+ +........++..+.+.+||+||++++...+..++.++|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4679999999999999999999999888777777775 555666778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHhcCC-eEEEec
Q 030524           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS  152 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  152 (175)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+...++..++...++ +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999987 7888777765 689999999999986543            3778888999999997 699999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 030524          153 AKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~  170 (175)
                      |++|+|++++|+++.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998865

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-33  Score=195.36  Aligned_cols=165  Identities=31%  Similarity=0.500  Sum_probs=138.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+.++. ..+..++..+.+.+||+||++++...+..++.++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45789999999999999999999998887777777765544 34677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEec
Q 030524           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (175)
Q Consensus        87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  152 (175)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+...++..++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67877776654 58999999999998654            45778888899999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhhh
Q 030524          153 AKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      |++|.|++++|++|.+.+...
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999987643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.5e-34  Score=195.30  Aligned_cols=166  Identities=30%  Similarity=0.472  Sum_probs=143.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +....++|+++|++|+|||||+++|+++.+...+.++.+.++ ......++..+.+.+||+||++++...+..++.++|+
T Consensus         4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   82 (199)
T 2gf0_A            4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA   82 (199)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred             cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence            445679999999999999999999999887777777766443 3455678888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      +++|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+ +.....+...++..++++++++||++|.|++++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL  161 (199)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence            9999999999999999988887776543  4789999999999864 566778888899999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 030524          163 CHTLNSLITV  172 (175)
Q Consensus       163 f~~l~~~~~~  172 (175)
                      |++|.+.+..
T Consensus       162 ~~~l~~~~~~  171 (199)
T 2gf0_A          162 FQELLTLETR  171 (199)
T ss_dssp             HHHHHHHCSS
T ss_pred             HHHHHHHHhh
Confidence            9999987643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=1.2e-34  Score=203.06  Aligned_cols=166  Identities=27%  Similarity=0.513  Sum_probs=147.6

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      ......+||+++|++|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+...+..++.++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            34456799999999999999999998877777777888888888888889999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      ++|+|||++++.+++.+..|+..+.... .++|+++|+||+|+.+....  .+...++...+++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  166 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF  166 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999998875 48999999999998654432  25667788889999999999999999999


Q ss_pred             HHHHHHHhh
Q 030524          164 HTLNSLITV  172 (175)
Q Consensus       164 ~~l~~~~~~  172 (175)
                      .+|.+.+..
T Consensus       167 ~~l~~~l~~  175 (221)
T 3gj0_A          167 LWLARKLIG  175 (221)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=3.9e-33  Score=191.49  Aligned_cols=165  Identities=28%  Similarity=0.454  Sum_probs=136.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC--CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS   83 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   83 (175)
                      ...+||+++|++|+|||||+++|++..  +... .++.+.++....+.+++..+.+.+||++|.+. +..+...++..+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            346899999999999999999999633  2333 34456677777788899988999999999776 5567778888999


Q ss_pred             EEEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524           84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      ++++|||++++++|+.+..|+..+.... ..++|+++++||+|+.+.+.+...+++.++..++++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988877653 357999999999999877778888888888889999999999999999999


Q ss_pred             HHHHHHHHhh
Q 030524          163 CHTLNSLITV  172 (175)
Q Consensus       163 f~~l~~~~~~  172 (175)
                      |.++.+.+..
T Consensus       163 f~~l~~~~~~  172 (192)
T 2cjw_A          163 FEGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.4e-34  Score=198.77  Aligned_cols=164  Identities=22%  Similarity=0.233  Sum_probs=136.4

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCc-----------ccccceeeEEEEEE-EECCeEEEEEEEeCCCcccccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFRS   73 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~   73 (175)
                      ....+||+++|++|+|||||++.+.+. +...           +.++.+.++..... ..++..+.+.+||+||++++..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            345799999999999999999766554 3333           23455555555444 5677788999999999999999


Q ss_pred             cccccccCCcEEEEEEECC------ChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-
Q 030524           74 LIPSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-  146 (175)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-  146 (175)
                      .+..+++++|++|+|||++      +.++++.+..|+..+. ....++|+++|+||+|+.+  ....+++++++..+++ 
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~  166 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKF  166 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCS
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCc
Confidence            9999999999999999999      6678888888888773 2337899999999999855  4778899999999999 


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          147 MFIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       147 ~~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      +++++||++|.|++++|.+|.+.+..+
T Consensus       167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          167 PVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             CEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999999999999988765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=1.2e-33  Score=194.50  Aligned_cols=164  Identities=17%  Similarity=0.228  Sum_probs=129.5

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (175)
                      .+.....+|+++|++|+|||||+++|+++.+.. .+.++.+.....  +.  +..+.+.+||+||++++...+..++.++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--FE--KGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--EE--ETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            345578999999999999999999999998877 777777744433  22  3446899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHhHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCCCHHHHHH------HHHhcCCeE
Q 030524           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--------SDVIIVLVGNKTDLVEKRQVSIEEGEA------KSRELNVMF  148 (175)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~iiv~nk~D~~~~~~~~~~~~~~------~~~~~~~~~  148 (175)
                      |++|+|||++++++|+.+..|+..+.....        .++|+++|+||+|+.+...  ..+...      ++...++++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence            999999999999999999999988876522        2799999999999865432  222211      124567899


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          149 IETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       149 ~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      +++||++|.|++++|++|.+.+...
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEeeCCCccCHHHHHHHHHHHHHHH
Confidence            9999999999999999999887654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=1.2e-31  Score=184.88  Aligned_cols=165  Identities=35%  Similarity=0.669  Sum_probs=147.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||++++++..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++.+++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            35899999999999999999999988877778888888888888899998999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++.+++.+..|+..+......+.|+++++||+|+.+.+.....+++.++...++.++++|++++.|++++|++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998888766556799999999999987777788889999999999999999999999999999999


Q ss_pred             HHHhh
Q 030524          168 SLITV  172 (175)
Q Consensus       168 ~~~~~  172 (175)
                      +.+..
T Consensus       164 ~~~~~  168 (199)
T 2f9l_A          164 TEIYR  168 (199)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=1.5e-32  Score=189.35  Aligned_cols=157  Identities=21%  Similarity=0.246  Sum_probs=123.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+.+  ...+..++  ..+.+|||||++.+...+..+++++|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999987653 345555443  23455566  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-----------------cCCeE
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----------------LNVMF  148 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  148 (175)
                      +|||++++++|+.+..|+..+.... ..++|+++++||+|+.+  ....++..+++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999999887653 36899999999999864  5566777776653                 34689


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 030524          149 IETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       149 ~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ++|||++|+|++++|++|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=4.3e-32  Score=185.95  Aligned_cols=156  Identities=23%  Similarity=0.241  Sum_probs=127.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+.+  ...+..++  +.+.+||+||++.+...+..++.++|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            35689999999999999999999987754 445555543  34555666  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh------------cCCeEEEecc
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA  153 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~  153 (175)
                      +|||++++++++.+..|+..+.... ..+.|+++++||+|+.+  ....++..+.+..            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999998887643 26899999999999865  4556666665543            3568999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 030524          154 KAGFNIKLCCHTLNSL  169 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~  169 (175)
                      ++|+|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-32  Score=185.68  Aligned_cols=162  Identities=20%  Similarity=0.282  Sum_probs=130.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC-CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      .+.++|+++|++|+|||||+++|++.. ....+.++.+  .....+..++  ..+.+||+||++++...+..++.++|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            457999999999999999999999887 4555666665  3344444554  6799999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCC
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGF  157 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~  157 (175)
                      |+|||++++++++.+..|+..+.....   .+.|+++|+||+|+.+  .....+....+.     ..+++++++||++|.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            999999999999999999988877643   4799999999999864  334555555553     246789999999999


Q ss_pred             CHHHHHHHHHHHHhhhh
Q 030524          158 NIKLCCHTLNSLITVCI  174 (175)
Q Consensus       158 ~v~~~f~~l~~~~~~~~  174 (175)
                      |++++|++|.+.+....
T Consensus       173 gi~~l~~~l~~~i~~~k  189 (190)
T 2h57_A          173 GLQEGVDWLQDQIQTVK  189 (190)
T ss_dssp             THHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999998876544

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=9.4e-33  Score=185.69  Aligned_cols=159  Identities=21%  Similarity=0.313  Sum_probs=127.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||+++++++.+. .+.++.+..  ...+..+  ...+.+||+||++.+...+..++.++|++++
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            4699999999999999999999987764 345555533  3344444  3679999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      |||++++++++.+..|+..+..... .+.|+++++||+|+.+...  ..+....     +...+++++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            9999999999999998888876533 6899999999999865432  2222222     334467899999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030524          162 CCHTLNSLITVC  173 (175)
Q Consensus       162 ~f~~l~~~~~~~  173 (175)
                      +|++|.+.+..+
T Consensus       159 l~~~l~~~i~~~  170 (171)
T 1upt_A          159 AMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhc
Confidence            999999887653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=5.6e-32  Score=184.50  Aligned_cols=160  Identities=23%  Similarity=0.321  Sum_probs=130.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++++++. ...+.++.+...  ..+..++  ..+.+||+||++++...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999887 666677766443  3344444  67999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++++++.+..|+..+..... .+.|+++++||+|+.++.  ...+..+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            99999999999999999888876533 679999999999986543  3334333322     346789999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      ++|+++.+.+..+
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=2.1e-33  Score=192.16  Aligned_cols=160  Identities=23%  Similarity=0.338  Sum_probs=130.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+.++..  +...  .+.+.+||+||++++...+..++.++|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            457999999999999999999999988777777777766543  2233  467999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++++++.+..|+..+..... .++|+++|+||+|+.+..  ...+.....     ...+++++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            99999999999999999988876532 689999999999986532  222322221     1235689999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++|++|.+.+..
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=100.00  E-value=2.9e-31  Score=181.98  Aligned_cols=163  Identities=35%  Similarity=0.680  Sum_probs=148.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|||||||++++.+......+.++.+.++....+.+++..+.+.+||++|.+++...+..++.+++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            45899999999999999999999998888888898888888888899988889999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||+++..+++.+..|+..+......+.|+++++||+|+.+.+......++.++.+.++.++++|++++.+++++|++|.
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999998898887766556789999999999987777788889999999999999999999999999999998


Q ss_pred             HHH
Q 030524          168 SLI  170 (175)
Q Consensus       168 ~~~  170 (175)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=2.9e-33  Score=187.11  Aligned_cols=157  Identities=21%  Similarity=0.330  Sum_probs=122.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|+|||||+++++++.+.. +.++.+..  ...+..  ..+.+.+||+||++++...+..++.++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877553 45555532  233333  3467999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      |++++++++.+..|+..+.... ..+.|+++++||+|+.+..  ...+....     +...+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999999988887643 2689999999999986532  22232222     12235689999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      +++.+.+..+
T Consensus       154 ~~l~~~i~~~  163 (164)
T 1r8s_A          154 DWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHhhc
Confidence            9999887543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=7.4e-33  Score=190.08  Aligned_cols=160  Identities=20%  Similarity=0.328  Sum_probs=121.7

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ..+.++|+++|++|+|||||+++++.+.+. .+.++.+.  ....+..++  +.+.+||+||++++...+..++.++|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            456799999999999999999999987654 34555542  233344444  6799999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v  159 (175)
                      |+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+....     +...+++++++||++|.|+
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            99999999999999999998887643 2579999999999986532  22232222     1223467999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030524          160 KLCCHTLNSLITV  172 (175)
Q Consensus       160 ~~~f~~l~~~~~~  172 (175)
                      +++|++|.+.+..
T Consensus       179 ~~l~~~l~~~i~~  191 (192)
T 2b6h_A          179 YDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=3.3e-32  Score=185.08  Aligned_cols=158  Identities=20%  Similarity=0.298  Sum_probs=125.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      ...+.++|+++|++|+|||||+++|+++.+ ..+.++.+...  ..+..++  ..+.+||+||++++...+..++.++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            345679999999999999999999999876 45555555443  3334454  679999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN  158 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~  158 (175)
                      +|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ....+..+..     ...+++++++||++|.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999999988887653 368999999999998653  3344444433     23456899999999999


Q ss_pred             HHHHHHHHHHH
Q 030524          159 IKLCCHTLNSL  169 (175)
Q Consensus       159 v~~~f~~l~~~  169 (175)
                      ++++|++|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.1e-32  Score=183.96  Aligned_cols=159  Identities=20%  Similarity=0.317  Sum_probs=125.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|++|+|||||+++++++.+. .+.++.+...  ..+..++  ..+.+||+||++++...+..++.++|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999987765 5555555333  3334454  67999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.  ....+..+..     ...+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            99999999999999999998877532 67999999999998642  3344444433     2346789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++|++|.+.+..
T Consensus       167 ~l~~~l~~~~~~  178 (187)
T 1zj6_A          167 QGLEWMMSRLKI  178 (187)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=5.8e-31  Score=194.22  Aligned_cols=163  Identities=29%  Similarity=0.475  Sum_probs=143.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..++|+++|++|+|||||+++++++.+...+.++.+ +.....+..++..+.+.+||+||++.+...+..++.++|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999888777777765 4445667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEecc
Q 030524           88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA  153 (175)
Q Consensus        88 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~  153 (175)
                      |||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.            +.+...++..++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999987 6877777665 48999999999998643            56788899999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhh
Q 030524          154 KAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++|.|++++|++|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.98  E-value=1.5e-32  Score=187.82  Aligned_cols=160  Identities=21%  Similarity=0.307  Sum_probs=127.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|++|+|||||+++++.+.+. .+.++.+..  ...+..++  ..+.+|||||++++...+..+++++|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            46799999999999999999999877654 345555433  33344443  67999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~  160 (175)
                      +|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+..  ...+....     +...+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            99999999999999998888876543 689999999999986542  22233222     23345689999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      ++|+++.+.+...
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.98  E-value=1.8e-32  Score=186.96  Aligned_cols=163  Identities=21%  Similarity=0.348  Sum_probs=124.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC--CCCCcccccceeeEEEEEEEE---CCeEEEEEEEeCCCcccccccccccccCCc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (175)
                      .+||+++|++|+|||||++++++.  .....+.++.+.++.......   ++..+.+.+||++|++++..++..++.++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  444556777777776665543   335678999999999999999999999999


Q ss_pred             EEEEEEECCCh-hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC---HHHHHHHHHhcCCe----EEEeccCC
Q 030524           84 VAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVM----FIETSAKA  155 (175)
Q Consensus        84 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~  155 (175)
                      ++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+.+...   ......++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 58999999999887654 479999999999986543322   23345666677876    99999999


Q ss_pred             CC-CHHHHHHHHHHHHhh
Q 030524          156 GF-NIKLCCHTLNSLITV  172 (175)
Q Consensus       156 ~~-~v~~~f~~l~~~~~~  172 (175)
                      |. ++.+++..+.+.+..
T Consensus       161 ~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          161 ESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHhc
Confidence            97 999999998877653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.98  E-value=2e-31  Score=181.32  Aligned_cols=159  Identities=22%  Similarity=0.346  Sum_probs=125.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||++++.+... ..+.++.+..  ...+..++  +.+.+||+||++.+...+..++.++|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            4679999999999999999999998753 3445555533  33344453  67999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++++++.+..|+..+..... .+.|+++++||+|+.+...  ..+..+..     ...+++++++||++|+|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            99999999999999999888765432 6799999999999865432  33333221     2235689999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++|+++.+.+..
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=2.3e-34  Score=199.24  Aligned_cols=162  Identities=30%  Similarity=0.493  Sum_probs=137.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|++|+|||||+++++++.+...+.++.. +.....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            5679999999999999999999998877766666664 333455566777788999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHhcCC-eEEEec
Q 030524           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS  152 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  152 (175)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+..            .....+...++...++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999986 7877776554 379999999999986543            4556677788888887 999999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 030524          153 AKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~  170 (175)
                      |++|.|++++|+++.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=8.9e-32  Score=185.18  Aligned_cols=161  Identities=16%  Similarity=0.184  Sum_probs=123.1

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEE--EEEEEE-CCeEEEEEEEeCCCcccccccc---ccc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL--SKTMYL-EDRTVRLQLWDTAGQERFRSLI---PSY   78 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~   78 (175)
                      +....+||+++|++|||||||++++.++... .  ++.+.+..  .....+ ++..+.+.+||++|+++|....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            4456899999999999999999988775322 2  23332222  222223 2556789999999999987776   899


Q ss_pred             ccCCcEEEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CCCCCHHHHHHHHH----hcC
Q 030524           79 IRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIEEGEAKSR----ELN  145 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~-------~~~~~~~~~~~~~~----~~~  145 (175)
                      ++++|++|+|||++++  ++++.+..|+..+... ..+.|+++|+||+|+.+       .+.+...+...++.    .++
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            9999999999999997  7777788888877543 36899999999999754       23444556677777    678


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          146 VMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       146 ~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ++++++||++ .|++++|..+.+.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            8999999999 99999999998875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=5.3e-31  Score=179.06  Aligned_cols=160  Identities=23%  Similarity=0.337  Sum_probs=126.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...++|+++|++|+|||||+++++++.. ..+.++.+...  ..+..++  ..+.+||+||++++...+..++.++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5679999999999999999999998765 45555655333  3344444  67999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  160 (175)
                      +|+|++++++++.+..|+..+.... ..+.|+++++||+|+.+.  ....+......     ..+++++++||++|+|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999998887654 368999999999998653  33444444332     234589999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      ++|++|.+.+..+
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=191.32  Aligned_cols=166  Identities=20%  Similarity=0.275  Sum_probs=126.0

Q ss_pred             CCCCCceeEEEECCC---------CCCHHHHHHHHhc---CCCCCcccccc-eeeEEEEEE--------------EECCe
Q 030524            4 VSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKTM--------------YLEDR   56 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~   56 (175)
                      ......+||+++|.+         |||||||+++|++   ..+...+.++. +.++....+              .+++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            345567999999999         9999999999998   44555555553 333221111              14567


Q ss_pred             EEEEEEEe-----------------------CCCccccccccccccc---------------------CCcEEEEEEECC
Q 030524           57 TVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVVVYDVA   92 (175)
Q Consensus        57 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~   92 (175)
                      .+.+.+||                       ++|+++|..++..++.                     ++|++|+|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       7778888888888887                     799999999999


Q ss_pred             Ch--hhHHhHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           93 SR--QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        93 ~~--~~~~~~~~~~~~~~~~-~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ++  ++|+.+..|+..+... ...++|+++|+||+|+.+.+.+  .+.+.++.. .+++++++||++|.|++++|.+|.+
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            98  9999999999998776 3368999999999998654443  566777766 4889999999999999999999988


Q ss_pred             HHh
Q 030524          169 LIT  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       252 ~l~  254 (255)
T 3c5h_A          252 LID  254 (255)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=9.2e-31  Score=182.28  Aligned_cols=161  Identities=21%  Similarity=0.292  Sum_probs=115.2

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCCc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSS   83 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d   83 (175)
                      ....++|+++|++|+|||||+++|+++.+...+.++ +.+...  +..++. .+.+.+|||||++++.. ++..++.++|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            346799999999999999999999998877666543 334433  445543 57899999999999988 7888999999


Q ss_pred             EEEEEEECCChh-hHHhHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCCCCCH--HHHH-------------------
Q 030524           84 VAVVVYDVASRQ-SFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVSI--EEGE-------------------  138 (175)
Q Consensus        84 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~---~~~~~~~iiv~nk~D~~~~~~~~~--~~~~-------------------  138 (175)
                      ++|+|||+++.. ++.....++..+...   ...++|+++|+||+|+.+......  ....                   
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999864 466665555544333   235799999999999865432110  0111                   


Q ss_pred             -------------HHHH-hc--CCeEEEeccCCC------CCHHHHHHHHHHH
Q 030524          139 -------------AKSR-EL--NVMFIETSAKAG------FNIKLCCHTLNSL  169 (175)
Q Consensus       139 -------------~~~~-~~--~~~~~~~s~~~~------~~v~~~f~~l~~~  169 (175)
                                   .++. .+  +++|++|||++|      .|++++|++|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                         1111 11  668999999999      9999999999875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.97  E-value=6.1e-30  Score=171.49  Aligned_cols=154  Identities=15%  Similarity=0.223  Sum_probs=116.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYIR-   80 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~-   80 (175)
                      ..++|+++|++|+|||||++++.+........++.+.+.....+..++  ..+.+|||||+.++..      +...++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            358999999999999999999998765544455555555555555555  4799999999887652      3355554 


Q ss_pred             -CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        81 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                       ++|++++|+|+++.+.   ...|+..+..   .+.|+++++||+|+.+.+.... +.+.++..++++++++||++|.|+
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence             8999999999988653   3446666554   3699999999999865444332 467788888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 030524          160 KLCCHTLNSLI  170 (175)
Q Consensus       160 ~~~f~~l~~~~  170 (175)
                      +++|+++.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=3.1e-29  Score=169.57  Aligned_cols=155  Identities=16%  Similarity=0.207  Sum_probs=119.3

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      ..+.++|+++|++|+|||||+++|++..+...+.++.+.+.....+..++.  .+.+||+||++++...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            456799999999999999999999998877666666665655556666664  578999999999999999999999999


Q ss_pred             EEEEECCCh---hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-------cC--CeEEEecc
Q 030524           86 VVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LN--VMFIETSA  153 (175)
Q Consensus        86 i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~  153 (175)
                      |+|+|++++   .+++.+    ..+   ...++|+++|+||+|+.+.   ...+.......       ++  ++++++||
T Consensus        83 i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             EEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             EEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            999999884   333322    222   2257999999999998653   22333333222       22  58999999


Q ss_pred             CCCCCHHHHHHHHHHHHhh
Q 030524          154 KAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++|.|++++|++|.+.+..
T Consensus       153 ~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          153 KTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             SSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhhh
Confidence            9999999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=191.69  Aligned_cols=159  Identities=21%  Similarity=0.324  Sum_probs=121.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.++|+++|++|+|||||+++|.++.+... .++.+..+.  .+...  .+.+.+|||||++.+..++..++.++|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999998775433 345544433  23333  367999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+..  ...+......     ..+++++++||++|.|++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            99999999999999888887765543 689999999999986543  2233322222     234579999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030524          161 LCCHTLNSLITV  172 (175)
Q Consensus       161 ~~f~~l~~~~~~  172 (175)
                      ++|++|.+.+..
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.97  E-value=5.9e-29  Score=174.86  Aligned_cols=164  Identities=17%  Similarity=0.146  Sum_probs=116.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc------cc---cccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE------RF---RSLIPS   77 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~---~~~~~~   77 (175)
                      ...++|+++|++|+|||||+++|++..+.....+..+.+........++  ..+.+|||||+.      ..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4679999999999999999999998765422222223333333333344  579999999983      21   112334


Q ss_pred             cccCCcEEEEEEECCChhhHHh--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHhcC--CeEEE
Q 030524           78 YIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELN--VMFIE  150 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  150 (175)
                      ++..+|++|+|||++++.+++.  ...|+..+... ..++|+++|+||+|+.+.++....   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            5778999999999999887652  23455555432 247999999999999776666554   4566777777  89999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhhh
Q 030524          151 TSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      +||++|+|++++|++|.+.+...
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999887643

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.97  E-value=1.1e-29  Score=185.78  Aligned_cols=161  Identities=21%  Similarity=0.306  Sum_probs=128.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC---CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI   79 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~   79 (175)
                      ..+||+++|++|+|||||+++++++...   ..+.+|.+..+..  ..+++ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999987432   2345555554443  33444 578999999999988     77888999


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--CCC----CCHHHHHHHHHhcC---CeE
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVE--KRQ----VSIEEGEAKSRELN---VMF  148 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nk~D~~~--~~~----~~~~~~~~~~~~~~---~~~  148 (175)
                      +++|++|+|||++++++++.+..|...+....  .+++|+++++||+|+.+  .+.    ....++.+++..+|   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877755444332  36899999999999875  343    55577888999987   799


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhh
Q 030524          149 IETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       149 ~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +++||++ .++.++|..+.+.+.+
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            9999999 8999999998876643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.96  E-value=2.2e-29  Score=172.79  Aligned_cols=162  Identities=15%  Similarity=0.184  Sum_probs=111.4

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR   72 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~   72 (175)
                      +++....++|+++|++|+|||||+++|++..+.....++.+.+........++   .+.+|||||          ++.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~   93 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence            34556679999999999999999999998875544444444444333334444   589999999          67777


Q ss_pred             ccccccccCC---cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH--HHHHH-HHHhcCC
Q 030524           73 SLIPSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGEA-KSRELNV  146 (175)
Q Consensus        73 ~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~--~~~~~-~~~~~~~  146 (175)
                      ..+..++.++   |++++|+|++++.++.... ++..+. .  .+.|+++|+||+|+.+.++...  .+..+ ++...++
T Consensus        94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~-~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLK-Y--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH-H--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHH-H--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            7788887776   9999999999887766532 112222 1  5789999999999876544322  22332 3334467


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          147 MFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       147 ~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +++++||++|.|++++|++|.+.+.
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999988753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=4.2e-30  Score=187.16  Aligned_cols=156  Identities=16%  Similarity=0.151  Sum_probs=119.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCC---cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---cccccccCCcE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV   84 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   84 (175)
                      ||+++|+.|||||||++++.++..+.   ...+|.++++..    ++ ..+++.+|||+|+++|..   .+..|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887664332   245667666543    22 347899999999999975   46889999999


Q ss_pred             EEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHHh----cCCeEEEe
Q 030524           85 AVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSRE----LNVMFIET  151 (175)
Q Consensus        85 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  151 (175)
                      +|+|||++++  +.++.+..|+..+... .+++|+++++||+|+.++       +++...+++++++.    ++++|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999998  3333333444444433 368999999999999654       34556667777775    68899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhhh
Q 030524          152 SAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       152 s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      ||++ .++.++|..+++.+.++
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTT
T ss_pred             ccCC-CcHHHHHHHHHHHHHhh
Confidence            9998 58999999999887765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=7.5e-29  Score=169.17  Aligned_cols=157  Identities=14%  Similarity=0.199  Sum_probs=123.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR   80 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~   80 (175)
                      .+.++|+++|++|+|||||+++|++........++.+.+.....+..++  ..+.+|||||++.+.      ..+..++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            3679999999999999999999998765555555656666666666665  578999999988775      34555554


Q ss_pred             --CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           81 --DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        81 --~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                        .+|++++|+|.++   ++....|+..+..   .+.|+++++||+|+.+.+... ...+.++..++++++++|+++|.|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence              5999999999865   4556667666654   478999999999986544433 356778888899999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030524          159 IKLCCHTLNSLITV  172 (175)
Q Consensus       159 v~~~f~~l~~~~~~  172 (175)
                      ++++|+++.+.+..
T Consensus       156 v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          156 IEELKKAISIAVKD  169 (188)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.96  E-value=2.2e-28  Score=162.73  Aligned_cols=150  Identities=17%  Similarity=0.155  Sum_probs=107.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD   81 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   81 (175)
                      .||+++|++|+|||||++++.+.... ....+..+.+........++.  .+.+||+||+..       +...+..++.+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999987643 233334444555555666664  689999999876       34456677899


Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHH
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  160 (175)
                      +|++++|+|++++.+..  ..++......  .+.|+++++||+|+.+..    .+..+++ .+++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            99999999999864332  2333333333  468999999999986542    2334445 5677 89999999999999


Q ss_pred             HHHHHHHHHH
Q 030524          161 LCCHTLNSLI  170 (175)
Q Consensus       161 ~~f~~l~~~~  170 (175)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.96  E-value=1e-28  Score=166.62  Aligned_cols=154  Identities=19%  Similarity=0.191  Sum_probs=115.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (175)
                      ...+|+++|++|+|||||+++|.+.... ....+..+.++....+..++.  .+.+|||||+.++...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987532 222334445666666677764  4899999998653221        1135


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                      +.++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.++..       .++...+++++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999988875 45677777766556899999999999853211       12333567999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.96  E-value=6.8e-29  Score=193.83  Aligned_cols=164  Identities=21%  Similarity=0.340  Sum_probs=126.2

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEE------EEE--CCeEEEEEEEeCCCccccccccc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT------MYL--EDRTVRLQLWDTAGQERFRSLIP   76 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~   76 (175)
                      .....+||+++|.+|+|||||++++.+..+...+.++.+.++....      +.+  ++..+.+.+||+||++.+...+.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4567899999999999999999999998887778888887776553      112  23357899999999999999999


Q ss_pred             ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (175)
                      .++.++|++|+|+|+++.   +.+..|+..+.... .+.|+++|+||+|+.+.+.....+.+.++...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999998765   45677888777665 47999999999999888888888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 030524          157 FNIKLCCHTLNSLITV  172 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~~  172 (175)
                      .|++++|..+.+.+..
T Consensus       193 ~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLH  208 (535)
T ss_dssp             --CTTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999987754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=1.2e-28  Score=168.20  Aligned_cols=155  Identities=23%  Similarity=0.286  Sum_probs=118.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY   78 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   78 (175)
                      ++|+++|++|+|||||++++++..+...+.++.+....  .....    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999998876666555443332  22233    589999999           66777777778


Q ss_pred             ccC-CcEEEEEEECCChhhHHhH-HHHHHH--------HHH-hcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe
Q 030524           79 IRD-SSVAVVVYDVASRQSFLNT-SKWIDE--------VRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (175)
Q Consensus        79 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~~~-~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~  147 (175)
                      +.+ ++++++++++.+..+++.+ ..|...        +.. ....++|+++++||+|+.+..   ....+.++..++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            777 7777777777777788776 555542        222 222579999999999986544   56677888888874


Q ss_pred             -------EEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          148 -------FIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       148 -------~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                             ++++||++|.|++++|+++.+.+...
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence                   79999999999999999999887653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.95  E-value=8e-28  Score=171.89  Aligned_cols=156  Identities=17%  Similarity=0.189  Sum_probs=120.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc-
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI-   79 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~-   79 (175)
                      .+.++|+++|++|+|||||+++|++........+..+++.....+...+  ..+.+||+||...+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            3568999999999999999999998776544455555555555554444  57999999998877653      24555 


Q ss_pred             -cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        80 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                       .++|++++|+|+++.++...   |...+..   .++|+++++||+|+.+.+.... +...++..++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~~---~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSLY---LLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHHH---HHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHHH---HHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             58999999999998765433   4444443   4799999999999865544442 36778888999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      ++++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=1.3e-27  Score=163.68  Aligned_cols=160  Identities=18%  Similarity=0.245  Sum_probs=114.0

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR   72 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~   72 (175)
                      +.+....++|+++|++|+|||||++++++... ....++.+.+........+.   .+.+||+||          ++.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hCCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence            34556679999999999999999999998863 23333333333333333333   478999999          66677


Q ss_pred             ccccccccCC---cEEEEEEECCChhhHH--hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHHhcC
Q 030524           73 SLIPSYIRDS---SVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN  145 (175)
Q Consensus        73 ~~~~~~~~~~---d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~~~~~~~~~~~~~  145 (175)
                      ..+..++.++   |++++|+|++++.+..  .+..|+..      .++|+++|+||+|+.++.  .....+.+.++...+
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            7777777665   9999999998763332  23334332      269999999999986432  233445566666644


Q ss_pred             -CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          146 -VMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       146 -~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                       ++++++||++|.|++++|++|.+.+..
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence             799999999999999999999988754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=2.6e-27  Score=173.28  Aligned_cols=164  Identities=12%  Similarity=0.142  Sum_probs=125.4

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----------   72 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------   72 (175)
                      ++...+-.|+++|.+|+|||||+|+|++..... ...+..+.+........+ ....+.+|||||+.++.          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            455677899999999999999999999987652 222223223333333333 13579999999986544          


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEE
Q 030524           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIE  150 (175)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~  150 (175)
                      ..+..++..+|++++|+|++++.+++....|+..+..   .+.|+++|+||+|+.............+...++  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            4566778899999999999998888887777777665   368999999999987455556667777777775  68999


Q ss_pred             eccCCCCCHHHHHHHHHHHHh
Q 030524          151 TSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +||++|.|++++|+++.+.+.
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSC
T ss_pred             EeCCCCCCHHHHHHHHHHhCc
Confidence            999999999999999988764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.95  E-value=5.1e-28  Score=172.66  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=118.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI   79 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   79 (175)
                      .+|+++|++|+|||||+|+|.+........+..+.+.....+..++.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998765555666776777777777764  689999999876654          455666


Q ss_pred             --cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524           80 --RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (175)
Q Consensus        80 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (175)
                        .++|++|+|+|+++.++...+..++.      ..++|+++++||+|+.+.+.... ....++..++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              89999999999998766655444332      23799999999999865443322 2455778889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 030524          158 NIKLCCHTLNSL  169 (175)
Q Consensus       158 ~v~~~f~~l~~~  169 (175)
                      |++++|+++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998765

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.95  E-value=7.7e-28  Score=172.97  Aligned_cols=153  Identities=14%  Similarity=0.171  Sum_probs=115.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR--   80 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--   80 (175)
                      .++|+++|++|+|||||+|+|++........+..+++  .....++. ...+.+||+||+..+.      .++..++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            5799999999999999999999876443333433333  23333444 5579999999988775      34556665  


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      ++|++|+|+|+++.++..   .|...+..   .++|+++++||+|+.+.+... .....++..++++++++||++|.|++
T Consensus        80 ~~d~vi~V~D~t~~e~~~---~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~  152 (272)
T 3b1v_A           80 RADSILNVVDATNLERNL---YLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD  152 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHH---HHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred             CCCEEEEEecCCchHhHH---HHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence            699999999999876543   34444443   479999999999986544433 35677888889999999999999999


Q ss_pred             HHHHHHHHHHh
Q 030524          161 LCCHTLNSLIT  171 (175)
Q Consensus       161 ~~f~~l~~~~~  171 (175)
                      ++|+++.+.+.
T Consensus       153 el~~~i~~~~~  163 (272)
T 3b1v_A          153 QVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHSCT
T ss_pred             HHHHHHHHHHh
Confidence            99999988653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=2.3e-28  Score=170.53  Aligned_cols=147  Identities=17%  Similarity=0.226  Sum_probs=107.1

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC---cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   79 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   79 (175)
                      .......++|+++|++|+|||||+++|++..+..   .+.++.+.++         ....+.+||+||++.+...+..++
T Consensus         6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~   76 (218)
T 1nrj_B            6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYL   76 (218)
T ss_dssp             ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHH
Confidence            3445577999999999999999999999877543   2333333222         345689999999999998888888


Q ss_pred             cC----CcEEEEEEECC-ChhhHHhHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHhc
Q 030524           80 RD----SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSREL  144 (175)
Q Consensus        80 ~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~~~iiv~nk~D~~~~~~~~------~~~~~~~~~~~  144 (175)
                      .+    +|++|+|+|++ +++++.....|+..+...    ...++|+++++||+|+.+.+...      ..+...++...
T Consensus        77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR  156 (218)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            77    89999999999 889999999998888765    34689999999999997655433      44556666666


Q ss_pred             CCeEEEeccCCCCC
Q 030524          145 NVMFIETSAKAGFN  158 (175)
Q Consensus       145 ~~~~~~~s~~~~~~  158 (175)
                      +++++++|+++|.+
T Consensus       157 ~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHC--------
T ss_pred             hccccccccccccc
Confidence            67777788777654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.94  E-value=9.2e-28  Score=173.04  Aligned_cols=155  Identities=18%  Similarity=0.219  Sum_probs=118.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPS   77 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~   77 (175)
                      .+++|+++|++|+|||||+|+|++........+..+.+.....+...+  ..+.+|||||+..+..          .+..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            468999999999999999999999876555556666666666666555  3578999999877662          2233


Q ss_pred             cc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524           78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (175)
Q Consensus        78 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (175)
                      ++  .++|++|+|+|+++.++...+..++.+.      ++|+++++||+|+.+.+... .....++..++++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            33  6999999999999876655544444332      69999999999986443322 134667788899999999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 030524          156 GFNIKLCCHTLNSLIT  171 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~~  171 (175)
                      |.|++++|+++.+.+.
T Consensus       153 g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999987653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.94  E-value=1.3e-26  Score=166.85  Aligned_cols=157  Identities=20%  Similarity=0.203  Sum_probs=121.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI--   79 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--   79 (175)
                      ..++|+++|++|+|||||+++|++........++.+.+........++.  .+.+||+||...+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            3589999999999999999999998765556666777777777666664  489999999887766      455565  


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      .++|++++|+|+++.+.   ...|...+...  ...|+++++||+|+.+.+....+ ...++..++++++++|+++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            68999999999987642   22333333332  23999999999998644333322 67788888999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030524          160 KLCCHTLNSLITV  172 (175)
Q Consensus       160 ~~~f~~l~~~~~~  172 (175)
                      .++|+.+.+.+..
T Consensus       154 ~~l~~~i~~~~~~  166 (271)
T 3k53_A          154 EELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.94  E-value=3.5e-27  Score=165.04  Aligned_cols=165  Identities=13%  Similarity=0.105  Sum_probs=108.5

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCc----------cccc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ----------ERFR   72 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~   72 (175)
                      .+....++|+++|.+|+|||||+++|++...........+.+......... .....+.+|||||.          +.+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            344567999999999999999999999986321111222212222222233 33357899999994          3445


Q ss_pred             ccccccccC---CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHh----
Q 030524           73 SLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE----  143 (175)
Q Consensus        73 ~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--~~~~~~~~~~----  143 (175)
                      ..+..++..   +|++++|+|++++.+. ....++..+..   .++|+++|+||+|+.+.....  .....+....    
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            555566655   7889999999875332 22334444433   468999999999986533221  1222222332    


Q ss_pred             ---cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          144 ---LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       144 ---~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                         .+++++++||++|.|+.++|++|.+.+..
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence               45699999999999999999999987754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=1.8e-25  Score=171.46  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI   79 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   79 (175)
                      .++|+++|++|+|||||+|+|++... .....+..+.+.....+..++  ..+.+|||||+.++...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            58899999999999999999998753 234445555566666666766  469999999987765433        4468


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      .++|++++|+|++++.+++.+..+...+ ... .++|+++|+||+|+.+....   ..+.+.....++++++||++|.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l-~~l-~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELK-AAH-PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHH-HHC-TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHH-Hhc-CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence            8999999999999988776433333222 222 27999999999998654432   223344432478999999999999


Q ss_pred             HHHHHHHHHHHh
Q 030524          160 KLCCHTLNSLIT  171 (175)
Q Consensus       160 ~~~f~~l~~~~~  171 (175)
                      +++|++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988775

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=1.2e-25  Score=171.57  Aligned_cols=160  Identities=19%  Similarity=0.171  Sum_probs=114.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc----------ccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI   75 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   75 (175)
                      ...++|+++|.+|+|||||+|++++.... ....+..+.+.....+..++.  .+.+|||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35699999999999999999999987643 333444455555556666664  4899999997          3343333


Q ss_pred             c-ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEE
Q 030524           76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFI  149 (175)
Q Consensus        76 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~  149 (175)
                      . .++.++|++++|+|++++.+++.. .|+..+..   .+.|+++++||+|+.+.+....++..+.     ....+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 467899999999999998887765 45555543   4799999999999976655443333222     222367999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhh
Q 030524          150 ETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++||++|.|++++|+.+.+.+..
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHH
Confidence            99999999999999998877653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.93  E-value=1.3e-24  Score=161.94  Aligned_cols=161  Identities=19%  Similarity=0.170  Sum_probs=119.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPS   77 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   77 (175)
                      ...++|+++|++|+|||||+++|.+........+..+.+........++  ..+.+|||||...+..         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998764322222222233333333333  5689999999754321         1223


Q ss_pred             cccCCcEEEEEEECCChh--hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524           78 YIRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (175)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.+...  ..+...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            455799999999999877  67788888888877654 799999999999865432  2455667777889999999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 030524          156 GFNIKLCCHTLNSLITV  172 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~~~  172 (175)
                      |+|++++|+++.+.+..
T Consensus       320 g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TBTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999887754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.93  E-value=2.7e-26  Score=173.48  Aligned_cols=158  Identities=18%  Similarity=0.191  Sum_probs=115.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-------cc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP   76 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~   76 (175)
                      +....++|+++|++|+|||||++++++.... ....+..+.+.........+.. .+.+|||||++++...       +.
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            3456799999999999999999999987753 2333444445555666665543 7899999999877655       34


Q ss_pred             ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (175)
                      .++.++|++|+|+|++..+   ....|+..+...   ++|+++|+||+|+......  ...+.++..++++++++||++|
T Consensus       109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence            4788999999999984333   345565555543   7999999999999765554  5667777788999999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 030524          157 FNIKLCCHTLNSLIT  171 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~  171 (175)
                      .|++++|++|.+.+.
T Consensus       181 ~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          181 KGFDDIGKTISEILP  195 (423)
T ss_dssp             TSTTTHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999999998773

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=4.9e-25  Score=160.58  Aligned_cols=155  Identities=17%  Similarity=0.140  Sum_probs=107.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPS   77 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   77 (175)
                      .+..+|+++|.+|+|||||+|+|++..... ...+..+.+........+  ...+.+|||||..+        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            566789999999999999999999987642 222222222222222233  35799999999765        3445567


Q ss_pred             cccCCcEEEEEEECCChhhHHhHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-C-CeEEEeccC
Q 030524           78 YIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-N-VMFIETSAK  154 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~s~~  154 (175)
                      ++..+|++++|+|++++.+..  ..|+ ..+... ..+.|+++++||+|+.+....    ....+..+ + .+++++||+
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTT
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCC
Confidence            789999999999999874433  3444 334332 247999999999998643220    22233332 3 478999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 030524          155 AGFNIKLCCHTLNSLI  170 (175)
Q Consensus       155 ~~~~v~~~f~~l~~~~  170 (175)
                      +|.|++++|+.+.+.+
T Consensus       156 ~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          156 DERQVAELKADLLALM  171 (301)
T ss_dssp             CHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=4.7e-25  Score=169.18  Aligned_cols=160  Identities=20%  Similarity=0.199  Sum_probs=117.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI   75 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   75 (175)
                      ...++|+++|.+|+|||||++++++... .....+..+.+.....+..++.  .+.+|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            3569999999999999999999997642 2333344444554455556664  689999999          56666554


Q ss_pred             c-ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-----CCeEE
Q 030524           76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFI  149 (175)
Q Consensus        76 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-----~~~~~  149 (175)
                      . .++..+|++++|+|++++..- ....|...+..   .+.|+++|+||+|+.+.++...++..+.+.+.     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 377899999999999875432 22334444433   46999999999999877777667776666655     57999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhh
Q 030524          150 ETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++||++|.|++++|.++.+.+..
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999999887654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.92  E-value=1.2e-23  Score=159.31  Aligned_cols=167  Identities=19%  Similarity=0.192  Sum_probs=106.6

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCC---CCCcccc--cceeeEEEEEEEE-------------C--C----eEE
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTV   58 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~   58 (175)
                      |++....++|+++|+.++|||||+++|.+..   ...+..+  |....+.......             +  +    ...
T Consensus         2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~   81 (408)
T 1s0u_A            2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR   81 (408)
T ss_dssp             ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred             CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence            5666778999999999999999999998643   2233333  3333333222211             1  1    136


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHHH
Q 030524           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEE  136 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~~  136 (175)
                      .+.+||||||++|...+...+..+|++|+|+|++++........++..+.. . ...|+++++||+|+.+...  ...++
T Consensus        82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l-~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-L-GIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T-TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-c-CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            899999999999998888888899999999999854211222222222222 1 2357999999999976443  23455


Q ss_pred             HHHHHHh---cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          137 GEAKSRE---LNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       137 ~~~~~~~---~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      .+.++..   .+++++++||++|+|+.+++++|.+.+.
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6666665   3579999999999999999999987654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.92  E-value=7.4e-24  Score=160.25  Aligned_cols=165  Identities=16%  Similarity=0.087  Sum_probs=116.4

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEE---------EE-------EE---ECCeEEEEEEEe
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLS---------KT-------MY---LEDRTVRLQLWD   64 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------~~-------~~---~~~~~~~~~i~D   64 (175)
                      +.....++|+++|++|+|||||+++|++............ +...         ..       ..   .......+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEE
Confidence            4556779999999999999999999998543221100000 0000         00       00   012236899999


Q ss_pred             CCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHH
Q 030524           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR  142 (175)
Q Consensus        65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~~  142 (175)
                      |||+++|...+..++.++|++|+|+|++++.++.....|+..+....  ..|+++++||+|+.+..+.  ..++...+..
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998776777777776655442  3589999999998653321  1122333333


Q ss_pred             hc---CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          143 EL---NVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       143 ~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      ..   +++++++||++|+|+.++|++|.+.+.
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            22   568999999999999999999987653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=6.8e-25  Score=162.02  Aligned_cols=158  Identities=18%  Similarity=0.119  Sum_probs=115.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---CC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSYIR---DS   82 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~   82 (175)
                      .+|+|+|.+|+|||||+++|+.........+..+.+.....+..++. ..+.+||+||..+    +..+...+++   ++
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36899999999999999999986533111111122222223334432 3689999999643    3334444544   59


Q ss_pred             cEEEEEEECCC---hhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEeccCC
Q 030524           83 SVAVVVYDVAS---RQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKA  155 (175)
Q Consensus        83 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~  155 (175)
                      |++|+|+|+++   +.+++.+..|+.++..+..  .++|+++|+||+|+....    ...+.++..++  ++++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7889999999998887653  579999999999986432    34566666666  6899999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 030524          156 GFNIKLCCHTLNSLITV  172 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~~~  172 (175)
                      ++|++++|.+|.+.+..
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999988754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=4.4e-24  Score=158.20  Aligned_cols=116  Identities=18%  Similarity=0.254  Sum_probs=100.0

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D  125 (175)
                      .+.+.+||++|++.++..|..++.+++++|||||+++          ..++++...|+..+..... .++|+++++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            4679999999999999999999999999999999998          5679999999998887533 6899999999999


Q ss_pred             CCCCC---------------CCCHHHHHHHHH-----------hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          126 LVEKR---------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       126 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +.+++               .....++..++.           ..++.+++|||++|.|+.++|.++.+.+..
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            85332               356778888876           356789999999999999999999988764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=3.3e-24  Score=164.63  Aligned_cols=152  Identities=20%  Similarity=0.265  Sum_probs=114.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc-cccc--------ccccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY   78 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~   78 (175)
                      .++|+++|.||+|||||+|+|++... .....+..+.+.....+..++  ..+.+|||||.. ++..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            38999999999999999999998753 233344555566666666766  458999999987 5543        23456


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (175)
                      +.++|++|+|+|++++.+++... .++.+     .+.|+++|+||+|+.+.  ....+...++. .+++++++||++|+|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            78999999999999887775533 22222     37899999999998643  34444444432 457899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      ++++|++|.+.+.
T Consensus       392 i~eL~~~l~~~~~  404 (482)
T 1xzp_A          392 LEKLEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=4.1e-24  Score=151.19  Aligned_cols=164  Identities=12%  Similarity=0.121  Sum_probs=107.5

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc--cceeeEEEEEEEECCeEEEEEEEeCCCc-----------ccc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERF   71 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~   71 (175)
                      +....++|+++|++|+|||||++++++........+  +.+.+........++  ..+.+|||||.           ..+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345679999999999999999999999877655444  334444444555555  46899999993           234


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHh
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVS------IEEGEAKSRE  143 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~------~~~~~~~~~~  143 (175)
                      ...+..+++++|++|+|+|+++...  ....++..+....+  ...|+++|+||+|+.+.....      ....+.++..
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            4455566778999999999875433  12233333332221  246999999999986543332      2357778888


Q ss_pred             cCCeEEEeccCCC-----CCHHHHHHHHHHHHhh
Q 030524          144 LNVMFIETSAKAG-----FNIKLCCHTLNSLITV  172 (175)
Q Consensus       144 ~~~~~~~~s~~~~-----~~v~~~f~~l~~~~~~  172 (175)
                      ++..++.++...+     .++.++|..+.+.+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            8888888877644     6889999887776543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.91  E-value=9.2e-24  Score=154.53  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=99.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D  125 (175)
                      .+.+++||++|+++++..|.+|+.+++++|+|||++          +..++.+...|+..+..... .++|+++++||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            378999999999999999999999999999999665          67889888888888876543 6899999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHH----------HhcCCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          126 LVEKR----------------QVSIEEGEAKS----------RELNVMFIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       126 ~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      +.+++                ..+.+++..++          ...++.++++||+++.||+++|..+.+.+..+
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            86533                46777887773          34567889999999999999999999988753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.91  E-value=7.8e-24  Score=163.07  Aligned_cols=158  Identities=19%  Similarity=0.180  Sum_probs=110.3

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCC-------CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   77 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   77 (175)
                      ..+..++|+++|++++|||||+++|++..       ...+..+..+.+........++  ..+.+|||||+++|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            33567999999999999999999999865       1222222233333223333444  57999999999999999999


Q ss_pred             cccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHHhc----CCeE
Q 030524           78 YIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSREL----NVMF  148 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~~~~~~~~~~~~----~~~~  148 (175)
                      .+.++|++|+|+|++++   .+.+.+    ..+. .  .++|.++++||+|+.++.  +....+...++...    ++++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~-~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHM----LILD-H--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHH----HHHH-H--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHH----HHHH-H--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            99999999999999873   333322    2222 2  368889999999986432  11233445555554    5799


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHh
Q 030524          149 IETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       149 ~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +++||++|+|+.+++++|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=1.6e-23  Score=159.94  Aligned_cols=152  Identities=18%  Similarity=0.218  Sum_probs=103.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI   79 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   79 (175)
                      .+|+++|.||||||||+|+|++.... ....+..+.+........++.  .+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999987643 233445555666666667764  479999999653         234566788


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHHHhcCC-eEEEeccCCCC
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSRELNV-MFIETSAKAGF  157 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~  157 (175)
                      +++|++++|+|++++.+...  .++..+...  .++|+++++||+|+.+..   ..+. ..+. .+++ +++++||++|.
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~  151 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNI  151 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence            99999999999987644332  222222222  268999999999974321   1222 3343 5676 78999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 030524          158 NIKLCCHTLNSLIT  171 (175)
Q Consensus       158 ~v~~~f~~l~~~~~  171 (175)
                      |+.++|+++.+.+.
T Consensus       152 gv~~L~~~i~~~l~  165 (439)
T 1mky_A          152 NLDTMLETIIKKLE  165 (439)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcc
Confidence            99999999988765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.90  E-value=1.5e-23  Score=159.85  Aligned_cols=157  Identities=16%  Similarity=0.183  Sum_probs=105.2

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CcccccceeeEEEEEEEEC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLE   54 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   54 (175)
                      ....++|+++|++++|||||+++|++....                               .+..+..+++.....+.  
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~--   91 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE--   91 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe--
Confidence            346799999999999999999999654210                               11112233333333333  


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhh---HHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR  130 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~  130 (175)
                      .....+.+|||||+++|...+...+.++|++|+|+|++++..   |+....+.+.+......++| +++++||+|+....
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~  171 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN  171 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence            334579999999999999999999999999999999987632   22111222222222224577 89999999985321


Q ss_pred             ------CCCHHHHHHHHHhcC------CeEEEeccCCCCCHHHHHH
Q 030524          131 ------QVSIEEGEAKSRELN------VMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus       131 ------~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~f~  164 (175)
                            +....+...++...+      ++++++||++|+|+.++++
T Consensus       172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                  112233444555544      4799999999999999654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.90  E-value=3.5e-23  Score=162.12  Aligned_cols=160  Identities=19%  Similarity=0.216  Sum_probs=114.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC--CCCc-----c------cccceeeEE----EEEEEE-CCeEEEEEEEeCCCc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNT-----Y------QATIGIDFL----SKTMYL-EDRTVRLQLWDTAGQ   68 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~~-----~------~~~~~~~~~----~~~~~~-~~~~~~~~i~D~~G~   68 (175)
                      .+..+|+++|+.++|||||+++|+...  ....     .      ....+++..    ...+.. ++..+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            345799999999999999999998631  1100     0      001122221    111111 455688999999999


Q ss_pred             ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC--
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--  146 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~--  146 (175)
                      .+|...+...+..+|++|+|+|++++.+.+....|.....    .++|+++++||+|+....  ......++...+++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999999999999999999999999888777777765543    479999999999986533  22334556666676  


Q ss_pred             -eEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          147 -MFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       147 -~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                       .++++||++|.|+.++|+++.+.+.+
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhccc
Confidence             48999999999999999999887643

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.90  E-value=2.7e-23  Score=162.96  Aligned_cols=159  Identities=18%  Similarity=0.211  Sum_probs=112.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCC--CCC-----c------ccccceeeEEEEEEEE-----CCeEEEEEEEeCCCcc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----T------YQATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQE   69 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~--~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~   69 (175)
                      +-.+|+++|+.++|||||+++|+...  ...     .      .....+++.......+     ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35799999999999999999998632  110     0      0112233332222222     5567899999999999


Q ss_pred             cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC---
Q 030524           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---  146 (175)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~---  146 (175)
                      +|...+...+..+|++|+|+|++++.+.+....|.....    .++|+++++||+|+....  ......++...+++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999877777777765543    468999999999986533  23334556666676   


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          147 MFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       147 ~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      .++++||++|.|++++|+++.+.+.+
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCCC
Confidence            48999999999999999999887643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.90  E-value=2.2e-23  Score=149.18  Aligned_cols=163  Identities=10%  Similarity=0.087  Sum_probs=105.5

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCC-CCccccc-ceeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------   75 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------   75 (175)
                      ....++|+++|++|+|||||++++++... .....++ .+.+........++  ..+.+|||||+..+....        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            34579999999999999999999998763 3333333 33444444445555  468999999986654322        


Q ss_pred             ---cccccCCcEEEEEEECCChhhH-HhHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCCCCCH-------HHHHHHHHh
Q 030524           76 ---PSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGN-KTDLVEKRQVSI-------EEGEAKSRE  143 (175)
Q Consensus        76 ---~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~n-k~D~~~~~~~~~-------~~~~~~~~~  143 (175)
                         ..+++.+|++|+|+|+++.... ..+..++..+.... ...|.++++| |+|+... ....       .+...++..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence               2367899999999999862221 12333333332111 1356666666 9998632 1111       223445555


Q ss_pred             cCCe---E--EEeccCCCCCHHHHHHHHHHHHhh
Q 030524          144 LNVM---F--IETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       144 ~~~~---~--~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      .+..   +  +++||++|.|+.++|.++.+.+..
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            5532   2  789999999999999999887765

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.90  E-value=4.7e-24  Score=163.10  Aligned_cols=152  Identities=19%  Similarity=0.233  Sum_probs=102.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI   79 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   79 (175)
                      .++|+++|++|+|||||+|+|++.... ....+..+.+.....+..++  ..+.+|||||..++...+        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            578999999999999999999986432 33344444455555556666  458999999976554332        3467


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      .++|++++|+|++++.+... ..++..+     ...|+++|+||+|+.+.....  ..+.+.  .+.+++++|+++|.|+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi  371 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI  371 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence            89999999999998766544 3444443     247999999999987654432  111111  3568999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030524          160 KLCCHTLNSLITV  172 (175)
Q Consensus       160 ~~~f~~l~~~~~~  172 (175)
                      +++|++|.+.+..
T Consensus       372 ~eL~~~i~~~~~~  384 (462)
T 3geh_A          372 DSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.90  E-value=3.8e-24  Score=154.20  Aligned_cols=164  Identities=12%  Similarity=0.200  Sum_probs=94.0

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCC-Ccc-------cccceeeEEEEEEEECCeEEEEEEEeCCCcccc---
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---   71 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---   71 (175)
                      |+..-..++|+++|.+|+|||||+|+|++.... ..+       .++.+.+.....+..++..+.+.+|||||....   
T Consensus         2 p~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~   81 (274)
T 3t5d_A            2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN   81 (274)
T ss_dssp             -----CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred             CCcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence            445556799999999999999999998876544 333       455556666666655666678999999997322   


Q ss_pred             ----cccc-------ccccc-------------CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           72 ----RSLI-------PSYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        72 ----~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                          ..+.       ..++.             .+|+++++++.++......-..++..+.    .++|+++|+||+|+.
T Consensus        82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~----~~~pvi~V~nK~D~~  157 (274)
T 3t5d_A           82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTL  157 (274)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT----TTSCEEEEESSGGGS
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh----ccCCEEEEEeccCCC
Confidence                1121       22222             3789999997665321122233333333    279999999999975


Q ss_pred             CCCCCC--HHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          128 EKRQVS--IEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       128 ~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ...+..  .....+.+...+++++++|+.+++|+.+++.+|.+.+
T Consensus       158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            432221  2234555667789999999999999999999988754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.90  E-value=5.5e-23  Score=152.33  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=94.0

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~  124 (175)
                      ..+.+.+||++|+++++..|..|+++++++|+|||++          +..++++...|+..+..... .++|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          78899999999998876543 689999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHh----------------cCCeEEEeccCCCCCHHHHHHHHH
Q 030524          125 DLVEKRQ--V-------------------SIEEGEAKSRE----------------LNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus       125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |+.+++.  +                   +.+++..++..                ..+.+++|||++++||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854321  1                   13455555432                224579999999999999999998


Q ss_pred             HHHhh
Q 030524          168 SLITV  172 (175)
Q Consensus       168 ~~~~~  172 (175)
                      +.+..
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.90  E-value=5e-23  Score=156.03  Aligned_cols=164  Identities=18%  Similarity=0.188  Sum_probs=111.1

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCC---CCCcccc--cceeeEEEEEEEE-------------C--C----eEEEEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTVRLQ   61 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   61 (175)
                      ....++|+++|++++|||||+++|++..   ...+..+  |....+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            3456999999999999999999998643   2233333  3332333222211             1  1    136899


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHH
Q 030524           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEA  139 (175)
Q Consensus        62 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~~~~~  139 (175)
                      +|||||+++|...+...+..+|++|+|+|++++........++..+...  ...|+++++||+|+.+...  ...++.+.
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~~  164 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKE  164 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence            9999999999888888888999999999998642112222222222222  2357899999999865332  12334445


Q ss_pred             HHHh---cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          140 KSRE---LNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       140 ~~~~---~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      ++..   .+++++++||++|+|+.+++++|.+.+.
T Consensus       165 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          165 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            5544   3579999999999999999999987654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=8.5e-23  Score=148.88  Aligned_cols=158  Identities=15%  Similarity=0.168  Sum_probs=108.8

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcc---------cccccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLI   75 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~   75 (175)
                      ..+..+|+++|++|+|||||+|++++..... ...+..+.+........++  ..+.+|||||+.         .+....
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~   82 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA   82 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence            3456789999999999999999999876431 1122121121222222333  478999999987         344455


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccC
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAK  154 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (175)
                      ..++..+|++++|+|+++   +.....|+.....  ..+.|+++++||+|+.............+...++. .++++|++
T Consensus        83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~  157 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  157 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence            677899999999999976   3333334433332  24799999999999864222223445556666676 79999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 030524          155 AGFNIKLCCHTLNSLI  170 (175)
Q Consensus       155 ~~~~v~~~f~~l~~~~  170 (175)
                      +|.|+.++++.+.+.+
T Consensus       158 ~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          158 TGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTTTHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999988654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.90  E-value=1.6e-25  Score=173.31  Aligned_cols=159  Identities=17%  Similarity=0.182  Sum_probs=113.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ++.+|+++|++|+|||||+++|.+..+.....++.+.++....+..++ ...+.||||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            568999999999999999999998655444444444444333333322 2368999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHH---HHhc--CCeEEEeccCCCCCHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAK---SREL--NVMFIETSAKAGFNIKL  161 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~s~~~~~~v~~  161 (175)
                      |+|++++...+....    +......++|+++++||+|+.+..... ..+....   +..+  .++++++||++|.|+.+
T Consensus        82 VVDa~dg~~~qt~e~----l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVES----IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHH----HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHH----HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            999998654433322    222333578999999999986432211 1111111   1222  24899999999999999


Q ss_pred             HHHHHHHHHh
Q 030524          162 CCHTLNSLIT  171 (175)
Q Consensus       162 ~f~~l~~~~~  171 (175)
                      +|+++...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999887653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.90  E-value=1.6e-22  Score=150.70  Aligned_cols=161  Identities=19%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             cee-EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 030524            9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSY   78 (175)
Q Consensus         9 ~~~-i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~   78 (175)
                      .++ |+++|++|+|||||+|+|.+........+..+.+.....+.+++  ..+.+|||+|.-         .+...+ ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            355 99999999999999999998765433334444455666677777  468999999962         122222 24


Q ss_pred             ccCCcEEEEEEECCChh--hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHhc---CCeEEEec
Q 030524           79 IRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSREL---NVMFIETS  152 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~s  152 (175)
                      +..+|++++|+|++++.  ..+....|...+......+.|+++|+||+|+...... ....+..++..+   +.+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            78899999999999876  4555555555444433367899999999998643210 011222333444   34789999


Q ss_pred             cCCCCCHHHHHHHHHHHHhh
Q 030524          153 AKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +++|.|+++++++|.+.+..
T Consensus       335 A~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhcc
Confidence            99999999999999887654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.90  E-value=1.3e-22  Score=150.79  Aligned_cols=116  Identities=20%  Similarity=0.216  Sum_probs=91.1

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD  125 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D  125 (175)
                      .+.+.+||++|++.++..|..++.+++++|||+|+++          ..++.+...|+..+.... ..++|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            3689999999999999999999999999999999999          779999999999887753 26899999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHH--------H---hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          126 LVEKR----------------QVSIEEGEAKS--------R---ELNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       126 ~~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +.+++                .....++..++        .   ..++.++++||++++|++++|.++.+.+..
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            85322                25667777765        1   346789999999999999999999888764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.5e-24  Score=160.50  Aligned_cols=161  Identities=16%  Similarity=0.244  Sum_probs=90.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-Cccc--------ccceeeEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~   71 (175)
                      ..++|+++|++|+|||||+++|++.... ..+.        ++.+.+........++....+.+|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            3689999999999999999998775432 2221        34444444444445566778999999998       556


Q ss_pred             ccccc-------ccccCC-------------cEEEEEEECCChhhHHhHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524           72 RSLIP-------SYIRDS-------------SVAVVVYDVASRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (175)
Q Consensus        72 ~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiv~nk~D~~~~~  130 (175)
                      ..++.       .++.++             |+++|+++.+ ..++..+.. ++..+    ..++|+++|+||+|+...+
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            66654       444433             3455544431 344555442 33322    3679999999999987554


Q ss_pred             CCCH--HHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhhhh
Q 030524          131 QVSI--EEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCI  174 (175)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~~  174 (175)
                      ++..  .++..++..++++++++|+++|.+ .+.|.++.+.+...+
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            4433  466777888899999999999999 888888888776543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.4e-23  Score=143.51  Aligned_cols=116  Identities=17%  Similarity=0.295  Sum_probs=90.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCC---cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccC--
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD--   81 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   81 (175)
                      ...++|+++|++|+|||||++++++..+..   ...++.+.         +.....+.+||+||++.+...+..++.+  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            467899999999999999999999876543   12222221         1134568999999999998888888776  


Q ss_pred             --CcEEEEEEECC-ChhhHHhHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCC
Q 030524           82 --SSVAVVVYDVA-SRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        82 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~nk~D~~~~~~  131 (175)
                        +|++|+|||++ +++++..+..|+..+....    ..+.|+++|+||+|+.+...
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence              89999999999 8999999989888887653    35899999999999865443

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.89  E-value=6.9e-24  Score=163.68  Aligned_cols=153  Identities=18%  Similarity=0.205  Sum_probs=97.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC--CCc---------------------------ccccceeeEEEEEEEECCeEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--DNT---------------------------YQATIGIDFLSKTMYLEDRTV   58 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   58 (175)
                      ..+||+++|++|+|||||+++|++...  ...                           .....+++.......++....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            469999999999999999999976511  100                           000112222222222333446


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHh-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 030524           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-----TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~  133 (175)
                      .+.+|||||+++|...+..++.++|++|+|+|+++++.+..     ...+...+.... ...|+++++||+|+.+.++..
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHHH
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHHH
Confidence            79999999999999999999999999999999998754322     111222222222 234699999999987543333


Q ss_pred             HHHH----HHHHHhc-----CCeEEEeccCCCCCHHH
Q 030524          134 IEEG----EAKSREL-----NVMFIETSAKAGFNIKL  161 (175)
Q Consensus       134 ~~~~----~~~~~~~-----~~~~~~~s~~~~~~v~~  161 (175)
                      .++.    ..+....     +++++++||++|+|+.+
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            3333    3333333     46899999999999875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=2.1e-23  Score=159.27  Aligned_cols=152  Identities=16%  Similarity=0.158  Sum_probs=99.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI   79 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~   79 (175)
                      ..+|+++|.+|||||||+|+|++..... ...+..+.+.....  .......+.+|||||++        .+...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~--~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEE--CTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEE--EEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            3689999999999999999999875431 22222222333333  33233469999999975        5666777889


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCC
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (175)
                      .++|++|+|+|+.++.+...  .++..+..  ..++|+++++||+|+.+...    +..++. .+++ .++++||++|.|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence            99999999999988755443  33333333  25789999999999864321    111222 3565 789999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      +.++|+++.+.+.
T Consensus       152 v~~L~~~i~~~l~  164 (436)
T 2hjg_A          152 LGDLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHHHTGG
T ss_pred             hHHHHHHHHHhcC
Confidence            9999999988764

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.89  E-value=3.3e-24  Score=163.54  Aligned_cols=159  Identities=18%  Similarity=0.264  Sum_probs=104.7

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcC--CCCCccc---------------------------ccceeeEEEEEEEECC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQ---------------------------ATIGIDFLSKTMYLED   55 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~   55 (175)
                      +....++|+++|++++|||||+++|+..  .......                           ...+.+.......++.
T Consensus         2 ~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~   81 (435)
T 1jny_A            2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET   81 (435)
T ss_dssp             --CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC
T ss_pred             CCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec
Confidence            3456799999999999999999999864  2221100                           0111222222222333


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHh----cCCCC-cEEEEEeCCCCCCCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE----RGSDV-IIVLVGNKTDLVEKR  130 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~-~~iiv~nk~D~~~~~  130 (175)
                      ....+.+|||||+++|...+..++..+|++|+|+|+++ .+|+....|..+...+    ...++ |+++++||+|+.+..
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            44679999999999999999999999999999999998 6676543322222211    11244 588999999986521


Q ss_pred             ------CCCHHHHHHHHHhcC-----CeEEEeccCCCCCHHHHHH
Q 030524          131 ------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus       131 ------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~f~  164 (175)
                            +....+.+.++..++     ++++++||++|+|+.+++.
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                  112345666666665     6899999999999986543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=4.3e-22  Score=152.09  Aligned_cols=159  Identities=21%  Similarity=0.219  Sum_probs=106.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----------   75 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   75 (175)
                      ..++|+++|++|+|||||+|++++.... ....+..+.+.....+..++.  .+.+|||+|..++....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4689999999999999999999987542 222333444555556667775  57899999974332211           


Q ss_pred             -cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-----HHHhcCCeEE
Q 030524           76 -PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFI  149 (175)
Q Consensus        76 -~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~  149 (175)
                       ..++..+|++++++|++++.+.+..  ++......  .+.|+++++||+|+.+.+.....+...     +....+++++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence             2356789999999999887655442  22222222  479999999999987654443333322     2223357999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhh
Q 030524          150 ETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++||++|.|++++|+.+.+.+..
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.89  E-value=6.4e-23  Score=150.62  Aligned_cols=117  Identities=21%  Similarity=0.227  Sum_probs=95.9

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~  124 (175)
                      ..+.+++||++|++.++..|..|+++++++|+|||++          +..++.+...|+..+..... .++|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            3478999999999999999999999999999999998          77899999999988877644 689999999999


Q ss_pred             CCCCC---------------CCCCHHHHHHHHHh---------------------------cCCeEEEeccCCCCCHHHH
Q 030524          125 DLVEK---------------RQVSIEEGEAKSRE---------------------------LNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus       125 D~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~~s~~~~~~v~~~  162 (175)
                      |+.++               ...+.+++.+++..                           .++.++++||+++.+++.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            98532               11245555444322                           2367899999999999999


Q ss_pred             HHHHHHHHhh
Q 030524          163 CHTLNSLITV  172 (175)
Q Consensus       163 f~~l~~~~~~  172 (175)
                      |..+.+.|..
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=4.4e-23  Score=157.32  Aligned_cols=153  Identities=18%  Similarity=0.187  Sum_probs=103.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC--CCc----------cccc-------------------ceeeEEEEEEEECC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DNT----------YQAT-------------------IGIDFLSKTMYLED   55 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~   55 (175)
                      ...++|+++|++++|||||+++|++...  ...          ...+                   .+++..........
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4569999999999999999999986531  110          0011                   11111111122223


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCCC--
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-IIVLVGNKTDLVEKRQV--  132 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nk~D~~~~~~~--  132 (175)
                      ....+.+|||||+++|...+..++.++|++|+|+|++++... ....++..+..   .++ |+++++||+|+.+..+.  
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~---~~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASL---LGIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCEEEEEEECTTTTTSCHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEEcCcCCcccHHHH
Confidence            345799999999999999888899999999999999986432 23344433332   234 68999999998653211  


Q ss_pred             --CHHHHHHHHHhcC-----CeEEEeccCCCCCHHHHH
Q 030524          133 --SIEEGEAKSRELN-----VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       133 --~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~f  163 (175)
                        ...+...++..++     ++++++||++|+|+.++|
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence              2344566677777     689999999999998743

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.88  E-value=4.8e-22  Score=156.04  Aligned_cols=158  Identities=22%  Similarity=0.219  Sum_probs=106.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcc----cccceeeEEEEEE------------EECCeEEEEEEEeCCCccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTM------------YLEDRTVRLQLWDTAGQER   70 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~   70 (175)
                      .++.+|+++|++++|||||+++|++.......    ..+.+..+.....            ..+.....+.+|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            35689999999999999999999875432211    1122211111100            0001112589999999999


Q ss_pred             ccccccccccCCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-------------CH
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-------------SI  134 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-------------~~  134 (175)
                      |..++..++..+|++|+|+|+++   +.+++.+..    +..   .++|+++++||+|+.+....             ..
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999998   555554432    222   47899999999998642211             00


Q ss_pred             H----------HHHHHHHhc---------------CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          135 E----------EGEAKSREL---------------NVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       135 ~----------~~~~~~~~~---------------~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      .          +......+.               .++++++||++|.|+.++++++...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0          111112222               238999999999999999999987654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.88  E-value=7.7e-23  Score=154.36  Aligned_cols=160  Identities=14%  Similarity=0.114  Sum_probs=110.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCC-------CCCc-------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDK-------FDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   73 (175)
                      ..++|+++|++++|||||+++|++..       +...       .....+.+.......++.....+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998731       0000       001222333323333433445789999999999998


Q ss_pred             cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHhcC----
Q 030524           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN----  145 (175)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~---~~~~~~~~~~~~~~----  145 (175)
                      .+..++..+|++|+|+|++++...+. ..++..+..   .++| +++++||+|+.+..+   ....+.+.++..++    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            88889999999999999998643333 333333322   3688 688999999864211   11235566676665    


Q ss_pred             -CeEEEeccCCCCC----------HHHHHHHHHHHHh
Q 030524          146 -VMFIETSAKAGFN----------IKLCCHTLNSLIT  171 (175)
Q Consensus       146 -~~~~~~s~~~~~~----------v~~~f~~l~~~~~  171 (175)
                       ++++++||++|.|          +.++++.|.+.+.
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence             5899999999764          8899998877553

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.88  E-value=1.1e-22  Score=151.95  Aligned_cols=145  Identities=10%  Similarity=0.050  Sum_probs=104.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      +|+++|++++|||||+++|+      ....|.  +.....  +......+.+|||||+++|...+...+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi--~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSS--DITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEES--SSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEE--EeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998      111122  222222  33333469999999999998888888899999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCCCC--HHHHHHHHHhcC---CeEEE--eccCC---CCC
Q 030524           91 VASRQSFLNTSKWIDEVRTERGSDVII-VLVGN-KTDLVEKRQVS--IEEGEAKSRELN---VMFIE--TSAKA---GFN  158 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~n-k~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~s~~~---~~~  158 (175)
                       +. ..+...+.++..+..   .++|. ++++| |+|+ ++....  .++.+.++...+   +++++  +||++   |+|
T Consensus        93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             53 334445555554443   35776 88888 9998 432211  144555555543   69999  99999   999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      ++++++.|.+.+.
T Consensus       167 i~~L~~~l~~~~~  179 (370)
T 2elf_A          167 VDELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999988754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=2.8e-23  Score=157.20  Aligned_cols=162  Identities=19%  Similarity=0.171  Sum_probs=111.4

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcC--------CCCCc-------ccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (175)
                      .....++|+++|++++|||||+++|++.        .+...       .....+.+........+.....+.+|||||++
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            3456799999999999999999999873        11100       00122333333333344444678999999999


Q ss_pred             cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHhcC
Q 030524           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN  145 (175)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~---~~~~~~~~~~~~~~  145 (175)
                      +|...+..++.++|++|+|+|++++... ....++..+..   .++| +++++||+|+.+..+   ....+.+.++..++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            9999898999999999999999886533 34445544433   3678 889999999864211   11234556666665


Q ss_pred             -----CeEEEeccCCCCC------------------HHHHHHHHHHHH
Q 030524          146 -----VMFIETSAKAGFN------------------IKLCCHTLNSLI  170 (175)
Q Consensus       146 -----~~~~~~s~~~~~~------------------v~~~f~~l~~~~  170 (175)
                           ++++++||++|.|                  +.++++.|.+.+
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI  210 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence                 6899999999987                  677777776644

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.88  E-value=2.4e-23  Score=159.96  Aligned_cols=155  Identities=17%  Similarity=0.237  Sum_probs=92.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC--CCCCc-----------------------------ccccceeeEEEEEEEECC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLED   55 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   55 (175)
                      ...++|+++|++++|||||+++|+..  .....                             .....+++.....+..+ 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            45689999999999999999999752  11100                             00111111111122223 


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC-
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR-  130 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~-  130 (175)
                       ...+.+||||||++|...+...+..+|++|+|+|++++   .+|+....+.+.+......++| +++++||+|+.+.. 
T Consensus       120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence             35799999999999999999999999999999999986   3443322333333333335677 99999999985321 


Q ss_pred             -----CCCHHHHHHHHHhc-------CCeEEEeccCCCCCHHHHH
Q 030524          131 -----QVSIEEGEAKSREL-------NVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       131 -----~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~f  163 (175)
                           +....+...++...       +++++++||++|+|+.++|
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11223456666655       4579999999999998765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.87  E-value=2.6e-22  Score=155.75  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC-----------------CCcc-----cccceeeEEEEEEEECCeEEEEEEEeC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-----------------DNTY-----QATIGIDFLSKTMYLEDRTVRLQLWDT   65 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-----------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (175)
                      +..+|+++|++|+|||||+++|+....                 ..++     ....++......+...+  +.+.+|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            468999999999999999999972110                 0000     01112222233333343  67999999


Q ss_pred             CCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      ||+.+|...+..++..+|++|+|+|++++.+.+....|. .+.   ..++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999876666655443 222   24789999999999853

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.87  E-value=2.9e-24  Score=165.07  Aligned_cols=157  Identities=20%  Similarity=0.183  Sum_probs=106.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .++.+|+++|++++|||||+++|.+........+..+.+.....+..++  ..+.+||||||+.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4678999999999999999999987554433333333232222222333  36899999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHH--HHHHHHHhcC--CeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIE--EGEAKSRELN--VMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~--~~~~~~~~~~--~~~~~~s~~~~~~v~  160 (175)
                      +|+|++++...+.. .++....   ..++|+++++||+|+.+...  ....  +...++..++  ++++++||++|.|+.
T Consensus        80 LVVda~~g~~~qT~-e~l~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           80 LVVAADDGVMPQTI-EAIQHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EEEETTTBSCTTTH-HHHHHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             EEeecccCccHHHH-HHHHHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            99999874322111 2222222   24789999999999864211  1000  0001122233  689999999999999


Q ss_pred             HHHHHHHHH
Q 030524          161 LCCHTLNSL  169 (175)
Q Consensus       161 ~~f~~l~~~  169 (175)
                      ++|+++...
T Consensus       156 eLle~I~~~  164 (501)
T 1zo1_I          156 ELLDAILLQ  164 (501)
T ss_dssp             THHHHTTTT
T ss_pred             hhhhhhhhh
Confidence            999998653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.87  E-value=5.3e-23  Score=162.18  Aligned_cols=154  Identities=16%  Similarity=0.219  Sum_probs=101.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcc-------------------------------cccceeeEEEEEEEECC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------------------------QATIGIDFLSKTMYLED   55 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   55 (175)
                      ...++|+++|++|+|||||+++|++.......                               .+..+++.....+..  
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~--  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence            45799999999999999999999875321110                               011222222222222  


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHhHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSDV-IIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~-~~iiv~nk~D~~~~~~  131 (175)
                      ....+.||||||+++|...+..++.++|++|+|+|++++.   ++.....+...+......++ |+++++||+|+.+..+
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            3457999999999999999999999999999999998753   11111222222222222344 5899999999875332


Q ss_pred             CC----HHHHHHHHHhc-----CCeEEEeccCCCCCHHHH
Q 030524          132 VS----IEEGEAKSREL-----NVMFIETSAKAGFNIKLC  162 (175)
Q Consensus       132 ~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~  162 (175)
                      ..    ..+...++...     +++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            22    22333344444     358999999999999865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.87  E-value=1e-22  Score=156.18  Aligned_cols=155  Identities=17%  Similarity=0.152  Sum_probs=101.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC--------ccccccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIPSY   78 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~   78 (175)
                      +...+|+++|.+|||||||+|+|++..... ...+.+.+..............+.+|||||        ++.+...+..+
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            346799999999999999999999875431 122333344444444444445799999999        67777788888


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (175)
                      +.++|++|+|+|..++  +.....|+..+...  .++|+++++||+|+.+...    ...++ ...+. ..+++||.+|.
T Consensus       100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~iSA~~g~  170 (456)
T 4dcu_A          100 MDEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPISGTHGL  170 (456)
T ss_dssp             HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------CCS-GGGSSSSEEECCTTTCT
T ss_pred             HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHH-HHcCCCceEEeeccccc
Confidence            9999999999998764  33333444444433  5799999999999753221    11111 12343 56799999999


Q ss_pred             CHHHHHHHHHHHHh
Q 030524          158 NIKLCCHTLNSLIT  171 (175)
Q Consensus       158 ~v~~~f~~l~~~~~  171 (175)
                      |+.++|+.+.+.+.
T Consensus       171 gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          171 GLGDLLDAVAEHFK  184 (456)
T ss_dssp             THHHHHHHHHTTGG
T ss_pred             chHHHHHHHHhhcc
Confidence            99999999887654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.86  E-value=7.6e-23  Score=156.80  Aligned_cols=152  Identities=17%  Similarity=0.215  Sum_probs=102.0

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcC--CCCCc-----------------------------ccccceeeEEEEEEEEC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLE   54 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~   54 (175)
                      ....++|+++|++++|||||+++|++.  .....                             .....+++.....  ++
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~--~~   81 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK--FE   81 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE--EE
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE--Ee
Confidence            346799999999999999999999864  11110                             0011122222222  23


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHH---hHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~  127 (175)
                      .....+.+|||||+++|...+..++..+|++|+|+|++++.   +|+   ....++.... .  .++| +++++||+|+.
T Consensus        82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~--~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T--LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H--TTCCEEEEEEECGGGG
T ss_pred             cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H--cCCCeEEEEEEccccc
Confidence            33467999999999999999999999999999999998763   232   2222222222 1  3565 89999999986


Q ss_pred             CCCC----CCHHHHHHHHHhcC-----CeEEEeccCCCCCHHHH
Q 030524          128 EKRQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKLC  162 (175)
Q Consensus       128 ~~~~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~  162 (175)
                      +..+    ....+...++..++     ++++++||++|+|+.++
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            3211    12234555566665     68999999999998743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.85  E-value=9.6e-22  Score=161.50  Aligned_cols=161  Identities=17%  Similarity=0.124  Sum_probs=109.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCC-------C-----C--cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------D-----N--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~-------~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      ....++|+++|++++|||||+++|++...       .     +  ....+.+++.......++.....+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            34569999999999999999999987310       0     0  01122333332222333344467999999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHhcC--
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN--  145 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~---~~~~~~~~~~~~~~--  145 (175)
                      ...+..++..+|++|+|+|++++... ....++..+..   .++| +++++||+|+.+..+   ....+...++..++  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            99888899999999999999986432 34444444433   2678 788999999864221   11245566676665  


Q ss_pred             ---CeEEEeccCCC--------CCHHHHHHHHHHHH
Q 030524          146 ---VMFIETSAKAG--------FNIKLCCHTLNSLI  170 (175)
Q Consensus       146 ---~~~~~~s~~~~--------~~v~~~f~~l~~~~  170 (175)
                         ++++++||++|        .|+.++++.|.+.+
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence               68999999999        46888888887754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.85  E-value=5.3e-22  Score=144.49  Aligned_cols=160  Identities=19%  Similarity=0.194  Sum_probs=102.2

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcc------cccc----------------------eee------------
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATI----------------------GID------------   45 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~------~~~~----------------------~~~------------   45 (175)
                      ....++|+++|.+|+|||||+|+|++..+.+..      .++.                      +.+            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999999997753211      1210                      000            


Q ss_pred             ---------E--EEEEEEECCeEEEEEEEeCCCcc-------------cccccccccccCCcEEE-EEEECCChhhHHhH
Q 030524           46 ---------F--LSKTMYLEDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-VVYDVASRQSFLNT  100 (175)
Q Consensus        46 ---------~--~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~  100 (175)
                               .  ....+... ....+.+|||||..             .+...+..++.+++.+| +|+|+++..+....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                     0  00000011 12479999999963             34456677888888776 69999876443333


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh--cC-CeEEEeccCCCCCHHHHHHHHHHH
Q 030524          101 SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LN-VMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       101 ~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      ..++..+.   ..+.|+++|+||+|+.+.........+.....  .+ .+++++||++|.|+.++|+++.+.
T Consensus       182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          182 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            33433332   35789999999999875544333222211111  13 368899999999999999998764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.85  E-value=1.1e-22  Score=160.05  Aligned_cols=150  Identities=21%  Similarity=0.237  Sum_probs=83.6

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CcccccceeeEEEEEEEEC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLE   54 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (175)
                      ....++|+++|++++|||||+++|++...  .                             .+..+  +++.......+.
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~--GiTid~~~~~~~  251 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERAR--GVTMDVASTTFE  251 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcC--CeeEEeeEEEEE
Confidence            34568999999999999999999964210  0                             00111  222222222233


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hH--Hh-HHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 030524           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF--LN-TSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (175)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~--~~-~~~~~~~~~~~~~~~~~-~iiv~nk~D~~  127 (175)
                      .....+.||||||+++|...+...+..+|++|+|+|++++.   ++  .. ....+..+. .  .++| +++++||+|+.
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~-~--lgip~iIvviNKiDl~  328 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR-A--LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH-H--SSCCCEEEEEECGGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH-H--cCCCeEEEEEeccccc
Confidence            34467999999999999999999999999999999998643   22  11 222222222 2  3565 88999999986


Q ss_pred             CCCCCC----HHHHHHHH-HhcCC-----eEEEeccCCCCCHH
Q 030524          128 EKRQVS----IEEGEAKS-RELNV-----MFIETSAKAGFNIK  160 (175)
Q Consensus       128 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~  160 (175)
                      +.....    ..+...+. ...++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            522111    22334444 44454     79999999999998

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.84  E-value=3.6e-20  Score=132.59  Aligned_cols=124  Identities=13%  Similarity=0.157  Sum_probs=87.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-----   80 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-----   80 (175)
                      ...++|+++|++|+|||||+++|++.... ....+..+..........++  ..+.+|||||++++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            46799999999999999999999987642 22223333344444445555  47999999999887765554443     


Q ss_pred             ----CCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCCCCC
Q 030524           81 ----DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVS  133 (175)
Q Consensus        81 ----~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~~~iiv~nk~D~~~~~~~~  133 (175)
                          ++|++++|+++++.. +.. ...|+..+....+.+  .|+++++||+|+.+.....
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  170 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS  170 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence                789999999987654 433 346777776665533  4999999999986544444

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.84  E-value=8.3e-21  Score=131.41  Aligned_cols=158  Identities=16%  Similarity=0.215  Sum_probs=99.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI   75 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~   75 (175)
                      .....+|+++|++|+|||||++++++..+.....++.+.+........++   .+.+||+||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999998763333334444333333333333   478999999742          22223


Q ss_pred             cccc---cCCcEEEEEEECCChhhHHh--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHHhcC--C
Q 030524           76 PSYI---RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN--V  146 (175)
Q Consensus        76 ~~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~~~~~~~~~~~~~--~  146 (175)
                      ..++   ..++++++++|++++.+...  +..|+    ..  .++|+++++||+|+....  +.....+..++.+.+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA----VD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH----HH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3333   47899999999988655432  22222    12  468999999999975432  112345555666554  4


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          147 MFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       147 ~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      .++++|++++.++++++++|.+.+..
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            78999999999999999999887644

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.84  E-value=1.9e-20  Score=149.15  Aligned_cols=123  Identities=16%  Similarity=0.145  Sum_probs=82.6

Q ss_pred             CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-------------cccc---cceeeEEEEEEEECCeEEEEEEEe
Q 030524            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-------------TYQA---TIGIDFLSKTMYLEDRTVRLQLWD   64 (175)
Q Consensus         1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~i~D   64 (175)
                      |+........+|+++|+.|+|||||+++|++.....             ++.+   ..++++......+....+.+.+||
T Consensus         1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred             CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence            444445567899999999999999999998532210             0000   112233233333333346799999


Q ss_pred             CCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      |||+.+|...+..++..+|++++|+|+++....+. ..++..+..   .++|+++++||+|+.
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            99999999999999999999999999887644332 333333333   479999999999975

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.82  E-value=1.2e-19  Score=137.03  Aligned_cols=158  Identities=18%  Similarity=0.176  Sum_probs=107.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPSY---IRD   81 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~   81 (175)
                      -.|+|+|++|+|||||++++.+.... ..+..+ +.......+..++ ...+.+||+||..+.    ..+...+   +..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft-Tl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er  235 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR  235 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccc-eecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence            35899999999999999999886432 111111 1122222233333 246899999996432    2222222   457


Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      ++.++.++|++ +..+..+..+..++.....  ...|.++++||+|+...  .........+...+++++.+||++++|+
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL  312 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence            99999999997 5566677776666655432  35888999999998643  2334445555566889999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030524          160 KLCCHTLNSLITV  172 (175)
Q Consensus       160 ~~~f~~l~~~~~~  172 (175)
                      +++++++.+.+..
T Consensus       313 ~eL~~~i~~~l~~  325 (416)
T 1udx_A          313 PALKEALHALVRS  325 (416)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.82  E-value=2.3e-21  Score=141.24  Aligned_cols=161  Identities=15%  Similarity=0.205  Sum_probs=87.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC-CCCCccc--------ccceeeEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~   71 (175)
                      ..++|+++|++|+|||||++++.+. ..+....        ++............++....+.+||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4689999999999999999998875 3332221        12212222222233444568999999997       444


Q ss_pred             ccccc-------cccc-------------CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524           72 RSLIP-------SYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        72 ~~~~~-------~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                      .....       .++.             .+++++++.+.+. .+++....   .+......++++++|+||+|+...++
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence            44443       3332             2344555555322 12333331   22222234689999999999865433


Q ss_pred             C--CHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          132 V--SIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       132 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      .  ...++.+++..++++++++||+++ +++++|.++.+.+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            2  245677888999999999999999 9999999999887654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.81  E-value=1.7e-19  Score=140.11  Aligned_cols=117  Identities=21%  Similarity=0.208  Sum_probs=77.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCc--------------------ccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (175)
                      +.++|+++|++|+|||||+++|+.......                    .....+.+.......+....+.+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            568999999999999999999986321000                    001111121111122222336799999999


Q ss_pred             cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      +.+|...+..++..+|++|+|+|++++...+ ...++..+   ...++|+++++||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            9999988888999999999999998764322 12222222   225799999999999854

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.81  E-value=2.2e-19  Score=134.64  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=98.6

Q ss_pred             EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHhHHHHHHHHHHhc-CCCCcE
Q 030524           49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVII  117 (175)
Q Consensus        49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~  117 (175)
                      ..+.+++  +.+.+||++|++.++..|..|+.+++++|||||+++          ..+|++...|+..+.... ..++|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            3444554  789999999999999999999999999999999999          889999999999988763 368999


Q ss_pred             EEEEeCCCCCCCCC---C---------------------------CHHHHHHHH-----Hh--------cCCeEEEeccC
Q 030524          118 VLVGNKTDLVEKRQ---V---------------------------SIEEGEAKS-----RE--------LNVMFIETSAK  154 (175)
Q Consensus       118 iiv~nk~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~  154 (175)
                      ++++||+|+.+++.   .                           ...++..++     ..        .++.++++||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999854321   1                           134455543     22        24678899999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 030524          155 AGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       155 ~~~~v~~~f~~l~~~~~~  172 (175)
                      ++.||+++|.++.+.+..
T Consensus       368 d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHH
Confidence            999999999998887754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.81  E-value=1.9e-20  Score=139.75  Aligned_cols=154  Identities=20%  Similarity=0.235  Sum_probs=103.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceee---E---------------------------------------
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID---F---------------------------------------   46 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~---------------------------------------   46 (175)
                      -.+|+++|++|||||||+++|++..+.+......+..   .                                       
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            3499999999999999999999976532222111100   0                                       


Q ss_pred             ------------EEEEEEECCeEEEEEEEeCCCcccc-------------cccccccccCCcEEEEEEECCChhhHHhHH
Q 030524           47 ------------LSKTMYLEDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDVASRQSFLNTS  101 (175)
Q Consensus        47 ------------~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~  101 (175)
                                  ....+... ....+.+|||||...+             ..+...++.++|++|+++|.++.+...  .
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             hcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                        00001111 1235899999997765             456778899999999999876543221  3


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524          102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus       102 ~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      .|+..+......+.|+++|+||+|+.+......+..+.+...++.+|+.++++++.++.+.+..
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            3344444444457899999999999766555555555556667789999999999888776554

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.81  E-value=3.3e-19  Score=142.60  Aligned_cols=161  Identities=14%  Similarity=0.205  Sum_probs=106.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccce-eeEE--------------------------------------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIG-IDFL--------------------------------------   47 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~--------------------------------------   47 (175)
                      ..++|+++|.+|+|||||+|+|++....+ ...++.. ....                                      
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            46899999999999999999999876432 2233221 0000                                      


Q ss_pred             --------------EEEEEECCeE--EEEEEEeCCCccc---ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHH
Q 030524           48 --------------SKTMYLEDRT--VRLQLWDTAGQER---FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR  108 (175)
Q Consensus        48 --------------~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  108 (175)
                                    ...+..+...  ..+.+|||||...   ....+..+++++|++|+|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                          0001111100  2589999999654   34566778899999999999998877766655543332


Q ss_pred             HhcCCCCcEEEEEeCCCCCCCCCCCHH---H-------HH-----HHHHh--------cCCeEEEeccC-----------
Q 030524          109 TERGSDVIIVLVGNKTDLVEKRQVSIE---E-------GE-----AKSRE--------LNVMFIETSAK-----------  154 (175)
Q Consensus       109 ~~~~~~~~~iiv~nk~D~~~~~~~~~~---~-------~~-----~~~~~--------~~~~~~~~s~~-----------  154 (175)
                      .   .+.|+++|+||+|+......+.+   +       ..     .+...        ...+++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   36789999999998654311110   1       11     11111        12479999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHh
Q 030524          155 ---AGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       155 ---~~~~v~~~f~~l~~~~~  171 (175)
                         ++.|+.+++..+.+.+.
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHH
Confidence               99999999999887664

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.81  E-value=1.6e-19  Score=129.72  Aligned_cols=124  Identities=12%  Similarity=0.116  Sum_probs=82.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccc-------cc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------SY   78 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~   78 (175)
                      ...++|+++|.+|+|||||+|+|++..... ...+..+..........+  ...+.+|||||+.++.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            357999999999999999999999876431 212222222222333333  35799999999876654322       11


Q ss_pred             --ccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCCCCC
Q 030524           79 --IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVS  133 (175)
Q Consensus        79 --~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~~~iiv~nk~D~~~~~~~~  133 (175)
                        ...+|++++|+|++.. ++.. ...|+..+....+.+  .|+++|+||+|+.+.....
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~  173 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  173 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence              2478999999998653 3433 346777776655433  7999999999986554433

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.81  E-value=1.9e-20  Score=136.48  Aligned_cols=135  Identities=19%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             HHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh-hHHhHH
Q 030524           24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTS  101 (175)
Q Consensus        24 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~  101 (175)
                      +|+.+++.+.+. ..+.+|.+ +.+......++   .+.+||+  ++++..+++.++.++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            677788888877 78889988 44444332222   6899999  8999999999999999999999999997 788899


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEeccCCCCCHHHHHHHHHHH
Q 030524          102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       102 ~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      .|+..+..   .++|+++|+||+|+.+.+.+  ++.++++..++  ++++++||++|.|++++|..+...
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence            99887654   47999999999998654332  44667777777  899999999999999999887543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.80  E-value=2.2e-19  Score=143.52  Aligned_cols=116  Identities=20%  Similarity=0.255  Sum_probs=82.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC--C------CC-----c-----ccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--F------DN-----T-----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      .+..+|+++|++|+|||||+++|+...  .      ..     +     .....++......+..+  .+.+.+|||||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcCc
Confidence            456899999999999999999998421  1      00     0     01111112222222333  367999999999


Q ss_pred             ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      .+|...+..++..+|++|+|+|++++.+.+....|.. +..   .++|+++++||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999999999999999999999998877776665543 222   3799999999999854

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.80  E-value=3.3e-19  Score=130.67  Aligned_cols=111  Identities=20%  Similarity=0.213  Sum_probs=69.4

Q ss_pred             EEEEEEeCCCccc-------------ccccccccccCCcEEEEEEECCChhhH-HhHHHHHHHHHHhcCCCCcEEEEEeC
Q 030524           58 VRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNK  123 (175)
Q Consensus        58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~nk  123 (175)
                      ..+.+|||||...             +...+..++.++|++++|+|.++.... .....+...+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4689999999643             445567788999999999997543211 1111222222   2257899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC------CCCHHHHHHHHHHHHh
Q 030524          124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKA------GFNIKLCCHTLNSLIT  171 (175)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~v~~~f~~l~~~~~  171 (175)
                      +|+.+......+..+......+..++++++.+      +.|+.+++..+.+.+.
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            99875544223322211112235666666554      6889999988776654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=136.97  Aligned_cols=159  Identities=13%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCC-Ccc-------cccceeeEEEEEEEECCeEEEEEEEeCCCcccccc------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------   73 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------   73 (175)
                      ..++|+++|++|+|||||+++|++.... ...       .++.............+....+.+||++|...+..      
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            3588999999999999999999987652 211       11222222222222233345789999999765311      


Q ss_pred             -------------------cccccccCCcEEEEEEECCCh-hhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           74 -------------------LIPSYIRDSSVAVVVYDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        74 -------------------~~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                                         +.+.++.++++.+++|..... .++.... .|+..+.    .++|+++|+||+|+...+++
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence                               123345555554444444332 2444443 4555543    37999999999998655444


Q ss_pred             CH--HHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          133 SI--EEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ..  ..+...+..++++++++|+.++.++.++|..+.+.+
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            43  567778888899999999999999999988877654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.78  E-value=7e-18  Score=135.13  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=82.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCC--CCC-----------cccc---cceeeEE--EEEEEE-----CCeEEEEEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----------TYQA---TIGIDFL--SKTMYL-----EDRTVRLQLW   63 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~-----------~~~~---~~~~~~~--~~~~~~-----~~~~~~~~i~   63 (175)
                      .+..+|+++|+.|+|||||+++|+...  ...           ++.+   ..+++..  ......     ++..+.+.+|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            456899999999999999999997531  110           0000   1112221  122222     2334789999


Q ss_pred             eCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      ||||+.+|...+..++..+|++|+|+|+++....+....|. ...   ..++|+++++||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QAN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHH---HcCCCEEEEEeCCCccc
Confidence            99999999999999999999999999999876555444442 222   24799999999999853

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=2.2e-18  Score=137.81  Aligned_cols=118  Identities=23%  Similarity=0.271  Sum_probs=83.3

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcC--CCC------C-----cc-----cccceeeEEEEEEEECCeEEEEEEEeCC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFD------N-----TY-----QATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~--~~~------~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (175)
                      +..+..+|+++|++|+|||||+++|+..  ...      .     ++     .+..++......+..++  ..+.+||||
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP   83 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP   83 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence            3456789999999999999999999852  111      0     00     01111111122233333  579999999


Q ss_pred             CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      |+.+|...+..++..+|++|+|+|++++.+.+....|.. +..   .++|+++++||+|+..
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            999999999999999999999999998877666555543 332   3789999999999854

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=6.8e-19  Score=132.45  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=47.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceee--EEEEEE-------------------EECC-eEEEEEEEeCCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID--FLSKTM-------------------YLED-RTVRLQLWDTAG   67 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~-------------------~~~~-~~~~~~i~D~~G   67 (175)
                      ++|+++|.||+|||||+|+|++........+..+.+  ......                   .+++ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999876322222211111  111111                   1233 246799999999


Q ss_pred             ccc----cccccc---ccccCCcEEEEEEECCCh
Q 030524           68 QER----FRSLIP---SYIRDSSVAVVVYDVASR   94 (175)
Q Consensus        68 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   94 (175)
                      ...    ...+..   .+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222222   456899999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.73  E-value=8.6e-18  Score=117.16  Aligned_cols=154  Identities=18%  Similarity=0.165  Sum_probs=95.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeE--------------EEEEEEE----------------CCeE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDF--------------LSKTMYL----------------EDRT   57 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~   57 (175)
                      ...+|+++|.+|+|||||+++|+..............+.              ....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            357899999999999999999986521111011100000              0011111                0122


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~  137 (175)
                      ..+.+|||+|+....   ..+-...+.+++|+|+++...  ....+...      .+.|.++++||+|+.+.......+.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence            468899999851111   111135788999999876532  11111111      1478899999999865434456666


Q ss_pred             HHHHHhc--CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          138 EAKSREL--NVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       138 ~~~~~~~--~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ...+...  +++++++|+++|.|+.++|++|.+.+..
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            6666654  4689999999999999999999887643

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.72  E-value=1.3e-18  Score=129.40  Aligned_cols=159  Identities=18%  Similarity=0.183  Sum_probs=93.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcc------cccce-------------------------------------
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIG-------------------------------------   43 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~------~~~~~-------------------------------------   43 (175)
                      ....+|+++|.+|+|||||+|+|++..+.+..      .++..                                     
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34579999999999999999999997653211      12100                                     


Q ss_pred             ------eeEEEEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCCcEEEE-EEECCChhhHHhHHH
Q 030524           44 ------IDFLSKTMYLE-DRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVV-VYDVASRQSFLNTSK  102 (175)
Q Consensus        44 ------~~~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~~~~~~~~  102 (175)
                            +......+.+. .....+.+|||||..             .+..++..|+.+.+.+|+ +.+++..  +... .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence                  00000001110 112469999999953             344566677766655544 5665542  2221 1


Q ss_pred             HHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH--HHhcCC-eEEEeccCCCCCHHHHHHHHHH
Q 030524          103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK--SRELNV-MFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus       103 ~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~--~~~~~~-~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      +...+......+.|+++|+||+|+.+.........+..  ....++ +++.+||+++.|+.++|+.+.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            22222223335799999999999875433222221110  111232 6788999999999999998876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.71  E-value=1.9e-19  Score=125.93  Aligned_cols=154  Identities=17%  Similarity=0.208  Sum_probs=92.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEE------------EEEEEEC-Ce------------------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DR------------------   56 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   56 (175)
                      ...+|+++|++|||||||+++|+.......+.++...++.            .....++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999976544333333333322            1111111 11                  


Q ss_pred             -EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 030524           57 -TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (175)
Q Consensus        57 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~  135 (175)
                       ...+.+.|++|.-...   ..+-...+..+.+.|..+......  .. ...     ...|.++++||+|+.+.......
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~-----~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI-----MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH-----hhcCCEEEEeccccCchhHHHHH
Confidence             1135555665521000   011112344556666432211110  00 011     13677999999998655445667


Q ss_pred             HHHHHHHhc--CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          136 EGEAKSREL--NVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       136 ~~~~~~~~~--~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +...++...  +++++++||++|.|+.++|+++.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            777777654  5799999999999999999999887653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.69  E-value=7.7e-18  Score=125.38  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=68.6

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH--H
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--E  135 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~--~  135 (175)
                      +.+.+|||||...   .....+..+|++++|+|....+.++.+...   +     .+.|+++|+||+|+.+......  .
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence            5789999999432   223345889999999998766544333211   1     2468899999999854322111  1


Q ss_pred             HHHHHHH-------hcCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          136 EGEAKSR-------ELNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       136 ~~~~~~~-------~~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +......       .++.+++++||++|+|++++++++.+.+.
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            1111111       12578999999999999999999988764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.69  E-value=7.3e-16  Score=120.32  Aligned_cols=114  Identities=17%  Similarity=0.144  Sum_probs=80.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC------------------C----CcccccceeeEEEEEEEECCeEEEEEEEeC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF------------------D----NTYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (175)
                      +..+|+|+|+.++|||||.++|+...-                  .    .+.....++......+..++  +.+.++||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            468999999999999999999973210                  0    11111122222223333344  67999999


Q ss_pred             CCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      |||.+|.......+.-+|++|+|+|+..+-.-+....|.. ...   .++|.++++||+|..
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDRE  165 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccch
Confidence            9999999999999999999999999987755555555533 322   479999999999974

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.69  E-value=6.1e-17  Score=131.95  Aligned_cols=117  Identities=17%  Similarity=0.174  Sum_probs=85.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC------------CC----cccc--cceeeEEEEEEE------------ECCe
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF------------DN----TYQA--TIGIDFLSKTMY------------LEDR   56 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~------------~~----~~~~--~~~~~~~~~~~~------------~~~~   56 (175)
                      .+..+|+++|++|+|||||+++|+...-            ..    ++..  |.........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            3568999999999999999999986411            00    0111  111111122222            2445


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      .+.+.+|||||+.+|...+..++..+|++|+|+|++++.+++....|.....    .++|+++++||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            7889999999999999999999999999999999999888877665644332    478999999999975

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=9.4e-16  Score=113.59  Aligned_cols=146  Identities=12%  Similarity=0.074  Sum_probs=88.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR-   72 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-   72 (175)
                      .++|+++|.||+|||||+|+|++........+..+.+.....+.+++.               ...+.+||+||..++. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            378999999999999999999987643222221111111112233332               1469999999987643 


Q ss_pred             ---cccc---ccccCCcEEEEEEECCCh----------hhHHhHHHHHHHH-----------------------------
Q 030524           73 ---SLIP---SYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV-----------------------------  107 (175)
Q Consensus        73 ---~~~~---~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~-----------------------------  107 (175)
                         .+..   .+++++|++++|+|+++.          +.++.+..+..++                             
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence               2222   347899999999999852          2232222111111                             


Q ss_pred             -----------HH-------------------h-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccC
Q 030524          108 -----------RT-------------------E-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK  154 (175)
Q Consensus       108 -----------~~-------------------~-~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (175)
                                 ..                   . ....+|+++++|+.|..-.........+.++...+++++.+||+
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                       00                   0 01248999999999853212233566777788889999999965

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.67  E-value=5.5e-17  Score=126.73  Aligned_cols=120  Identities=21%  Similarity=0.222  Sum_probs=79.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCC---CcccccceeeEEEE----------------------------------
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSK----------------------------------   49 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~----------------------------------   49 (175)
                      ....+|+++|.+|+|||||+|+|++..+.   ....++........                                  
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            35689999999999999999999998753   22222221100000                                  


Q ss_pred             --EEEECCe-EEEEEEEeCCCccc-----------ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCC
Q 030524           50 --TMYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV  115 (175)
Q Consensus        50 --~~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  115 (175)
                        ....++. ...+.+|||||...           +...+..++..+|++|+|+|+++....+....++..+..   .+.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence              0000000 02589999999764           445566778899999999999875444555566555432   468


Q ss_pred             cEEEEEeCCCCCCC
Q 030524          116 IIVLVGNKTDLVEK  129 (175)
Q Consensus       116 ~~iiv~nk~D~~~~  129 (175)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            99999999998643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.62  E-value=1.5e-15  Score=113.00  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=92.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-Ccccc-cceeeEEEEEEEECC-------------------eEEEEEEEeCCCc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQA-TIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQ   68 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~   68 (175)
                      ++|+++|.||+|||||++++.+.... .++.. |...+..  ...+++                   ....+.+||+||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            68999999999999999999876422 12211 1111111  112211                   2346999999998


Q ss_pred             ccccc----c---ccccccCCcEEEEEEECCCh----------hhHHhHHHHHHHH------------------------
Q 030524           69 ERFRS----L---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV------------------------  107 (175)
Q Consensus        69 ~~~~~----~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~------------------------  107 (175)
                      .+..+    +   ....++++|++++|+|+++.          +.++.+..+..++                        
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~  159 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE  159 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence            65432    2   22347899999999999851          1222111100000                        


Q ss_pred             -----------HHh----------------------c--CCCCcEEEEEeCCCC--CCC-CCCCHHHHHHHHHhcCCeEE
Q 030524          108 -----------RTE----------------------R--GSDVIIVLVGNKTDL--VEK-RQVSIEEGEAKSRELNVMFI  149 (175)
Q Consensus       108 -----------~~~----------------------~--~~~~~~iiv~nk~D~--~~~-~~~~~~~~~~~~~~~~~~~~  149 (175)
                                 ...                      .  -...|+++++||.|.  .+. ........+.+++..+++++
T Consensus       160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv  239 (368)
T 2dby_A          160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV  239 (368)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence                       000                      0  023799999999973  221 12345667778888899999


Q ss_pred             EeccCCCCCHHHHHHH
Q 030524          150 ETSAKAGFNIKLCCHT  165 (175)
Q Consensus       150 ~~s~~~~~~v~~~f~~  165 (175)
                      ++||+...++.+++..
T Consensus       240 ~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          240 VVSARLEAELAELSGE  255 (368)
T ss_dssp             EECHHHHHHHHTSCHH
T ss_pred             EeechhHHHHHHhchH
Confidence            9999886665555443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.61  E-value=2.3e-15  Score=111.71  Aligned_cols=101  Identities=12%  Similarity=0.046  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~  137 (175)
                      +.+.++||+|...   ........+|.+++|+|++++...+.+..   .+     ...|.++++||+|+.+..... ...
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ  234 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence            4689999999531   12344678999999999987643322211   11     246778899999985321100 011


Q ss_pred             HHHHH----------hcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          138 EAKSR----------ELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       138 ~~~~~----------~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ..+..          .++.+++.+|+++|+|+++++++|.+.+
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            11211          1245789999999999999999998765

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.59  E-value=7.6e-15  Score=104.72  Aligned_cols=110  Identities=15%  Similarity=0.025  Sum_probs=68.2

Q ss_pred             EEEEEEeCCCccccccccc------ccccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      +.+.+|||||..+......      ..+.. +++++++|....   ..+.....+.....  ...+.|+++++||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence            4799999999866543221      23456 888889887533   22222221111111  113689999999999854


Q ss_pred             CCCCCHHHHHH----------------------------HHHhcC--CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          129 KRQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       129 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ..+.  .+...                            ++..++  ++++++|+++|+|++++|+++.+.+..
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            3211  11111                            123333  489999999999999999999887643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5e-14  Score=104.91  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=96.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-------cccccccC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRD   81 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~   81 (175)
                      ..+|+++|.||+|||||+|+|.+........+..+.+.....+..++  .++.+.|+||.-+-.+       ..-..+++
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            46899999999999999999999765544445555566666666676  4589999999532111       11234578


Q ss_pred             CcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC--------CCCCCCHHHHHHHHHhcCCeEEEec
Q 030524           82 SSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV--------EKRQVSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus        82 ~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~--------~~~~~~~~~~~~~~~~~~~~~~~~s  152 (175)
                      +|++++|+|+++|. .++.+...+....... ...|.+++.||.|..        .....+.++.+.....+.+..-++-
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~  228 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA  228 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence            99999999999873 2333444433322221 456777888999963        1234556666666666655222222


Q ss_pred             cCCCCCHHHHHH
Q 030524          153 AKAGFNIKLCCH  164 (175)
Q Consensus       153 ~~~~~~v~~~f~  164 (175)
                      ...+...+++.+
T Consensus       229 ~~~nv~eddl~d  240 (376)
T 4a9a_A          229 FRCDATVDDLID  240 (376)
T ss_dssp             ECSCCCHHHHHH
T ss_pred             ecccCCHHHHHH
Confidence            233444555443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.58  E-value=6.8e-16  Score=114.30  Aligned_cols=103  Identities=17%  Similarity=0.106  Sum_probs=63.9

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH--H
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--E  135 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~--~  135 (175)
                      +.+.++||||.......   ....+|++++|+|.+.+..++.+..   ..     .+.|.++|+||+|+.+......  .
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            57999999996543322   3578999999999876543322211   11     1367789999999854211110  1


Q ss_pred             HHHHHHHhc-------CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          136 EGEAKSREL-------NVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +.+......       ..+++++||++|+|+++++++|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            122111111       457899999999999999999987653

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.57  E-value=5e-16  Score=123.33  Aligned_cols=114  Identities=15%  Similarity=0.215  Sum_probs=80.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC--------CCC-----cc---cccceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK--------FDN-----TY---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~--------~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   73 (175)
                      .||+++|+.++|||||.++|+...        ...     ++   ....+++.......+.-..+.+.++|||||.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            589999999999999999997421        000     00   01123333333333444446799999999999999


Q ss_pred             cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      .....+.-+|++|+|+|+..+-.-+....|. ....   .++|.++++||+|..
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~---~~lp~i~~INKmDr~  132 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRK---MGIPTIFFINKIDQN  132 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHH---HTCSCEECCEECCSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCeEEEEeccccc
Confidence            9999999999999999998764433333333 3333   268889999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.57  E-value=8.9e-15  Score=106.56  Aligned_cols=111  Identities=20%  Similarity=0.138  Sum_probs=86.9

Q ss_pred             CeEEEEEEEe-CCC-----cccccccccccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           55 DRTVRLQLWD-TAG-----QERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        55 ~~~~~~~i~D-~~G-----~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      |+.+.+..+| +.|     ++++..+.+.++.++|++++|+|++++. ++..+.+|+..+..   .++|+++|+||+|+.
T Consensus        47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~  123 (302)
T 2yv5_A           47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL  123 (302)
T ss_dssp             TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC
T ss_pred             ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC
Confidence            3445555555 323     6788888899999999999999999986 88888999886654   479999999999986


Q ss_pred             CCCCCC-HHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524          128 EKRQVS-IEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus       128 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ++.++. ..+...++...+++++++||++|.|++++|..+..
T Consensus       124 ~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          124 NEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred             CccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence            543212 34455666677899999999999999999987654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.57  E-value=5.5e-14  Score=113.01  Aligned_cols=116  Identities=21%  Similarity=0.228  Sum_probs=78.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCC--------CCCc--------ccccceeeEEE--EEEEEC-----CeEEEEEEEe
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDK--------FDNT--------YQATIGIDFLS--KTMYLE-----DRTVRLQLWD   64 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~--------~~~~--------~~~~~~~~~~~--~~~~~~-----~~~~~~~i~D   64 (175)
                      +-.+|+|+|+.++|||||.++|+...        ....        .....+++...  ......     ...+.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            44789999999999999999987421        1100        01112222222  222222     2357899999


Q ss_pred             CCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      ||||.+|.......+.-+|++|+|+|+..+-..+....|.....    .++|.++++||+|..
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence            99999999999999999999999999987654444444444333    369999999999964

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.53  E-value=1.9e-14  Score=115.26  Aligned_cols=158  Identities=19%  Similarity=0.187  Sum_probs=95.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccce-------------------------------------------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIG-------------------------------------------   43 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-------------------------------------------   43 (175)
                      ...+|+++|.+++|||||+|+|++..+.+ ....+..                                           
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            45799999999999999999999976521 1111100                                           


Q ss_pred             -----e--eEEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-cCCcEEEEEEECCChhhHHhHHH
Q 030524           44 -----I--DFLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVVVYDVASRQSFLNTSK  102 (175)
Q Consensus        44 -----~--~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~  102 (175)
                           +  +.....+...+ ...+.++||||-..             ....+..|+ ..+|++++|+|+++...-+....
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                 0  00011111111 12478999999432             222344444 47899999999986532222222


Q ss_pred             HHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH--hcC-CeEEEeccCCCCCHHHHHHHHHHH
Q 030524          103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR--ELN-VMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       103 ~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      .+..+.   ..+.|+++|+||+|+................  ..+ .+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            223232   3478999999999987554433221110000  123 267889999999999999988763

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.50  E-value=2.4e-14  Score=97.47  Aligned_cols=104  Identities=6%  Similarity=-0.071  Sum_probs=71.8

Q ss_pred             CCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHH---HHhc--CCCCcEEEEEeCC-CCCCCCCCCHHHHHH
Q 030524           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV---RTER--GSDVIIVLVGNKT-DLVEKRQVSIEEGEA  139 (175)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~---~~~~--~~~~~~iiv~nk~-D~~~~~~~~~~~~~~  139 (175)
                      +|++.++..|++|+.++|++|||+|.+|++.++ .+..+.++   ....  ..++|++|++||. |+.  ...+..+..+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence            478999999999999999999999999987654 45444333   3222  1579999999985 663  3445555444


Q ss_pred             HHH----hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          140 KSR----ELNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       140 ~~~----~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ...    ...+.+..|||.+|+|+.+.++||.+.+..
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            322    235689999999999999999999877654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.48  E-value=7e-14  Score=103.27  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=61.5

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~  137 (175)
                      ..+.++||+|...-.   ......+|.+++++|...++..+.+....   .     ..+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence            568999999954221   12346899999999986543322111111   1     234567779999643221111112


Q ss_pred             HHHHHh----------cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          138 EAKSRE----------LNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       138 ~~~~~~----------~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      +.+...          +..+++.+|++++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222211          1457899999999999999999887653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.42  E-value=1.5e-13  Score=102.78  Aligned_cols=88  Identities=16%  Similarity=0.100  Sum_probs=51.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR   72 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~   72 (175)
                      ..++|+++|.+|+|||||+|+|.+........+..+.+.....+.+++.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4589999999999999999999987654333343443433444444432               2358999999977644


Q ss_pred             c-------cccccccCCcEEEEEEECCChh
Q 030524           73 S-------LIPSYIRDSSVAVVVYDVASRQ   95 (175)
Q Consensus        73 ~-------~~~~~~~~~d~~i~v~d~~~~~   95 (175)
                      +       .+..+++++|++++|+|+++.+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       3456678999999999998543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.38  E-value=3.2e-13  Score=96.28  Aligned_cols=105  Identities=6%  Similarity=-0.086  Sum_probs=76.4

Q ss_pred             CCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHH---HHHHhc--CCCCcEEEEEeC-CCCCCCCCCCHHHHH
Q 030524           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID---EVRTER--GSDVIIVLVGNK-TDLVEKRQVSIEEGE  138 (175)
Q Consensus        65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~--~~~~~~iiv~nk-~D~~~~~~~~~~~~~  138 (175)
                      .+|++..+..|++|+.++|++|||+|.+|++.++ .+..+.   .+....  ..+.|++|++|| .|+..  ..+..+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            4678999999999999999999999999998754 444333   233221  268999999996 68743  44444544


Q ss_pred             HHHH----hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          139 AKSR----ELNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       139 ~~~~----~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      +...    ...+.+..|||.+|+|+.+.++||.+.+..
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            4322    235679999999999999999999987654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.36  E-value=2.9e-11  Score=90.61  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=58.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF   71 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   71 (175)
                      ...+++++|++|+|||||+|+|++... .....+..+.+.....+.+++.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            457999999999999999999999765 3333443344444444445441               135899999995332


Q ss_pred             -------cccccccccCCcEEEEEEECCC
Q 030524           72 -------RSLIPSYIRDSSVAVVVYDVAS   93 (175)
Q Consensus        72 -------~~~~~~~~~~~d~~i~v~d~~~   93 (175)
                             ...+...+.++|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   2233445678999999999863

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.09  E-value=2.3e-10  Score=86.39  Aligned_cols=139  Identities=14%  Similarity=0.181  Sum_probs=69.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcc----cccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------------
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------------   72 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------------   72 (175)
                      ++++|+|++|+|||||++.+++..+....    .+..............+-...+.++|++|.....             
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            56999999999999999999886533211    1111112112222222223468899999854210             


Q ss_pred             -ccc----ccc---------ccCC--cE-EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--
Q 030524           73 -SLI----PSY---------IRDS--SV-AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--  133 (175)
Q Consensus        73 -~~~----~~~---------~~~~--d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--  133 (175)
                       ..+    ..+         ...+  |+ +.|+.|...+-+  ...   .++......++|+|++.||+|.....+..  
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHH
Confidence             011    111         1122  34 555666554322  221   12223333679999999999975432211  


Q ss_pred             HHHHHHHHHhcCCeEEEecc
Q 030524          134 IEEGEAKSRELNVMFIETSA  153 (175)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~  153 (175)
                      ...........|++++.+|.
T Consensus       198 ~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHcCCcEEecCC
Confidence            11222223445777777774

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.07  E-value=2.4e-10  Score=85.36  Aligned_cols=96  Identities=19%  Similarity=0.320  Sum_probs=72.8

Q ss_pred             CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHH
Q 030524           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA----KSR  142 (175)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~----~~~  142 (175)
                      ..+.|...++.+.+.+|++++|+|++++.     ..|...+.... .+.|+++|+||+|+.+.. ......++    .++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45788999999999999999999999863     34444555444 378999999999986433 33333333    356


Q ss_pred             hcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 030524          143 ELNV---MFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus       143 ~~~~---~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      ..++   .++.+||++|.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6777   79999999999999999998764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.03  E-value=1e-10  Score=90.29  Aligned_cols=151  Identities=19%  Similarity=0.179  Sum_probs=83.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHh------cCCCC----Cccccc-----------ceeeEEEEEEE-------------E
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFM------YDKFD----NTYQAT-----------IGIDFLSKTMY-------------L   53 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~   53 (175)
                      .+..|+++|++|+||||+++.|.      +....    +.+.+.           .+++.+.....             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998      32210    001110           01222211000             0


Q ss_pred             CCeEEEEEEEeCCCcccccc-ccc---cc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcE-EEEEeCCCC
Q 030524           54 EDRTVRLQLWDTAGQERFRS-LIP---SY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDL  126 (175)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nk~D~  126 (175)
                      ....+.+.|+||||...... .+.   ..  +..+|.+++|+|+.......   .....+..    .+|+ ++|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence            00235689999999643211 111   11  23789999999998653211   11222222    1554 778899997


Q ss_pred             CCCCCCCHHHHHHHHHhcCCeE------------------EEeccCCCCC-HHHHHHHHHHH
Q 030524          127 VEKRQVSIEEGEAKSRELNVMF------------------IETSAKAGFN-IKLCCHTLNSL  169 (175)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~~f~~l~~~  169 (175)
                      ....  .  .........++|+                  ..+|+..|.| +.++++++.+.
T Consensus       253 ~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            5321  1  1222333444443                  3468888888 88888887654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.02  E-value=2.1e-11  Score=91.12  Aligned_cols=138  Identities=15%  Similarity=0.165  Sum_probs=77.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC------CCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------c
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------L   74 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~   74 (175)
                      ..+|+++|.+|+|||||+|+|++.      .......+..+  ........+.   .+.++||||-.....        .
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLES---GATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999975      22122222222  2222333333   279999999532211        1


Q ss_pred             ccccc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEec
Q 030524           75 IPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus        75 ~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (175)
                      ...++  +..+.++++++....-.+..+..    +......+.|+++++||.|..+.... ....+.+.++.+..+...+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSC
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCC
Confidence            11222  56799999998742211111111    11112357899999999997643332 2334445556666544444


Q ss_pred             cCCC
Q 030524          153 AKAG  156 (175)
Q Consensus       153 ~~~~  156 (175)
                      +...
T Consensus       312 ~~~~  315 (369)
T 3ec1_A          312 KRYA  315 (369)
T ss_dssp             GGGT
T ss_pred             chhh
Confidence            4433

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.93  E-value=5.1e-11  Score=88.93  Aligned_cols=131  Identities=14%  Similarity=0.146  Sum_probs=70.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCC-----cccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------c
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------I   75 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~   75 (175)
                      ..+|+++|.+|+|||||+|+|++.....     ......+.+........+..   +.++||||-......        .
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            3689999999999999999998853111     01111122222223333332   789999995332211        1


Q ss_pred             ccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe
Q 030524           76 PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (175)
Q Consensus        76 ~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~  147 (175)
                      ..+  .+..+.++++++......+..+..    +......+.|+++++||.|..+... .....+.+.++.+..
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~  305 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDL  305 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTT
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCc
Confidence            111  256788888887632110111111    1111235789999999999764332 233334445555554

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.92  E-value=1.3e-09  Score=78.54  Aligned_cols=100  Identities=9%  Similarity=0.081  Sum_probs=68.9

Q ss_pred             EEeCCCcc-cccccccccccCCcEEEEEEECCChhhHHh--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 030524           62 LWDTAGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE  138 (175)
Q Consensus        62 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~  138 (175)
                      +-..|||. +....+...+.++|+++.|+|+.++.+...  +.+++        .++|.++++||+|+.+...  .....
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            44578875 444566677899999999999999876653  33332        4789999999999865211  12223


Q ss_pred             HHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          139 AKSRELNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       139 ~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      .+....+++++.+|+.++.|+.+++..+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            334455789999999999999999998877654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.92  E-value=5.3e-09  Score=74.89  Aligned_cols=137  Identities=12%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcc-------cccceeeEEEEEEEEC--CeEEEEEEEeCCCcccccc------
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------QATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRS------   73 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~------   73 (175)
                      .++++++|+.|+|||||++.+++...+...       ................  +-...+.++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            478999999999999999999874322110       0000000011111111  2123678999998432110      


Q ss_pred             cc----------------------cccccCCcEEEEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524           74 LI----------------------PSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (175)
Q Consensus        74 ~~----------------------~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~  130 (175)
                      ..                      +-.+..+++.++++|-... ++..+ ...+..+.   .. ++++++++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~---~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLS---KV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence            00                      0112346888999885411 12222 22222222   23 8999999999975432


Q ss_pred             CC--CHHHHHHHHHhcCCeEEE
Q 030524          131 QV--SIEEGEAKSRELNVMFIE  150 (175)
Q Consensus       131 ~~--~~~~~~~~~~~~~~~~~~  150 (175)
                      +.  ...........+++.+++
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            21  122233344556666554

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.92  E-value=6.3e-10  Score=83.09  Aligned_cols=97  Identities=22%  Similarity=0.272  Sum_probs=71.6

Q ss_pred             CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHH
Q 030524           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA----KSR  142 (175)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~----~~~  142 (175)
                      .++.|...+++++..++++++|+|++++.+     .|...+.... .+.|+++|+||+|+.+.. ......++    .++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            478899999999999999999999998763     2333344333 378999999999986532 23333333    355


Q ss_pred             hcCC---eEEEeccCCCCCHHHHHHHHHHHH
Q 030524          143 ELNV---MFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       143 ~~~~---~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ..++   .++.+||++|.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            6676   789999999999999999987643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.88  E-value=3.2e-08  Score=74.72  Aligned_cols=156  Identities=13%  Similarity=0.097  Sum_probs=81.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcc-cccceeeE--EEEEEEECCeEEEEEEEeCCCccccccccccc-----cc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR   80 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~   80 (175)
                      ...++++|++|+|||||+|.+.+...+... ....+.+.  ........ ..-.+.++|++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            357999999999999999999985332211 11111110  01111111 11147899999854221111111     23


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC-------CCCCCCHHHH----HHHH----HhcC
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-------EKRQVSIEEG----EAKS----RELN  145 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~-------~~~~~~~~~~----~~~~----~~~~  145 (175)
                      ..+..++ ++.....   ..+..+-.....  .+.|++++.||.|+.       .-......+.    +++.    .+.+
T Consensus       148 ~~~~~~~-lS~G~~~---kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFK---KNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCC---HHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCcc---HHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455554 7765211   111111111122  368999999999863       1112222332    2232    1222


Q ss_pred             ---CeEEEecc--CCCCCHHHHHHHHHHHHh
Q 030524          146 ---VMFIETSA--KAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       146 ---~~~~~~s~--~~~~~v~~~f~~l~~~~~  171 (175)
                         ...+.+|+  ..+.|++++.+.+.+.+-
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence               36788899  556679999998876653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.68  E-value=2e-08  Score=72.32  Aligned_cols=57  Identities=21%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      ...++|+++|.||+|||||+|+|.+.... ....+..+.+.  ..+..+.   .+.++||||.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCc
Confidence            35689999999999999999999986532 22222222121  1222332   4789999995

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.65  E-value=1e-08  Score=73.04  Aligned_cols=57  Identities=23%  Similarity=0.315  Sum_probs=34.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (175)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5999999999999999999998664321 12222222222222222   579999999643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.56  E-value=3.5e-08  Score=74.92  Aligned_cols=141  Identities=17%  Similarity=0.161  Sum_probs=77.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc------CCC----CCcccc-----------cceeeEEEEEEEEC------------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY------DKF----DNTYQA-----------TIGIDFLSKTMYLE------------   54 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~------~~~----~~~~~~-----------~~~~~~~~~~~~~~------------   54 (175)
                      .+..|+++|++|+||||++..|..      ...    .+.+.+           ..+++.+......+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            367899999999999999998863      111    001111           11111111000000            


Q ss_pred             -CeEEEEEEEeCCCcccccc-c---cc--ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           55 -DRTVRLQLWDTAGQERFRS-L---IP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        55 -~~~~~~~i~D~~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                       ...+.+.++||+|...... .   ..  .....+|.+++|+|+......   ......+...   -.+..+|+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCc
Confidence             0125789999999432111 1   11  113367999999998764322   2222333322   23456778999963


Q ss_pred             CCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524          128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      .    ....+.......++|+..++.  |++++
T Consensus       253 ~----~gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          253 A----KGGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             S----SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             c----cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence            2    233455666678888887765  66554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.46  E-value=6.7e-07  Score=68.03  Aligned_cols=84  Identities=17%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             EEEEEEEeCCCcccccc-c---cc--ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCC
Q 030524           57 TVRLQLWDTAGQERFRS-L---IP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-I-IVLVGNKTDLVE  128 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~iiv~nk~D~~~  128 (175)
                      .+.+.++||||...... .   ..  ..+..+|.+++|.|+....   ........+.    ... | ..+|+||+|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence            35689999999543211 1   11  1123689999999986543   2222222221    235 5 788899999632


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEe
Q 030524          129 KRQVSIEEGEAKSRELNVMFIET  151 (175)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~  151 (175)
                      .    ...........+.++..+
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    123444666677776655

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.45  E-value=7.1e-08  Score=68.74  Aligned_cols=93  Identities=14%  Similarity=0.057  Sum_probs=61.3

Q ss_pred             CCCcccc-cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 030524           65 TAGQERF-RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (175)
Q Consensus        65 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~  143 (175)
                      .|||... ...+...+.++|+++.|+|+.+|.+.....  +. +.     ++|.++++||+|+.+...  ......+...
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            3676532 235566789999999999999886654311  11 11     689999999999865311  1222334445


Q ss_pred             cCCeEEEeccCCCCCHHHHHHHHHH
Q 030524          144 LNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus       144 ~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      .++++ .+|+.++.|+++++..+.+
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67888 9999999999999887644

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.41  E-value=3e-07  Score=72.33  Aligned_cols=62  Identities=15%  Similarity=0.029  Sum_probs=37.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccc-cceeeEEEEEE--EE-CCeEEEEEEEeCCCcc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTM--YL-EDRTVRLQLWDTAGQE   69 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~   69 (175)
                      ...+|+++|.||+|||||+|+|++....-.... +.+.+.....+  .. ......+.++||||-.
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            458899999999999999999998753211111 11111111111  11 1122468999999954

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.34  E-value=3e-07  Score=69.82  Aligned_cols=91  Identities=14%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             EEEEEEEeCCCccc--ccc-c---ccc--cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524           57 TVRLQLWDTAGQER--FRS-L---IPS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (175)
Q Consensus        57 ~~~~~i~D~~G~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~  128 (175)
                      .+.+.++||||...  ... .   ...  ...+.|.+++|+|+......   ......+....   .+..+|+||.|.. 
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~---~~~gVIlTKlD~~-  251 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS---PIGSVIITKMDGT-  251 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC---SSEEEEEECGGGC-
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc---CCcEEEEeccccc-
Confidence            35688999999533  111 1   111  12256899999998765322   22223333222   3456788999953 


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                         .....+.......+.|+..++.  |+++
T Consensus       252 ---a~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          252 ---AKGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---SCHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---ccchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               2334566667778999888875  6665

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.30  E-value=2.3e-07  Score=67.38  Aligned_cols=91  Identities=19%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             cccccccccCCcEEEEEEECCChhhH-HhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHhcCCeE
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMF  148 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~  148 (175)
                      ..+.+..+.++|.+++|+|+.+|..- ..+.+++...   ...++|.++|+||+|+.++..  .............|.+.
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~---~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV---EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH---HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH---HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            34556678899999999999877533 2334333222   225789999999999865422  01123333444568899


Q ss_pred             EEeccCCCCCHHHHHHH
Q 030524          149 IETSAKAGFNIKLCCHT  165 (175)
Q Consensus       149 ~~~s~~~~~~v~~~f~~  165 (175)
                      +.+|+.++.|+++++..
T Consensus       154 ~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EECCHHHHTTCTTTGGG
T ss_pred             EEEecCCCCCHHHHHhh
Confidence            99999999988876653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.19  E-value=3.2e-06  Score=61.27  Aligned_cols=91  Identities=12%  Similarity=0.037  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCccc--ccc-ccc-----ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 030524           58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (175)
Q Consensus        58 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~  128 (175)
                      +.+.++||||...  ... ++.     .....+|.+++|.|....   +........+..    ..+ ..+++||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5689999999654  211 221     124478999999998643   222222222222    245 667889999532


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                          ........+...+.|+..++  .|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                23455667778888887776  4666543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.19  E-value=3.1e-06  Score=67.13  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ..|+|+|+.|||||||++.+.+-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            359999999999999999998864

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.14  E-value=8.1e-08  Score=73.93  Aligned_cols=101  Identities=12%  Similarity=0.082  Sum_probs=58.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc--cccccc--------cc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--RFRSLI--------PS   77 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~~--------~~   77 (175)
                      .+..|+++|.+|+||||+.++|...... ...++..+..........+......+||..|++  +.+..+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999998754211 111111111000000011111234678988873  233333        55


Q ss_pred             cccCCcEEEEEEECCChhhHHhHHHHHHHHHHh
Q 030524           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE  110 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  110 (175)
                      ++...++.++|+|.++. +.+....|+..+...
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            66678888999999987 455555665555443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.03  E-value=1.9e-05  Score=58.50  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=54.6

Q ss_pred             cccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHhcCCeEEEeccCC
Q 030524           78 YIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELNVMFIETSAKA  155 (175)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~  155 (175)
                      .+.|+|.+++|.+. +|. +...+.+++.....   .++|.++|+||+|+.++.... ...........|++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46799999988765 464 33334444333322   367889999999986532100 1112222335688999999999


Q ss_pred             CCCHHHHHHHH
Q 030524          156 GFNIKLCCHTL  166 (175)
Q Consensus       156 ~~~v~~~f~~l  166 (175)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999876643

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.91  E-value=1.7e-05  Score=60.45  Aligned_cols=25  Identities=12%  Similarity=0.118  Sum_probs=21.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +..-|.|+|++++|||+|+|+|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4566889999999999999999863

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.82  E-value=1.3e-05  Score=53.85  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=22.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-...-.|+++|++||||||+++.+.+.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3344567999999999999999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.72  E-value=1.9e-05  Score=52.84  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      --++++||+|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999998874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.71  E-value=2.1e-05  Score=52.64  Aligned_cols=22  Identities=27%  Similarity=0.664  Sum_probs=19.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +++++|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.67  E-value=3.2e-05  Score=52.55  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=22.6

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +....--|+|+||+|+|||||++.|.+.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3344557899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.67  E-value=2.5e-05  Score=53.14  Aligned_cols=23  Identities=17%  Similarity=0.509  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -.++|+||+|+|||||++.+.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999998763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.60  E-value=3.6e-05  Score=52.63  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=21.2

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ......|+++|+.|||||||++.+.+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999998766

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.59  E-value=3.7e-05  Score=52.24  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      --++++|++|||||||++.+.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999998874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.58  E-value=4.6e-05  Score=51.78  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ....|+++|++||||||+++.|.+..
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34578999999999999999987754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.58  E-value=4.5e-05  Score=51.81  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...-.|+|+|++||||||+++.|.+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.54  E-value=6.8e-05  Score=50.27  Aligned_cols=29  Identities=17%  Similarity=0.280  Sum_probs=23.4

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+......|+++|++||||||+.+.|...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            44455678999999999999999988654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.51  E-value=5.2e-05  Score=50.29  Aligned_cols=20  Identities=20%  Similarity=0.532  Sum_probs=17.6

Q ss_pred             eEEEECCCCCCHHHHHHHHh
Q 030524           11 KLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~   30 (175)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999644

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.51  E-value=7.7e-05  Score=49.68  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .....|+++|++||||||+.+.|..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.50  E-value=5.8e-05  Score=52.23  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      --++|+||.|||||||++.+.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            468899999999999999988753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.50  E-value=5.8e-05  Score=51.67  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      --|+++||+|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            458899999999999999998754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.50  E-value=6.4e-05  Score=51.40  Aligned_cols=29  Identities=17%  Similarity=0.211  Sum_probs=21.7

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|+-.+...|++.|++||||||+.+.|..
T Consensus         3 ~m~~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            3 HMAARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             ----CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44434557899999999999999998864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.49  E-value=6.6e-05  Score=50.58  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+|+||+||||+||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.49  E-value=5.8e-05  Score=52.13  Aligned_cols=24  Identities=33%  Similarity=0.647  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++|+||+|+|||||++.+.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            458999999999999999988743

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.49  E-value=0.00041  Score=52.84  Aligned_cols=84  Identities=14%  Similarity=0.023  Sum_probs=45.3

Q ss_pred             EEEEEEEeCCCcccccc-ccc-----ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 030524           57 TVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK  129 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~  129 (175)
                      .+.+.|+||||...... ...     ..+..++.+++|.|+....   ........+..    .++ .-+|+||.|... 
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~----~l~i~gvVlnK~D~~~-  254 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE----ALPLTGVVLTKVDGDA-  254 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH----HSCCCCEEEECTTSSS-
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc----cCCCeEEEEecCCCCc-
Confidence            35689999999543321 111     1244789999999987542   22222222322    233 235779999632 


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEe
Q 030524          130 RQVSIEEGEAKSRELNVMFIET  151 (175)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~  151 (175)
                      + .  ..+.......+.|+..+
T Consensus       255 ~-~--g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          255 R-G--GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             C-C--THHHHHHHHHCCCEEEE
T ss_pred             c-H--HHHHHHHHHHCCCeEEE
Confidence            2 1  23445555566654433

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.48  E-value=6.1e-05  Score=51.47  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      --++++|+.|+|||||++.+.+-.
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            357899999999999999987743

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.47  E-value=7.4e-05  Score=49.56  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|+++|++||||||+...|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.47  E-value=0.00027  Score=51.22  Aligned_cols=21  Identities=33%  Similarity=0.686  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHh
Q 030524           10 YKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~   30 (175)
                      -.++++|++|+|||||+|.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999998

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.45  E-value=7.2e-05  Score=50.99  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..-|+|+|++||||||+++.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999998764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.44  E-value=8.4e-05  Score=50.82  Aligned_cols=24  Identities=13%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....|+|+|++|||||||++.+.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.44  E-value=0.0001  Score=48.88  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999886

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.43  E-value=8e-05  Score=49.16  Aligned_cols=23  Identities=17%  Similarity=0.366  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988763

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.43  E-value=0.00012  Score=48.43  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-.|+++|++||||||+.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.43  E-value=9.2e-05  Score=48.73  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q 030524           10 YKLVFLGDQSVGKTSIITRF   29 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l   29 (175)
                      ..|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.41  E-value=0.00012  Score=49.04  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....|++.|++||||||+.+.|..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.39  E-value=0.0001  Score=54.59  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~   34 (175)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999998653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.38  E-value=9.7e-05  Score=48.60  Aligned_cols=22  Identities=9%  Similarity=0.270  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .|++.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.38  E-value=0.0001  Score=49.52  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .++++|++|+||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.37  E-value=0.00011  Score=51.40  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999888753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.35  E-value=0.00016  Score=49.01  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=22.1

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...+..|+|+|++||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.34  E-value=0.00014  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHh
Q 030524            9 KYKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~   30 (175)
                      .-.|+|+|++||||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999988

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.32  E-value=0.00014  Score=49.85  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.32  E-value=0.00015  Score=49.03  Aligned_cols=31  Identities=13%  Similarity=0.103  Sum_probs=22.2

Q ss_pred             CCCCCCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |..++.. +..|+|+|++||||||+.+.|...
T Consensus         1 ~~~~~~~-~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEAKH-PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -----CC-CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcccC-ceEEEEECCCCCCHHHHHHHHHHC
Confidence            3444443 478999999999999999988764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.30  E-value=0.00025  Score=48.04  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=21.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .....|+|.|++||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.30  E-value=0.00014  Score=47.60  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358899999999999999988754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.30  E-value=0.00015  Score=49.72  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.30  E-value=0.00015  Score=49.03  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999988764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.28  E-value=0.00016  Score=49.81  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..|+++|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998765

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.00015  Score=49.19  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..|+|+|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.27  E-value=0.00014  Score=50.47  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.27  E-value=0.0002  Score=48.00  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +..|++.|++||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.27  E-value=0.00017  Score=50.57  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.26  E-value=0.00015  Score=51.46  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =.++++|++|||||||++.+.+-
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            35899999999999999988763

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.00018  Score=48.83  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.|+++|++||||||+...|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.26  E-value=0.00022  Score=47.28  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999998763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.26  E-value=0.00019  Score=48.03  Aligned_cols=22  Identities=27%  Similarity=0.178  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.26  E-value=0.00023  Score=47.54  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.25  E-value=0.00018  Score=49.24  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .|+++|+|||||+|...+|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999987653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.25  E-value=0.00018  Score=49.54  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.25  E-value=0.00022  Score=50.02  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+.+|+|.|++||||||+...|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.25  E-value=0.00029  Score=48.64  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=18.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -|+++|+|||||+|....|...
T Consensus        31 iI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999987653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.25  E-value=0.00019  Score=50.22  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.25  E-value=0.00021  Score=51.76  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++++|++|+|||||+|.+.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            357899999999999999998754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.25  E-value=0.0002  Score=49.29  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.25  E-value=0.00022  Score=48.55  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.25  E-value=0.00017  Score=52.31  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      =.++|+|++|+|||||++.+.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            4689999999999999998875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.25  E-value=0.00018  Score=51.49  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999988753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.24  E-value=0.00018  Score=51.06  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.24  E-value=0.00016  Score=48.17  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.++++|++|+|||||+..+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.23  E-value=0.00019  Score=51.10  Aligned_cols=23  Identities=13%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999988753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.23  E-value=5.3e-05  Score=55.05  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++++|++|+|||||+|.+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.22  E-value=0.0002  Score=47.70  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..++++|++|+|||||+++++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35789999999999999998864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.22  E-value=0.00022  Score=47.83  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +..|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.22  E-value=0.0002  Score=50.74  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.21  E-value=0.0002  Score=48.64  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=21.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..-.|+++|++|+||||+.+.|.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999987653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.21  E-value=0.00029  Score=47.94  Aligned_cols=23  Identities=26%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|++.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.21  E-value=0.00024  Score=50.00  Aligned_cols=28  Identities=14%  Similarity=0.259  Sum_probs=21.4

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ++....+.|+|.|++||||||+.+.|..
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3444568899999999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.21  E-value=0.00011  Score=50.95  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=15.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHh-cC
Q 030524           10 YKLVFLGDQSVGKTSIITRFM-YD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~-~~   32 (175)
                      --++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358899999999999999998 54

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.21  E-value=0.00021  Score=49.67  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.20  E-value=0.00019  Score=48.74  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+|+++|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999998875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.20  E-value=0.00022  Score=50.17  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.20  E-value=0.00032  Score=49.22  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.20  E-value=0.00025  Score=51.02  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..+.-|+++|++||||||+...|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.19  E-value=0.00022  Score=50.70  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999988753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.19  E-value=0.0003  Score=51.25  Aligned_cols=25  Identities=16%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....-|+|+|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4557899999999999999998766

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.19  E-value=0.00021  Score=47.82  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.19  E-value=0.00023  Score=48.08  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.18  E-value=0.00023  Score=50.40  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.18  E-value=0.00023  Score=49.90  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.17  E-value=0.00026  Score=47.24  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..|+++|++||||||+...|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.17  E-value=0.00024  Score=50.07  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.16  E-value=0.00024  Score=49.20  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+|+|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.16  E-value=0.00026  Score=50.22  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999988753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.16  E-value=0.00035  Score=47.54  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ....|+++|++||||||+.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.15  E-value=0.00026  Score=49.92  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.14  E-value=0.00036  Score=51.01  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..++-|+++|++|||||||++.+.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988743

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.14  E-value=0.00026  Score=50.54  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.14  E-value=0.00035  Score=47.30  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ...|+|.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999998764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.14  E-value=0.00026  Score=48.75  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=20.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.14  E-value=0.00028  Score=50.27  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=20.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.13  E-value=0.0003  Score=50.47  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.13  E-value=0.00031  Score=47.81  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=21.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....|++.|++||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356799999999999999998865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.12  E-value=0.00028  Score=49.87  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.12  E-value=0.00026  Score=48.48  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.12  E-value=0.00044  Score=46.21  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....|+++|++||||||+.+.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457799999999999999998765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.11  E-value=0.00036  Score=48.89  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....|+|+|+.|||||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998866

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.11  E-value=0.00018  Score=49.27  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.11  E-value=0.00029  Score=50.11  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.10  E-value=0.00025  Score=48.88  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -++++|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999873

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.10  E-value=0.00043  Score=49.89  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=21.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..+..|+|+|++|||||||++.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999987654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.08  E-value=0.00034  Score=46.99  Aligned_cols=23  Identities=13%  Similarity=0.263  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+++|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.07  E-value=0.00037  Score=49.51  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.06  E-value=0.00031  Score=49.50  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=21.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...+..|+++|++||||||+...|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.05  E-value=0.00032  Score=52.06  Aligned_cols=22  Identities=14%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|++|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.05  E-value=0.00014  Score=48.24  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++|+|++|||||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.04  E-value=0.00043  Score=45.32  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.04  E-value=0.00025  Score=51.54  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CEEEEECCCCchHHHHHHHHHcCC
Confidence            368999999999999999887643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.03  E-value=0.00044  Score=47.76  Aligned_cols=21  Identities=14%  Similarity=0.199  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.02  E-value=0.00039  Score=49.09  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -|+++|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.00  E-value=0.00034  Score=52.04  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .-+++|+|++|+|||||++.+.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999988753

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.00  E-value=0.00024  Score=46.07  Aligned_cols=23  Identities=13%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -.++++|++|+|||+|++.+.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999998764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.00  E-value=0.00046  Score=45.68  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..+.++|++|||||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.99  E-value=0.00041  Score=49.57  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++||+|+|||+|++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999998763

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.99  E-value=0.00044  Score=46.56  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.97  E-value=0.00045  Score=48.53  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.97  E-value=0.00059  Score=46.31  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....|+++|++||||||+++.+.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.96  E-value=0.00052  Score=45.13  Aligned_cols=21  Identities=14%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.96  E-value=0.00041  Score=51.43  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++||.|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999988754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.96  E-value=0.00046  Score=51.52  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =.++++|++||||||+++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999998763

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.95  E-value=0.0005  Score=45.82  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|+++|++||||||+...|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.95  E-value=0.0006  Score=50.14  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5689999999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.95  E-value=0.0005  Score=46.02  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.95  E-value=0.00055  Score=49.72  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .....|+|+|+.|||||||++.+.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998776

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.95  E-value=0.0005  Score=50.95  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.95  E-value=0.00068  Score=46.50  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +..|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.95  E-value=0.00055  Score=45.40  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.95  E-value=0.00041  Score=51.59  Aligned_cols=24  Identities=25%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++++|++|||||||++.+.+-.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            478999999999999999988753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.94  E-value=0.00045  Score=47.47  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.94  E-value=0.00048  Score=49.99  Aligned_cols=84  Identities=15%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             EEEEEeCCCcccccc------------cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524           59 RLQLWDTAGQERFRS------------LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~  126 (175)
                      .+.+.|++|......            ..+......+.++++.|......   +...+..+....  +.. ++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~--~~t-~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV--GLT-GVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH--CCS-EEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc--CCc-EEEEECCcc
Confidence            356889999432111            11123346788888999876532   222333333322  233 456799985


Q ss_pred             CCCCCCCHHHHHHHHHhcCCeEEEec
Q 030524          127 VEKRQVSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (175)
                      .. +   ...........+.|+..+.
T Consensus       260 ~a-~---gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TA-K---GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SC-C---CTTHHHHHHHHCCCEEEEE
T ss_pred             cc-c---ccHHHHHHHHHCCCeEEEe
Confidence            32 1   1234456667788776664

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.94  E-value=0.00053  Score=50.96  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++|+.|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999888753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.94  E-value=0.00043  Score=50.85  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++++|++|||||||++.+.+-.
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999988754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.93  E-value=0.00052  Score=50.92  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999988753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.93  E-value=0.00048  Score=49.64  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999988753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.92  E-value=0.00055  Score=50.88  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999988753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.92  E-value=0.00054  Score=48.50  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.92  E-value=0.00055  Score=51.15  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++||.|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999988754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.92  E-value=0.00017  Score=49.21  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.92  E-value=0.00062  Score=47.98  Aligned_cols=21  Identities=14%  Similarity=0.215  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHh
Q 030524           10 YKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~   30 (175)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999887

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.91  E-value=0.00064  Score=47.38  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .++.|.+.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998763

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.91  E-value=0.00075  Score=48.36  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHh
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~   30 (175)
                      ....|+|.|++||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999876

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.90  E-value=0.00073  Score=49.36  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.89  E-value=0.00078  Score=46.79  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+|+|++||||||+...|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.89  E-value=0.00053  Score=51.96  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++|+|++||||||+++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999998874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.89  E-value=0.00057  Score=49.57  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-.++++|+.||||||++..+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45788999999999999998865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.88  E-value=0.00061  Score=50.80  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999988753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.88  E-value=0.0006  Score=50.88  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999988754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.88  E-value=0.00039  Score=46.21  Aligned_cols=23  Identities=22%  Similarity=0.124  Sum_probs=16.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.88  E-value=0.00086  Score=49.17  Aligned_cols=141  Identities=15%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCc----------cc-----------ccceeeEEEEEEEE-------------
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQ-----------ATIGIDFLSKTMYL-------------   53 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~----------~~-----------~~~~~~~~~~~~~~-------------   53 (175)
                      ..--++++|+.|+||||++..+.+...+..          +.           ...++.+.......             
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            457899999999999999998875211000          00           00011111000000             


Q ss_pred             CCeEEEEEEEeCCCccccccc-ccc-----cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           54 EDRTVRLQLWDTAGQERFRSL-IPS-----YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      ......+.+.|++|....... ...     ..-..|-.+++.|.....   .+......+....  ++. .+++||.|..
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~it-~iilTKlD~~  281 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--KID-GIILTKLDAD  281 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--CCC-EEEEECGGGC
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--CCC-EEEEeCcCCc
Confidence            001124567999995432221 111     122478889999976542   3333333343322  233 5667999952


Q ss_pred             CCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524          128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      .    ........+...+.|+..++  .|++++
T Consensus       282 a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          282 A----RGGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             S----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             c----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            1    22345667777888888876  666654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.88  E-value=0.00073  Score=44.32  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999998754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.87  E-value=0.00082  Score=44.59  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+++|++||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.87  E-value=0.00053  Score=53.29  Aligned_cols=24  Identities=21%  Similarity=0.456  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++++|++||||||+++.+++-.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            459999999999999999988754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.85  E-value=0.00063  Score=49.96  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -.++++||+|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999988763

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.83  E-value=0.00069  Score=48.33  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4899999999999999998864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.82  E-value=0.0023  Score=48.85  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=19.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHh
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~   30 (175)
                      .-.-|.|+|+.++|||+|+|.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            44667799999999999999654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.81  E-value=0.00072  Score=46.52  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -++++|++|+|||||+..+.+
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.81  E-value=0.00049  Score=50.86  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999988753

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.80  E-value=0.00094  Score=45.13  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=21.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+..|+++|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4688999999999999999987653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.80  E-value=0.00087  Score=46.49  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ...-|+|.|+.||||||+++.+.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4467999999999999999988764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.79  E-value=0.0015  Score=41.74  Aligned_cols=24  Identities=8%  Similarity=0.159  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            457999999999999999876653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.74  E-value=0.00076  Score=50.62  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.74  E-value=0.0007  Score=44.75  Aligned_cols=24  Identities=38%  Similarity=0.623  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.+++.|++|+|||+++..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999987653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.74  E-value=0.00088  Score=47.20  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.|+++|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.73  E-value=0.00097  Score=46.03  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-.+++.|++|+|||+++..+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.73  E-value=0.0011  Score=47.67  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.72  E-value=0.0014  Score=45.52  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ...-|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.71  E-value=0.0011  Score=44.85  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999987753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.70  E-value=0.00096  Score=44.32  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=18.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.70  E-value=0.0013  Score=47.31  Aligned_cols=25  Identities=16%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+..+++.||||+|||+|...+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456778899999999999988753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.69  E-value=0.00097  Score=49.50  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-.|+++|+.||||||++..+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            45789999999999999998765

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.69  E-value=0.0014  Score=44.80  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+++|++|+||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998765

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.69  E-value=0.0013  Score=46.19  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +-.++++|++|+|||++++.+.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            44699999999999999998875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.68  E-value=0.00049  Score=50.97  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.68  E-value=0.0013  Score=42.58  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 030524           12 LVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~   30 (175)
                      .+|+|+.|+||||+++.+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4788999999999999875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.67  E-value=0.0017  Score=49.12  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+.-|+++|++||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456888999999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.00087  Score=51.43  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.++|+|+.|+|||||++.+++-.
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcc
Confidence            468999999999999999988753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.65  E-value=0.0011  Score=45.19  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      --++++|++|+|||||+..+..
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.65  E-value=0.0011  Score=45.90  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -+.++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.64  E-value=0.00093  Score=48.06  Aligned_cols=22  Identities=9%  Similarity=0.305  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.64  E-value=0.0011  Score=51.20  Aligned_cols=91  Identities=13%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCcccccc-cc---c-------cc-ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524           58 VRLQLWDTAGQERFRS-LI---P-------SY-IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~-~~---~-------~~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                      +.+.++||+|...... .+   .       .. ....+-++++.|.+....   .......+....  ++.. +++||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~--~itg-vIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV--GLTG-ITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT--CCSE-EEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc--CCCE-EEEEcCC
Confidence            3578999999532211 11   1       11 113567888999765421   112223333322  3333 5679999


Q ss_pred             CCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524          126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      -.  ..  ...+...+..++.++..+.  .|++++
T Consensus       450 ~t--ak--gG~~lsi~~~~~~PI~fig--~Ge~vd  478 (503)
T 2yhs_A          450 GT--AK--GGVIFSVADQFGIPIRYIG--VGERIE  478 (503)
T ss_dssp             GC--SC--CTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             Cc--cc--ccHHHHHHHHHCCCEEEEe--cCCChh
Confidence            42  22  2245667777788877753  455543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.58  E-value=0.0012  Score=49.25  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999998875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.58  E-value=0.0011  Score=45.31  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.+++.||||+|||+++..+..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999887765

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.57  E-value=0.002  Score=44.57  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=22.0

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ||......-|++.|.+||||||+++.|..
T Consensus        15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           15 QTQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45556677899999999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.56  E-value=0.0017  Score=45.15  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=20.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+.+++++|+|||||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            458999999999999999998754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.55  E-value=0.0013  Score=48.65  Aligned_cols=24  Identities=13%  Similarity=0.308  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =+++++|+.|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998864

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.54  E-value=0.002  Score=41.26  Aligned_cols=25  Identities=8%  Similarity=0.070  Sum_probs=21.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ....|++.|++|+|||++...+...
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.52  E-value=0.00087  Score=48.91  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++|+.|||||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            45778999999999999999753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.52  E-value=0.0022  Score=47.04  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-|+|+||+|||||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.51  E-value=0.0022  Score=46.55  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=20.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+.-|+|+||+|||||+|...|...
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh
Confidence            3456888999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.49  E-value=0.0016  Score=44.19  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ...|+|+|++|+|||+|...|..+.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999998764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.46  E-value=0.0013  Score=45.59  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=17.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +..-|++.|++||||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.0018  Score=46.13  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..-.+++.|++|+|||++++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999998753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.46  E-value=0.0018  Score=43.92  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+++.|++|+|||+++..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.46  E-value=0.0022  Score=44.58  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=20.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....|+++|++||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.45  E-value=0.0022  Score=44.96  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+..+++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999998875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.45  E-value=0.0018  Score=44.49  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+++.|++|+|||+++..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998865

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.43  E-value=0.0019  Score=46.36  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.42  E-value=0.0026  Score=45.86  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=19.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....+++.|+||+|||+++..+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999986554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.42  E-value=0.0018  Score=49.91  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999998865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.42  E-value=0.0024  Score=50.42  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999988753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.42  E-value=0.0021  Score=50.80  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|+|||||++.+.+-.
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcc
Confidence            368999999999999999887753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.40  E-value=0.0022  Score=43.32  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|.+.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.38  E-value=0.003  Score=49.47  Aligned_cols=24  Identities=13%  Similarity=0.214  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|+|||||++.+.+-.
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999988754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.38  E-value=0.002  Score=46.97  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.+++.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.37  E-value=0.0022  Score=47.73  Aligned_cols=19  Identities=26%  Similarity=0.400  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 030524           12 LVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~   30 (175)
                      .+|+|+.|+|||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4589999999999999876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.36  E-value=0.0019  Score=49.30  Aligned_cols=24  Identities=13%  Similarity=0.260  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =+++++|+.|+|||||++.+.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            368999999999999999988754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.36  E-value=0.0033  Score=44.54  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=22.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .....+++.|++|+|||+++..+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44568999999999999999988763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.35  E-value=0.0024  Score=43.66  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +..|++.|++||||||+...|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988755

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.33  E-value=0.0019  Score=46.06  Aligned_cols=21  Identities=10%  Similarity=0.132  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.33  E-value=0.0023  Score=46.18  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.+++.|++|+|||+|++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999998763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.32  E-value=0.0031  Score=49.38  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999988753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.27  E-value=0.0034  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-|+|+||+|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            45788999999999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.0036  Score=49.69  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999988743

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.23  E-value=0.002  Score=50.85  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|+|||||++.+.+-.
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            368999999999999999877643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.20  E-value=0.0027  Score=44.02  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=17.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -++++|++|+|||+|+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999877654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.20  E-value=0.0029  Score=45.45  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +-.+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.20  E-value=0.0025  Score=50.56  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|+|||||++.+.+-.
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            368999999999999999887743

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.19  E-value=0.003  Score=45.81  Aligned_cols=86  Identities=17%  Similarity=0.127  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCcccccc-c----------ccccc-cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524           58 VRLQLWDTAGQERFRS-L----------IPSYI-RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~-~----------~~~~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                      ..+.+.|+||...... .          +...+ ..++.+++|.|....  .+.+.. ...+...  .++. -+++||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~i~-gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VNVT-GIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SCCC-EEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CCCC-EEEEeCCC
Confidence            3589999999532111 1          11111 247889999998633  222222 2233322  2233 34569999


Q ss_pred             CCCCCCCCHHHHHHHHHhcCCeEEEecc
Q 030524          126 LVEKRQVSIEEGEAKSRELNVMFIETSA  153 (175)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (175)
                      ...  .  ...+.......+.|+..+..
T Consensus       261 ~~~--~--gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTA--K--GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCS--C--TTHHHHHHHHHCCCEEEEEC
T ss_pred             Ccc--c--hHHHHHHHHHHCCCEEEEeC
Confidence            532  2  22477778888888777743

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.18  E-value=0.0027  Score=45.82  Aligned_cols=85  Identities=14%  Similarity=0.062  Sum_probs=47.1

Q ss_pred             EEEEEEeCCCcccccc-c---cccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524           58 VRLQLWDTAGQERFRS-L---IPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~-~---~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                      ..+.++||+|...... .   ....+.  ..+..++|+|.+..  ...+..+...+.   ..+. .-++.||.|...   
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~---  253 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETT---  253 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCS---
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCccc---
Confidence            4689999999653322 1   112222  36788889987643  233333322222   1122 245569999642   


Q ss_pred             CCHHHHHHHHHhcCCeEEEec
Q 030524          132 VSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (175)
                       ....+...+...++|+..++
T Consensus       254 -~~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 -SLGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             -CCHHHHHHHHTCSCCCSEEC
T ss_pred             -chhHHHHHHHHHCcCEEEEE
Confidence             12356667778888765554

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.18  E-value=0.0023  Score=45.19  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=21.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +...|+|.|.+||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3577899999999999999987653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.17  E-value=0.0043  Score=49.25  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|+|||||++.+.+..
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            358999999999999999988753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.16  E-value=0.0033  Score=46.65  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++|.|++|+|||++++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.16  E-value=0.003  Score=46.35  Aligned_cols=21  Identities=38%  Similarity=0.610  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +++.||+|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.16  E-value=0.0024  Score=46.89  Aligned_cols=20  Identities=20%  Similarity=0.394  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998776

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.15  E-value=0.0043  Score=48.58  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.15  E-value=0.0015  Score=46.99  Aligned_cols=24  Identities=13%  Similarity=0.222  Sum_probs=17.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +.+-|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999988754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.14  E-value=0.0051  Score=44.29  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -.++++|++|+|||+++..+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46899999999999999987653

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.14  E-value=0.0036  Score=41.80  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+++|.++||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.14  E-value=0.0027  Score=46.93  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=20.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.+++.|++|+|||+|++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988763

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.14  E-value=0.0035  Score=45.52  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988765

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.14  E-value=0.0029  Score=50.08  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999987764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.12  E-value=0.0028  Score=46.88  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      --+.|+|++|+|||||+..++..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999998875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0041  Score=47.31  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+-.|++.||||+|||.|...+.+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHH
Confidence            356899999999999999999876

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.10  E-value=0.0041  Score=43.30  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +..|++.|.+||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.10  E-value=0.0051  Score=48.15  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998854

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.10  E-value=0.0041  Score=42.28  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 030524           12 LVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~   30 (175)
                      .+|+|+.|+||||+++.+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5688999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.08  E-value=0.0037  Score=45.63  Aligned_cols=24  Identities=13%  Similarity=0.271  Sum_probs=20.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.|++.||||+|||+|+..+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999998763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.07  E-value=0.0054  Score=48.73  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998854

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.0044  Score=47.07  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=20.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+-.|++.||||+|||+|+..+.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.05  E-value=0.0054  Score=42.07  Aligned_cols=24  Identities=13%  Similarity=0.137  Sum_probs=20.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...-|++.|++||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            456788999999999999998754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.04  E-value=0.0039  Score=45.42  Aligned_cols=23  Identities=13%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...+++.|+||+|||+|+..+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999998865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.02  E-value=0.0066  Score=44.90  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=19.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..+|+++|++|+||||+...+..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999986644

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.00  E-value=0.0045  Score=43.20  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=20.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...-|++.|++||||||+++.|..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0052  Score=46.80  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+-.|++.||||+|||+|...+.+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            356899999999999999999875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.97  E-value=0.0044  Score=45.85  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=21.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999988753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.96  E-value=0.0043  Score=45.45  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.94  E-value=0.0051  Score=40.79  Aligned_cols=25  Identities=16%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -.-+++.|++|+||||+.-.|..+.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            3568999999999999999988753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.0065  Score=48.26  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKF   34 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~   34 (175)
                      ++++|+.|+|||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            78999999999999999887543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.91  E-value=0.0019  Score=45.59  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.+++.|++|+|||+|++.+..
T Consensus        45 ~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            3588999999999999998865

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.90  E-value=0.0093  Score=40.14  Aligned_cols=84  Identities=8%  Similarity=0.061  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCHH
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIE  135 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nk~D~~~~~~~~~~  135 (175)
                      +.+.++|+|+.-  .......+..+|.+|++...+. .+ ..+...++.+....  .++.++.+|.|+.+....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            578999999754  2344455667999999998754 34 56666666665433  245777899999994221   223


Q ss_pred             HHHHHHHhcCCeE
Q 030524          136 EGEAKSRELNVMF  148 (175)
Q Consensus       136 ~~~~~~~~~~~~~  148 (175)
                      +..+...+++.++
T Consensus       149 ~~~~~l~~~~~~v  161 (206)
T 4dzz_A          149 VLKESIKDTGVKA  161 (206)
T ss_dssp             HHHHHHHHHTCCB
T ss_pred             HHHHHHHHcCCce
Confidence            3444455555443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.89  E-value=0.0058  Score=45.44  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ...+++.|++|+|||++...+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.0058  Score=45.96  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+-.|++.||||+|||.|...+.+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHH
Confidence            356799999999999999999875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.85  E-value=0.0048  Score=47.04  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.+++.|++|+|||+|++.+.+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998765

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.85  E-value=0.0062  Score=45.08  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ....+++.||||+|||++...+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999987653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.84  E-value=0.0047  Score=45.62  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.+++.||||+|||+++..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998865

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.82  E-value=0.0066  Score=44.32  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -.+++.|++|+|||++++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999998653

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.81  E-value=0.0046  Score=47.56  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-+++++|+||+|||++++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999987653

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.80  E-value=0.0031  Score=49.50  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..-.|+|+|++|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3467999999999999999988764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.80  E-value=0.0057  Score=44.59  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -++|.|++|+|||+|++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5788999999999999998754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.80  E-value=0.0052  Score=48.17  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.++++||+|+|||||++.+.+
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-46
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-43
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-43
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-42
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-42
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-41
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-41
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-39
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-39
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-37
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-37
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-35
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-35
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-35
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-34
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	7e-32
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-31
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-31
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	7e-31
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-30
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-30
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	9e-30
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	9e-30
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-29
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-29
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-28
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-28
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-27
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-27
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-27
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-26
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-25
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-25
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	9e-25
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-24
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-24
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-24
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-24
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-24
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-23
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-21
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-21
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-20
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-20
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-20
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-19
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-19
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	8e-19
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-18
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-17
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-16
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-16
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	9e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-15
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-14
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-08
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-04
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.001
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.002
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	0.002
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.003

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  146 bits (370), Expect = 4e-46
 Identities = 67/157 (42%), Positives = 105/157 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+ + +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           RQVS E GE  + +  + F+ETSAKA  N++    TL
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 2e-43
 Identities = 127/162 (78%), Positives = 145/162 (89%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRSLIPSYIRDS+ AVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +K
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLIT 171
           RQVSIEEGE K++ELNVMFIETSAKAG+N+K     + + + 
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 162

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  139 bits (351), Expect = 3e-43
 Identities = 66/161 (40%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 121

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V+ ++GEA ++EL + FIE+SAK   N+     TL  LI
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 4e-42
 Identities = 64/157 (40%), Positives = 96/157 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R+VS +  E  S   ++ ++ETSAK   N++     L
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 7e-42
 Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           +R V  E+GE  ++E  + F+ETSAK G N+ L    +
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 164

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  136 bits (342), Expect = 1e-41
 Identities = 65/161 (40%), Positives = 99/161 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R S   ++VYDV  ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R V  +  +  +    + F+ETSA    N++    T+   I
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 4e-41
 Identities = 57/157 (36%), Positives = 106/157 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  +E  A + + N+ FIETSA    N++     +
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (322), Expect = 8e-39
 Identities = 60/161 (37%), Positives = 98/161 (60%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           R VS E G   +  L   F E SAK   N+K     L  +I
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 8e-39
 Identities = 55/157 (35%), Positives = 97/157 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V+ EE +  + E  ++F+E SAK G N++      
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 161

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 1e-37
 Identities = 59/161 (36%), Positives = 93/161 (57%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDT
Sbjct: 4   VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQERFR+L PSY R +   ++VYDV  R +F+    W++E+ T    + I+ ++     
Sbjct: 64  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
             E R+V   EG   +R+ +++FIE SAK    ++     L
Sbjct: 124 DKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 164

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 2e-37
 Identities = 59/157 (37%), Positives = 105/157 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R V  EEGEA +RE  ++F+ETSAK   N++      
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 160

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 1e-35
 Identities = 57/157 (36%), Positives = 98/157 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++   + W+ + R     +++I+L GNK DL   
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R+V+  E    ++E  +MF+ETSA  G N++      
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 162

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++     +   IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           L+GNK DL ++R+V+  +    + +  + + ETSA  G N++    TL  LI
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 2e-35
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV 127
           E+F S+   YI++    ++VY + ++QSF +     D++   +    V ++LVGNK DL 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            +R+VS  EG A + E    F+ETSAK+   +      +
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (292), Expect = 2e-34
 Identities = 62/160 (38%), Positives = 105/160 (65%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A+VVYD+ + +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
             KR V  +E ++ + + +++F+ETSAK   N+      +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 7e-32
 Identities = 62/157 (39%), Positives = 97/157 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y RDS+ A++VYD+    SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           R VSI+E E+ +  +      TSAK    I+     L
Sbjct: 124 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 160

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  109 bits (272), Expect = 2e-31
 Identities = 54/162 (33%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T+ + +++   +   +V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+      L
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 3e-31
 Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 6/162 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +Q+WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR----TERGSDVIIVLVGNKTD 125
           RFRSL   + R S   ++ + V   QSF N S W  E       +       V++GNK D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 126 LVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCHTL 166
           + E RQVS EE +A  R+  +  + ETSAK   N+       
Sbjct: 127 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 7e-31
 Identities = 59/161 (36%), Positives = 94/161 (58%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           AL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG ERFR+L P Y R S+ A++VYD+   ++F     W+ E+R      +++ + GNK D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L + R+V   + +  +  ++ +F+ETSAK   NI      +
Sbjct: 121 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 161

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 4e-30
 Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 3/161 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ ++++  +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            +  R V   + +  +R   + +IETSAK    ++   +TL
Sbjct: 120 -LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 5e-30
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 14/164 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            +  L P     + V +V + V S  SF N  +      T        +LVG + DL + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 130 RQV------------SIEEGEAKSRELNVM-FIETSAKAGFNIK 160
                          + E  E  +R+L  + ++E SA     +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 9e-30
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 14/170 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            +  L P     + V+++ + + S  SF N              +  I+LVG K DL + 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 130 RQVSIE------------EGEAKSRELN-VMFIETSAKAGFNIKLCCHTL 166
           +    +            +G A ++E+  V ++E SA     +K      
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (261), Expect = 9e-30
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 70  RFRSL-IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLV 127
           RFR   +  Y R+    V VYD+ +  SF +   WI+E +    + D+  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
              QV  +  +  +   ++   ETSAK   + 
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDN 154

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 2e-29
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KY+LV +G   VGK+++  +F+   F   Y  TI  D  +K   ++DR  RL + DTAGQ
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQ 63

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ V  R SF    K+  + +R +   +  ++L+GNK DL 
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            +RQV+ EEG+  +R+L V ++E SAK   N+    H L  +I
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 6e-29
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 14/173 (8%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
            L+DTAGQE +  L P     + V ++ + V +  SF N  +       E   +V  +L+
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 121 GNKTDLVEKRQ------------VSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           G + DL +  +            + +E+G+  ++E+    ++E SA     +K
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 172

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 3e-28
 Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 3/159 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL---V 127
           F SL P Y R++  A+VVYDV   QSF+    W+ E+  +   D+II LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            +R+V+ EEGE  + E  ++F ETSAK G N+      +
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 4e-28
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 2/159 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            +KLV +G   VGK+++  +F+   F + Y      D  +K   ++    RL + DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ +  RQSF    K   ++   +  D   +VLVGNK DL 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            +RQV   E  A     +V + E SAK   N+      L
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 163

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 1e-27
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 14/165 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  +     + ++ + V L LWDTAG 
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGL 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E +  L P    D+ V ++ + + S  S  N  +           +V I+LVGNK DL  
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 129 KRQV------------SIEEGEAKSRELNVM-FIETSAKAGFNIK 160
                             EEG   +  +    ++E SAK    ++
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.8 bits (247), Expect = 1e-27
 Identities = 59/161 (36%), Positives = 94/161 (58%), Gaps = 4/161 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV +  +F     W DE   +       +   V++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           L  ++  +         + N+ + ETSAK   N++    T+
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 163

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 3e-27
 Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 3/160 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID-EVRTERGSDVIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY + ++ +F +     +  +R +   DV ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKLCCHTL 166
           ++R V  E+G+  +R+  N  F+E+SAK+  N+    + L
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.0 bits (240), Expect = 2e-26
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 14/164 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G 
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGS 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
             + ++ P    DS   ++ +D++  ++  +  K       E   +  ++LVG K+DL  
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 129 ------------KRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
                       +  VS ++G   ++++    +IE SA    N 
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.7 bits (234), Expect = 1e-25
 Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV +GD  VGK+++  +F    F   Y  TI  D   K   ++++   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY V  + SF +  ++   + R +      ++LV NK DL+ 
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKLCCHTL 166
            R+V+ ++G+  + + N+ +IETSAK    N+    H L
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 162

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (233), Expect = 1e-25
 Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  +Y R +   V+V+    R+SF   S W ++V  E G D+   LV NK DL++  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            +  EE E  ++ L + F  TS K   N+      L
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 158

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 92.7 bits (229), Expect = 9e-25
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T   TIG +       L  + ++L +WD  GQ
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNV----ETLSYKNLKLNVWDLGGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL- 126
              R     Y  D++  + V D   +      SK +  +  E    D  +++  NK D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
             +   +VS E    + ++ +   + +SA  G  I      L  +I
Sbjct: 132 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 1e-24
 Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E+F  L   Y   +  A++++DV SR ++ N   W  ++      ++ IVL GNK D+ +
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKD 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           ++  +        R+ N+ + + SAK+ +N +     L
Sbjct: 122 RKVKAKSIVFH--RKKNLQYYDISAKSNYNFEKPFLWL 157

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 1e-24
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 9/162 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +   T      + F  +T+    + V+  +WD  GQ
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVGFNVETVT--YKNVKFNVWDVGGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDL- 126
           ++ R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
             ++  ++  + G  + R+ N     + A +G  +      L
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 168

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.1 bits (227), Expect = 1e-24
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL-QLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++   V   Q+WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW----IDEVRTERGSDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV +  SF N   W    +             V++GNK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 125 DLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIKLCCHTL 166
           D  E +++  E+   +  +   ++    TSAK   N+      +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 2e-24
 Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +       T           +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV----GNKTDL 126
            R L   Y +++   + V D   R+      + +  +  E      ++LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           +   +++ + G    R  N     T A +G  +      L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 3e-24
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV 127
           +F ++    I      ++VY + SRQS        +++   +G    + I+LVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
             R+V   E EA +R     F+ETSAK   N+K     L +L 
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 2e-23
 Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAG
Sbjct: 1   AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDL 126
           QE        ++R     V+VYD+  R SF       + +   +   +V ++LVGNK DL
Sbjct: 60  QEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 118

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKLCCHTL 166
              RQVS EEGE  + EL   F E SA  G  NI    + L
Sbjct: 119 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 159

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 3e-21
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T               +     R  +WD  GQ
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-----EIVINNTRFLMWDIGGQ 69

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDL- 126
           E  RS   +Y  ++   +VV D   R+    T + + ++          +++  NK D+ 
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             +   ++S        ++         A  G  + 
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 4e-21
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 2/159 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             K+  LG +SVGK+S+  +F+  +F ++Y  TI  +  +K + +  +   LQL DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
           + +     +Y  D +  ++VY V S +SF        ++        + I+LVGNK DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            +R +S EEG+A +   N  F+E+SAK           +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     TI          LE R  +L +WD  GQ
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A RQ   +  + +   +  ER +   +++  NK DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 128 EKRQVSI---EEGEAKSRELNVMFIETSAKAGFNIK 160
                +           R  +      SA  G ++ 
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 152

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 80.8 bits (198), Expect = 3e-20
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +   +    T G +  S       +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQS----QGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
            + R    SY  ++ + + V D A R+ F  T + + E+  E + S V +++  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 128 EKRQVSI---EEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
                S           R+        SA  G  ++   + +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 3/158 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++   F   +               +++ ++     L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVE 128
             R L    +      V+VY V  + SF   S+  +   R  +  DV I+LVGNK+DLV 
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
            R+VS++EG A +   +  FIETSA    N++     +
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 157

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 79.0 bits (193), Expect = 1e-19
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 8/162 (4%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G +       +    V ++LWD  GQ
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQ 57

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL- 126
            RFRS+   Y R  S  V + D A ++    +   +  +  + +   + ++++GNK DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
             ++++++  +   +  ++  +     S K   NI +    L
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 159

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.0 bits (188), Expect = 6e-19
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 16/161 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+FLG  + GKT+++     D+      AT+   +   +  L    ++   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEK 129
            R L   Y  + +  V + D A  + F      +D +       DV  V++GNK D    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 130 RQVS----------IEEGEAKSRELNVMFIETSAKAGFNIK 160
              +              +    +  V     S        
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 157

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (188), Expect = 8e-19
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            Y++V +G+Q VGK+++   F       ++    +G D   +T+ ++  +  + L D   
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK--WIDEVRTERGSDVIIVLVGNKTD 125
            +     +  +      A ++    + ++    +    I   R  +  D+ I+LVGNK+D
Sbjct: 63  NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 122

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166
           LV  R+VS+ EG A +   +  FIETSA    N+K     +
Sbjct: 123 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 163

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 7/164 (4%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ + +L  LGD   GK+S+I RF+   +          +   K M ++ +T  + + + 
Sbjct: 2   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREE 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG    +     +         + D  S Q+       +  +R E    + + LVG +  
Sbjct: 60  AGAPDAK--FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 117

Query: 126 LVEK--RQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCHTL 166
           +     R V      A   ++    + ET A  G N+      +
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 161

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 5e-17
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T               +  + ++ Q+WD  G 
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIGFNVETVTYKNLKFQVWDLGGL 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
              R     Y  ++   + V D   R     +   +  +  E      I+V+  NK D+ 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 128 EKRQVS---IEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           +    S      G    ++      +TSA  G  +      L   +
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.5 bits (174), Expect = 1e-16
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LG    GK++ + +    +  +    T GI         E + V  ++ D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQR 55

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-----------VRTERGSDVIIV 118
             R          +  + +   +     L   +  +            V     S+V I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L  NKTDL+E++   +   +               +
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ 151

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.7 bits (172), Expect = 3e-16
 Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 43/189 (22%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++ I +            T GI      +         ++ D  GQ
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIF----RMVDVGGQ 55

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQS-----------FLNTSKWIDEVRTERGSDVII 117
              R        + +  + +  ++                 + + +   +      +  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 118 VLVGNKTDLVEKRQVSIEEGE--------------------------AKSRELNVMFIET 151
           +L  NK DL+E++ +     +                              +  +    T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 152 SAKAGFNIK 160
            A    NI+
Sbjct: 176 CATDTENIR 184

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.8 bits (170), Expect = 9e-16
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A ++L+ LG    GK++I+ +            T GI         +   V   ++D  G
Sbjct: 5   ATHRLLLLGAGESGKSTIVKQM----RILHVVLTSGIFETK----FQVDKVNFHMFDVGG 56

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-----------DEVRTERGSDVI 116
           Q   R        D +  + V   +S    +                           + 
Sbjct: 57  QRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 116

Query: 117 IVLVGNKTDLVEKRQVSIEE 136
           ++L  NK DL+ ++ ++ + 
Sbjct: 117 VILFLNKQDLLAEKVLAGKS 136

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 68.6 bits (166), Expect = 1e-15
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+                +  L    +    +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGH 67

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
            + R +  +Y+   +  V + D A  +  L + + +D  +  E  ++V I+++GNK D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 128 EKRQVS---------------IEEGEAKSRELNVMFIETSAKAGFNIK 160
           E                          +     +     S        
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 175

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.8 bits (159), Expect = 2e-14
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 20/157 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++I+ +              GI       +   + +  +++D  GQ
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQ 52

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-----------WIDEVRTERGSDVII 117
              R          +  +    ++     L   +           +      +  +D  I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 118 VLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           +L  NK DL E++                   E +A 
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA 149

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (150), Expect = 5e-13
 Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 13/163 (7%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++F+G    GKT +  R +  ++ +T   +I        +          +     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK----WIDEVRTERGSDVIIVLVGNKTDL 126
              L+  +   +   V V D A+ Q  +         +        +   +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 127 VEKRQVSIEEGE--------AKSRELNVMFIETSAKAGFNIKL 161
              +   + + +          +R      +++S+ A   +  
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGK 163

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  ++  G Q+ GKTS++T    D    T  +             +     + L D  G 
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE------PLSAADYDGSGVTLVDFPGH 56

Query: 69  ERFRSLIPSYIRDSSVA-----VVVYDVASRQSFLNTSKWIDEVRTE----RGSDVIIVL 119
            + R  +  Y++  +        +V      +    T++++ ++ +       + + I++
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGFNIK 160
             NK++L   R  S  + +A   E+          +  +E         +
Sbjct: 117 ACNKSELFTARPPSKIK-DALESEIQKVIERRKKSLNEVERKINEEDYAE 165

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 13  VFLGDQSVGKTSIITRF------------------MYDKFDNTYQATIGIDFLSKTMYLE 54
           +F G  +VGK+++I R                     +  ++      G  F+       
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 55  DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD 114
              ++ ++            +   + D   A  +     ++  +       +   E    
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 115 VIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
            I+    NK D ++  Q  I    E+ E    E++ +FI  SAK G NI+   + +  +I
Sbjct: 124 TIV--AVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 1/150 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V  G  + GK+S++      +         G        ++    + L + DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
               +     + +   +            T+    +        +  +       +V  +
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
                E    S       I  SA+ G  + 
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVD 151

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQ 68
            +   G+   GK+S I        +    A  G+  ++     Y       +  WD  G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 69  ERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
                   +Y+             +++ +   N       +      +   V    K D 
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS-MMKKEFYFVR--TKVDS 174

Query: 127 VEKRQ 131
               +
Sbjct: 175 DITNE 179

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 19/162 (11%), Positives = 44/162 (27%), Gaps = 10/162 (6%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             ++ F G  + GK+S +      K       T G   L     + D    + L      
Sbjct: 16  GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 75

Query: 69  ERFRSLIPSY------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGN 122
           E    +   +        +   ++    V               +     S++ ++++  
Sbjct: 76  EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLT 135

Query: 123 KTDLVEKRQVSIEEGEAKSREL----NVMFIETSAKAGFNIK 160
           K D +       +    +   L    +V     S+     + 
Sbjct: 136 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVD 177

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 11/165 (6%)

Query: 14  FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----E 69
            +G  + GK+S++                 +   +  +       R  L D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEGAS 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI----DEVRTERGSDVIIVLVGNKTD 125
             + L   ++R  +   V+  V         +                    ++  NK D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170
           L+E+    ++          +  +  SA  G  +      L++L+
Sbjct: 125 LLEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALV 167

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72
             +G  +VGK++++   +  K                   L +   ++   DT G  +  
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67

Query: 73  SLIPSYIR------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             +  ++        + V  VV+ V  R       + +          V I+LVGNK D 
Sbjct: 68  DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +  + +++       E     +  SA     + 
Sbjct: 128 AKYPEEAMKAYHELLPEAEPRML--SALDERQVA 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.98
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.98
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.82
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.81
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.77
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.74
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.72
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.61
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.46
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.44
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.42
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.21
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.2
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.19
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.05
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.02
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.75
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.55
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.47
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.44
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.38
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.34
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.27
d1okkd2	207	GTPase domain of the signal recognition particle r	98.23
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.21
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.21
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.21
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.03
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.01
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.93
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.89
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.87
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.85
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.84
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.81
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.78
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.76
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.75
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.72
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.72
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.72
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.71
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.68
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.68
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.67
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.65
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.64
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.63
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.55
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.54
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.52
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.51
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.51
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.48
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.48
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.47
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.47
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.46
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.46
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.45
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.45
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.45
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.43
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.43
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.4
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.39
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.39
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.36
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.36
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.35
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.35
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.35
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.33
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.32
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.31
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.3
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.26
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.25
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.24
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.24
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.24
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.23
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.2
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.19
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.17
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.17
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.16
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.15
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.15
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.12
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.11
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.09
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.09
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.05
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.04
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.03
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.99
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.99
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.96
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.96
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.93
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.91
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.88
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.86
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.85
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.81
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.77
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.71
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.71
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.71
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.68
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.66
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.63
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.61
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.57
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.44
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.42
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.34
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.33
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.31
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.3
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.27
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.22
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.18
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.17
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.13
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.05
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.03
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.0
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.0
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.99
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.99
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.92
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.89
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.85
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.84
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.76
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.74
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.72
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.66
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.54
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.53
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.42
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.41
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.41
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.36
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.33
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.29
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.28
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.27
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.22
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.2
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.16
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.15
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.06
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.01
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.82
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.79
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.61
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.47
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.4
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.32
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.27
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.07
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.96
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.4
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.3
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.98
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.28
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.46
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.29
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.0
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.47
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	90.35
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.32
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.63
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.46
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.17
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.98
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.95
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.57
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.19
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.88
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.32
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.81
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.51
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.24
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.19
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.79
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.77
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.76
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.58
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.29
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.97
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.62
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	83.35
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.89
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	82.23
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	81.73

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-40  Score=220.46  Aligned_cols=162  Identities=36%  Similarity=0.614  Sum_probs=153.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ++||+++|++|+|||||+++|+.+.+...+.++.+.+........++..+.+.+||++|++++..++..+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999998889999999899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++++.+..|+..+.... .++|+++|+||+|+.+++++...++++++++++++++++||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999988766 47999999999999888899999999999999999999999999999999999998


Q ss_pred             HHh
Q 030524          169 LIT  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.1e-40  Score=219.01  Aligned_cols=164  Identities=37%  Similarity=0.671  Sum_probs=154.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      -+||+++|++|+|||||+++|+++.+.+.+.++.+.+.........+..+.+.+||+||++++..++..+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999998888899999899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||+++++++..+..|+..+......+.|+++++||+|+.+.+.+..++++.+++++++++++|||++|.|++++|++|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            99999999999999998888777788999999999999888889999999999999999999999999999999999999


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+.+
T Consensus       165 ~i~e  168 (169)
T d3raba_         165 VICE  168 (169)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            8865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-40  Score=219.32  Aligned_cols=164  Identities=38%  Similarity=0.656  Sum_probs=148.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+++++.+.+.+.+.++.+.+........++..+.+.+||++|++++..++..+++++|++|+|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            58999999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++|+.+..|+..+........|+++++||+|+...+++..++++.+++++++++++|||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999888777778999999999999888899999999999999999999999999999999999999


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+..
T Consensus       163 ~i~~  166 (167)
T d1z08a1         163 RMIE  166 (167)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=218.27  Aligned_cols=165  Identities=39%  Similarity=0.645  Sum_probs=155.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+++.+||++|++++..++..+++++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            48999999999999999999999998888899998899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++.+++.+..|+..+........|+++++||+|+.+.+++...+++.+++.+++++++|||++|.||+++|.+|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            99999999999999999998887788999999999999888888999999999999999999999999999999999998


Q ss_pred             HHhhh
Q 030524          169 LITVC  173 (175)
Q Consensus       169 ~~~~~  173 (175)
                      .+...
T Consensus       165 ~l~~~  169 (171)
T d2ew1a1         165 RLISE  169 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-39  Score=216.12  Aligned_cols=164  Identities=36%  Similarity=0.672  Sum_probs=156.2

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ++.+||+++|.+|||||||+++|+.+.+.+++.++...+........++....+.+||++|++++..++..++.++|++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            56799999999999999999999999999999999988888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      +|||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+...++++++..++++|++|||++|.||+++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999999888888899999999999998888999999999999999999999999999999999999


Q ss_pred             HHHH
Q 030524          167 NSLI  170 (175)
Q Consensus       167 ~~~~  170 (175)
                      ++.+
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=221.19  Aligned_cols=171  Identities=26%  Similarity=0.380  Sum_probs=152.7

Q ss_pred             CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 030524            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (175)
Q Consensus         1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (175)
                      |++.+....+||+++|++|||||||+++|+.+.+..++.+|.+ +........++..+.+.+||++|++.+...+..++.
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            7788888899999999999999999999999998888888876 556677778888999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcC-Ce
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VM  147 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~-~~  147 (175)
                      ++|++++|||++++++|+....|+........++.|+++|+||+|+.+            .+.+..+++.+++++++ ++
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence            999999999999999999877666666666667899999999999864            46778899999999998 69


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          148 FIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       148 ~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      |++|||++|.|++++|+.+++++..
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999999988753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-39  Score=217.44  Aligned_cols=168  Identities=31%  Similarity=0.459  Sum_probs=153.6

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +..+.+||+++|++|||||||+++++.+.+..++.++.. +.....+.+++..+.+.+||++|++++...+..+++++|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            445679999999999999999999999998888777754 6667788889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      +|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.....+++.++..++++|++|||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            9999999999999999999999877654 789999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      ..|++.+...
T Consensus       161 ~~l~~~i~k~  170 (173)
T d2fn4a1         161 EQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-39  Score=215.64  Aligned_cols=162  Identities=29%  Similarity=0.379  Sum_probs=134.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|||||||++++.+..... ..++. .+.+...+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            799999999999999999999876433 23333 3555667788999999999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      |++++++++.+..|+..+..... ..+|+++|+||+|+.+.+++...++++++..+++++++|||++|.|++++|..|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999999987764 67899999999999888899999999999999999999999999999999999998


Q ss_pred             HHhhh
Q 030524          169 LITVC  173 (175)
Q Consensus       169 ~~~~~  173 (175)
                      .+..+
T Consensus       160 ~i~~~  164 (168)
T d2gjsa1         160 QIRLR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-39  Score=214.36  Aligned_cols=165  Identities=32%  Similarity=0.505  Sum_probs=151.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|+|||||+++++++.+.+.+.++.+ +.+...+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC-EEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCccee-eccccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            3569999999999999999999999988888888876 445666788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC-CHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NIKLCCH  164 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~f~  164 (175)
                      +|||++++++|+.+..|+..+.+... .++|+++++||+|+.+.+++..++++++++++++++++|||+++. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            99999999999999999999887754 689999999999998888999999999999999999999999886 9999999


Q ss_pred             HHHHHHhh
Q 030524          165 TLNSLITV  172 (175)
Q Consensus       165 ~l~~~~~~  172 (175)
                      .|++.+..
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=214.64  Aligned_cols=161  Identities=79%  Similarity=1.197  Sum_probs=153.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|||||||+++++.+.+..++.++.+.+........++..+.+.+||++|++.+...+..++.++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999999988888888888899999999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL  169 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~  169 (175)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+.++...++++++++++++++++|||++|+|++++|.+|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999998887899999999999998888899999999999999999999999999999999999887


Q ss_pred             H
Q 030524          170 I  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-39  Score=214.03  Aligned_cols=162  Identities=35%  Similarity=0.652  Sum_probs=153.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+++++++.+..++.++.+.+........++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999998888888888888999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++++.+..|+..+........|+++++||+|+.+......++++.+++++++++++|||++|.||+++|.++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998888889999999999999888888899999999999999999999999999999999988


Q ss_pred             HH
Q 030524          169 LI  170 (175)
Q Consensus       169 ~~  170 (175)
                      .+
T Consensus       164 ~i  165 (166)
T d1z0fa1         164 KI  165 (166)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-39  Score=215.05  Aligned_cols=163  Identities=32%  Similarity=0.423  Sum_probs=150.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.+||+++|++|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+||++|.+.+..++..++.++|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            468999999999999999999999988888888887654 5677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++++|+.+..|+..+....+ .++|+++++||+|+...+++..+++++++++++++|++|||++|.|++++|..|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999987765 689999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHh
Q 030524          167 NSLIT  171 (175)
Q Consensus       167 ~~~~~  171 (175)
                      ++.+.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88774

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=4.9e-39  Score=214.97  Aligned_cols=164  Identities=32%  Similarity=0.550  Sum_probs=148.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .-+||+++|++|||||||+++++.+.+..++.+|.+.++ ...+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            357999999999999999999999998888888887554 5667789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++++++.+..|+..+..... .++|+++|+||+|+.+.+++..++++.+++++++++++|||++|.|++++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999987754 689999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=213.60  Aligned_cols=165  Identities=35%  Similarity=0.625  Sum_probs=155.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|||||||+++++.+.+.+.+.++.+.+.....+..++....+.+||++|++++..++..++.++|++|+|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            48999999999999999999999998889899988888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||+++++++..+..|+..+......++|+++++||+|+....+.....+..++..+++++++|||++|.|++++|.++.+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            99999999999999999999888889999999999999888888899999999999999999999999999999999999


Q ss_pred             HHhhh
Q 030524          169 LITVC  173 (175)
Q Consensus       169 ~~~~~  173 (175)
                      ++..+
T Consensus       165 ~i~~~  169 (174)
T d2bmea1         165 KILNK  169 (174)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-39  Score=216.11  Aligned_cols=164  Identities=29%  Similarity=0.442  Sum_probs=148.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.+||+++|++|+|||||+++++.+.+.+.+.+|.+. .+......++..+.+.+||++|++.+...+..++.++|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED-TYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE-EEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceee-ccccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            4689999999999999999999999988888888874 445566788999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      |||++++++++.+..|+..+....+  .++|+++|+||+|+.+.+++..++++++++.+++++++|||++|.|++++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999988876544  67999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030524          166 LNSLITV  172 (175)
Q Consensus       166 l~~~~~~  172 (175)
                      |++.+..
T Consensus       160 l~~~~~~  166 (171)
T d2erxa1         160 LLNLEKR  166 (171)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHHH
Confidence            9987654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=212.63  Aligned_cols=166  Identities=37%  Similarity=0.688  Sum_probs=151.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      -+||+++|++|+|||||+++++++.+.+.+.++.+.+.........+....+.+||++|++.+..++..++.++|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            38999999999999999999999998888888888888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++|+.+..|+..+......++|+++++||+|+...+....+++..+++++++++++|||++|.|++++|..+++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999999998887789999999999999888888999999999999999999999999999999999999


Q ss_pred             HHhhhh
Q 030524          169 LITVCI  174 (175)
Q Consensus       169 ~~~~~~  174 (175)
                      .+..++
T Consensus       163 ~i~~~~  168 (173)
T d2a5ja1         163 EIYRKI  168 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=212.30  Aligned_cols=164  Identities=38%  Similarity=0.743  Sum_probs=155.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+++|+.+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++++|+++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            58999999999999999999999999999999999898888988999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++++.+..|+..+.....++.|+++++||+|+.+++++..++++.++..+++++++|||++|.|++++|..|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998887789999999999999888899999999999999999999999999999999999998


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+..
T Consensus       166 ~i~~  169 (170)
T d1r2qa_         166 KLPK  169 (170)
T ss_dssp             TSCC
T ss_pred             HHhh
Confidence            7754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-38  Score=213.60  Aligned_cols=165  Identities=41%  Similarity=0.707  Sum_probs=127.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      -+||+++|.+|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            48999999999999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++.++..+..|+..+......+.|+++++||.|+...+.....++..++...++++++|||++|+|+.++|.+|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998887789999999999999888888888899999999999999999999999999999999


Q ss_pred             HHhhh
Q 030524          169 LITVC  173 (175)
Q Consensus       169 ~~~~~  173 (175)
                      .+.++
T Consensus       166 ~i~~k  170 (173)
T d2fu5c1         166 DIKAK  170 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=212.68  Aligned_cols=163  Identities=33%  Similarity=0.518  Sum_probs=150.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ++.+||+++|++|||||||+++++.+.+...+.++.+ +.+.....+++..+.+.+||++|++.+...+..+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            3679999999999999999999999998888888776 666777888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT  165 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~  165 (175)
                      +|||++++++|..+..|+..+..... +++|+++|+||+|+.+.+.....+++.+++++++++++|||++|.|++++|..
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            99999999999999999998887654 68999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHH
Q 030524          166 LNSLI  170 (175)
Q Consensus       166 l~~~~  170 (175)
                      +++.+
T Consensus       160 i~~~i  164 (167)
T d1kaoa_         160 IVRQM  164 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-38  Score=210.00  Aligned_cols=164  Identities=35%  Similarity=0.677  Sum_probs=151.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      -+||+++|++|||||||+++++++.+...+.++.+.+.....+..++..+.+.+||++|+++|...+..+++++|++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            48999999999999999999999998888888888888888889999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++|..+..|+..+.....+++|+++|+||+|+.+.+.........+...+++++++|||++|+|++++|.++++
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~  163 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT  163 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999999888888999999999999887788888888999999999999999999999999999998


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+..
T Consensus       164 ~i~~  167 (175)
T d2f9la1         164 EIYR  167 (175)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-37  Score=212.35  Aligned_cols=166  Identities=39%  Similarity=0.643  Sum_probs=156.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .-+||+|+|++|||||||+++++.+.+...+.++.+.+.....+.+++..+.+.+||++|++++..++..+++++|++|+
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            34899999999999999999999999889999999988888899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||+++++++..+..|+..+......+.|+++++||+|+.+.......+...++...+++++++||++|.|++++|.+++
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHH
Confidence            99999999999999999988877778999999999999998899999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 030524          168 SLITVC  173 (175)
Q Consensus       168 ~~~~~~  173 (175)
                      +.+...
T Consensus       165 ~~i~~~  170 (194)
T d2bcgy1         165 RQIKES  170 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-38  Score=209.93  Aligned_cols=164  Identities=35%  Similarity=0.589  Sum_probs=147.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .++||+++|++|||||||+++++.+.+...+.++.+ +.....+.+++..+.+.+||++|.+++...+..++.++|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            458999999999999999999999988888888776 6677788889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||.+++++|+.+..|+..+..... ...|+++++||+|+.+.+.+...+++.+++++++++++|||++|.|++++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999998877654 679999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      ++.+..
T Consensus       163 ~~~i~k  168 (171)
T d2erya1         163 VRVIRK  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-38  Score=209.82  Aligned_cols=164  Identities=30%  Similarity=0.500  Sum_probs=148.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ++.+||+++|++|||||||+++++.+.+...+.++.+. .+...+..++..+.+.+||++|++.+...+..+++++|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEE-EEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc-ccceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            36799999999999999999999999998888888874 44566678888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHHHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~f~  164 (175)
                      +|||++++++|+.+..|+..+..... +++|+++|+||+|+........+++..+++++ ++++++|||++|.|++++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            99999999999999999999887654 68999999999999888889999999999875 68999999999999999999


Q ss_pred             HHHHHHh
Q 030524          165 TLNSLIT  171 (175)
Q Consensus       165 ~l~~~~~  171 (175)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=209.63  Aligned_cols=162  Identities=28%  Similarity=0.401  Sum_probs=145.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      +.||+++|++|+|||||+++++.+.+.+.+.++.+ +........++..+.+.+||++|++.+...+..++.++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999998888888876 56667777889999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA  155 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (175)
                      ||++++++|+.+..|+........+++|+++++||+|+.+            .+.+...+++.++++++. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999988877776666667899999999999853            256778899999999985 899999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 030524          156 GFNIKLCCHTLNSLIT  171 (175)
Q Consensus       156 ~~~v~~~f~~l~~~~~  171 (175)
                      |.|++++|+.+.+.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-39  Score=214.54  Aligned_cols=161  Identities=28%  Similarity=0.537  Sum_probs=143.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+++++.+.+...+.+|.+.++.......++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999998899999999999999988999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++++|+.+..|+..+.... .++|+++|+||+|+...+..  .+...++...++++++|||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988765 58999999999998665443  3556788899999999999999999999999999


Q ss_pred             HHhh
Q 030524          169 LITV  172 (175)
Q Consensus       169 ~~~~  172 (175)
                      .+..
T Consensus       160 ~l~~  163 (170)
T d1i2ma_         160 KLIG  163 (170)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            8864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-37  Score=207.80  Aligned_cols=164  Identities=43%  Similarity=0.757  Sum_probs=152.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++.++|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999999988888899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC---CCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE---KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      |||++++.+++.+..|+...........|+++++||+|+.+   .+++..++++++++.+++++++|||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999988888778899999999999854   467888999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 030524          165 TLNSLIT  171 (175)
Q Consensus       165 ~l~~~~~  171 (175)
                      .|++.+.
T Consensus       162 ~i~~~i~  168 (170)
T d1ek0a_         162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            9987653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=207.64  Aligned_cols=163  Identities=33%  Similarity=0.440  Sum_probs=144.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||+++++.+.+.+.+.+|.+.++ ......++..+.+.+||++|++.+. ....++.++|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccc-cccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            58999999999999999999999998889999987665 4455678889999999999998764 556688999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC-CHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NIKLCCHTL  166 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~f~~l  166 (175)
                      ||+++++++..+..|+........ .+.|+++|+||+|+.+.++++.+++++++++++++|++|||++|. +|+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999988776655444 689999999999998888999999999999999999999999998 599999999


Q ss_pred             HHHHhhh
Q 030524          167 NSLITVC  173 (175)
Q Consensus       167 ~~~~~~~  173 (175)
                      ++.+..+
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-38  Score=213.65  Aligned_cols=165  Identities=39%  Similarity=0.644  Sum_probs=149.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC----------eEEEEEEEeCCCccccccccccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------RTVRLQLWDTAGQERFRSLIPSY   78 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~~~~~   78 (175)
                      .+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++          ..+.+.+||++|++++..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            48999999999999999999999998888888888777776665433          34689999999999999999999


Q ss_pred             ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (175)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (175)
                      ++++|++|+|||++++.+++.+..|+..+..+.. ...|+++|+||.|+.+.+++...+++++++.+++++++|||++|+
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            9999999999999999999999999988776544 678899999999999889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 030524          158 NIKLCCHTLNSLITVC  173 (175)
Q Consensus       158 ~v~~~f~~l~~~~~~~  173 (175)
                      |++++|.+|.+.+..+
T Consensus       165 ~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         165 NVEKAVETLLDLIMKR  180 (186)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-37  Score=205.11  Aligned_cols=163  Identities=39%  Similarity=0.702  Sum_probs=143.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCc-ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      .+||+++|++|+|||||+++++.+.+... +.++.+.+.....+..++..+.+.+|||+|++.+..++..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            58999999999999999999999886544 45566778888888999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN  167 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~  167 (175)
                      |||++++++++.+..|+...........|+++++||.|+.+...+..+++..+++.+++++++|||++|.|++++|.+|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999998888878899999999999988889999999999999999999999999999999999999


Q ss_pred             HHHh
Q 030524          168 SLIT  171 (175)
Q Consensus       168 ~~~~  171 (175)
                      +.+.
T Consensus       166 ~~i~  169 (170)
T d2g6ba1         166 KELK  169 (170)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            8864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-37  Score=205.63  Aligned_cols=165  Identities=41%  Similarity=0.728  Sum_probs=147.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      -+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS  168 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~  168 (175)
                      ||++++.+++.+..|+...........|++++++|.|+ ..+....+++++++.++++++++|||++|+|+.++|++|.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhh-hhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            99999999999999999998888888999999999997 45667788999999999999999999999999999999999


Q ss_pred             HHhhhh
Q 030524          169 LITVCI  174 (175)
Q Consensus       169 ~~~~~~  174 (175)
                      .+..++
T Consensus       161 ~i~~k~  166 (166)
T d1g16a_         161 LIQEKI  166 (166)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            988763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-37  Score=208.74  Aligned_cols=164  Identities=28%  Similarity=0.370  Sum_probs=146.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.+||+++|++|||||||+++|+.+.+..++.++.+ +........++..+.+.+||++|+++|...+..++.++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            468999999999999999999999998888888887 5566677788899999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcC-CeEEEeccC
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSAK  154 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~~  154 (175)
                      |||+++++||+.+..|+.........+.|+++++||+|+.+            .+.+..+++++++.+++ ++|++|||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999999999998876766666667899999999999853            34678899999999875 699999999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 030524          155 AGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       155 ~~~~v~~~f~~l~~~~~~  172 (175)
                      +|.||+++|+.+.+.+..
T Consensus       161 ~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTS
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            999999999999887654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-37  Score=204.37  Aligned_cols=163  Identities=29%  Similarity=0.503  Sum_probs=147.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.+||+++|++|||||||+++|+++.+...+.++.+..+ .......+..+.+.+||++|++.+...+..++.+++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceee-ccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            458999999999999999999999998888888887554 4456678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++.+|+.+..|+..+..... +++|+++++||+|+. .+....++++++++.+++++++|||++|+|++++|.++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999988765 679999999999985 56677889999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      ++.+..
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-37  Score=204.89  Aligned_cols=163  Identities=28%  Similarity=0.437  Sum_probs=141.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCC---cccccccccccccCCcE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG---QERFRSLIPSYIRDSSV   84 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d~   84 (175)
                      .+||+++|++|+|||||++++++.... ....++.+.+.+...+.+++..+.+.+||++|   ++++  ++..+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            589999999999999999999987654 44556677788888888999999999999764   4544  56778999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      +|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+++..++++.++..++++|++|||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            9999999999999999999998877644 689999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      ..|++.+..+
T Consensus       161 ~~l~~~i~~r  170 (172)
T d2g3ya1         161 EGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999988653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-37  Score=206.40  Aligned_cols=165  Identities=27%  Similarity=0.408  Sum_probs=145.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ++.+||+++|++|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+...+..++.++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            5679999999999999999999999998888888886 566677788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcC-CeEEEecc
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSA  153 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~  153 (175)
                      +|||++++++|+.+..|+.........++|+++|+||+|+.+            .......++..+++.++ ++|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999987755555555567899999999999753            24566778889999888 69999999


Q ss_pred             CCCCCHHHHHHHHHHHHhh
Q 030524          154 KAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++|.||+++|..+++.++.
T Consensus       162 k~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHHHHHHHHHcC
Confidence            9999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=202.06  Aligned_cols=164  Identities=40%  Similarity=0.689  Sum_probs=151.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      ..+||+++|++|+|||||++++.++.+..++.++.+.......+..++..+.+.+||++|++++..++..+++++|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL  166 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l  166 (175)
                      |||++++.+++.+..|+.++..... ...|+++++||.|. ..+++...+++.+++.++++++++||++|+|+.++|+++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeecccc-ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999877654 67899999999996 467788999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030524          167 NSLITV  172 (175)
Q Consensus       167 ~~~~~~  172 (175)
                      ++.+..
T Consensus       165 ~~~l~~  170 (177)
T d1x3sa1         165 VEKIIQ  170 (177)
T ss_dssp             HHHHHT
T ss_pred             HHHHcc
Confidence            988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-36  Score=200.16  Aligned_cols=158  Identities=35%  Similarity=0.611  Sum_probs=145.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCCcEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV   87 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   87 (175)
                      -+||+++|++|||||||+++++.+.+...+.++.+................+.+||++|...+.. .+..++.++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999988899988888888888999999999999999877655 56788999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC---CCCHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKLCC  163 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~f  163 (175)
                      |||++++++|+.+..|+..+..+.. +++|+++|+||+|+.+++++..++++++++++++++++|||++   ++||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            9999999999999999999988754 6899999999999988888999999999999999999999986   66999999


Q ss_pred             HHH
Q 030524          164 HTL  166 (175)
Q Consensus       164 ~~l  166 (175)
                      .+|
T Consensus       162 ~~l  164 (165)
T d1z06a1         162 MTL  164 (165)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            886

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=198.81  Aligned_cols=163  Identities=37%  Similarity=0.612  Sum_probs=145.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      -+||+++|++|||||||+++++.+.+.+.+.++.+..........++..+.+.+||++|..++...+..++..+|+++++
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~   85 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT   85 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEE
Confidence            37999999999999999999999998889999998888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCHHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~f  163 (175)
                      ||.+++.+++.+..|+..+.....    .++|+++|+||+|+. ++++...+++.++++.+ +++++|||++|.|++++|
T Consensus        86 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_          86 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988876542    579999999999985 46788899999998875 799999999999999999


Q ss_pred             HHHHHHHhh
Q 030524          164 HTLNSLITV  172 (175)
Q Consensus       164 ~~l~~~~~~  172 (175)
                      ++|++.+.+
T Consensus       165 ~~l~~~il~  173 (174)
T d1wmsa_         165 EEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-36  Score=202.54  Aligned_cols=163  Identities=24%  Similarity=0.403  Sum_probs=145.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ++||+++|++|||||||+++++.+.+..++.++.. +........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            58999999999999999999999999888888875 55566677888999999999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA  155 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (175)
                      ||+++++||+.+..|+.........+.|+++|+||+|+..            .+.+..++...++++++. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988877776666667999999999999853            466889999999999885 899999999


Q ss_pred             CC-CHHHHHHHHHHHHhh
Q 030524          156 GF-NIKLCCHTLNSLITV  172 (175)
Q Consensus       156 ~~-~v~~~f~~l~~~~~~  172 (175)
                      |. +++++|+.+.+.++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.7e-36  Score=201.83  Aligned_cols=163  Identities=39%  Similarity=0.653  Sum_probs=146.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|.+|||||||+++++++.+...+.++.+.+.........+..+.+.+||++|+..+...+..++..+|+++++|
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCCCHHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKLCCH  164 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~~f~  164 (175)
                      |.+++.+++.+..|+..+.....    .++|+++|+||+|+.+ ++....+...++. ..++++++|||++|.|+.++|.
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999998877643    4689999999999864 4566666666654 4578999999999999999999


Q ss_pred             HHHHHHhhh
Q 030524          165 TLNSLITVC  173 (175)
Q Consensus       165 ~l~~~~~~~  173 (175)
                      +|++.+..+
T Consensus       162 ~l~~~i~~~  170 (184)
T d1vg8a_         162 TIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999987765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.6e-36  Score=200.29  Aligned_cols=165  Identities=36%  Similarity=0.607  Sum_probs=131.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      -+||+++|++|||||||+++|+++.+.+.+.++.+........... .....+.+||++|++++...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4899999999999999999999998888888877766666655444 345678999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCC-CCCHHHHHHHHHhcC-CeEEEeccCCCCCHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKR-QVSIEEGEAKSRELN-VMFIETSAKAGFNIKL  161 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~  161 (175)
                      |||++++.+|+.+..|+.++.....    .++|+++++||+|+.+.+ .....++++++..++ +++++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999998876543    578999999999997654 467788899999986 7999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030524          162 CCHTLNSLITVC  173 (175)
Q Consensus       162 ~f~~l~~~~~~~  173 (175)
                      +|++|.+.+..+
T Consensus       162 ~f~~l~~~~l~~  173 (175)
T d1ky3a_         162 AFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-33  Score=186.60  Aligned_cols=160  Identities=21%  Similarity=0.356  Sum_probs=133.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      ...+||+++|++|||||||+++++++.+.. +.++.. +.+...+.+++..+.+.+||++|+..+     .+++++|++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            446999999999999999999999988654 344444 445677788999999999999998764     3788999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHh-cCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~  160 (175)
                      +|||++++++|+.+..|+..+.....   .++|+++|+||.|+.  ..+.+...+++.++.+ ++++|++|||++|.|++
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            99999999999999999988866542   678999999988864  4566778888888655 56899999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      ++|..+++.+...
T Consensus       156 ~~F~~l~~~i~~~  168 (175)
T d2bmja1         156 RVFQEVAQKVVTL  168 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=5.4e-34  Score=189.58  Aligned_cols=156  Identities=24%  Similarity=0.346  Sum_probs=129.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|+|||||++++..+.+...+.+|.+.++...  ..++  +.+.+||+||++.+...+..++.++|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~--~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI--TKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE--EETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeee--eeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            58999999999999999999999998888888887665433  3443  6799999999999999999999999999999


Q ss_pred             EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHHHH
Q 030524           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKLC  162 (175)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~~  162 (175)
                      ||+++++++++...|+..+..... +++|+++++||.|+.+..  ...+..+.     +...+++++++||++|+|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            999999999999988887766543 789999999999985432  22322222     2344568999999999999999


Q ss_pred             HHHHHHHH
Q 030524          163 CHTLNSLI  170 (175)
Q Consensus       163 f~~l~~~~  170 (175)
                      |++|++.+
T Consensus       156 ~~~l~~~~  163 (164)
T d1zd9a1         156 LQWLIQHS  163 (164)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHcc
Confidence            99998864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=4e-33  Score=185.45  Aligned_cols=158  Identities=23%  Similarity=0.331  Sum_probs=125.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.+||+++|++|||||||+++|.+... ....++.+....  .+..++  +.+.+||++|++.++..+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK--TLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE--EEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee--eccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            368999999999999999999988764 345566654433  333443  679999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      +||+++..++.....++....... ..+.|+++++||+|+.+....  .+....     +...++++++|||++|+|+.+
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            999999999999877776665443 378999999999998654433  232222     122346899999999999999


Q ss_pred             HHHHHHHHHhh
Q 030524          162 CCHTLNSLITV  172 (175)
Q Consensus       162 ~f~~l~~~~~~  172 (175)
                      +|++|.+.+.+
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=3.9e-33  Score=187.31  Aligned_cols=159  Identities=22%  Similarity=0.359  Sum_probs=125.1

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      +..+.+||+++|++|||||||++++.++.+.. ..++.+.+.  ..+...+  +.+.+||++|++.+...+..++..+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~--~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNI--KSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEE--EEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeeeE--EEeccCC--eeEeEeeccccccchhHHHHHhhccce
Confidence            34567999999999999999999999877542 233333332  2333343  679999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHH-----HHHhcCCeEEEeccCCCCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~  158 (175)
                      +|+|||++++.++.+...|+..+..... .++|+++++||+|+.++..  .....+     .+...++++++|||++|+|
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            9999999999999999888877766544 6799999999999865432  222222     2334456899999999999


Q ss_pred             HHHHHHHHHHHH
Q 030524          159 IKLCCHTLNSLI  170 (175)
Q Consensus       159 v~~~f~~l~~~~  170 (175)
                      ++++|+||++.+
T Consensus       165 v~e~~~~l~~~i  176 (176)
T d1fzqa_         165 VQDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.98  E-value=3e-33  Score=188.94  Aligned_cols=162  Identities=23%  Similarity=0.338  Sum_probs=124.0

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (175)
                      ...+.+||+++|++|||||||++++...... ...++.+....  .....+  +.+.+||++|++.+...+..++.++|+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE--TLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEE--EEEETT--EEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEE--EEeeCC--EEEEEEecccccccchhHHhhhcccee
Confidence            3456799999999999999999999877643 33445443332  223333  679999999999999999999999999


Q ss_pred             EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHH-----HHHhcCCeEEEeccCCCCC
Q 030524           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFN  158 (175)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~  158 (175)
                      +++|||++++.++.+...|+........ .+.|+++++||+|+.+.  ....+..+     .+...++++++|||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            9999999999999999888877665443 67999999999998542  23333332     2344567899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030524          159 IKLCCHTLNSLITVC  173 (175)
Q Consensus       159 v~~~f~~l~~~~~~~  173 (175)
                      +.++|++|.+.+..+
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.98  E-value=2.7e-32  Score=182.80  Aligned_cols=158  Identities=23%  Similarity=0.351  Sum_probs=123.9

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (175)
                      +.+.+||+++|++|||||||+++++.+... ...++.+.....  ...  ..+.+.+||+||++.+...+..+++++|++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCE-EEEEETTEEEEE--EEE--TTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCC-CccceeeeeEEE--eec--cceeeEEecCCCcchhhhHHHhhhcccceE
Confidence            345799999999999999999999887643 334444443322  223  336789999999999999999999999999


Q ss_pred             EEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHH-----HHHhcCCeEEEeccCCCCCH
Q 030524           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v  159 (175)
                      |+|||+++++++..+..|+....... ..+.|+++++||+|+.+..  ...+...     .+...++.+++|||++|+|+
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv  161 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL  161 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc--cHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence            99999999999999988887776543 3689999999999985432  2223222     23344678999999999999


Q ss_pred             HHHHHHHHHHH
Q 030524          160 KLCCHTLNSLI  170 (175)
Q Consensus       160 ~~~f~~l~~~~  170 (175)
                      .++|++|.+.+
T Consensus       162 ~e~~~~l~~~~  172 (173)
T d1e0sa_         162 YEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=170.59  Aligned_cols=154  Identities=19%  Similarity=0.292  Sum_probs=123.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (175)
                      +||+++|++|||||||+++|.++.+.........     .....+...+.+.+||++|...+...+..++.++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999998876554333322     12223445578999999999999999999999999999999


Q ss_pred             ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHH-----HHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEG-----EAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      |+.++.++..+..|+.++..... ...|+++++||.|+....  ...+.     ..++...++++++|||++|+|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            99999999999888888876554 678999999999975432  22222     23444557799999999999999999


Q ss_pred             HHHHHHH
Q 030524          164 HTLNSLI  170 (175)
Q Consensus       164 ~~l~~~~  170 (175)
                      ++|.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=159.80  Aligned_cols=157  Identities=21%  Similarity=0.315  Sum_probs=116.5

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+.+||+++|.+|||||||++++.++.+... .++....  .......+  ..+.+||++|++.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-cccccee--EEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            4569999999999999999999998775432 2222221  22222333  57999999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHH
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~  160 (175)
                      +++|.++..+++....+......... .+.|+++++||+|+.....  ..+....     +...+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            99999999999887776665554433 7899999999999854332  2222222     23345689999999999999


Q ss_pred             HHHHHHHHHH
Q 030524          161 LCCHTLNSLI  170 (175)
Q Consensus       161 ~~f~~l~~~~  170 (175)
                      ++|++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=3.1e-26  Score=151.85  Aligned_cols=161  Identities=22%  Similarity=0.314  Sum_probs=122.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.+||+++|.+|||||||+++++++.+... .++.+  ........++  +.+.+||.+|.+.+...+..++...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            358999999999999999999999876543 23332  2223333344  578999999999999999999999999999


Q ss_pred             EEECCChhhHHhHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCC---HHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524           88 VYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nk~D~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f  163 (175)
                      ++|+.+..++.....++...... .....|+++++||.|+.+.....   ......++...++++++|||++|+|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            99999988888877765555443 33789999999999986533211   111222344556799999999999999999


Q ss_pred             HHHHHHHhhh
Q 030524          164 HTLNSLITVC  173 (175)
Q Consensus       164 ~~l~~~~~~~  173 (175)
                      ++|.+.+..+
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999987654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-25  Score=148.30  Aligned_cols=151  Identities=24%  Similarity=0.250  Sum_probs=116.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (175)
                      ||+++|++|+|||||+++++++.+. ...++.+....  .  .........+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--E--LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--E--ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE--E--eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999998754 34454443322  2  22233568999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH------------HhcCCeEEEeccCCCC
Q 030524           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS------------RELNVMFIETSAKAGF  157 (175)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~~~  157 (175)
                      .++..++.....|+........ .+.|+++++||.|+...  ....+.....            ...++++++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999999888877776655443 78999999999998542  2333332222            2234579999999999


Q ss_pred             CHHHHHHHHHH
Q 030524          158 NIKLCCHTLNS  168 (175)
Q Consensus       158 ~v~~~f~~l~~  168 (175)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7e-27  Score=159.19  Aligned_cols=159  Identities=17%  Similarity=0.134  Sum_probs=122.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.+||+++|..|||||||++++..+.+  .+.||.+++....    ......+.+||++|++.+...|..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPF----DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEEE----ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEEE----eccceeeeeccccccccccccccccccccceeeE
Confidence            468999999999999999999988765  3578888665432    2344679999999999999999999999999999


Q ss_pred             EEECCChh-----------hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------------CCCCHHHHHHH
Q 030524           88 VYDVASRQ-----------SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----------------RQVSIEEGEAK  140 (175)
Q Consensus        88 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~----------------~~~~~~~~~~~  140 (175)
                      +||+++..           .++....|...+......+.|+++++||.|+.+.                .+.+......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998754           3445666766666666689999999999997421                22233333333


Q ss_pred             HH----------hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          141 SR----------ELNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       141 ~~----------~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ..          ...+.++++||++|+|+.++|+.+.+.+..
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            22          123457899999999999999999888764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.1e-25  Score=151.03  Aligned_cols=156  Identities=18%  Similarity=0.118  Sum_probs=107.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYI   79 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   79 (175)
                      .-.|+|+|.+|||||||+|+|++..... ...+..+.+.........+  ..+.+|||||......        .....+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            3479999999999999999999875432 2223233333333444444  4689999999644332        223457


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCC
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN  158 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  158 (175)
                      .++|++++|+|++++...  ...++....+....+.|+++|+||+|+....   ....+.+....+ ..++++||++|.|
T Consensus        83 ~~ad~il~v~D~~~~~~~--~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~g  157 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTP--EDELVARALKPLVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQ  157 (178)
T ss_dssp             SSCSEEEEEEETTSCCCH--HHHHHHHHHGGGTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHH
T ss_pred             ccccceeeeechhhhhcc--cccchhhheeccccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCC
Confidence            899999999999876443  2333334444445679999999999985432   223344444455 4789999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030524          159 IKLCCHTLNSLIT  171 (175)
Q Consensus       159 v~~~f~~l~~~~~  171 (175)
                      +++++++|.+.+-
T Consensus       158 i~~L~~~i~~~lp  170 (178)
T d1wf3a1         158 VAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999988763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.6e-26  Score=156.79  Aligned_cols=156  Identities=17%  Similarity=0.209  Sum_probs=113.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (175)
                      +.+||+++|..|||||||+++|....++..+.       ....+..  ....+.+||++|++.+...+..++..++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~-------~~~~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGI-------VETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSE-------EEEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccE-------EEEEEEe--eeeeeeeeccccccccccchhhcccCCceeee
Confidence            46899999999999999999998765543322       1223333  34679999999999999999999999999999


Q ss_pred             EEECCChhhHH-----------hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---------------CCCCHHHHH---
Q 030524           88 VYDVASRQSFL-----------NTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---------------RQVSIEEGE---  138 (175)
Q Consensus        88 v~d~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~---------------~~~~~~~~~---  138 (175)
                      |||+++.+++.           ....|...+......+.|+++++||.|+...               ......+..   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            99999887652           2344444444445578999999999996321               111122211   


Q ss_pred             --HHHHh------cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          139 --AKSRE------LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       139 --~~~~~------~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                        .+...      .++.++++||++|.||+++|+.+.+.+..
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              11111      23467889999999999999998887754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=5.1e-26  Score=150.13  Aligned_cols=151  Identities=19%  Similarity=0.225  Sum_probs=109.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIR   80 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   80 (175)
                      +||+++|++|||||||+|+|++.... ....+..+.+.........+  ..+.++|++|..+...        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987644 23333333344444445555  4688999999543322        2334578


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      .+|++++++|..++.+++....|...+. ....++|+++|+||+|+.++...       +....+.+++++||++|+|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIA-RLPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHH-HSCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhh-hcccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            9999999999998877766665544443 34467999999999998543321       122335699999999999999


Q ss_pred             HHHHHHHHHH
Q 030524          161 LCCHTLNSLI  170 (175)
Q Consensus       161 ~~f~~l~~~~  170 (175)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.93  E-value=1.7e-24  Score=145.45  Aligned_cols=157  Identities=20%  Similarity=0.237  Sum_probs=113.0

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (175)
                      .+..||+++|++|||||||+++|++..+... .++.+.+..  .+..++  ..+.+||+.++..+...+..+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            4679999999999999999999998876533 333332322  233444  45789999999999999999999999999


Q ss_pred             EEEECCChhhHHhHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----------------hcCCeE
Q 030524           87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----------------ELNVMF  148 (175)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----------------~~~~~~  148 (175)
                      +++|.++...+.....++...... ...++|+++++||.|+..  .....+......                 ..++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            999999999888876655554443 337899999999999753  333444433332                 223569


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 030524          149 IETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       149 ~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ++|||++|+|++|+|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.2e-24  Score=146.14  Aligned_cols=158  Identities=15%  Similarity=0.113  Sum_probs=104.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc----cc---cccccccCCc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RS---LIPSYIRDSS   83 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~---~~~~~~~~~d   83 (175)
                      +|+++|.+|||||||+|+|++...........+.+.... .........+.+||+||....    ..   .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            589999999999999999998654322222222222222 222223346889999994321    11   1223467899


Q ss_pred             EEEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524           84 VAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus        84 ~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      ++++++|....  +.+.....|+....... .+.|+++++||+|+..+..  .....+.....+.+++.+||++|+|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998654  23333344433322211 3589999999999865432  3345555666788999999999999999


Q ss_pred             HHHHHHHHHhh
Q 030524          162 CCHTLNSLITV  172 (175)
Q Consensus       162 ~f~~l~~~~~~  172 (175)
                      +++.|.+.+..
T Consensus       159 L~~~i~~~l~~  169 (180)
T d1udxa2         159 LKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999887643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.7e-24  Score=147.46  Aligned_cols=157  Identities=19%  Similarity=0.209  Sum_probs=109.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      .+||+++|++|||||||++++.   ....+.||.++...  .+...  ...+.+||++|++.++..|..++.++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEeee--eeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   34566778876543  33344  46799999999999999999999999999999


Q ss_pred             EECCChh----------hHHhHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCC----------------CCCCHHHHHHHH
Q 030524           89 YDVASRQ----------SFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEK----------------RQVSIEEGEAKS  141 (175)
Q Consensus        89 ~d~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~iiv~nk~D~~~~----------------~~~~~~~~~~~~  141 (175)
                      ||.++..          .++....++..+... ...++|+++++||+|+.++                .......+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9999753          345555555555443 3378999999999997421                112233333332


Q ss_pred             Hh-----------cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          142 RE-----------LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       142 ~~-----------~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ..           ..+.++++||+++.+|+++|+.+.+.+..
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            22           13456789999999999999998877654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=3.5e-24  Score=143.65  Aligned_cols=160  Identities=18%  Similarity=0.176  Sum_probs=105.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccc-----ee--eEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-----GI--DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   79 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   79 (175)
                      .+.++|+++|++|+|||||+|+|++.........+.     +.  +........++  ..+.++|++|+.++...+...+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            467899999999999999999999743222111111     11  11111122233  4688999999999999888889


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHh----cCCeEEEecc
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE----LNVMFIETSA  153 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~s~  153 (175)
                      ..+|++++++|+.++...+.. ..+..+. .  .++|+++++||+|+.+.....  ....+.+...    .+.+++++||
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~-~~~~~~~-~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTG-EHMLILD-H--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH-HHHHHHH-H--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhccccccccccccccchhhh-hhhhhhh-h--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            999999999999876433222 2222222 2  478999999999986532211  1112222221    2358999999


Q ss_pred             CCCCCHHHHHHHHHHHHhh
Q 030524          154 KAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       154 ~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++|+|++++++.|.+.+-+
T Consensus       157 ~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCc
Confidence            9999999999999887654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.5e-23  Score=141.18  Aligned_cols=165  Identities=22%  Similarity=0.246  Sum_probs=106.4

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------   73 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------   73 (175)
                      .+....++||+++|++|+|||||+|+|++.... ....+..+..........++.  .+.++|+||......        
T Consensus         2 ~p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~   79 (186)
T d1mkya2           2 KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEK   79 (186)
T ss_dssp             CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CC
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCcccccccccccccc
Confidence            344456799999999999999999999986532 122222222333334455553  478889998543222        


Q ss_pred             ----cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh----c-
Q 030524           74 ----LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----L-  144 (175)
Q Consensus        74 ----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~----~-  144 (175)
                          .....+..+|++++|+|+..+..- ....++..+..   .+.|+++++||+|+....+...++..+...+    . 
T Consensus        80 ~~~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  155 (186)
T d1mkya2          80 YSNYRVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID  155 (186)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred             chhHHHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccC
Confidence                233346789999999999765332 22333333332   4689999999999875555454554433332    2 


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524          145 NVMFIETSAKAGFNIKLCCHTLNSLITVC  173 (175)
Q Consensus       145 ~~~~~~~s~~~~~~v~~~f~~l~~~~~~~  173 (175)
                      .++++++||++|.|++++++.|.+.+..-
T Consensus       156 ~~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         156 YSPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             TSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999997766554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.6e-23  Score=138.39  Aligned_cols=155  Identities=19%  Similarity=0.163  Sum_probs=97.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccccccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYIR   80 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~   80 (175)
                      +|+++|++|||||||+++|++..... ...+..+............  ..+.+||++|...         +.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            68999999999999999999865431 1122222222223333333  5689999999321         1223344567


Q ss_pred             CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      .+|+++++.+.+++.... ...++..+..   .++|+++|+||+|+.++.  ..+...++.+.....++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~-~~~~~~~l~~---~~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKE-DESLADFLRK---STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHH-HHHHHHHHHH---HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeeccccccccc-cccccccccc---ccccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            899999999987654332 2334444443   258999999999985422  1222233333334577999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030524          161 LCCHTLNSLITVC  173 (175)
Q Consensus       161 ~~f~~l~~~~~~~  173 (175)
                      +++++|.+.+.++
T Consensus       154 ~L~~~i~~~l~e~  166 (171)
T d1mkya1         154 TMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999987654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.1e-23  Score=137.28  Aligned_cols=149  Identities=20%  Similarity=0.242  Sum_probs=100.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI   79 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   79 (175)
                      +||+++|.+|+|||||+|+|++.... ....+..+...........+  ..+.+||+||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999986533 23333333334444455555  458899999942111         1112235


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  159 (175)
                      .++|++++|+|++++...+...-+. .+     ...++++++||.|+.+..  ...+..... ..+.+++++||++|+|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~~~-~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEKI--NEEEIKNKL-GTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCCC--CHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccchh--hhHHHHHHh-CCCCcEEEEECCCCCCH
Confidence            7899999999999886654433221 11     357889999999986533  333333222 24568999999999999


Q ss_pred             HHHHHHHHHH
Q 030524          160 KLCCHTLNSL  169 (175)
Q Consensus       160 ~~~f~~l~~~  169 (175)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=2.3e-23  Score=140.03  Aligned_cols=150  Identities=21%  Similarity=0.268  Sum_probs=95.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------------ccccc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------------FRSLI   75 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------~~~~~   75 (175)
                      .|+++|+||+|||||+|+|++........+..+.+.  ......+    +.++|+||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998765433333222222  2222333    67899999421               11123


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHH----------HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTS----------KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN  145 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~  145 (175)
                      ...++++|++++|+|...+.......          ..++.+. .  .++|+++|+||+|+.+..+.   ....+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~--~~~p~iiv~NK~D~~~~~~~---~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-E--LDIPTIVAVNKLDKIKNVQE---VINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-H--TTCCEEEEEECGGGCSCHHH---HHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH-H--cCCCEEEEEeeeehhhhHHH---HHHHHHHHhc
Confidence            34467899999999987543222111          1112221 1  47999999999997543221   1122222222


Q ss_pred             -------CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          146 -------VMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       146 -------~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                             ..++++||++|+|++++++.|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   258899999999999999999987754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.2e-22  Score=136.89  Aligned_cols=118  Identities=22%  Similarity=0.331  Sum_probs=88.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCCcEEEEEE
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVVVY   89 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~   89 (175)
                      +|+++|++|||||||+++|+++.+... .++.+.+...... .++....+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999999876554 3455444433322 24456789999999998875 46788889999999999


Q ss_pred             ECCChhhH-HhHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCC
Q 030524           90 DVASRQSF-LNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKR  130 (175)
Q Consensus        90 d~~~~~~~-~~~~~~~~~~~~~---~~~~~~~iiv~nk~D~~~~~  130 (175)
                      |+++..++ .....++..+...   ...++|+++++||+|+..+.
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            99997653 4455555544332   23578999999999996543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=6.6e-23  Score=142.24  Aligned_cols=156  Identities=20%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEE----------------EECCeEEEEEEEeCCCcccccccc
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM----------------YLEDRTVRLQLWDTAGQERFRSLI   75 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~~~~~   75 (175)
                      |+++|++++|||||+++|++...........+........                .++.....+.++|||||..|...+
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998742211110000000000000                112233468999999999999988


Q ss_pred             cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-------------HH-------
Q 030524           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-------------IE-------  135 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-------------~~-------  135 (175)
                      ...+..+|++|+|+|+.++-.-+. ...+..+..   .++|+++++||+|+.......             ..       
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888999999999999986533222 222222222   478999999999986532211             00       


Q ss_pred             HH----HHHHHh--------------cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524          136 EG----EAKSRE--------------LNVMFIETSAKAGFNIKLCCHTLNSLIT  171 (175)
Q Consensus       136 ~~----~~~~~~--------------~~~~~~~~s~~~~~~v~~~f~~l~~~~~  171 (175)
                      ..    ..+...              ..++++++||.+|.|++++++.|.+...
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            00    001100              0147899999999999999998877654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=2e-22  Score=139.22  Aligned_cols=156  Identities=19%  Similarity=0.215  Sum_probs=112.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (175)
                      ..||+++|+.|||||||++++....    ..+|.++..  ..+..++  +.+.+||++|++.++..|..++.++++++++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            5899999999999999999997543    346666443  3344555  6799999999999999999999999999999


Q ss_pred             EECCCh----------hhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCC----C---------------------
Q 030524           89 YDVASR----------QSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQ----V---------------------  132 (175)
Q Consensus        89 ~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~----~---------------------  132 (175)
                      +|+++.          .++.+...++..+.... ..++|+++++||+|+.+++.    .                     
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            999853          23444444444444443 37899999999999843210    0                     


Q ss_pred             -----CHHHHHHHH-----Hh--------cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          133 -----SIEEGEAKS-----RE--------LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       133 -----~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                           ...++..+.     ..        ..+-.+++||.++.+++.+|+.+.+.|+.
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                 122222221     11        12346789999999999999987776654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=9.1e-22  Score=134.44  Aligned_cols=166  Identities=16%  Similarity=0.127  Sum_probs=105.2

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcc---cccceeeE--EEEEEE------------------------ECC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY---QATIGIDF--LSKTMY------------------------LED   55 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~--~~~~~~------------------------~~~   55 (175)
                      ....+++|+++|+.++|||||+++|++.......   ......+.  ......                        ...
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            3455699999999999999999999874221110   00000000  000000                        011


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--  133 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--  133 (175)
                      ....+.+.|+|||.+|...+...+..+|++|+|+|+.++-.-...+..+..... . ...|+++++||+|+.+.....  
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~-~i~~iIV~vNK~Dl~~~~~~~~~  161 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-I-GVKNLIIVQNKVDVVSKEEALSQ  161 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T-TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-c-CCceeeeccccCCCccchHHHHH
Confidence            234689999999999998888888999999999999875211222333332222 2 234788889999986533211  


Q ss_pred             HHHHHHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          134 IEEGEAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       134 ~~~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ......+....   +++++++||+.|.|++++++.+.+++-+
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            12223333322   3689999999999999999998887643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=9.7e-22  Score=133.34  Aligned_cols=163  Identities=19%  Similarity=0.204  Sum_probs=106.7

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCCc---ccc--cceeeEEEEEEE-------------------ECCeEEEEE
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---YQA--TIGIDFLSKTMY-------------------LEDRTVRLQ   61 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~---~~~--~~~~~~~~~~~~-------------------~~~~~~~~~   61 (175)
                      ....++|+++|+.++|||||+++|++......   ...  +....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            34568999999999999999999987432211   111  111111111110                   011245689


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHH
Q 030524           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEA  139 (175)
Q Consensus        62 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~  139 (175)
                      ++|+|||..|...+...+..+|++++|+|+.++...+..++.+..+...  ...+++++.||+|+.+....  .......
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh--cCccceeeeecccchhhHHHHHHHHHHHH
Confidence            9999999999998888889999999999998763333334443333332  23457888999998653221  1223334


Q ss_pred             HHHhc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          140 KSREL---NVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       140 ~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      +....   +++++++||++|+|++++++.+.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            44433   36899999999999999998887754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2e-23  Score=140.52  Aligned_cols=157  Identities=18%  Similarity=0.080  Sum_probs=96.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc----ccc---ccccCCc
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----LIP---SYIRDSS   83 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~---~~~~~~d   83 (175)
                      +|+++|++|||||||+|+|.+........+..+.+.........+. ..+.+|||||..+...    ...   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999886643222222222222222323222 3588999999532111    111   2245688


Q ss_pred             EEEEEEECCChhhHHh--HHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEeccCCC
Q 030524           84 VAVVVYDVASRQSFLN--TSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAG  156 (175)
Q Consensus        84 ~~i~v~d~~~~~~~~~--~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~  156 (175)
                      .++++++....+....  ...+........   ..++|+++++||+|+.+..    ...+.+....  +.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCC
Confidence            8888887664432221  111111222221   2468999999999986432    2333333333  578999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 030524          157 FNIKLCCHTLNSLITV  172 (175)
Q Consensus       157 ~~v~~~f~~l~~~~~~  172 (175)
                      +|++++++.+.+.+..
T Consensus       158 ~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         158 EGLRELLFEVANQLEN  173 (185)
T ss_dssp             STTHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999887643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=1.3e-21  Score=132.64  Aligned_cols=155  Identities=14%  Similarity=0.148  Sum_probs=90.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-------------ccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------------RSL   74 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~   74 (175)
                      .-.+|+|+|++|||||||+|+|++...........+.+..........   ...+.|++|-...             ...
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhh
Confidence            335899999999999999999998653222222222222222222232   2345666652111             112


Q ss_pred             ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH----hcCCeEEE
Q 030524           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR----ELNVMFIE  150 (175)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~~  150 (175)
                      +...+.++|++++++|+.++..- ....+++.+..   .++|+++|+||+|+.+..+.. .....+..    ....+++.
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  173 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEE
T ss_pred             hhccccchhhhhhhhhccccccc-ccccccccccc---ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEE
Confidence            22345678999999999765332 12333333333   368999999999985433322 11222222    23458999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 030524          151 TSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       151 ~s~~~~~~v~~~f~~l~~~~  170 (175)
                      +||++|.|+++++++|.+.+
T Consensus       174 ~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         174 FSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=6.9e-22  Score=133.73  Aligned_cols=160  Identities=14%  Similarity=0.078  Sum_probs=106.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC-----CC---------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD-----KF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   73 (175)
                      .+++|+++|+.++|||||+++|++.     ..         ........+++.......+......+.++|||||.+|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            4589999999999999999999751     00         001122233444444444444446789999999999999


Q ss_pred             cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---CHHHHHHHHHhcC-----
Q 030524           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELN-----  145 (175)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~---~~~~~~~~~~~~~-----  145 (175)
                      .+..-+..+|++++|+|+.++..-+ .++.+......  ...|+|++.||+|+.++.+.   -..+.+.+....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            8888889999999999998754322 23333333222  23578888999998643221   1123334444443     


Q ss_pred             CeEEEeccCCC----------CCHHHHHHHHHHHH
Q 030524          146 VMFIETSAKAG----------FNIKLCCHTLNSLI  170 (175)
Q Consensus       146 ~~~~~~s~~~~----------~~v~~~f~~l~~~~  170 (175)
                      ++++.+|+++|          .++.++++.+.+.+
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            57999999988          47888888776654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.3e-20  Score=121.85  Aligned_cols=156  Identities=16%  Similarity=0.213  Sum_probs=99.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCc-ccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI   79 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   79 (175)
                      =.|+++|.+|||||||+|+|++...... ..+.............+..  .+..+|++|...         .........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccccch
Confidence            3589999999999999999998764322 2222222222223333332  466788887321         112233345


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCC
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN  158 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  158 (175)
                      ..+++++++.|..+...  ....+...+.   ....|.++++||.|............+.....++ .+++++||++|.|
T Consensus        84 ~~~~~~l~~~d~~~~~~--~~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTP--DDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             CCEEEEEEEEETTCCCH--HHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             hhcceeEEEEecCccch--hHHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            56788888888765321  2222222222   2467889999999976654444455555666666 4899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030524          159 IKLCCHTLNSLITV  172 (175)
Q Consensus       159 v~~~f~~l~~~~~~  172 (175)
                      ++++++.+.+.+.+
T Consensus       159 i~~L~~~i~~~lpe  172 (179)
T d1egaa1         159 VDTIAAIVRKHLPE  172 (179)
T ss_dssp             HHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999887643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.81  E-value=1.7e-19  Score=124.08  Aligned_cols=154  Identities=17%  Similarity=0.208  Sum_probs=97.9

Q ss_pred             CCCCCCceeEEEECCCCCCHHHHHHHHhcCC--CCCc-----------------------------ccccceeeEEEEEE
Q 030524            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDK--FDNT-----------------------------YQATIGIDFLSKTM   51 (175)
Q Consensus         3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~~-----------------------------~~~~~~~~~~~~~~   51 (175)
                      ..+....+||+++|+.++|||||+++|+...  ....                             .....+.+......
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            3456677999999999999999999997421  1000                             00001111111112


Q ss_pred             EECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 030524           52 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR  130 (175)
Q Consensus        52 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~  130 (175)
                      ........+.++|+|||..|...+..-+..+|++|+|+|+.++..-+. .+.+. +...  .+++ ++++.||+|+.+..
T Consensus        83 ~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~-~~~~--~gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          83 YFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSY-IASL--LGIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             EEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHH-HHHH--TTCCEEEEEEECTTTTTSC
T ss_pred             EEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHH-HHHH--cCCCEEEEEEEcccccccc
Confidence            222233578999999999999999888999999999999986533222 22222 2222  3555 78888999987643


Q ss_pred             CCCH----HHHHHHHHhcC-----CeEEEeccCCCCCHH
Q 030524          131 QVSI----EEGEAKSRELN-----VMFIETSAKAGFNIK  160 (175)
Q Consensus       131 ~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~~v~  160 (175)
                      +...    .+...++...+     ++++++||.+|+|+.
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            3222    22344454443     378999999999884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=3.9e-20  Score=125.97  Aligned_cols=142  Identities=18%  Similarity=0.127  Sum_probs=91.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC------CC-----------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD------KF-----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (175)
                      .+++|+++|++++|||||+++|+..      ..           +.+.....+++.....+..++  .++.++|||||.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            4699999999999999999999742      00           001111222333333334444  5689999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHhcC-
Q 030524           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN-  145 (175)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~---~~~~~~~~~~~~~-  145 (175)
                      |...+..-+..+|++|+|+|+.++...+..+.| .....   .++| +++++||+|+.+..+.   ...+.+.+....+ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            999988889999999999999876544433333 22222   3566 6777899998653221   1122333333332 


Q ss_pred             ----CeEEEeccCC
Q 030524          146 ----VMFIETSAKA  155 (175)
Q Consensus       146 ----~~~~~~s~~~  155 (175)
                          ++++..|+..
T Consensus       156 ~~~~i~~i~~sa~~  169 (204)
T d2c78a3         156 PGDEVPVIRGSALL  169 (204)
T ss_dssp             CTTTSCEEECCHHH
T ss_pred             Ccccceeeeeechh
Confidence                4688888753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=7.2e-19  Score=119.92  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=80.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccc----ccCCcE
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY----IRDSSV   84 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d~   84 (175)
                      ..+|+++|++|+|||||+|+|++....+    +.+.+.....  +......+.+||+||++.+...+..+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4689999999999999999999876542    2222222223  23333468999999998777665544    345688


Q ss_pred             EEEEEECCC-hhhHHhHHHHHHH----HHHhcCCCCcEEEEEeCCCCCCC
Q 030524           85 AVVVYDVAS-RQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDLVEK  129 (175)
Q Consensus        85 ~i~v~d~~~-~~~~~~~~~~~~~----~~~~~~~~~~~iiv~nk~D~~~~  129 (175)
                      +++++|+.+ ..+++....|+..    +......++|+++++||+|+.+.
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            899988774 4556665555543    33445578999999999998653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.3e-18  Score=116.56  Aligned_cols=165  Identities=14%  Similarity=0.080  Sum_probs=86.0

Q ss_pred             CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------
Q 030524            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------   73 (175)
Q Consensus         2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------   73 (175)
                      ++.+....++|+++|.+|+|||||+|+|.+...........+................+..++.++......        
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            456777889999999999999999999988764433222221111222222222222222222222111111        


Q ss_pred             --cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHhc--CCe
Q 030524           74 --LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSREL--NVM  147 (175)
Q Consensus        74 --~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--~~~~~~~~~~~--~~~  147 (175)
                        .........+.++.+.+........ ...++..+..   ...++++++||+|+.......  .+..++.....  ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence              1112223445566666665443222 2233333332   467889999999976432221  12222222222  248


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 030524          148 FIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       148 ~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ++.+||++|.|++++++.|.+.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999999886643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=6.6e-17  Score=113.80  Aligned_cols=112  Identities=21%  Similarity=0.285  Sum_probs=80.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCC------------------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKF------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      .+|+++|+.++|||||+++++...-                  +.+.....++.........++  .++.++||||+.+|
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhh
Confidence            4799999999999999999974210                  011111122233333444455  56999999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      .......+..+|++|+|+|+.++-.-+..+.| .....   .++|.++++||+|..
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTST
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEeccccc
Confidence            99999999999999999999987555444444 33332   479999999999975

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1e-18  Score=121.40  Aligned_cols=149  Identities=17%  Similarity=0.201  Sum_probs=96.3

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CcccccceeeEEEEEEEECC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFD-----------------------------NTYQATIGIDFLSKTMYLED   55 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (175)
                      ..+++|+++|+.++|||||+.+|+..  ...                             .+.....+++.....+..++
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            34689999999999999999999631  110                             01111122222233333333


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhh---H--H-hHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---F--L-NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~--~-~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~  128 (175)
                        .++.+.|||||.+|...+..-+..+|++|+|+|+....-   +  + ..+..+.... .  .++| +++++||+|+.+
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~-~--~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T--LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H--TTCCEEEEEEECGGGGT
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH-H--cCCCeEEEEEECCCCCC
Confidence              679999999999999999889999999999999975421   0  1 1222222222 1  3565 778899999865


Q ss_pred             CCCCC----HHHHHHHHHhcC-----CeEEEeccCCCCCHH
Q 030524          129 KRQVS----IEEGEAKSRELN-----VMFIETSAKAGFNIK  160 (175)
Q Consensus       129 ~~~~~----~~~~~~~~~~~~-----~~~~~~s~~~~~~v~  160 (175)
                      ..+..    ..+...+....+     ++++.+|+..|+|+.
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            43322    123344444443     578999999998864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.72  E-value=2.3e-18  Score=120.12  Aligned_cols=156  Identities=19%  Similarity=0.252  Sum_probs=83.3

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cccccceeeEEEEEEEECC
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN---------------------------TYQATIGIDFLSKTMYLED   55 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~   55 (175)
                      ....+++|+++|+.++|||||+++|+...-  ..                           ......+............
T Consensus        20 ~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~   99 (245)
T d1r5ba3          20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET   99 (245)
T ss_dssp             SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred             cCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc
Confidence            345578999999999999999999964210  00                           0000011111111111222


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhh---HH---hHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 030524           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (175)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~  128 (175)
                      ....+.+.|+|||..|...+..-...+|++++|+|+.++.-   ++   .....+..+. .  .++| +++++||+|+..
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~-~--~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-T--QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-H--TTCSSEEEEEECTTSTT
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHH-H--cCCCeEEEEEEcCCCCc
Confidence            23468999999999999999888999999999999986421   11   1222222222 2  2454 778889999863


Q ss_pred             CCCC--C----HHHHHHHHHhc-------CCeEEEeccCCCCCHHHHH
Q 030524          129 KRQV--S----IEEGEAKSREL-------NVMFIETSAKAGFNIKLCC  163 (175)
Q Consensus       129 ~~~~--~----~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~f  163 (175)
                      ....  .    .++...+....       .++++++||++|+|+.+++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            2211  1    11222222222       2579999999999998754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=7.7e-18  Score=116.14  Aligned_cols=152  Identities=19%  Similarity=0.252  Sum_probs=92.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cccccceeeEEEEEEEECCeEE
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--DN---------------------------TYQATIGIDFLSKTMYLEDRTV   58 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (175)
                      .+++|+++|+.++|||||+.+|+...-  ..                           ......+.+........+....
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            368999999999999999999864110  00                           0000112222222223334446


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHH------hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFL------NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~  132 (175)
                      .+.++|||||.+|...+..-+.-+|++|+|+|+.+...-+      ..++.+.... .. ...++++++||+|+......
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~-~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TM-GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HT-TCTTCEEEEECGGGSSSTTC
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-Hh-CCCceEEEEEcccCCCcccc
Confidence            7999999999999999999999999999999998753111      1222222221 11 23457888999998643221


Q ss_pred             C------HHHHHHHHHhcC-----CeEEEeccCCCCCHHH
Q 030524          133 S------IEEGEAKSRELN-----VMFIETSAKAGFNIKL  161 (175)
Q Consensus       133 ~------~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  161 (175)
                      .      ..+...+...++     ++++++||..|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            1      122333333333     4789999999999853

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=8.8e-17  Score=112.88  Aligned_cols=112  Identities=15%  Similarity=0.197  Sum_probs=80.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCC------------------cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDN------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (175)
                      .+|+++|+.++|||||+++++...-..                  +.....++.........++  .++.++||||+.+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            479999999999999999996421100                  0111123333344444555  46899999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      .......+..+|++|+|+|+.++-..+..+.| .....   .++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh---ccccccccccccccc
Confidence            99999999999999999999877554444444 23332   479999999999963

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=5.6e-15  Score=103.58  Aligned_cols=126  Identities=12%  Similarity=0.095  Sum_probs=77.8

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-------cccc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPS   77 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~   77 (175)
                      ...+++|+++|.+|+|||||+|.++++.... ...+..+.+........++  ..+.++||||..+...       ....
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            3467999999999999999999999976542 2223333344444455666  4689999999432111       1111


Q ss_pred             c--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCCC
Q 030524           78 Y--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVS  133 (175)
Q Consensus        78 ~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~~~~~  133 (175)
                      +  ....|+++||++++...--......+..+...++.  -.+++++.||+|...+....
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence            1  23568899998876431111123333344444332  25789999999987654444

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.8e-15  Score=112.31  Aligned_cols=156  Identities=13%  Similarity=0.119  Sum_probs=89.0

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCCCCCccccccee---eEEEEEEEECCeEEEEEEEeCCCcccccccc-----cccc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----PSYI   79 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~   79 (175)
                      .+++|+++|.+|+|||||+|+|++...........++   +.........+ .-.+.+|||||-.......     ...+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4699999999999999999999986543322211111   11111122222 1247899999965433222     2235


Q ss_pred             cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CCCCCHHHH--------HHHHHhc
Q 030524           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIEEG--------EAKSREL  144 (175)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~-------~~~~~~~~~--------~~~~~~~  144 (175)
                      ..+|.++++.|..-.+   .-...+..+..   .++|+++|.||+|...       .........        .......
T Consensus       134 ~~~d~~l~~~~~~~~~---~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK---NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCH---HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCH---HHHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            5788888887643221   12223333333   3689999999999531       111111111        1122223


Q ss_pred             CC---eEEEeccCC--CCCHHHHHHHHHHHH
Q 030524          145 NV---MFIETSAKA--GFNIKLCCHTLNSLI  170 (175)
Q Consensus       145 ~~---~~~~~s~~~--~~~v~~~f~~l~~~~  170 (175)
                      ++   +++.+|...  ..++.++.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence            33   678888765  347888888877664

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.4e-15  Score=110.13  Aligned_cols=119  Identities=17%  Similarity=0.252  Sum_probs=81.3

Q ss_pred             CCCCce-eEEEECCCCCCHHHHHHHHhcCC--C--------------CCcccccceeeEEEEEEE--------------E
Q 030524            5 SALAKY-KLVFLGDQSVGKTSIITRFMYDK--F--------------DNTYQATIGIDFLSKTMY--------------L   53 (175)
Q Consensus         5 ~~~~~~-~i~l~G~~~~GKSsli~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~--------------~   53 (175)
                      .....+ +|+++|+.++|||||+++|+...  .              ..+.....++........              .
T Consensus        12 ~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~   91 (341)
T d1n0ua2          12 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT   91 (341)
T ss_dssp             HCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred             cCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccc
Confidence            344456 59999999999999999997311  0              111111112111111111              1


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (175)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~  127 (175)
                      +++.+.+.++|||||.+|.......+.-+|++++|+|+.++-..+....|.....    .++|.++++||+|..
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECcccc
Confidence            3456789999999999999999999999999999999987755555444433332    479999999999963

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.46  E-value=6e-15  Score=102.35  Aligned_cols=113  Identities=14%  Similarity=-0.032  Sum_probs=68.0

Q ss_pred             EEEEEEeCCCccccccccccc-----ccCCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524           58 VRLQLWDTAGQERFRSLIPSY-----IRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~  129 (175)
                      ..+.+.|+||+..+.......     ....++++++.|+..   +..+.............  -..|.++++||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccH
Confidence            358899999987654432211     224678899998753   33322222111112222  36889999999998643


Q ss_pred             CCCCHH--------------------------HHHHHHHh--cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          130 RQVSIE--------------------------EGEAKSRE--LNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       130 ~~~~~~--------------------------~~~~~~~~--~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      .+....                          .......+  ..++++++||++|+|++++++.|.+..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~~  243 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  243 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            211100                          00000111  24689999999999999999999887653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.44  E-value=7.7e-14  Score=100.43  Aligned_cols=102  Identities=12%  Similarity=0.037  Sum_probs=62.0

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~  137 (175)
                      +.+.+++|.|...-...   ...-+|..++|.....++..+..+.-+.++        +-++++||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~--------aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL--------ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH--------CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh--------hheeeEeccccccchHHHHHHH
Confidence            46788888885432222   234599999999988776555544432222        2378889999754332222222


Q ss_pred             HHHHH----------hcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          138 EAKSR----------ELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       138 ~~~~~----------~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      ..+..          .+..+++.+|+++|+|++++++++.+..
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            11211          1345899999999999999999987654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.7e-13  Score=98.70  Aligned_cols=101  Identities=17%  Similarity=0.083  Sum_probs=57.1

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--HHH
Q 030524           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEE  136 (175)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--~~~  136 (175)
                      .+.+++|.|...-.   ..+...+|.+++|.+....+..+..+.-+.++        +-++|+||+|........  ..+
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEEEeecccchHHHHHHHHH
Confidence            35566666533211   12445689999998866555554444433332        227888999975422111  111


Q ss_pred             HHHHHH-------hcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524          137 GEAKSR-------ELNVMFIETSAKAGFNIKLCCHTLNSLI  170 (175)
Q Consensus       137 ~~~~~~-------~~~~~~~~~s~~~~~~v~~~f~~l~~~~  170 (175)
                      .....+       .+..+++.|||.+|+|++++++.|.+..
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            121111       2335899999999999999999987644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=6.3e-11  Score=83.58  Aligned_cols=84  Identities=17%  Similarity=0.166  Sum_probs=50.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC------------eE---EEEEEEeCCCcccc--
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED------------RT---VRLQLWDTAGQERF--   71 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~i~D~~G~~~~--   71 (175)
                      .++|+++|.|+||||||++++.+........|..+.+...-.+.++.            .+   ..+.+.|.||.-.-  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            47999999999999999999998765432222222221111222221            11   25889999994211  


Q ss_pred             --cccc---cccccCCcEEEEEEECC
Q 030524           72 --RSLI---PSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        72 --~~~~---~~~~~~~d~~i~v~d~~   92 (175)
                        ..+.   -.-++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence              1122   23367899999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=1e-10  Score=83.16  Aligned_cols=121  Identities=20%  Similarity=0.279  Sum_probs=72.8

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEE------------------------------------
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSK------------------------------------   49 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~------------------------------------   49 (175)
                      ....+|+|+|..++|||||+|.|++..+ +....++........                                    
T Consensus        24 ~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (299)
T d2akab1          24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHh
Confidence            4456899999999999999999999875 333333221111111                                    


Q ss_pred             --------------EEEECCeEEEEEEEeCCCccc-------------ccccccccccCCcE-EEEEEECCChhhHHhHH
Q 030524           50 --------------TMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSSV-AVVVYDVASRQSFLNTS  101 (175)
Q Consensus        50 --------------~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~  101 (175)
                                    .+..+. ...+.++|+||-..             ...++..|+.+.+. +++|.+++...+-+...
T Consensus       104 ~~~~~~~~~~~i~l~~~~p~-~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~  182 (299)
T d2akab1         104 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hCCCcCcCCccEEEEEcCCC-CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH
Confidence                          000010 11378999999431             12345666777765 55567766554444444


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524          102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (175)
Q Consensus       102 ~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~  131 (175)
                      .+.+.+   .+...++++|+||+|..++..
T Consensus       183 ~~~~~~---~~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         183 KIAKEV---DPQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHHHH---CTTCSSEEEEEECGGGSCTTC
T ss_pred             HHHHHh---CcCCCceeeEEeccccccchh
Confidence            444433   224568899999999865433

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=4.5e-10  Score=79.78  Aligned_cols=86  Identities=19%  Similarity=0.188  Sum_probs=55.6

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCC--CCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCcc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQE   69 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~   69 (175)
                      ...++|+++|.|+||||||.|.+.+...  ..+|..++ ++...-.+.++..               ...+.+.|.||..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftT-i~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT-IDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCC-CCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccC-ccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            3568999999999999999999997643  23443332 2322222333321               2468899999843


Q ss_pred             ccc-------ccccccccCCcEEEEEEECCC
Q 030524           70 RFR-------SLIPSYIRDSSVAVVVYDVAS   93 (175)
Q Consensus        70 ~~~-------~~~~~~~~~~d~~i~v~d~~~   93 (175)
                      .-.       ...-.-++++|+++.|+|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            211       122333679999999998864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=3e-10  Score=81.53  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=44.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceee------EEEEEEE----------------ECCeEEEEEEEeCCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID------FLSKTMY----------------LEDRTVRLQLWDTAG   67 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~------~~~~~~~----------------~~~~~~~~~i~D~~G   67 (175)
                      ++|+++|.||||||||+|+|.+........|..+++      .......                .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            479999999999999999999876543322222221      1111110                011235799999999


Q ss_pred             cccc-------cccccccccCCcEEEEEEECC
Q 030524           68 QERF-------RSLIPSYIRDSSVAVVVYDVA   92 (175)
Q Consensus        68 ~~~~-------~~~~~~~~~~~d~~i~v~d~~   92 (175)
                      --..       ....-..++++|+++.|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            4221       112223357899999999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.02  E-value=6.2e-10  Score=79.35  Aligned_cols=68  Identities=22%  Similarity=0.298  Sum_probs=42.1

Q ss_pred             EEEEEeCCCccc-------------ccccccccccCCcEEEEEE-ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524           59 RLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVY-DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (175)
Q Consensus        59 ~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~  124 (175)
                      .+.++|+||-..             ...++..|+.+++.+|+++ +......-+....+.+.+   .+....+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            478999999432             2245677888999876655 444332222333333333   23456899999999


Q ss_pred             CCCCC
Q 030524          125 DLVEK  129 (175)
Q Consensus       125 D~~~~  129 (175)
                      |..+.
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=4.9e-09  Score=73.50  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=36.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (175)
                      ...++|+++|-||||||||+|+|.+..... ...|..+  .....+..+.   .+.++||||-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~T--r~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT--TSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCccccc--ccceEEECCC---CeEEecCCCc
Confidence            457999999999999999999999976532 2233332  2222222322   3899999993

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=1.2e-07  Score=63.89  Aligned_cols=87  Identities=20%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             cccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH--hcCCeEEEec
Q 030524           76 PSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR--ELNVMFIETS  152 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~--~~~~~~~~~s  152 (175)
                      +..+.|.|.+++|+++.+|+ +...+.+++-....   .+++.++|+||+|+.++..  ......+..  ..+.+++.+|
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEec
Confidence            44567999999999988764 45556666655544   4799999999999965332  222233333  2346899999


Q ss_pred             cCCCCCHHHHHHHHH
Q 030524          153 AKAGFNIKLCCHTLN  167 (175)
Q Consensus       153 ~~~~~~v~~~f~~l~  167 (175)
                      ++++.|++++...+.
T Consensus        80 a~~~~g~~~L~~~l~   94 (225)
T d1u0la2          80 AKTGMGIEELKEYLK   94 (225)
T ss_dssp             TTTCTTHHHHHHHHS
T ss_pred             cccchhHhhHHHHhc
Confidence            999999999887663

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.47  E-value=6.6e-08  Score=64.83  Aligned_cols=145  Identities=15%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC----------cccc-----------cceeeEEEEEEEEC--------
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN----------TYQA-----------TIGIDFLSKTMYLE--------   54 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~----------~~~~-----------~~~~~~~~~~~~~~--------   54 (175)
                      .+...+.-|+++||+||||||.+-+|.......          .+..           ..++.+.......+        
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a   86 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG   86 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHH
Confidence            345566779999999999999987765421100          0000           01111110000000        


Q ss_pred             -----CeEEEEEEEeCCCcccccc------ccccc--ccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEE
Q 030524           55 -----DRTVRLQLWDTAGQERFRS------LIPSY--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLV  120 (175)
Q Consensus        55 -----~~~~~~~i~D~~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv  120 (175)
                           .....+.++||+|...+..      .+..+  .-+.+-.++|.+++... ..+.....+    ...  ++. -++
T Consensus        87 ~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~----~~~--~~~-~lI  159 (211)
T d1j8yf2          87 VEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN----QAS--KIG-TII  159 (211)
T ss_dssp             HHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH----HHC--TTE-EEE
T ss_pred             HHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh----ccc--Ccc-eEE
Confidence                 0123689999999543321      11111  12457788899887542 222222222    121  222 355


Q ss_pred             EeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524          121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL  161 (175)
Q Consensus       121 ~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  161 (175)
                      .||.|..    ...-.....+.+.++|+..++  .|+++.+
T Consensus       160 ~TKlDet----~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         160 ITKMDGT----AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             EECTTSC----SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             EecccCC----CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            7999952    335677888889999988886  5766643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=4.5e-08  Score=66.11  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -..+++|++|||||||+|+|.+..
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh
Confidence            357899999999999999998753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.44  E-value=1.6e-06  Score=56.17  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .||+++|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999998863

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.40  E-value=6.3e-08  Score=65.00  Aligned_cols=144  Identities=16%  Similarity=0.139  Sum_probs=75.4

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCc----------ccc-----------cceeeEEEEEEEEC---------
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQA-----------TIGIDFLSKTMYLE---------   54 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~----------~~~-----------~~~~~~~~~~~~~~---------   54 (175)
                      +...+..|+++||+||||||.+-+|...-....          +..           ..++.++...-.-+         
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~   86 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV   86 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence            345667899999999999999777653211000          000           01111110000000         


Q ss_pred             ----CeEEEEEEEeCCCcccccc----cccccc---c-----CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEE
Q 030524           55 ----DRTVRLQLWDTAGQERFRS----LIPSYI---R-----DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV  118 (175)
Q Consensus        55 ----~~~~~~~i~D~~G~~~~~~----~~~~~~---~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i  118 (175)
                          ...+.+.++||+|...+..    ....+.   .     ..+-.++|.|++..  .+.+......... .  ++ --
T Consensus        87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~-~--~~-~~  160 (213)
T d1vmaa2          87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA-V--NV-TG  160 (213)
T ss_dssp             HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH-S--CC-CE
T ss_pred             HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccc-c--CC-ce
Confidence                0123589999999432222    111111   1     24678899998644  2223322222221 1  22 24


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524          119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus       119 iv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      +++||.|...  .  .-.+...+...++|+..++  +|+.++
T Consensus       161 lI~TKlDe~~--~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~  196 (213)
T d1vmaa2         161 IILTKLDGTA--K--GGITLAIARELGIPIKFIG--VGEKAE  196 (213)
T ss_dssp             EEEECGGGCS--C--TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             EEEecccCCC--c--ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            5569999532  2  2366777888899988886  566664

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=3.4e-07  Score=61.25  Aligned_cols=90  Identities=12%  Similarity=0.120  Sum_probs=51.7

Q ss_pred             EEEEEEeCCCcccccc----cccc---ccc-----CCcEEEEEEECCCh-hhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524           58 VRLQLWDTAGQERFRS----LIPS---YIR-----DSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~---~~~-----~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~  124 (175)
                      +.+.++||+|......    .+..   ..+     ..+-.++|.|++.. +........+..+      ++. -++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~-~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------GLT-GITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------CCC-EEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------CCc-eEEEeec
Confidence            3589999999432221    1111   122     24688889998744 2333333322222      222 3556999


Q ss_pred             CCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524          125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      |...  .  .-.+...+.+.++|+..++  .|+.++
T Consensus       165 De~~--~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTA--K--GGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCT--T--TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCC--C--ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            9532  2  2366677888899988886  677664

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=8e-07  Score=60.08  Aligned_cols=72  Identities=11%  Similarity=0.100  Sum_probs=39.9

Q ss_pred             CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEeccCCCCCH
Q 030524           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNI  159 (175)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v  159 (175)
                      .+.+|.++|+.+......-...+......+.     ++++||+|+.++.    +..+...+..+  +++++++ ....++
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD-----~ivlNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~-~g~v~~  191 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGYAD-----RILLTKTDVAGEA----EKLHERLARINARAPVYTVT-HGDIDL  191 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHTCS-----EEEEECTTTCSCT----HHHHHHHHHHCSSSCEEECC-SSCCCG
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHhCC-----cccccccccccHH----HHHHHHHHHHhCCCeEEEee-CCccCH
Confidence            5788999998876433222222222222232     6778999986532    34555555555  4777654 333455


Q ss_pred             HHHH
Q 030524          160 KLCC  163 (175)
Q Consensus       160 ~~~f  163 (175)
                      ..+|
T Consensus       192 ~~ll  195 (222)
T d1nija1         192 GLLF  195 (222)
T ss_dssp             GGGS
T ss_pred             HHhh
Confidence            4443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=6.6e-07  Score=62.37  Aligned_cols=90  Identities=9%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccC
Q 030524           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK  154 (175)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (175)
                      +...++.+|++++|.|+.+|.+..+  ..+..+.    .+.|.++|+||+|+.+...  .+...+.....+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeecc
Confidence            4556889999999999988865543  2223332    3689999999999875331  222233334456789999999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 030524          155 AGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       155 ~~~~v~~~f~~l~~~~~~  172 (175)
                      ++.+..++...+.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          81 NGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhh
Confidence            999998887776655443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.23  E-value=2e-06  Score=57.27  Aligned_cols=90  Identities=18%  Similarity=0.108  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCccccccc----ccccc--------cCCcEEEEEEECCCh-hhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524           58 VRLQLWDTAGQERFRSL----IPSYI--------RDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~  124 (175)
                      ..+.++||+|...+...    +..+.        ...+-.++|.|++.. +........+..+.      +. -++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~------~~-~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG------LT-GVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC------CS-EEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC------Cc-eEEEecc
Confidence            46899999995433221    11111        245778889988754 44444444444332      22 3556999


Q ss_pred             CCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524          125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (175)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  160 (175)
                      |....    .-.+...+...++|+..++  +|++.+
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~--~Gq~p~  191 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVG--VGEGPD  191 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChH
Confidence            95322    2255667778888877775  355443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=2.3e-07  Score=62.74  Aligned_cols=88  Identities=18%  Similarity=0.181  Sum_probs=61.3

Q ss_pred             cccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHhcCCeEEEec
Q 030524           76 PSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRELNVMFIETS  152 (175)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--~~~~~~~~~~~~~~~~~~s  152 (175)
                      +.-..|.|.+++|+++.+|+ +...+.+++-....   .+++.++|+||+|+.++.+..  ...........|++++.+|
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeee
Confidence            44567999999999998774 55556666554433   578999999999986532211  1112223445689999999


Q ss_pred             cCCCCCHHHHHHHH
Q 030524          153 AKAGFNIKLCCHTL  166 (175)
Q Consensus       153 ~~~~~~v~~~f~~l  166 (175)
                      +.+++|++++..+|
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999998876654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=1.9e-07  Score=63.23  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -..+++|++|+|||||+|+|++..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            356799999999999999999753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.21  E-value=3.7e-07  Score=61.01  Aligned_cols=84  Identities=18%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524           58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~  130 (175)
                      ..+.++||+|...+..    .+..+  ..+.+-.++|.|.+.+. ..+..    ..+....+  +. -+++||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~----~~f~~~~~--~~-~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA----RAFDEKVG--VT-GLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH----HHHHHHTC--CC-EEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHH----HHHHhhCC--CC-eeEEeecCccc--
Confidence            3689999999543322    11111  23668889999987553 22222    22222221  22 35569999532  


Q ss_pred             CCCHHHHHHHHHhcCCeEEEec
Q 030524          131 QVSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s  152 (175)
                        ..-.+...+...+.|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              23466777888888887775

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.03  E-value=1.7e-06  Score=56.99  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=24.0

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      |+..++..|+++|+|||||||+..+|..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4566778899999999999999998865

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.01  E-value=2e-06  Score=55.28  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=23.4

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++..+|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999999988653

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.93  E-value=2.1e-06  Score=55.67  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-+|+|.|++|+|||||+++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.89  E-value=3.3e-06  Score=54.15  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..+|+++|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=3.6e-06  Score=53.83  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -|.|+|++|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999985

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.85  E-value=5.3e-06  Score=54.33  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +.++|+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999998875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.84  E-value=4.3e-06  Score=54.80  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ++.+|+|+|+|||||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999987653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.81  E-value=5.8e-06  Score=51.97  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |++.|+|||||||+++.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999998653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.78  E-value=6.5e-06  Score=53.38  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999987653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.76  E-value=1e-05  Score=53.02  Aligned_cols=26  Identities=15%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+-++|+|+|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999998764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.3e-05  Score=51.73  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=22.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....+.=|+++|+|||||||+..++..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345677899999999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=1e-05  Score=52.55  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +.+|+|+|+|||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999988653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=9.9e-06  Score=52.57  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ++|+++|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.72  E-value=1e-05  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.71  E-value=9.3e-06  Score=51.85  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |++.|+|||||||+.+.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.4e-05  Score=52.40  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +..|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998765

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.8e-05  Score=55.04  Aligned_cols=92  Identities=17%  Similarity=0.036  Sum_probs=50.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCCCC--Cc---ccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-----ccc--
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDKFD--NT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----IPS--   77 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~--   77 (175)
                      .-|.++|+.++|||+|+|.|++....  ..   ..-|.++-...... ..+....+.+.||.|.......     .+.  
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~~  111 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFA  111 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccccccccchhHHHHHH
Confidence            46788999999999999999986531  11   12233332222221 1334456899999995432211     011  


Q ss_pred             -cccCCcEEEE-EEECCChhhHHhHHH
Q 030524           78 -YIRDSSVAVV-VYDVASRQSFLNTSK  102 (175)
Q Consensus        78 -~~~~~d~~i~-v~d~~~~~~~~~~~~  102 (175)
                       .+.-++++|+ +....+...++.+..
T Consensus       112 l~~llSs~~i~N~~~~~~~~~l~~L~~  138 (277)
T d1f5na2         112 LAVLLSSTFVYNSIGTINQQAMDQLYY  138 (277)
T ss_dssp             HHHHHCSEEEEEEESCSSHHHHHTTHH
T ss_pred             HHHHHhCEEEEeccccCcHHHHHHHHH
Confidence             1123566665 455445555554433

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1e-05  Score=52.40  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+|+|+|+|||||||....|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.4e-05  Score=50.53  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +|+|+|++||||||+...|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=1.4e-05  Score=51.03  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      |.|+|.+|||||||+++|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.63  E-value=2.3e-05  Score=50.29  Aligned_cols=26  Identities=19%  Similarity=0.315  Sum_probs=21.7

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ......|.|+|.|||||||+...|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34558899999999999999987764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.2e-05  Score=50.55  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=2.7e-05  Score=51.39  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +.-|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.6e-05  Score=49.82  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+|+++|++||||||+...|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999887754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=2.8e-05  Score=50.70  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+|+||+||||+||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.51  E-value=3.9e-05  Score=49.96  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=22.0

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...++-|+|.|++|||||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=4.5e-05  Score=49.95  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.|+++|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345888899999999999998763

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.48  E-value=3.2e-05  Score=49.19  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +|+++|++||||||+...|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=3.3e-05  Score=50.07  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999998764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=3.5e-05  Score=51.10  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 030524           12 LVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      |+|+||+||||+||+++|+...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6788999999999999998653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.3e-05  Score=49.26  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=18.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =++++|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999998653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2e-05  Score=51.34  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=20.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +...|.++|+|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999998854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.45  E-value=3.4e-05  Score=49.32  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -|+|.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3778899999999999988654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.45  E-value=3.6e-05  Score=49.63  Aligned_cols=20  Identities=30%  Similarity=0.258  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67789999999999998753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=3.8e-05  Score=52.16  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =+++++|+.|||||||++.+.+-.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            468999999999999999887743

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.43  E-value=4.7e-05  Score=52.19  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=20.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+.-|++.||||+|||||...+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445699999999999999998865

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4.3e-05  Score=49.54  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+|+||+||||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            888999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.40  E-value=4.4e-05  Score=48.75  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999998764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=4.9e-05  Score=49.72  Aligned_cols=20  Identities=20%  Similarity=0.580  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      |+|+||+||||+||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999865

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.39  E-value=5.7e-05  Score=50.34  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.2

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +++.|++-|||||||||+...|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999998765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.36  E-value=4.7e-05  Score=49.85  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      --|+|+|+|||||||+..+|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34788999999999999998764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.36  E-value=8.2e-05  Score=50.55  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|+|||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999887643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=8.7e-05  Score=46.90  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ..-|.+-|+-|+|||||++.++..-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3568889999999999999988743

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.35  E-value=5.9e-05  Score=48.31  Aligned_cols=21  Identities=14%  Similarity=0.341  Sum_probs=18.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|+++|++||||||+...|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.35  E-value=7.5e-05  Score=49.27  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+++-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999988754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=6.4e-05  Score=50.67  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -++++||.|+|||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=8e-05  Score=50.13  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999777643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.31  E-value=5.9e-05  Score=51.63  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|+|||||++.+.+-.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            368999999999999999887643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.1e-05  Score=51.13  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|||||||++.+.+-.
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            368999999999999999887643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.26  E-value=8.6e-05  Score=50.21  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++||.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35689999999999999988753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.25  E-value=9.5e-05  Score=48.29  Aligned_cols=28  Identities=18%  Similarity=0.381  Sum_probs=24.2

Q ss_pred             CCCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            4 VSALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+..+++-|+|-|+.||||||+++.|..
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4566788999999999999999998765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0001  Score=48.83  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ++-|++.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999998743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.24  E-value=0.00011  Score=52.12  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .+|++.|++||||||+++.|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            569999999999999999998643

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=8e-05  Score=51.74  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcCC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      =.++++|+.|+|||||++.+++-.
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            358999999999999999988743

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.23  E-value=9.4e-05  Score=50.02  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999888753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.20  E-value=0.00012  Score=49.36  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-.+++.||||+||||+++.+.+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.19  E-value=0.00011  Score=49.75  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999888753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.17  E-value=7.4e-05  Score=50.23  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++||.|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            47899999999999999988754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=9.7e-05  Score=50.01  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999887743

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00013  Score=47.75  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .+-+++++|+||+|||++++.|..+-
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHH
Confidence            44689999999999999999887643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.15  E-value=9.9e-05  Score=47.64  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=17.2

Q ss_pred             eEE-EECCCCCCHHHHHHHHhc
Q 030524           11 KLV-FLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~-l~G~~~~GKSsli~~l~~   31 (175)
                      ||+ |.|++||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            454 569999999999998753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00011  Score=49.42  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ..+++.||||+|||++++.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            4689999999999999998865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00017  Score=48.74  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.11  E-value=8.2e-05  Score=50.91  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =+++++|+.|||||||++.+.+-
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            47899999999999999977663

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.09  E-value=0.00019  Score=48.62  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++||.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00011  Score=49.65  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999998874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00018  Score=49.54  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .+-+++++|+||+|||++++.+..+-
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            34589999999999999999887643

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.04  E-value=0.00018  Score=49.22  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999988743

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00026  Score=45.95  Aligned_cols=25  Identities=12%  Similarity=0.109  Sum_probs=21.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .++-|++.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            5678999999999999999987653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.00  E-value=0.00026  Score=48.37  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -++++|+.|+|||||++.+.+-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            36899999999999999988754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.99  E-value=0.00022  Score=47.78  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+++.||+|+|||+++..+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.99  E-value=0.0003  Score=47.80  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|++.||||+|||++++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45799999999999999999875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.97  E-value=0.00013  Score=48.36  Aligned_cols=27  Identities=11%  Similarity=0.164  Sum_probs=22.7

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...+..-|.+.|.||||||||.+.|..
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345667899999999999999998864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.96  E-value=0.00011  Score=49.83  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999988753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00036  Score=47.18  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -.+++.||||+||||++..+.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.93  E-value=0.00032  Score=47.71  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +-.++|.||||+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.00025  Score=49.86  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +-.|+++||||+|||.|...+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35789999999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00029  Score=46.61  Aligned_cols=22  Identities=14%  Similarity=0.214  Sum_probs=18.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -|++.|||||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5677799999999999987654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.86  E-value=0.00024  Score=48.67  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +.+.||||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00053  Score=47.50  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=21.9

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHh
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~   30 (175)
                      .+..++=|+|.|++|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            45567899999999999999987653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00048  Score=48.27  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             CCCCceeEEEECCCCCCHHHHHHHHh
Q 030524            5 SALAKYKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus         5 ~~~~~~~i~l~G~~~~GKSsli~~l~   30 (175)
                      ....++-|+|.|++||||||+.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34567999999999999999988764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.77  E-value=0.00034  Score=47.67  Aligned_cols=22  Identities=32%  Similarity=0.280  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -.|+|.|++|+|||||+.+++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3577889999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00054  Score=46.80  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +..|++.||||+|||++++.+..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            45699999999999999998876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00045  Score=45.98  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+++.||+|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999988764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00045  Score=46.18  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+++.||+|+||||++..++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999988753

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00044  Score=46.03  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .+++.||+|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999998763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00059  Score=46.32  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +-.|++.||||+|||++++.+.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34699999999999999999885

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.00048  Score=50.76  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +-+|+++||+|||||-|.++|.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00068  Score=46.26  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +-.+++.||||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            35699999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00045  Score=46.62  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -.+++.||+|+||||++..+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999987763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.57  E-value=0.0007  Score=44.32  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=18.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999998764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00093  Score=45.79  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +-.|++.||+|+|||+|++.+.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            456999999999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.00072  Score=48.93  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=19.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +=+++++|+||||||++++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            45689999999999999976654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.001  Score=43.74  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      |++-|+.||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0019  Score=42.47  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +-|+|.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            56889999999999999987654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0013  Score=42.97  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -+.+.|+||+|||+|...+..+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999887654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.27  E-value=0.0016  Score=41.65  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ..-|++.|++|+||||+.-.|..+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3568999999999999999988764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.22  E-value=0.0022  Score=41.96  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +-|++.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6689999999999999997754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.18  E-value=0.0017  Score=41.61  Aligned_cols=25  Identities=12%  Similarity=0.313  Sum_probs=21.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ..-|++.|++|+||||+.-.|..+.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            3568999999999999999988754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.17  E-value=0.0019  Score=46.28  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+-.+++.||||+|||++...+.+
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998765

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0014  Score=43.22  Aligned_cols=20  Identities=20%  Similarity=0.375  Sum_probs=16.5

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      |+|-|+.||||||++..|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66779999999998877643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0011  Score=44.19  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.1

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999997665

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.03  E-value=0.0018  Score=47.09  Aligned_cols=21  Identities=14%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |++.||+||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            788899999999999998874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.00  E-value=0.002  Score=42.58  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 030524           12 LVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~   32 (175)
                      +.+.|++|+|||.|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.00  E-value=0.0025  Score=45.63  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+-+++++||+|+|||-|..+|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            346799999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0019  Score=42.98  Aligned_cols=23  Identities=13%  Similarity=0.223  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -+.|.|+||+|||+|...+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46788999999999999987653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.99  E-value=0.0009  Score=47.28  Aligned_cols=21  Identities=19%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.92  E-value=0.0025  Score=40.49  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      ..-|++.|++|+||||+.-.++.+.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            4578999999999999998888764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.89  E-value=0.0011  Score=45.94  Aligned_cols=23  Identities=13%  Similarity=0.257  Sum_probs=16.4

Q ss_pred             CceeEEEECCCCCCHHHHHHHHh
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~   30 (175)
                      ++.-|+|.|++||||||+.+.|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            34459999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.00046  Score=44.70  Aligned_cols=18  Identities=22%  Similarity=0.577  Sum_probs=15.9

Q ss_pred             EEECCCCCCHHHHHHHHh
Q 030524           13 VFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        13 ~l~G~~~~GKSsli~~l~   30 (175)
                      +|+|+.|+||||+++++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0041  Score=43.58  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .++++||+|+|||.|...+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            688999999999999998754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.74  E-value=0.0027  Score=42.52  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -+.|.|+||+|||+|.-.++...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46788999999999999887643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.66  E-value=0.0031  Score=42.05  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      --+++.|+||+|||+|+.++..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35778899999999999988764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.54  E-value=0.0021  Score=44.54  Aligned_cols=17  Identities=29%  Similarity=0.579  Sum_probs=15.8

Q ss_pred             EEECCCCCCHHHHHHHH
Q 030524           13 VFLGDQSVGKTSIITRF   29 (175)
Q Consensus        13 ~l~G~~~~GKSsli~~l   29 (175)
                      +++|+.|+|||++++++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            68899999999999987

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0037  Score=41.68  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            467779999999999998875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0048  Score=40.44  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=18.4

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -+++.||+|+|||+++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999997665

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.41  E-value=0.0047  Score=40.25  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=21.1

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      +++-.+++.||+++|||.+++.+++
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4456788999999999999998775

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.0041  Score=44.78  Aligned_cols=18  Identities=17%  Similarity=0.464  Sum_probs=16.1

Q ss_pred             EEECCCCCCHHHHHHHHh
Q 030524           13 VFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        13 ~l~G~~~~GKSsli~~l~   30 (175)
                      +++|+.|+|||++++++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999873

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.36  E-value=0.0045  Score=41.11  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcCC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYDK   33 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~~   33 (175)
                      -+.|.|+||+|||+|...+..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999987643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0046  Score=40.76  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      |++-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            77889999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0054  Score=41.04  Aligned_cols=20  Identities=40%  Similarity=0.552  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      +++.||+|+|||+++..+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999987754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.28  E-value=0.0066  Score=42.80  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=21.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..++|.|=|+-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3578999999999999999988753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0058  Score=40.77  Aligned_cols=23  Identities=17%  Similarity=0.171  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      --+.|.|+||+|||+|.-.++..
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35778899999999999998764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.22  E-value=0.0061  Score=40.63  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.20  E-value=0.0072  Score=41.42  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=20.6

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ...-|.|.|..|+|||||+..++..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3456789999999999999987653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.16  E-value=0.0065  Score=42.58  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      +++.||||+|||.|.+.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            34469999999999999875

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.15  E-value=0.0066  Score=41.34  Aligned_cols=20  Identities=10%  Similarity=0.348  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      +++.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57889999999999888764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.06  E-value=0.0071  Score=42.55  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -++|.|=|+-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            36799999999999999998864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.01  E-value=0.0066  Score=39.95  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHhc
Q 030524           10 YKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      --+.|.|+||+|||+|...++.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3467889999999999876653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.82  E-value=0.0059  Score=42.01  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=12.9

Q ss_pred             EEEECCCCCCHHHHH
Q 030524           12 LVFLGDQSVGKTSII   26 (175)
Q Consensus        12 i~l~G~~~~GKSsli   26 (175)
                      ++|.|+||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.79  E-value=0.0053  Score=43.30  Aligned_cols=25  Identities=20%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhcC
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-++|.|=|+-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.0091  Score=43.31  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=19.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .-.++|+|++|+|||+++..++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            35699999999999999877654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.47  E-value=0.0082  Score=41.63  Aligned_cols=16  Identities=25%  Similarity=0.559  Sum_probs=13.4

Q ss_pred             eEEEECCCCCCHHHHH
Q 030524           11 KLVFLGDQSVGKTSII   26 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli   26 (175)
                      .++|.|++|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3788899999999764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.40  E-value=0.018  Score=40.22  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=17.9

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .++++||+|+|||.+...+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999987653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.012  Score=39.84  Aligned_cols=20  Identities=10%  Similarity=0.167  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 030524           12 LVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56889999999999987654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.27  E-value=0.021  Score=38.87  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=20.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhc
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      .+.-.+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3456778889999999999998765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.021  Score=33.88  Aligned_cols=27  Identities=7%  Similarity=0.199  Sum_probs=22.7

Q ss_pred             CCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         6 ~~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      ..+-+.|.+-|..|+|||+|.+.|...
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHH
Confidence            345689999999999999999988653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.016  Score=39.87  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =|++++|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            37899999999999999988763

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.40  E-value=0.023  Score=34.13  Aligned_cols=26  Identities=8%  Similarity=0.156  Sum_probs=18.5

Q ss_pred             CCCceeE-EEECCCCCCHHHHHHHHhc
Q 030524            6 ALAKYKL-VFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         6 ~~~~~~i-~l~G~~~~GKSsli~~l~~   31 (175)
                      .....++ ++.+|+|+|||.++-.++.
T Consensus         4 ~~~~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           4 VPQSFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             CCSSCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CccCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3444555 5579999999998866544

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.027  Score=39.99  Aligned_cols=19  Identities=26%  Similarity=0.468  Sum_probs=15.1

Q ss_pred             eEEEECCCCCCHHHHHHHH
Q 030524           11 KLVFLGDQSVGKTSIITRF   29 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l   29 (175)
                      -.+|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4567799999999987543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.034  Score=37.68  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=18.3

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      -+.+.|++|+|||+|+-.++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3568899999999999887754

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.28  E-value=0.044  Score=34.90  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=22.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCccccc
Q 030524           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQAT   41 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~~~~~~~~~~~~   41 (175)
                      |+|+|...||||.+..++........|..|
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT   31 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred             EEEECCCCccHHHHHHHHHhcCCCcEEEEc
Confidence            688999999999999998765433333333

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.46  E-value=0.064  Score=36.55  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      |+.++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998888654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.29  E-value=0.081  Score=35.35  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHhc
Q 030524            9 KYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         9 ~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ...|+|.|++|+||+.+...+-.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            45689999999999999987754

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.00  E-value=0.077  Score=32.18  Aligned_cols=17  Identities=35%  Similarity=0.563  Sum_probs=13.1

Q ss_pred             EEECCCCCCHHH-HHHHH
Q 030524           13 VFLGDQSVGKTS-IITRF   29 (175)
Q Consensus        13 ~l~G~~~~GKSs-li~~l   29 (175)
                      +++||-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            467999999999 55543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.11  Score=35.16  Aligned_cols=39  Identities=15%  Similarity=0.057  Sum_probs=24.8

Q ss_pred             cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcE-EEEEeCCC
Q 030524           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTD  125 (175)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nk~D  125 (175)
                      +.+++|-.. ++.++.+..+.+..+...   ++|+ -+|+||.-
T Consensus       199 t~~~lVt~p-e~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v~  238 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEVARTHLELAAI---GLKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEEES-CHHHHHHHHHHHHHHHHH---TCCCEEEEEEEEC
T ss_pred             ceeeEecCc-chhHHHHHHHHHHHHHhc---CCCceEEEEcCCc
Confidence            455665543 566777788877777654   3454 46679964

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=90.35  E-value=0.22  Score=36.88  Aligned_cols=88  Identities=16%  Similarity=0.064  Sum_probs=60.6

Q ss_pred             cCCcEEEEEEECC----------------C----hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 030524           80 RDSSVAVVVYDVA----------------S----RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA  139 (175)
Q Consensus        80 ~~~d~~i~v~d~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~  139 (175)
                      ...|++++|-.+-                |    ..++.++.++++.+..+   ++|+++++|+....  .+...+..++
T Consensus       317 l~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~Al~~G~~NL~rHIeNi~~f---GlpvVVAIN~F~tD--Td~Ei~~i~~  391 (549)
T d1eg7a_         317 FKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKF---GVPAVVAINAFPTD--TEAELNLLYE  391 (549)
T ss_dssp             CCCCEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTT---TCCEEEEEECCTTC--CHHHHHHHHH
T ss_pred             CCCceEEEEeehhhhhhcCCCChHHcCcccHHHHHHHHHHHHHHHHhhhhc---CCCeEEEeccCCcc--chhHHHHHHH
Confidence            3678888886432                1    33666777777777653   79999999999843  2333456677


Q ss_pred             HHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524          140 KSRELNVMFIETSAKAGFNIKLCCHTLNSLITV  172 (175)
Q Consensus       140 ~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~  172 (175)
                      ++.+.++..-..-+.-|+|-.++-..+.+.+..
T Consensus       392 ~~~~~g~~~a~~wa~GG~Ga~dLA~~Vv~a~e~  424 (549)
T d1eg7a_         392 LCAKAGAEVALSWAKGGEGGLELARKVLQTLES  424 (549)
T ss_dssp             HTTTSEEEEECCTTTGGGGGHHHHHHHHHHHHH
T ss_pred             HHhhcCcceeeecccCccchHHHHHHHHHHHhc
Confidence            788877765444455588889998888877643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.32  E-value=0.92  Score=28.31  Aligned_cols=101  Identities=10%  Similarity=0.077  Sum_probs=55.6

Q ss_pred             CCceeEEEECC-CCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------------
Q 030524            7 LAKYKLVFLGD-QSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------------   72 (175)
Q Consensus         7 ~~~~~i~l~G~-~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------------   72 (175)
                      .+++||.++|. .+.| ++|+-.|..+.....                 ...+.+++.|.+......             
T Consensus        22 k~~~kV~I~GA~G~Ig-~~l~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMIS-NHLLFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHH-HHHHHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHH-HHHHHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhcccccc
Confidence            46789999996 5555 555556666543321                 122345556655421100             


Q ss_pred             --------ccccccccCCcEEEEEEECCChh---hHH-------hHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524           73 --------SLIPSYIRDSSVAVVVYDVASRQ---SFL-------NTSKWIDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        73 --------~~~~~~~~~~d~~i~v~d~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                              ......++++|++|++-......   +.+       -++..-+.+..+++++..+++++|=.|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                    01122367899999987655221   111       134455555555656777888877666

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.46  E-value=0.13  Score=34.06  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=16.4

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 030524           12 LVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~   30 (175)
                      +++.||..+|||++++++.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5677999999999999863

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.17  E-value=0.14  Score=33.67  Aligned_cols=19  Identities=16%  Similarity=0.415  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 030524           12 LVFLGDQSVGKTSIITRFM   30 (175)
Q Consensus        12 i~l~G~~~~GKSsli~~l~   30 (175)
                      +++.||..+|||+++.++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6788999999999999753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.98  E-value=0.13  Score=34.47  Aligned_cols=89  Identities=12%  Similarity=0.120  Sum_probs=51.4

Q ss_pred             EEEEEEeCCCccccccc-ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCc-EEEEEeCCCCCCCCCCCH
Q 030524           58 VRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVI-IVLVGNKTDLVEKRQVSI  134 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~-~iiv~nk~D~~~~~~~~~  134 (175)
                      +.+.++|+|+.-..... .......+|.++++.+. +..++.........+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            46889999864322221 12222457888777765 56666665565555554433 2333 336679887533    23


Q ss_pred             HHHHHHHHhcCCeEEEe
Q 030524          135 EEGEAKSRELNVMFIET  151 (175)
Q Consensus       135 ~~~~~~~~~~~~~~~~~  151 (175)
                      +..+++++..+.+++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~  207 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIHF  207 (269)
T ss_dssp             HHHHHHHHHHTCCEEEE
T ss_pred             chhhhhHhhcCCeEEEE
Confidence            45666777788766554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.95  E-value=0.14  Score=34.61  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=17.5

Q ss_pred             eEEEECCCCCCHHHHHHHHhc
Q 030524           11 KLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~   31 (175)
                      -+.+.|++++|||+|+-.++.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            356889999999999877764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.57  E-value=0.14  Score=34.69  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=18.2

Q ss_pred             eEEEECCCCCCHHHHHHHHhcC
Q 030524           11 KLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        11 ~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =+-+.|++++|||+|+..++..
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            3567899999999999887753

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.19  E-value=0.12  Score=35.33  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =|+.++|++|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            47899999999999998776643

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.88  E-value=0.21  Score=32.07  Aligned_cols=24  Identities=4%  Similarity=0.012  Sum_probs=20.8

Q ss_pred             CceeEEEECCCCCCHHHHHHHHhc
Q 030524            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus         8 ~~~~i~l~G~~~~GKSsli~~l~~   31 (175)
                      ....+++.|++|+||+++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.32  E-value=2.4  Score=27.01  Aligned_cols=77  Identities=17%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCCCHH
Q 030524           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVSIE  135 (175)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nk~D~~~~~~~~~~  135 (175)
                      .+.+.++|+++.-.  ......+..+|.++++... +..++....+....+..   .++|++ ++.|+.+..+ ......
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~-~~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD-RDIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT-TCCCHH
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhcccccccc-cceecchhhHHHHHHhh---hhhhhhhhhhccccccc-chhhhH
Confidence            35688999987542  2333346679999999885 45666666666655543   356654 7789998543 333444


Q ss_pred             HHHHH
Q 030524          136 EGEAK  140 (175)
Q Consensus       136 ~~~~~  140 (175)
                      ..+++
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44433

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.81  E-value=0.16  Score=34.48  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHhcC
Q 030524           10 YKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      =|+.++|++|+|||+|+..+...
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            47889999999999998765543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.51  E-value=0.24  Score=33.18  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=14.5

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q 030524           10 YKLVFLGDQSVGKTSIITRF   29 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli~~l   29 (175)
                      -=|++.|.-|+||||+.-.|
T Consensus        21 ~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            34555599999999985443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.24  E-value=0.28  Score=30.99  Aligned_cols=15  Identities=27%  Similarity=0.339  Sum_probs=13.0

Q ss_pred             eEEEECCCCCCHHHH
Q 030524           11 KLVFLGDQSVGKTSI   25 (175)
Q Consensus        11 ~i~l~G~~~~GKSsl   25 (175)
                      ++++++|+|+|||.+
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999964

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.17  Score=34.90  Aligned_cols=16  Identities=44%  Similarity=0.661  Sum_probs=13.6

Q ss_pred             EEEECCCCCCHHHHHH
Q 030524           12 LVFLGDQSVGKTSIIT   27 (175)
Q Consensus        12 i~l~G~~~~GKSsli~   27 (175)
                      -+++|.+|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (313)
T d2olra1          17 AVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEECSTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            3688999999999863

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.79  E-value=0.26  Score=31.44  Aligned_cols=40  Identities=10%  Similarity=-0.056  Sum_probs=25.6

Q ss_pred             CCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524          114 DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (175)
Q Consensus       114 ~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (175)
                      ....-++.|+.+..  .....+..+.+.+.++++++-+-++.
T Consensus       167 ~~~~gvv~N~~~~~--~~~~~~~~~~l~~~~gi~vlG~IP~~  206 (224)
T d1byia_         167 LTLAGWVANDVTPP--GKRHAEYMTTLTRMIPAPLLGEIPWL  206 (224)
T ss_dssp             CCEEEEEEECCSSC--CTTHHHHHHHHHHHSSSCEEEEECCC
T ss_pred             CccEEEEEeCcCCC--chHHHHHHHHHHHHhCCCEEEECCCC
Confidence            34456778998842  33445556777778899887654443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.77  E-value=0.2  Score=33.87  Aligned_cols=89  Identities=11%  Similarity=0.078  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCccccccccccc-ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcE-EEEEeCCCCCCCCCCCH
Q 030524           58 VRLQLWDTAGQERFRSLIPSY-IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVII-VLVGNKTDLVEKRQVSI  134 (175)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-iiv~nk~D~~~~~~~~~  134 (175)
                      +.+.++|+|+.-......... ...+|.++++.. .+..++..+....+.+..... .+.++ .++.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            567888987643222221111 124666666655 356666666666665554332 34444 36779877422    23


Q ss_pred             HHHHHHHHhcCCeEEEe
Q 030524          135 EEGEAKSRELNVMFIET  151 (175)
Q Consensus       135 ~~~~~~~~~~~~~~~~~  151 (175)
                      +..++++..++.+++.+
T Consensus       194 ~~~~~~~~~~g~~vl~~  210 (289)
T d2afhe1         194 ELIIALANKLGTQMIHF  210 (289)
T ss_dssp             HHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHcCCeEEEE
Confidence            34566677777766554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.76  E-value=0.1  Score=30.73  Aligned_cols=16  Identities=25%  Similarity=0.110  Sum_probs=12.9

Q ss_pred             eeEEEECCCCCCHHHH
Q 030524           10 YKLVFLGDQSVGKTSI   25 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsl   25 (175)
                      -++++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4667889999999943

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.58  E-value=0.72  Score=28.06  Aligned_cols=25  Identities=4%  Similarity=0.114  Sum_probs=17.4

Q ss_pred             CceeEEEECC-CCCCHHHHHHHHhcCC
Q 030524            8 AKYKLVFLGD-QSVGKTSIITRFMYDK   33 (175)
Q Consensus         8 ~~~~i~l~G~-~~~GKSsli~~l~~~~   33 (175)
                      .++||.++|. .++|.+... .|+.+.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHH
Confidence            5789999995 677776554 455443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.29  E-value=2.5  Score=25.43  Aligned_cols=49  Identities=16%  Similarity=0.168  Sum_probs=29.8

Q ss_pred             ccccCCcEEEEEEECCCh---hh-------HHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524           77 SYIRDSSVAVVVYDVASR---QS-------FLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (175)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~iiv~nk~D  125 (175)
                      ..++++|++|+.-.....   ..       ...++.+.+.+.++++++..++++.|-+|
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            347899999998765522   11       22244555556665555666777777666

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.97  E-value=0.18  Score=34.87  Aligned_cols=16  Identities=44%  Similarity=0.661  Sum_probs=13.7

Q ss_pred             EEEECCCCCCHHHHHH
Q 030524           12 LVFLGDQSVGKTSIIT   27 (175)
Q Consensus        12 i~l~G~~~~GKSsli~   27 (175)
                      -+++|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4788999999999864

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.62  E-value=0.23  Score=34.40  Aligned_cols=16  Identities=38%  Similarity=0.619  Sum_probs=13.8

Q ss_pred             EEEECCCCCCHHHHHH
Q 030524           12 LVFLGDQSVGKTSIIT   27 (175)
Q Consensus        12 i~l~G~~~~GKSsli~   27 (175)
                      -+++|.+|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            4689999999999973

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.35  E-value=3.2  Score=25.50  Aligned_cols=55  Identities=16%  Similarity=0.080  Sum_probs=38.2

Q ss_pred             CChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEec
Q 030524           92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (175)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (175)
                      +|+.+++..-.....+...  ...|+|+++.....    ....++..+++...+++++.+.
T Consensus         3 sd~~~l~~~v~~~~~~l~~--AkrPvIi~G~g~~~----~~a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIAN--RDKVAVLVGSKLRA----AGAEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHTT--CSCEEEEECTTTTT----TTCHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHHHc--CCCEEEEECcCccc----cchHHHHHHHHHhhceeEEecc
Confidence            5666666644433333333  57999999988874    2347789999999999987553

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.89  E-value=0.16  Score=32.47  Aligned_cols=17  Identities=24%  Similarity=0.286  Sum_probs=14.4

Q ss_pred             eeEEEECCCCCCHHHHH
Q 030524           10 YKLVFLGDQSVGKTSII   26 (175)
Q Consensus        10 ~~i~l~G~~~~GKSsli   26 (175)
                      -++++.+|+|+|||...
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            46899999999999753

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.23  E-value=0.49  Score=28.16  Aligned_cols=19  Identities=32%  Similarity=0.406  Sum_probs=15.1

Q ss_pred             EEECCCCCCHHHHHHHHhc
Q 030524           13 VFLGDQSVGKTSIITRFMY   31 (175)
Q Consensus        13 ~l~G~~~~GKSsli~~l~~   31 (175)
                      +++||-.|||||-+-+...
T Consensus         6 li~GpMfsGKTt~Li~~~~   24 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRVR   24 (133)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHHHH
Confidence            4679999999998766554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=81.73  E-value=0.39  Score=29.00  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=17.9

Q ss_pred             CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (175)
Q Consensus         7 ~~~~~i~l~G~~~~GKSsli~~l~~~   32 (175)
                      .-.+.++ +||-.|||||-+-+...+
T Consensus         6 ~G~l~lI-~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1           6 HGWVEVI-VGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             CCEEEEE-ECSTTSSHHHHHHHHHHH
T ss_pred             ceeEEEE-EeccccHHHHHHHHHHHH
Confidence            3345554 799999999987666543