Citrus Sinensis ID: 030538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MTLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
Secondary Structure (PSIPRED)
cEEEcccEEEEEEcEEEcccccccEEEEEEEccccccEEEEEEcccccEEcEEEEEEEEEEEEccccEEEEEcccccccEEcccHHHcccccccccccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEEcccEEEccccEEcccEEEEccccccEEEccc
Secondary Structure Prediction (SSPRO)
cEEEccccEEEEEEEEccccccHHEEEEEHEEcccccEEEEEcccccEEcccEEccccEEEEEccccEEEEEcccccHHccccHHHHHHHHHHHHHccEEEEEEEcccEEEEEcccEEEEEEEEccccccccccccccccEEEEccEEEEEEEEEEcccEEEEEcccccEEEccc
Coil and Loop (DISEMBL)
MTLTTGKMYQVIDAEhkqrgrggamMQMELrdidtgnkvslrfgteEAVERVFVEdksftclytendtafviesetfeqlevpldvfGKAGAYLQEGMKVWLQLYDgralsgsipkRVACTIKEihastkgptvtprYRRAlldngvtvmvpsyleigeeifinpqddsyigrak
Flexible Loop (DISEMBL)
mtlttgkmyqvidaehkqrgrggaMMQMELRDIDTGNKVSLRfgteeavervfvedKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIkeihastkgptvtpryrRALLDNGVTVMVPSYLeigeeifinpqddsyigrak
Low Complexity Region (SEG)
MTLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
Disordered region (IsUnstruct)
********************************IDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINP**********
Disordered Region (DISOPRED)
MTLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA*
Disordered Region (DISEMBL)
MTLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
Disordered Region (DISPRO)
MTLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPT*TPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q2G6X5	187	Elongation factor P OS=No	yes	no	0.96	0.898	0.410	3e-35
B0UJ99	188	Elongation factor P OS=Me	yes	no	0.971	0.904	0.417	3e-33
B6INP2	188	Elongation factor P OS=Rh	yes	no	0.971	0.904	0.394	8e-33
B8IS61	188	Elongation factor P OS=Me	yes	no	0.971	0.904	0.411	2e-32
A5VAL5	187	Elongation factor P OS=Sp	yes	no	0.965	0.903	0.384	3e-32
B7KT38	188	Elongation factor P OS=Me	yes	no	0.971	0.904	0.411	6e-32
Q0BT69	187	Elongation factor P OS=Gr	yes	no	0.971	0.909	0.388	1e-31
B1ZHM8	188	Elongation factor P OS=Me	yes	no	0.971	0.904	0.411	1e-31
Q3SS37	188	Elongation factor P OS=Ni	yes	no	0.971	0.904	0.394	1e-31
Q5NQQ2	187	Elongation factor P OS=Zy	yes	no	0.965	0.903	0.378	2e-31

>sp|Q2G6X5|EFP_NOVAD Elongation factor P OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=efp PE=3 SV=1

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 110/168 (65%)

Query: 8   MYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 67
           +++V   +H Q G+GGA MQ+E++++  G K ++RF + + VERV ++ K F  LY E D
Sbjct: 20  IWKVAKTQHTQPGKGGAFMQVEMKNLIDGRKTNVRFRSADTVERVRLDTKDFQFLYAEGD 79

Query: 68  TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHA 127
               ++ ET++Q+ +P D+ G A A+LQ+GM V L++YD R +S  +P++V  TI E  A
Sbjct: 80  DLVFMDVETYDQITLPSDLLGDAAAFLQDGMTVLLEMYDERPISVQLPEQVEATIVEADA 139

Query: 128 STKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
             KG T +  Y+ A+LDNGV VMVP ++E G  I ++  + SY+G+A 
Sbjct: 140 VVKGQTASSSYKPAILDNGVRVMVPPHIESGTRIVVDVYERSYVGKAN 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)

>sp|B0UJ99|EFP_METS4 Elongation factor P OS=Methylobacterium sp. (strain 4-46) GN=efp PE=3 SV=1

 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 103/170 (60%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G++Y ++ AE+   G+G  + Q+++R I  G KVS R+ T E VER FVED+  T LY +
Sbjct: 18  GRLYVILSAENIHPGKGTPVTQLDMRRITDGVKVSERYRTTEQVERAFVEDREHTFLYKD 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            + +  +  E++EQ+ VP DV G   AYLQEGM V L L++G  L+  +P+RV   I E 
Sbjct: 78  GEGSHFMNPESYEQVAVPDDVIGDQAAYLQEGMAVMLSLHNGVPLAIELPQRVTLEIVET 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
              TKG T +  Y+ A+L NGV  +VP ++  G  + I   D SY+ RAK
Sbjct: 138 EPVTKGQTASSSYKPAVLSNGVRTLVPPHITTGTRVVIMTADGSYVERAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Methylobacterium sp. (strain 4-46) (taxid: 426117)

>sp|B6INP2|EFP_RHOCS Elongation factor P OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=efp PE=3 SV=1

 Score =  139 bits (351), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 107/170 (62%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           GK+Y +  A   Q G+GGA +Q+E++D+ TG K S+RF T+E VER  +++   + L+ E
Sbjct: 18  GKLYVITAANIVQPGKGGAFIQLEMKDVRTGTKTSMRFRTQETVERARLDEHEMSFLFAE 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D    ++ E+FEQ+ +P DV G    +LQ+GM+V +Q ++G  LS  +P+ V   I E 
Sbjct: 78  GDQYTFMDKESFEQVTIPGDVIGDGKVFLQDGMEVVVQSFEGAPLSVELPQTVTLRIVEA 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               KG T +  Y+ A+L+NGV V+VP +++ G  I +N +D +Y+ RAK
Sbjct: 138 DPVVKGQTASSSYKPAVLENGVRVLVPPHVDAGTRIVVNVEDGTYLERAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|B8IS61|EFP_METNO Elongation factor P OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=efp PE=3 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 101/170 (59%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G++Y ++ AE+   G+G  + Q+++R I  G KVS R+ T E VER FVED+  T LY++
Sbjct: 18  GRLYVILSAENIHPGKGTPVTQLDMRRITDGVKVSERYRTTEQVERAFVEDREHTFLYSD 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +    +  E++EQ+ VP DV G   AYLQEGM V L L++G  L+  +P+RV   + E 
Sbjct: 78  GEGFHFMNPESYEQVAVPEDVIGDQAAYLQEGMAVMLSLHNGVPLAIELPQRVTLEVTET 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
              TKG T +  Y+ A L NGV   VP ++  G  + I   D SY+ RAK
Sbjct: 138 EPVTKGQTASSSYKPATLSNGVRTQVPPHITAGTRVVIMTADGSYVERAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Methylobacterium nodulans (strain ORS2060 / LMG 21967) (taxid: 460265)

>sp|A5VAL5|EFP_SPHWW Elongation factor P OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=efp PE=3 SV=1

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 108/169 (63%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G +++ +  +H Q G+GGA MQ+E++++  G K ++RF + E VERV ++ K F  L+ E
Sbjct: 18  GGIWRAVKIQHTQPGKGGAYMQVEMKNLIDGRKNNVRFRSAETVERVRLDTKDFQFLFAE 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +    ++ +T+EQ+ +P D+ G A A+LQ+GM V ++LY+ R +S  +P +V  TI E 
Sbjct: 78  GEDLTFMDKDTYEQITLPRDLLGDAAAFLQDGMDVVMELYEERPISVQLPDQVEATIVEA 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
            A  KG T +  Y+ A+LDNGV VMVP ++  G  I ++  + +Y+ RA
Sbjct: 138 DAVVKGQTASSSYKPAMLDNGVRVMVPPHISSGTRIVVDVYEQTYVRRA 186

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) (taxid: 392499)

>sp|B7KT38|EFP_METC4 Elongation factor P OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=efp PE=3 SV=1

 Score =  136 bits (343), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 100/170 (58%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           GK+Y ++ AE+   G+G  + Q+++R I  G K+S R+ T E VER FVED+  T LY +
Sbjct: 18  GKLYVILTAENIHPGKGTPVTQLDMRRITDGVKISERYRTTEQVERAFVEDRDHTFLYQD 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +    +  E++EQ+ VP DV G A  YLQEGM V L  ++G  L+  +P+R+   I E 
Sbjct: 78  GEGYHFMNPESYEQIAVPADVVGDAAPYLQEGMTVTLSTHNGVPLTIELPQRMTFEIVET 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
              TKG T +  Y+ ALL NGV   VP ++  G  + I   D SY+ RAK
Sbjct: 138 EPVTKGQTASSSYKPALLSNGVKTSVPPHVSTGTRVVIMTADGSYVERAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) (taxid: 440085)

>sp|Q0BT69|EFP_GRABC Elongation factor P OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=efp PE=3 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 105/170 (61%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G+ + V+  +    G+GGA +Q+E+RD+ TGNK + R+ T + VER+  E+K +T  YT+
Sbjct: 18  GRRWTVLKQQIITPGKGGAFIQVEMRDLKTGNKTNERWRTADTVERLMTEEKDYTYSYTD 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D   +++ ETFEQ  +P ++ G A A+LQ+ M+V + L +G  ++  +P +V   I E 
Sbjct: 78  GDNLVLMDPETFEQALIPAEILGDAVAFLQDNMQVTVDLVEGDPVAIHLPAQVTLEIVEA 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               KG T +  Y+ A L NGV VMVP ++E GE I +  +D +Y+ RAK
Sbjct: 138 DPVVKGQTASSSYKPAKLSNGVRVMVPPFIEAGERIVVRTEDSTYVERAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) (taxid: 391165)

>sp|B1ZHM8|EFP_METPB Elongation factor P OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=efp PE=3 SV=1

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           GK+Y ++ AE+   G+G  + Q+++R I  G K+S R+ T E VER FVED+  T LY +
Sbjct: 18  GKLYVILTAENIHPGKGTPVTQLDMRRITDGVKISERYRTTEQVERAFVEDRDHTFLYQD 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +    +  E +EQL VP DV G A  YLQEGM V L  ++G  L+  +P+RV   I E 
Sbjct: 78  GEGYHFMNPENYEQLAVPEDVVGDAAPYLQEGMVVTLSTHNGVPLAIELPQRVTLEIVET 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
              TKG T +  Y+ A+L NGV   VP ++  G  + I   D +Y+ RAK
Sbjct: 138 EPVTKGQTASSSYKPAILSNGVKTSVPPHITTGTRVVIMTADGAYVERAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) (taxid: 441620)

>sp|Q3SS37|EFP_NITWN Elongation factor P OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=efp PE=3 SV=1

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 104/170 (61%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           GK+Y V+ AE+   G+G  + Q+E+R I  G K+S R+ T + VER  +ED +FT LY +
Sbjct: 18  GKLYVVLTAENIHPGKGTPVSQIEMRRISDGVKISERYKTTDQVERATIEDHNFTFLYED 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D    + +ET++Q++VP D+ G A  YLQE M V L L+D   ++ ++P+RV   + E 
Sbjct: 78  GDGFHFMNAETYDQVQVPKDIVGSAAPYLQENMVVKLSLHDMVPVAITLPQRVTLEVVET 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
              TKG T +  Y+ A+L NGV   VP ++ +G  + +  +D SY+ RAK
Sbjct: 138 EPVTKGQTASSSYKPAVLSNGVRTGVPPHVAVGTRVVVMTEDGSYVERAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

>sp|Q5NQQ2|EFP_ZYMMO Elongation factor P OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=efp PE=3 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 105/169 (62%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G +++    +H Q G+GGA MQ+E++++  G K ++RF + E VERV ++ K F  L+ +
Sbjct: 18  GGLWRAAKIQHTQPGKGGAYMQVEMKNLIDGRKTNVRFRSAETVERVRLDTKDFQYLFAD 77

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D    ++ ET+EQ+ +P D+ G A A+LQ+GM V ++LY+ + +S  +P++V   I E 
Sbjct: 78  GDMLTFMDKETYEQISLPKDLLGDAVAFLQDGMDVVMELYEEKPISVQLPEQVEAEIVEA 137

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
            A  KG T +  Y+ A+LDNGV VMVP ++  G  I ++     Y+ RA
Sbjct: 138 DAVVKGQTASSSYKPAILDNGVRVMVPPHITAGTRIIVDVNTQEYVKRA 186

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
297799372	257	elongation factor P (EF-P) family protei	0.965	0.657	0.680	2e-65
18416726	258	elongation factor P (EF-P) family protei	0.965	0.655	0.668	2e-64
224052898	190	predicted protein [Populus trichocarpa]	0.942	0.868	0.591	5e-57
334186934	261	elongation factor P (EF-P) family protei	0.828	0.555	0.675	1e-54
226509854	246	elongation factor P [Zea mays] gi|195624	0.965	0.686	0.591	2e-54
195643194	246	elongation factor P [Zea mays]	0.965	0.686	0.591	2e-54
242032603	246	hypothetical protein SORBIDRAFT_01g00443	0.965	0.686	0.585	3e-54
357114989	248	PREDICTED: elongation factor P-like [Bra	0.96	0.677	0.589	1e-53
30103012	247	putative translation elongation factor P	0.965	0.684	0.573	3e-53
108711647	262	Elongation factor P family protein, expr	0.965	0.645	0.573	4e-53

>gi|297799372|ref|XP_002867570.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata] gi|297313406|gb|EFH43829.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 142/169 (84%)

Query: 5   TGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
           TG+ ++V++AEHKQ+GRGGA +Q+ELRD+DTGNK++LRFG+EE+VE+VFVE+KSFTCLYT
Sbjct: 86  TGRTFRVVEAEHKQQGRGGASIQVELRDVDTGNKLNLRFGSEESVEKVFVEEKSFTCLYT 145

Query: 65  ENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKE 124
           E DTAF+IE  TFEQ+EVPLD+FGKA  YL+E MKV LQLYDGRALS SIPK + CT+ E
Sbjct: 146 EGDTAFLIEPNTFEQVEVPLDIFGKAAVYLKEEMKVQLQLYDGRALSASIPKHITCTVVE 205

Query: 125 IHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
                KG T  PRY+RALLDNG T+ VPSYLE GE+I IN +DDS++ R
Sbjct: 206 TQDPMKGLTSAPRYKRALLDNGSTIQVPSYLEAGEKIVINTEDDSFVKR 254

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416726|ref|NP_567743.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] gi|15450784|gb|AAK96663.1| putative protein [Arabidopsis thaliana] gi|20259884|gb|AAM13289.1| putative protein [Arabidopsis thaliana] gi|332659783|gb|AEE85183.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/169 (66%), Positives = 141/169 (83%)

Query: 5   TGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
           TG+ ++V++AEHKQ+GRGGA +Q+ELRD+DTGNK++LRFG+EE+VE+VFVE+KSFTCLY 
Sbjct: 87  TGRTFRVVEAEHKQQGRGGASIQVELRDVDTGNKLNLRFGSEESVEKVFVEEKSFTCLYA 146

Query: 65  ENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKE 124
           E DTA++IE  TFEQ+EVPLD+FGKA  YL+E MKV LQLYDGRALS SIPK + CT+ E
Sbjct: 147 EGDTAYLIEPNTFEQVEVPLDIFGKAAVYLKEEMKVQLQLYDGRALSASIPKHITCTVVE 206

Query: 125 IHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
                KG T  PRY+RALLDNG T+ VPSYLE GE+I IN +DDS++ R
Sbjct: 207 TQLPMKGLTSAPRYKRALLDNGSTIQVPSYLEAGEKIVINTEDDSFVKR 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052898|ref|XP_002297630.1| predicted protein [Populus trichocarpa] gi|222844888|gb|EEE82435.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 139/169 (82%), Gaps = 4/169 (2%)

Query: 5   TGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
           +GK+++V+DAEHKQRGRGGA++ +ELRD+D+GNK + RFG EEAVERVFVE++SFTCLYT
Sbjct: 26  SGKIFEVVDAEHKQRGRGGAILTLELRDVDSGNKQTFRFGAEEAVERVFVEERSFTCLYT 85

Query: 65  ENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKE 124
           E+++ ++++ E FEQLEVPL +FG+A AYL+E MKV +QL+DGR LSGSIPK+V C IKE
Sbjct: 86  EHESVYLMDLEKFEQLEVPLILFGQAAAYLKEEMKVKMQLFDGRPLSGSIPKQVTCVIKE 145

Query: 125 IHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
               T+    TPRY++A+LDNG+ + VP+Y+E GE + +N +D S++ R
Sbjct: 146 ----TQDHAATPRYKKAVLDNGLIIQVPTYIETGEAVVVNTEDGSFVTR 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186934|ref|NP_001190845.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] gi|332659784|gb|AEE85184.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 122/145 (84%)

Query: 5   TGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
           TG+ ++V++AEHKQ+GRGGA +Q+ELRD+DTGNK++LRFG+EE+VE+VFVE+KSFTCLY 
Sbjct: 87  TGRTFRVVEAEHKQQGRGGASIQVELRDVDTGNKLNLRFGSEESVEKVFVEEKSFTCLYA 146

Query: 65  ENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKE 124
           E DTA++IE  TFEQ+EVPLD+FGKA  YL+E MKV LQLYDGRALS SIPK + CT+ E
Sbjct: 147 EGDTAYLIEPNTFEQVEVPLDIFGKAAVYLKEEMKVQLQLYDGRALSASIPKHITCTVVE 206

Query: 125 IHASTKGPTVTPRYRRALLDNGVTV 149
                KG T  PRY+RALLDNG T+
Sbjct: 207 TQLPMKGLTSAPRYKRALLDNGSTI 231

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226509854|ref|NP_001149082.1| elongation factor P [Zea mays] gi|195624552|gb|ACG34106.1| elongation factor P [Zea mays]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 132/169 (78%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G +YQVI A+H  +GRGGA +Q+ELRD+DTGNK++ RF T+EA+ERVFVE+KSFT LY E
Sbjct: 78  GHIYQVIKAQHSHQGRGGATIQVELRDVDTGNKITERFRTDEALERVFVEEKSFTYLYQE 137

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            DT  ++E ETFEQLEV  ++FGKA AYL++ MKV LQ +DGR +SG++P+RV CT+ E 
Sbjct: 138 GDTVTLMEPETFEQLEVSKELFGKAAAYLKDEMKVNLQYFDGRPMSGTVPQRVTCTVVEA 197

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
             +TKG T  P+Y+R LLDNG+TV+ P ++E GE I I+  DDSY+ RA
Sbjct: 198 QPNTKGLTAQPQYKRVLLDNGLTVLAPPFIEAGENIVISTADDSYMTRA 246

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195643194|gb|ACG41065.1| elongation factor P [Zea mays]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 132/169 (78%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G +YQVI A+H  +GRGGA +Q+ELRD+DTGNK++ RF T+EA+ERVFVE+KSFT LY E
Sbjct: 78  GHIYQVIKAQHSHQGRGGATIQVELRDVDTGNKITERFRTDEALERVFVEEKSFTYLYQE 137

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            DT  ++E ETFEQLEV  ++FGKA AYL++ MKV LQ +DGR +SG++P+RV CT+ E 
Sbjct: 138 GDTVTLMEPETFEQLEVSKELFGKAAAYLKDEMKVNLQYFDGRPMSGTVPQRVTCTVVEA 197

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
             +TKG T  P+Y+R LLDNG+TV+ P ++E GE I I+  DDSY+ RA
Sbjct: 198 QPNTKGLTAQPQYKRVLLDNGLTVLAPPFIEAGENIVISTADDSYMTRA 246

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032603|ref|XP_002463696.1| hypothetical protein SORBIDRAFT_01g004430 [Sorghum bicolor] gi|241917550|gb|EER90694.1| hypothetical protein SORBIDRAFT_01g004430 [Sorghum bicolor]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 99/169 (58%), Positives = 134/169 (79%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G++YQVI A+H  +GRGGA +Q+ELRD+DTGNK++ RF T+EA+ERVFVE+KSFT LY E
Sbjct: 78  GRIYQVIKAQHSHQGRGGATIQVELRDVDTGNKLTERFRTDEALERVFVEEKSFTYLYQE 137

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            DT  ++E ETFEQLEV  ++FGKA AYL++ MKV LQ +DGR +SG++P+RV CT+ E 
Sbjct: 138 GDTVTLMEPETFEQLEVSKELFGKAAAYLKDEMKVNLQYFDGRPMSGTVPQRVTCTVVEA 197

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
             +TKG T  P+Y+R LLDNG++V+ P ++E GE+I I+  DDSY+ RA
Sbjct: 198 QPNTKGLTAQPQYKRVLLDNGLSVLAPPFIEAGEKIVISTADDSYMTRA 246

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114989|ref|XP_003559276.1| PREDICTED: elongation factor P-like [Brachypodium distachyon]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 127/168 (75%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G +YQVI A+H  +GRGGA +Q+ELRD+DTGNK+  RF T+EA+ERVFVE+KSFT LY E
Sbjct: 81  GHIYQVIKAQHSHQGRGGATIQVELRDVDTGNKIVERFRTDEALERVFVEEKSFTYLYQE 140

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D   ++E  TFEQ+EV  D+FGKA AYL++ M+V LQ YDGRA+SGS+P RV CT+ E 
Sbjct: 141 GDNVALMEPNTFEQIEVSKDLFGKAAAYLKDEMRVTLQYYDGRAVSGSVPPRVTCTVVEA 200

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
             +TKG T  P+Y+R LLDNG+TV+ P ++E GE I I   DDSY+ R
Sbjct: 201 QPNTKGLTAQPQYKRVLLDNGLTVLAPPFIEAGESIVITTVDDSYVTR 248

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30103012|gb|AAP21425.1| putative translation elongation factor P [Oryza sativa Japonica Group]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G++YQVI A+H  +GRGGA +Q+ELRD+DTGNK++ RF T+EA+ERVFVE+KSFT LY E
Sbjct: 79  GRIYQVIKAQHSHQGRGGATIQVELRDVDTGNKITERFRTDEALERVFVEEKSFTYLYQE 138

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D   ++E ETFEQLEV  ++FGK  AYL++ MKV LQ +DGR +S S+P RV CT+ E 
Sbjct: 139 GDNVTLMEPETFEQLEVSKELFGKTAAYLKDEMKVTLQYFDGRPMSASVPPRVTCTVVEA 198

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
              +KG T  P+Y+R LLDNG+TV+VP ++E GE+I ++  DDSY+ RA
Sbjct: 199 QPHSKGITAQPQYKRVLLDNGLTVLVPPFVEAGEKIVVSTADDSYMTRA 247

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108711647|gb|ABF99442.1| Elongation factor P family protein, expressed [Oryza sativa Japonica Group] gi|125546120|gb|EAY92259.1| hypothetical protein OsI_13980 [Oryza sativa Indica Group] gi|125588319|gb|EAZ28983.1| hypothetical protein OsJ_13028 [Oryza sativa Japonica Group]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G++YQVI A+H  +GRGGA +Q+ELRD+DTGNK++ RF T+EA+ERVFVE+KSFT LY E
Sbjct: 94  GRIYQVIKAQHSHQGRGGATIQVELRDVDTGNKITERFRTDEALERVFVEEKSFTYLYQE 153

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D   ++E ETFEQLEV  ++FGK  AYL++ MKV LQ +DGR +S S+P RV CT+ E 
Sbjct: 154 GDNVTLMEPETFEQLEVSKELFGKTAAYLKDEMKVTLQYFDGRPMSASVPPRVTCTVVEA 213

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
              +KG T  P+Y+R LLDNG+TV+VP ++E GE+I ++  DDSY+ RA
Sbjct: 214 QPHSKGITAQPQYKRVLLDNGLTVLVPPFVEAGEKIVVSTADDSYMTRA 262

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TIGR_CMR|SPO_1244	187	SPO_1244 "translation elongati	0.965	0.903	0.360	1.5e-28
TIGR_CMR|APH_0547	188	APH_0547 "translation elongati	0.971	0.904	0.347	6.4e-28
TIGR_CMR|NSE_0196	191	NSE_0196 "translation elongati	0.96	0.879	0.331	4.6e-25
TIGR_CMR|ECH_0777	189	ECH_0777 "translation elongati	0.96	0.888	0.319	4.2e-24
TIGR_CMR|BA_4421	185	BA_4421 "translation elongatio	0.954	0.902	0.287	1.5e-19
TIGR_CMR|CHY_1872	185	CHY_1872 "translation elongati	0.96	0.908	0.267	5.1e-19
TIGR_CMR|GSU_0465	187	GSU_0465 "translation elongati	0.937	0.877	0.307	8.6e-17
UNIPROTKB|P0A6N4	188	efp "protein chain elongation	0.971	0.904	0.288	4.7e-16
TIGR_CMR|CJE_0655	189	CJE_0655 "translation elongati	0.965	0.894	0.254	2.6e-15
UNIPROTKB|P64034	187	efp "Elongation factor P" [Myc	0.96	0.898	0.244	3.3e-15

TIGR_CMR|SPO_1244 SPO_1244 "translation elongation factor P" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 61/169 (36%), Positives = 103/169 (60%)

Query:     6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
             G ++  +  +H + G+GGA  Q+ELR++  G+K++ RF + + VERV +E K    LY  
Sbjct:    19 GGLWAAVKVDHVKPGKGGAFAQVELRNLRNGSKLNERFRSADKVERVRLEQKDQQFLYES 78

Query:    66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
             +     +++ET+EQ+E+P D+ G+   +LQ+GM + ++ Y+  AL+ ++P++V C I E 
Sbjct:    79 DGMLVFMDAETYEQIELPADLLGERRPFLQDGMTILVEFYESEALNATLPQKVTCKIVET 138

Query:   126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
                 KG T    ++ A+LDNGV VMVP ++   E I +N +   Y  RA
Sbjct:   139 EPVVKGQTAANSFKPAVLDNGVKVMVPPFVGQDEMIVVNTETMEYSERA 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|APH_0547 APH_0547 "translation elongation factor P" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 59/170 (34%), Positives = 100/170 (58%)

Query:     6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
             G +Y V+   H Q G+GGA +Q EL+++ TG K   RF  +  V R  +E+ SF  ++ +
Sbjct:    18 GALYLVVKTMHTQPGKGGAYIQAELKNLKTGAKYQERFRADGYVNRAIIEEVSFQYIFGD 77

Query:    66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
             + +  ++ +E +EQ+ +P+++ G    YLQE M + L  + G+ +S  +P  V   + E 
Sbjct:    78 SSSLTLMNTENYEQISIPVELLGDKSVYLQENMILTLLFHKGQVISAKVPDYVVLEVVEA 137

Query:   126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
              +  KG T +  Y+ A+L+NG  V VP ++++GE+I I   DD+Y  RAK
Sbjct:   138 ESVIKGQTASSSYKSAVLENGRRVSVPPFIKVGEKIVIYTPDDTYYERAK 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|NSE_0196 NSE_0196 "translation elongation factor P" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 56/169 (33%), Positives = 100/169 (59%)

Query:     8 MYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 67
             +YQV+  EH + G+GGA + +E++ ID  +KV+ RF ++E V + F+E+     L+ E D
Sbjct:    22 LYQVLKREHVKPGKGGAFVNVEMKSIDGASKVNHRFRSDEVVFKAFLEEDECHYLFKEGD 81

Query:    68 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHA 127
                ++   T+EQ  V  D+F     YL+E + V L  +  + +   +   +A T++E   
Sbjct:    82 AIVLMSLSTYEQFSVDADLFVDVDKYLKEEVVVKLLRHGDKIVGVKVQDNLAYTVEETEP 141

Query:   128 STKGPTVTPRYRRALLDNGVT-VMVPSYLEIGEEIFINPQDDSYIGRAK 175
               KG TVT  Y+ A+L+ G+  VMVP ++++G++I +  +D +Y+GR +
Sbjct:   142 YIKGQTVTSSYKPAILNGGLLKVMVPPFIKVGDQIVVKTEDGTYVGRTE 190

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|ECH_0777 ECH_0777 "translation elongation factor P" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 54/169 (31%), Positives = 94/169 (55%)

Query:     8 MYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 67
             +Y V+   H Q G+GGA +Q E++++ TG K   RF  +  ++R  V++  +  +Y +  
Sbjct:    20 LYLVVKVMHTQPGKGGAYIQAEMKNLKTGAKQYERFRADGDIKRAIVDESDYQYIYGDGS 79

Query:    68 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHA 127
                ++  +T+EQL +  D+ G    YLQ+ + + L  Y+G  +S  +P  V   + E  A
Sbjct:    80 MITIMHLKTYEQLTISKDILGDKSIYLQDNIIITLVFYNGEIISAKVPDYVTLQVVETEA 139

Query:   128 STKGPTVTPR-YRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               KG TV+   Y+ A+L+N   + VP++++ G+ I +   DDSY  RAK
Sbjct:   140 VIKGQTVSSSAYKVAMLENNQRISVPTFIKPGDRIVVYTPDDSYYERAK 188

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|BA_4421 BA_4421 "translation elongation factor P" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 48/167 (28%), Positives = 87/167 (52%)

Query:     8 MYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 67
             ++QV+D +H + G+G A ++ +LR++ TG+     F   E VE+  +E++    LY   +
Sbjct:    19 LWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKVEKAHIENRRMQYLYASGE 78

Query:    68 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHA 127
                 +++ T+EQ+E+      +   +L+E M+V +  Y G  L   +P  V   + E   
Sbjct:    79 AHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQGEVLGVELPNTVELQVTETEP 138

Query:   128 STKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
               KG T +   + A L+ G+ V VP ++  GE + IN  +  Y+ RA
Sbjct:   139 GIKGDTASNVTKPATLETGLVVQVPIFINEGEMLIINTGEGKYVSRA 185

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|CHY_1872 CHY_1872 "translation elongation factor P" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 45/168 (26%), Positives = 88/168 (52%)

Query:     6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
             G++YQVI+ +H + G+G   ++ +LR++ TG  +   F   E V +  V+ +    LY +
Sbjct:    17 GEVYQVIEFQHVKPGKGSPFVRSKLRNLMTGAVIEKTFNAGEKVPKAHVDRREVQYLYND 76

Query:    66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
              D  + ++ ET++Q  +  + FG A  Y++E   +W+  +  + +   +P  V   + + 
Sbjct:    77 GDNFYCMDMETYDQFPLTKEQFGDAINYVKENTNLWVLFFKDKVIGVELPNFVELKVIDT 136

Query:   126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
                 KG T +   + A L+ G  V VP ++E+G+ + I+ +   YI R
Sbjct:   137 PPGIKGDTASGGSKPATLETGYVVQVPFFVEVGDVLQIDTRTGQYIKR 184

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|GSU_0465 GSU_0465 "translation elongation factor P" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 51/166 (30%), Positives = 84/166 (50%)

Query:    11 VIDAEHKQRGRGGA--MMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 68
             ++D   +     GA  M++   R++ TG  +   F + + VE    E      LY + D 
Sbjct:    22 ILDVHFQSPSARGASTMVKTRYRNLLTGQVLDKTFRSGDKVEEADFERHKGQYLYADGDR 81

Query:    69 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHAS 128
                ++ ET+EQ E+  + F     YL +G +V L L+  R +S   P+ V  TI +    
Sbjct:    82 GVFMDMETYEQFEMDAESFQVIQPYLLDGTEVVLGLFQERLVSVDPPQVVELTITDTPPV 141

Query:   129 TKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
              K  T T + + A L+ G+T+ VP YLE+GE+I ++ +D  +I RA
Sbjct:   142 IKNATATAQTKEATLETGLTLQVPPYLEVGEKIKVDTRDCRFISRA 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

UNIPROTKB|P0A6N4 efp "protein chain elongation factor EF-P" [Escherichia coli K-12 (taxid:83333)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 49/170 (28%), Positives = 84/170 (49%)

Query:     6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
             G+ Y V  +E  + G+G A  +++LR + TG +V   F + ++ E   V D + T LY +
Sbjct:    19 GEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND 78

Query:    66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
              +    + +ETFEQL       G    +L +  +  + L++G+ +S + P  V   I + 
Sbjct:    79 GEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDT 138

Query:   126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
                 KG T     + A L  G  V VP +++IGE I ++ +   Y+ R K
Sbjct:   139 DPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK 188

GO:0043043 "peptide biosynthetic process" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0006414 "translational elongation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

TIGR_CMR|CJE_0655 CJE_0655 "translation elongation factor P" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 43/169 (25%), Positives = 89/169 (52%)

Query:     6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
             G  +++++ +H + G+G A ++++++    G  +   F   +  E   +EDK+   LY +
Sbjct:    19 GIPFKIVEYQHVKPGKGPAFVRIKIKSFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDD 78

Query:    66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
              +    ++++T+EQ+ +  D  G+A  ++ +GM V +  ++G+A+   +P+ V   I E 
Sbjct:    79 GENCQFMDTQTYEQVAISDDDVGEAKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIET 138

Query:   126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
               + KG T     + A L+ G  V +P ++  GE I ++     YI RA
Sbjct:   139 APNFKGDTQGSNKKPATLETGAVVQIPFHVLEGEVIRVDTVRGEYIERA 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

UNIPROTKB|P64034 efp "Elongation factor P" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 41/168 (24%), Positives = 85/168 (50%)

Query:     6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
             G+++ + + +H + G+G A ++ +L+++ +G  V   F     V+   V+ +  T LY +
Sbjct:    17 GQLWTITEFQHVKPGKGPAFVRTKLKNVLSGKVVDKTFNAGVKVDTATVDRRDTTYLYRD 76

Query:    66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
                   ++S+ +EQ  +P  + G A  +L EGM V +  ++G  L   +P  V   +   
Sbjct:    77 GSDFVFMDSQDYEQHPLPEALVGDAARFLLEGMPVQVAFHNGVPLYIELPVTVELEVTHT 136

Query:   126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
                 +G   +   + A L  G  + VP ++  G+++ ++ +D SY+GR
Sbjct:   137 EPGLQGDRSSAGTKPATLQTGAQINVPLFINTGDKLKVDSRDGSYLGR 184

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5FZ78	EFP_ACICJ	No assigned EC number	0.3705	0.9714	0.9042	yes	no
P0A3B5	EFP_AGRT5	No assigned EC number	0.3764	0.9714	0.8994	yes	no
P0A3B6	EFP_RHIRD	No assigned EC number	0.3764	0.9714	0.8994	yes	no
Q1MAF5	EFP_RHIL3	No assigned EC number	0.3941	0.9714	0.8994	yes	no
Q6N6V1	EFP_RHOPA	No assigned EC number	0.3705	0.9714	0.9042	yes	no
A6UF66	EFP_SINMW	No assigned EC number	0.3882	0.9714	0.8994	yes	no
B7KT38	EFP_METC4	No assigned EC number	0.4117	0.9714	0.9042	yes	no
A1UR93	EFP_BARBK	No assigned EC number	0.3630	0.96	0.8842	yes	no
Q28M91	EFP_JANSC	No assigned EC number	0.3529	0.9714	0.9090	yes	no
A7HUY3	EFP_PARL1	No assigned EC number	0.3786	0.9657	0.9037	yes	no
A4YTY9	EFP_BRASO	No assigned EC number	0.3882	0.9714	0.9042	yes	no
C3MCN8	EFP_RHISN	No assigned EC number	0.3941	0.9714	0.8994	yes	no
Q0BXH7	EFP_HYPNA	No assigned EC number	0.3779	0.9828	0.9052	yes	no
A7IID0	EFP_XANP2	No assigned EC number	0.3905	0.9657	0.8941	yes	no
Q2IVV2	EFP_RHOP2	No assigned EC number	0.3705	0.9714	0.9042	yes	no
B3QHV4	EFP_RHOPT	No assigned EC number	0.3705	0.9714	0.9042	yes	no
B1M2B1	EFP_METRJ	No assigned EC number	0.4	0.9714	0.9042	yes	no
Q169H6	EFP_ROSDO	No assigned EC number	0.3532	0.9542	0.8930	yes	no
Q137K5	EFP_RHOPS	No assigned EC number	0.3647	0.9714	0.9042	yes	no
A9H6E1	EFP_GLUDA	No assigned EC number	0.3764	0.9714	0.9042	yes	no
Q5NQQ2	EFP_ZYMMO	No assigned EC number	0.3786	0.9657	0.9037	yes	no
B6JHH8	EFP_OLICO	No assigned EC number	0.3882	0.9714	0.9042	yes	no
B1ZHM8	EFP_METPB	No assigned EC number	0.4117	0.9714	0.9042	yes	no
Q1QL03	EFP_NITHX	No assigned EC number	0.3882	0.9714	0.9042	yes	no
Q1GF47	EFP_RUEST	No assigned EC number	0.3470	0.9714	0.9090	yes	no
Q2GKG2	EFP_ANAPZ	No assigned EC number	0.3450	0.9771	0.9095	yes	no
Q92ST6	EFP_RHIME	No assigned EC number	0.3882	0.9714	0.8994	yes	no
Q0BT69	EFP_GRABC	No assigned EC number	0.3882	0.9714	0.9090	yes	no
B3CLX0	EFP_WOLPP	No assigned EC number	0.3450	0.9771	0.9095	yes	no
Q2NAZ6	EFP_ERYLH	No assigned EC number	0.3491	0.9657	0.9037	yes	no
Q89M07	EFP_BRAJA	No assigned EC number	0.3823	0.9714	0.9042	yes	no
B8IS61	EFP_METNO	No assigned EC number	0.4117	0.9714	0.9042	yes	no
Q2G6X5	EFP_NOVAD	No assigned EC number	0.4107	0.96	0.8983	yes	no
Q6G1Z7	EFP_BARHE	No assigned EC number	0.3668	0.9657	0.8848	yes	no
Q3SS37	EFP_NITWN	No assigned EC number	0.3941	0.9714	0.9042	yes	no
Q07MG7	EFP_RHOP5	No assigned EC number	0.3705	0.9714	0.9042	yes	no
B5ZU68	EFP_RHILW	No assigned EC number	0.3823	0.9714	0.8994	yes	no
Q5FUC7	EFP_GLUOX	No assigned EC number	0.3764	0.9714	0.9042	yes	no
Q1GTJ4	EFP_SPHAL	No assigned EC number	0.3905	0.9657	0.9037	yes	no
A9IYN9	EFP_BART1	No assigned EC number	0.3846	0.9657	0.8848	yes	no
A5VAL5	EFP_SPHWW	No assigned EC number	0.3846	0.9657	0.9037	yes	no
B0UJ99	EFP_METS4	No assigned EC number	0.4176	0.9714	0.9042	yes	no
Q6FYN9	EFP_BARQU	No assigned EC number	0.3705	0.9714	0.8947	yes	no
B6INP2	EFP_RHOCS	No assigned EC number	0.3941	0.9714	0.9042	yes	no
B8H1A0	EFP_CAUCN	No assigned EC number	0.3941	0.9714	0.9042	yes	no
Q5LU15	EFP_RUEPO	No assigned EC number	0.3588	0.9714	0.9090	yes	no
B9K2E5	EFP_AGRVS	No assigned EC number	0.3705	0.9714	0.8994	yes	no
Q2W7T6	EFP_MAGSA	No assigned EC number	0.3684	0.9771	0.9095	yes	no
A5EIT5	EFP_BRASB	No assigned EC number	0.3882	0.9714	0.9042	yes	no
Q9AA85	EFP_CAUCR	No assigned EC number	0.3941	0.9714	0.9042	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
PRK00529	186	PRK00529, PRK00529, elongation factor P; Validated	1e-51
TIGR00038	184	TIGR00038, efp, translation elongation factor P	9e-50
COG0231	131	COG0231, Efp, Translation elongation factor P (EF-	4e-26
PRK14578	187	PRK14578, PRK14578, elongation factor P; Provision	4e-20
TIGR02178	186	TIGR02178, yeiP, elongation factor P-like protein	1e-18
PRK04542	189	PRK04542, PRK04542, elongation factor P; Provision	5e-18
PRK12426	185	PRK12426, PRK12426, elongation factor P; Provision	4e-15
cd05794	56	cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Trans	2e-13
pfam09285	56	pfam09285, Elong-fact-P_C, Elongation factor P, C-	3e-13
cd04470	61	cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Trans	4e-12
smart00841	57	smart00841, Elong-fact-P_C, Elongation factor P, C	5e-11
pfam01132	55	pfam01132, EFP, Elongation factor P (EF-P) OB doma	1e-10
pfam08207	58	pfam08207, EFP_N, Elongation factor P (EF-P) KOW-l	6e-10

>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated

 Score =  163 bits (415), Expect = 1e-51
 Identities = 58/170 (34%), Positives = 96/170 (56%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G+ Y V++ EH + G+G A ++ +L+++ TG+ V   F   + VER  VE +    LY +
Sbjct: 17  GEPYVVLEFEHVKPGKGQAFVRTKLKNLLTGSVVEKTFKAGDKVERADVERREMQYLYND 76

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D    +++ET+EQ+EVP D  G A  +L+EGM+V +  Y+G  +S  +P  V   + E 
Sbjct: 77  GDGYVFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEPISVELPNFVELEVTET 136

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               KG T +   + A L+ G  V VP ++  GE+I ++ +   Y+ RAK
Sbjct: 137 EPGVKGDTASGGTKPATLETGAVVQVPLFINEGEKIKVDTRTGEYVERAK 186

Length = 186

>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P

 Score =  158 bits (402), Expect = 9e-50
 Identities = 54/169 (31%), Positives = 98/169 (57%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G+ Y V++ EH + G+G A ++++L+++ TG  +   F + E VE+  VE++    LY +
Sbjct: 16  GEPYVVLEFEHVKPGKGQAFVRVKLKNLLTGKVLEKTFRSGEKVEKADVEEREMQYLYKD 75

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D+   +++ET+EQ+E+P D+ G A  +L+E M+V +  Y+G  +   +P  V   + E 
Sbjct: 76  GDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEVSVTFYNGEPIGVELPNFVELEVTET 135

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
               KG T +   + A L+ G  V VP ++E GE+I ++ +   Y+ RA
Sbjct: 136 EPGVKGDTASGGTKPATLETGAVVQVPLFIEEGEKIKVDTRTGEYVERA 184

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria [Protein synthesis, Translation factors]. Length = 184

>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

 Score = 96.1 bits (240), Expect = 4e-26
 Identities = 41/113 (36%), Positives = 69/113 (61%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G+ Y V++  H + G+GGA ++++L+++ TG KV   F  ++ VE   VE K+   LY +
Sbjct: 19  GEPYVVVEISHVKPGKGGAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYID 78

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRV 118
            D    ++ ET+EQ E+P D  G A  +L+EGM+V + LY+G  ++  +P  V
Sbjct: 79  GDFYVFMDLETYEQYELPKDQIGDAAKFLKEGMEVEVLLYNGEPIAVELPNFV 131

Length = 131

>gnl|CDD|173042 PRK14578, PRK14578, elongation factor P; Provisional

 Score = 82.2 bits (203), Expect = 4e-20
 Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 1/155 (0%)

Query: 21  RGG-AMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQ 79
           RG   M++ + R++ TG  +   F + + VE    E      LY + D    ++ ET+EQ
Sbjct: 33  RGANTMVKTKYRNLLTGQVLEKTFRSGDKVEEADFERHKGQFLYADGDRGVFMDLETYEQ 92

Query: 80  LEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYR 139
            E+  D F     +L +G +V L L+ GR ++  +P  V  T+ +     K  T T + +
Sbjct: 93  FEMEEDAFSAIAPFLLDGTEVQLGLFQGRMVNVDLPMTVELTVTDTAPVMKNATATAQTK 152

Query: 140 RALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
            A+L+ G+ + VP YLE GE+I ++ +D  +I RA
Sbjct: 153 EAVLETGLRLQVPPYLESGEKIKVDTRDGRFISRA 187

Length = 187

>gnl|CDD|131233 TIGR02178, yeiP, elongation factor P-like protein YeiP

 Score = 78.4 bits (193), Expect = 1e-18
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 3/173 (1%)

Query: 5   TGKMYQVIDAEHKQ-RGRGGAMM-QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCL 62
            GK   + D +    +GRGG +  +  + D+ TG+KV  RF  ++ ++ V +  +  +  
Sbjct: 14  NGKTLLIKDIQRSSPQGRGGNVRYKFRMYDVPTGSKVEERFKADDMLDTVELLRREASFS 73

Query: 63  YTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK-VWLQLYDGRALSGSIPKRVACT 121
           Y + +    ++ E +       D       ++ EG+  +++QL DG  ++  +P+ V   
Sbjct: 74  YKDGEEYVFMDEEDYTPYTFDKDAIEDELLFISEGLSGMYVQLIDGSPVALELPQHVVLE 133

Query: 122 IKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
           I E     KG + + R + A L  G+ V VP Y+  GE I IN  + +++GRA
Sbjct: 134 IVETPPEIKGASASKRPKPAKLITGLVVQVPEYITTGERILINTTERAFMGRA 186

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae [Protein synthesis, Translation factors]. Length = 186

>gnl|CDD|179863 PRK04542, PRK04542, elongation factor P; Provisional

 Score = 76.9 bits (190), Expect = 5e-18
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 3/172 (1%)

Query: 6   GKMYQVIDAEHKQ-RGRGGAMM-QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLY 63
           GK+  V D + +   GRGGA + +M   D+ TG KV  RF  ++ ++ V +  +  T  Y
Sbjct: 17  GKLLLVKDIDRQSPSGRGGATLYKMRFYDVRTGLKVEERFKGDDILDTVDLTRRPVTFSY 76

Query: 64  TENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK-VWLQLYDGRALSGSIPKRVACTI 122
            + D    +++E +       D       ++ EGM  + +   DG+ ++  +P+ V   I
Sbjct: 77  IDGDEYVFMDNEDYTPYTFKKDQIEDELLFIPEGMPGMQVLTVDGQPVALELPQTVDLEI 136

Query: 123 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
            E   S KG + + R + A L  G+ + VP Y+  GE+I IN ++  ++GRA
Sbjct: 137 VETAPSIKGASASARTKPATLSTGLVIQVPEYISTGEKIRINTEERKFMGRA 188

Length = 189

>gnl|CDD|183522 PRK12426, PRK12426, elongation factor P; Provisional

 Score = 69.1 bits (169), Expect = 4e-15
 Identities = 39/174 (22%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 1   MTLTTG-KMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSF 59
           M ++T   +Y+V+        +G   +++ L+  D+   V   F   + V+    E ++ 
Sbjct: 11  MFISTKDGLYKVVSVSKVTGPKGETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNL 70

Query: 60  TCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVA 119
             LY E D    ++   ++++ +P ++      +L+ G+ V   +YDG   S  +P  + 
Sbjct: 71  EYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYDGTVFSVELPHFLE 130

Query: 120 CTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
             + +        +++   ++ALL+ GV V+VP ++EIG+ I ++ +   YI R
Sbjct: 131 LMVSKTDFPGDSLSLSGGAKKALLETGVEVLVPPFVEIGDVIKVDTRTCEYIQR 184

Length = 185

>gnl|CDD|240220 cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

 Score = 61.0 bits (149), Expect = 2e-13
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
           V   + E     KG T +   + A L+ G  V VP +++ GE+I ++ +   Y+ R
Sbjct: 1   VELEVTETEPGVKGDTASSGTKPATLETGAEVQVPLFIKEGEKIKVDTRTGEYVER 56

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P has 3 domains (domains I, II, and III). Domains II and III are S1-like domains. This CD includes domain III (the second S1 domain of EF_P). Domains II and III of have structural homology to the eIF5A domain C, suggesting that domains II and III evolved by duplication. Length = 56

>gnl|CDD|150075 pfam09285, Elong-fact-P_C, Elongation factor P, C-terminal

 Score = 60.5 bits (148), Expect = 3e-13
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
           V   + E     KG T +   + A L+ G  V VP ++E GE+I ++ +   Y+ R
Sbjct: 1   VELEVVETEPGVKGDTASSGTKPATLETGAEVQVPLFIEEGEKIKVDTRTGEYVSR 56

Members of this family of nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology. Length = 56

>gnl|CDD|239916 cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

 Score = 57.9 bits (141), Expect = 4e-12
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 55  EDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSI 114
           E++    LY + D    +++ET+EQ+E+P +  G A  +L+EGM+V +  Y+G  +   +
Sbjct: 1   EEREMQYLYKDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVIVLFYNGEPIGVEL 60

Query: 115 P 115
           P
Sbjct: 61  P 61

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P has 3 domains (domains I, II, and III). Domains II and III are S1-like domains. This CD includes domain II (the first S1 domain of EF_P). Domains II and III have structural homology to the eIF5A domain C, suggesting that domains II and III evolved by duplication. Length = 61

>gnl|CDD|214849 smart00841, Elong-fact-P_C, Elongation factor P, C-terminal

 Score = 54.8 bits (133), Expect = 5e-11
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 118 VACTIKEIHASTKGPTVTPRY-RRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
           V   + E     KG T +    + A L+ G  V VP ++  G++I ++ +   Y+ R
Sbjct: 1   VELEVTETEPGVKGDTASGGTKKPATLETGAVVQVPLFINEGDKIKVDTRTGEYVSR 57

These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology. Length = 57

>gnl|CDD|216318 pfam01132, EFP, Elongation factor P (EF-P) OB domain

 Score = 54.0 bits (131), Expect = 1e-10
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 56  DKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 110
            +    LY + D    +++ET+EQ+E+P +  G A  +L+EGM+V +  Y+G  +
Sbjct: 1   RREMQYLYNDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVTVLFYNGEPI 55

Length = 55

>gnl|CDD|203876 pfam08207, EFP_N, Elongation factor P (EF-P) KOW-like domain

 Score = 52.0 bits (126), Expect = 6e-10
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 6  GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAV 49
          G+ Y V++ EH + G+G A ++ +L+++ TG KV   F + + V
Sbjct: 15 GEPYVVLEFEHVKPGKGQAFVRTKLKNLRTGAKVEKTFKSGDKV 58

Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
PRK12426	185	elongation factor P; Provisional	100.0
PRK14578	187	elongation factor P; Provisional	100.0
PRK04542	189	elongation factor P; Provisional	100.0
TIGR02178	186	yeiP elongation factor P-like protein YeiP. This m	100.0
TIGR00038	184	efp translation elongation factor P. function: inv	100.0
PRK00529	186	elongation factor P; Validated	100.0
COG0231	131	Efp Translation elongation factor P (EF-P)/transla	100.0
TIGR00037	130	eIF_5A translation initiation factor eIF-5A. Obser	100.0
PRK03999	129	translation initiation factor IF-5A; Provisional	100.0
PLN03107	159	eukaryotic translation initiation factor 5A; Provi	99.97
PF09285	56	Elong-fact-P_C: Elongation factor P, C-terminal; I	99.96
cd05794	56	S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elo	99.96
smart00841	56	Elong-fact-P_C Elongation factor P, C-terminal. Th	99.96
cd04470	61	S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo	99.92
PF01132	55	EFP: Elongation factor P (EF-P) OB domain; InterPr	99.88
cd04463	55	S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin	99.77
PF08207	58	EFP_N: Elongation factor P (EF-P) KOW-like domain;	99.75
PTZ00328	166	eukaryotic initiation factor 5a; Provisional	99.72
KOG3271	156	consensus Translation initiation factor 5A (eIF-5A	99.53
cd04467	57	S1_aIF5A S1_aIF5A: Archaeal translation Initiation	98.35
PF01287	69	eIF-5a: Eukaryotic elongation factor 5A hypusine,	97.28
COG1499	355	NMD3 NMD protein affecting ribosome stability and	95.52
cd04468	69	S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati	94.21
cd04469	75	S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain.	84.8
PF00900	77	Ribosomal_S4e: Ribosomal family S4e; InterPro: IPR	82.81

>PRK12426 elongation factor P; Provisional

Probab=100.00  E-value=4.2e-77  Score=481.01  Aligned_cols=173  Identities=22%  Similarity=0.447  Sum_probs=171.6

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |++||+||.|++++|+|||||+|++|+|||||.||+++++||||+|++|.|+++++++||||.||+.|+|||++||||++
T Consensus        13 i~~~g~~~~V~~~~h~kPGkg~A~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~~FMd~etyeQi~   92 (185)
T PRK12426         13 ISTKDGLYKVVSVSKVTGPKGETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEYLFLDLGNYDKIY   92 (185)
T ss_pred             EEECCEEEEEEEEEEecCCCCceEEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeEEEecCCCceEEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538           82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI  161 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I  161 (175)
                      |+++.+||+.+||+|||+|.++||+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus        93 i~~~~lgd~~~fL~e~~~v~v~~~~~~~i~v~lP~~V~l~V~etep~~kgdTat~~~KpAtLeTG~~V~VP~FI~~Gd~I  172 (185)
T PRK12426         93 IPKEIMKDNFLFLKAGVTVSALVYDGTVFSVELPHFLELMVSKTDFPGDSLSLSGGAKKALLETGVEVLVPPFVEIGDVI  172 (185)
T ss_pred             eCHHHhhhHHhhccCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCcccCCCcccEEEcCCCEEEeCCcccCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeeec
Q 030538          162 FINPQDDSYIGRA  174 (175)
Q Consensus       162 ~V~T~~g~Y~~R~  174 (175)
                      +||||+|+|++||
T Consensus       173 kVdT~~geY~~R~  185 (185)
T PRK12426        173 KVDTRTCEYIQRV  185 (185)
T ss_pred             EEECCCCeEEeeC
Confidence            9999999999997

>PRK14578 elongation factor P; Provisional

Probab=100.00  E-value=1.2e-74  Score=467.78  Aligned_cols=173  Identities=28%  Similarity=0.487  Sum_probs=170.4

Q ss_pred             eEEcCcEEEEEEeEEecCCCC--CcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcce
Q 030538            2 TLTTGKMYQVIDAEHKQRGRG--GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQ   79 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG--~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeq   79 (175)
                      |++||+||+|++++|+|||+|  +|++|+|||||.||++++++|+++|++|.|+++++++||||.||+.|||||+|||||
T Consensus        13 i~~dg~~~~V~~~~~~kpg~~g~~a~vr~klknl~tG~~~e~tf~s~d~ve~a~ve~~~~qylY~dg~~~~FMD~etyEQ   92 (187)
T PRK14578         13 IQLDGAPCLLLDVTFQSPSARGANTMVKTKYRNLLTGQVLEKTFRSGDKVEEADFERHKGQFLYADGDRGVFMDLETYEQ   92 (187)
T ss_pred             EEECCEEEEEEEEEEEcCCCCCCceEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEeEeEEEEeCCCEEEEecCCCcEE
Confidence            688999999999999999987  559999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCC
Q 030538           80 LEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGE  159 (175)
Q Consensus        80 i~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd  159 (175)
                      ++||++.+|++.+||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||
T Consensus        93 ~~i~~~~~g~~~~fL~e~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~KGdT~t~~~KpA~leTG~~v~VP~FI~~Gd  172 (187)
T PRK14578         93 FEMEEDAFSAIAPFLLDGTEVQLGLFQGRMVNVDLPMTVELTVTDTAPVMKNATATAQTKEAVLETGLRLQVPPYLESGE  172 (187)
T ss_pred             EEecHHHhhhHHhhccCCCEEEEEEECCEEEEEECCCEEEEEEEECCCccccCccCCCcceEEEcCCCEEEeCCcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeeec
Q 030538          160 EIFINPQDDSYIGRA  174 (175)
Q Consensus       160 ~I~V~T~~g~Y~~R~  174 (175)
                      +|+||||||+|++||
T Consensus       173 ~I~VdT~~g~Y~~R~  187 (187)
T PRK14578        173 KIKVDTRDGRFISRA  187 (187)
T ss_pred             EEEEECCCCcEEeeC
Confidence            999999999999997

>PRK04542 elongation factor P; Provisional

Probab=100.00  E-value=1.1e-74  Score=468.48  Aligned_cols=174  Identities=28%  Similarity=0.507  Sum_probs=170.9

Q ss_pred             eEEcCcEEEEEEeEEecC-CCCC-cEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcce
Q 030538            2 TLTTGKMYQVIDAEHKQR-GRGG-AMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQ   79 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kp-GkG~-A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeq   79 (175)
                      |+++|+||+|++++|+|| |||+ |++|+|||||.||+++++||||+|++|.|++++++|||||.||+.|+|||++||||
T Consensus        13 i~~~g~~~~V~~~~h~kp~Gkg~~a~vr~klknl~tG~~~e~tfrs~ekve~a~~~~~~~qylY~dg~~~~FMd~etyEQ   92 (189)
T PRK04542         13 VEYNGKLLLVKDIDRQSPSGRGGATLYKMRFYDVRTGLKVEERFKGDDILDTVDLTRRPVTFSYIDGDEYVFMDNEDYTP   92 (189)
T ss_pred             EEECCEEEEEEEEEEECCCCCCcceEEEEEEEEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCEEEEecCCCceE
Confidence            789999999999999999 7984 59999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCchhhhchhhccCCCCE-EEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCC
Q 030538           80 LEVPLDVFGKAGAYLQEGMK-VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIG  158 (175)
Q Consensus        80 i~l~~~~lgd~~~~L~eg~~-v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~G  158 (175)
                      ++||++.+||+.+||+|||+ |.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++|
T Consensus        93 ~~i~~~~lgd~~~~L~e~~~~v~v~~~~~~~i~v~lP~~V~l~V~etep~~kGdT~~~~~KpAtLetG~~v~VP~FI~~G  172 (189)
T PRK04542         93 YTFKKDQIEDELLFIPEGMPGMQVLTVDGQPVALELPQTVDLEIVETAPSIKGASASARTKPATLSTGLVIQVPEYISTG  172 (189)
T ss_pred             EEECHHHhhhHhhhhhcCCEEEEEEEECCEEEEEECCCEEEEEEEECCCCccccccCCCCccEEEcCCCEEEeCCcccCC
Confidence            99999999999999999998 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEECCCCceeeecC
Q 030538          159 EEIFINPQDDSYIGRAK  175 (175)
Q Consensus       159 d~I~V~T~~g~Y~~R~~  175 (175)
                      |+|+||||+|+|++||.
T Consensus       173 d~I~VdT~tgeYv~R~~  189 (189)
T PRK04542        173 EKIRINTEERKFMGRAD  189 (189)
T ss_pred             CEEEEECCCCcEEeecC
Confidence            99999999999999984

>TIGR02178 yeiP elongation factor P-like protein YeiP

Probab=100.00  E-value=2e-74  Score=465.95  Aligned_cols=173  Identities=25%  Similarity=0.462  Sum_probs=169.7

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCc--EEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcce
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGA--MMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQ   79 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A--~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeq   79 (175)
                      |++||+||+|++++|+|||+|+|  ++|+|||||.||+++++||||+|++|.|+++++++||||.||+.|+|||++||||
T Consensus        11 i~~dg~~~~V~~~~~~kpg~~ga~~~vk~klknl~tG~~~e~tf~s~e~ve~a~le~~~~qylY~dg~~~~FMD~etyEQ   90 (186)
T TIGR02178        11 VEYNGKTLLIKDIQRSSPQGRGGNVRYKFRMYDVPTGSKVEERFKADDMLDTVELLRREASFSYKDGEEYVFMDEEDYTP   90 (186)
T ss_pred             EEECCEEEEEEEEEEECCCCCCCcEEEEEEEeEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCeEEEccCCCcEE
Confidence            78999999999999999987666  8999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCchhhhchhhccCCCCE-EEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCC
Q 030538           80 LEVPLDVFGKAGAYLQEGMK-VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIG  158 (175)
Q Consensus        80 i~l~~~~lgd~~~~L~eg~~-v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~G  158 (175)
                      ++|+++.+||+.+||+|||+ |.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++|
T Consensus        91 ~~i~~~~lgd~~~fL~e~~~~v~v~~~~~~~i~v~lP~~V~l~V~etep~~KGdT~~~~~KpA~LeTG~~v~VP~FI~~G  170 (186)
T TIGR02178        91 YTFDKDAIEDELLFISEGLSGMYVQLIDGSPVALELPQHVVLEIVETPPEIKGASASKRPKPAKLITGLVVQVPEYITTG  170 (186)
T ss_pred             EEeCHHHhhhhhhhhhCCCEEEEEEEECCEEEEEECCCEEEEEEEECCCCcccccCCCCcccEEEcCCCEEEeCCeecCC
Confidence            99999999999999999997 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEECCCCceeeec
Q 030538          159 EEIFINPQDDSYIGRA  174 (175)
Q Consensus       159 d~I~V~T~~g~Y~~R~  174 (175)
                      |+|+||||||+|++||
T Consensus       171 d~IkVdTrtg~Y~~R~  186 (186)
T TIGR02178       171 ERILINTTERAFMGRA  186 (186)
T ss_pred             CEEEEECCCCcEEccC
Confidence            9999999999999997

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.

>TIGR00038 efp translation elongation factor P

Probab=100.00  E-value=6.1e-72  Score=451.54  Aligned_cols=173  Identities=31%  Similarity=0.592  Sum_probs=171.7

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |+++|+||+|++++|+|||||+|++|++||||.||++++++|+++++++.+.++++++||||.||+.|+|||+|||||++
T Consensus        12 I~~~g~~~~V~~~~~~kpGkg~A~~rvk~knL~tG~~~e~~f~~~~kve~~~~e~~~~q~ly~dgd~~~fMD~etyeq~~   91 (184)
T TIGR00038        12 IELDGEPYVVLEFEHVKPGKGQAFVRVKLKNLLTGKVLEKTFRSGEKVEKADVEEREMQYLYKDGDSYVFMDTETYEQIE   91 (184)
T ss_pred             EEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEcccEEeEEEEEEEECCCEEEEeCCCCccceE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538           82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI  161 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I  161 (175)
                      |+++.+|++.+||+|||+|.+.||+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus        92 i~~~~l~~~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fi~~Gd~I  171 (184)
T TIGR00038        92 LPKDLLGDAAKFLKENMEVSVTFYNGEPIGVELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFIEEGEKI  171 (184)
T ss_pred             cCHHHHHHHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCccccccCCCcccEEEcCCCEEEeCCcccCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeeec
Q 030538          162 FINPQDDSYIGRA  174 (175)
Q Consensus       162 ~V~T~~g~Y~~R~  174 (175)
                      +|||++|+|++||
T Consensus       172 ~v~T~~g~y~~R~  184 (184)
T TIGR00038       172 KVDTRTGEYVERA  184 (184)
T ss_pred             EEECCCCcEEecC
Confidence            9999999999997

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.

>PRK00529 elongation factor P; Validated

Probab=100.00  E-value=8.5e-72  Score=451.32  Aligned_cols=174  Identities=33%  Similarity=0.588  Sum_probs=172.5

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |+++|+||+|++++|+|||||+|++|+++|||.||++++++|+++++++.+.++++++||||.||+.|+|||+|||||++
T Consensus        13 I~~~g~~~~V~~~~~~kpGkg~A~vrvk~knL~tG~~~e~~f~~~e~ve~~~ve~~~~q~ly~dgd~~~fMD~etyeq~~   92 (186)
T PRK00529         13 IEIDGEPYVVLEFEHVKPGKGQAFVRTKLKNLLTGSVVEKTFKAGDKVERADVERREMQYLYNDGDGYVFMDTETYEQIE   92 (186)
T ss_pred             EEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCeEEEEeCCCCEEEeccEEeEEEEEEEECCCEEEEecCCCceeeE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538           82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI  161 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I  161 (175)
                      ||++.+|++.+||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus        93 l~~~~lg~~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I  172 (186)
T PRK00529         93 VPADQVGDAAKFLKEGMEVTVVFYNGEPISVELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFINEGEKI  172 (186)
T ss_pred             cCHHHhHHHHhhccCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCccCcccCCCcccEEEcCCCEEEeCCeecCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeeecC
Q 030538          162 FINPQDDSYIGRAK  175 (175)
Q Consensus       162 ~V~T~~g~Y~~R~~  175 (175)
                      +|||++|+|++|||
T Consensus       173 ~v~T~~g~y~~R~~  186 (186)
T PRK00529        173 KVDTRTGEYVERAK  186 (186)
T ss_pred             EEECCCCcEEeecC
Confidence            99999999999996

>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-44  Score=276.00  Aligned_cols=117  Identities=35%  Similarity=0.642  Sum_probs=115.3

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |++||+||+|++++|+|||||+|++|+++|||+||++++.+|+++++++.|.++++++||||.||+.|+|||+|||||++
T Consensus        15 i~~dg~~~~V~~~~~~KpGKg~a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~~~~FMD~etyeq~~   94 (131)
T COG0231          15 IVIDGEPYVVVEISHVKPGKGGAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGDFYVFMDLETYEQYE   94 (131)
T ss_pred             EEECCeEEEEEEEEEccCCCCCcEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCCeEEEccCCCceEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeE
Q 030538           82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRV  118 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v  118 (175)
                      |+.+.+|++.+||+|||+|.+.+|+|++++++||++|
T Consensus        95 v~~~~~~d~~~~l~eg~~v~v~~~~g~~i~v~lP~~v  131 (131)
T COG0231          95 LPKDQIGDAAKFLKEGMEVEVLLYNGEPIAVELPNFV  131 (131)
T ss_pred             ecchhhhhHHHhcCCCCEEEEEEECCEEEEEECCCCC
Confidence            9999999999999999999999999999999999975

>TIGR00037 eIF_5A translation initiation factor eIF-5A

Probab=100.00  E-value=1.8e-35  Score=227.29  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=102.4

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL   80 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi   80 (175)
                      ++++|+||+|++++|+|||| |+|++|+++|||+||++++++|+|++++|.|.++++++||||.||+.|+|||+|||||+
T Consensus        18 i~~~g~p~~V~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~s~~~ve~~~ve~~~~qylY~dg~~~~fMd~etyeq~   97 (130)
T TIGR00037        18 VVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSPSTSKVEVPIVDRREYQVLAIMGGMVQLMDLDTYETD   97 (130)
T ss_pred             EEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEEEEEEEEecCCEEEEEcCCCcEEE
Confidence            67899999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCchhhhchhhccCCCCEEEEEEECCEEE
Q 030538           81 EVPLDVFGKAGAYLQEGMKVWLQLYDGRAL  110 (175)
Q Consensus        81 ~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i  110 (175)
                      .|+.+.  +..+||+||++|.++-.-|+..
T Consensus        98 ~i~~~~--~~~~~Lke~~~V~v~~~~g~~~  125 (130)
T TIGR00037        98 ELPIPE--ELGDSLEPGFEVEYIEAMGQEK  125 (130)
T ss_pred             EecCCh--hHHHHhhcCCEEEEEecCCeEE
Confidence            999986  8999999999999988777643

Observed in eukaryotes and archaea.

>PRK03999 translation initiation factor IF-5A; Provisional

Probab=100.00  E-value=1.4e-33  Score=216.58  Aligned_cols=105  Identities=24%  Similarity=0.331  Sum_probs=99.7

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL   80 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi   80 (175)
                      |.++|+||+|++++|+|||| |+|++|+++|||.||++++.+|++++++|.+.++++++||||.||+.|+|||+|||||+
T Consensus        17 i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~d~~e~~~ve~~~~qylY~dg~~~~fMd~eTyeq~   96 (129)
T PRK03999         17 VVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVPIIEKKTGQVLSIMGDVVQLMDLETYETF   96 (129)
T ss_pred             EEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCCCceeeeeEEeEEEEEEEecCCEEEEecCCCceEE
Confidence            67899999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCchhhhchhhccCCCCEEEEEEECCE
Q 030538           81 EVPLDVFGKAGAYLQEGMKVWLQLYDGR  108 (175)
Q Consensus        81 ~l~~~~lgd~~~~L~eg~~v~v~~~~~~  108 (175)
                      +|+++  ||+..||+||++|.++---|+
T Consensus        97 ~i~~~--~d~~~~l~eg~~v~v~~~~g~  122 (129)
T PRK03999         97 EIPIP--EELKDKLEPGVEVEYWEAMGR  122 (129)
T ss_pred             EecCC--hhHHhhCcCCCEEEEEhhCCe
Confidence            99998  999999999999887654443

>PLN03107 eukaryotic translation initiation factor 5A; Provisional

Probab=99.97  E-value=3.7e-30  Score=203.75  Aligned_cols=105  Identities=16%  Similarity=0.268  Sum_probs=95.3

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEE-EEEeC--CCc
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA-FVIES--ETF   77 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~-vFMD~--ety   77 (175)
                      |+++|+||+|++++|+|||| |+|++|+++|||+||++++.+|+|+++++.|+++++++||||.||+.| +|||+  ++|
T Consensus        32 I~~~g~pc~V~e~~~~KpGKHG~A~vr~k~knl~TG~k~e~~f~s~~~ve~~~ve~~~~qyly~dgd~y~~fMD~~get~  111 (159)
T PLN03107         32 IVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLMDESGNTK  111 (159)
T ss_pred             EEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEecCCCEEEEEEEEEEEEEEEEEcCCceEEEEcCCCCcc
Confidence            68999999999999999999 999999999999999999999999999999999999999999999995 99999  699


Q ss_pred             ceeecCc---hhhhchhhccCCCCEEEEEEEC
Q 030538           78 EQLEVPL---DVFGKAGAYLQEGMKVWLQLYD  106 (175)
Q Consensus        78 eqi~l~~---~~lgd~~~~L~eg~~v~v~~~~  106 (175)
                      ||+.||+   ++......+..+|.++.|.+|.
T Consensus       112 eqi~v~~~~~el~~~i~~~f~~g~~~~v~v~~  143 (159)
T PLN03107        112 DDLKLPTEDDTLAEQIKDGFDEGKDLVVTVMS  143 (159)
T ss_pred             eeEEccCcchHHHHHHHHHHhCCCeEEEEEEe
Confidence            9999986   4344444566789997777775

>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []

Probab=99.96  E-value=5.3e-29  Score=165.34  Aligned_cols=56  Identities=32%  Similarity=0.629  Sum_probs=50.3

Q ss_pred             EEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEEEEECCCCceeee
Q 030538          118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR  173 (175)
Q Consensus       118 v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I~V~T~~g~Y~~R  173 (175)
                      |+|+|++|+|++||||+++++|+|+||||++|+||+||++||+|+|||++|+|++|
T Consensus         1 V~l~V~etep~~kg~t~~~~~K~A~letG~~i~VP~FI~~Gd~I~VdT~~g~Yv~R   56 (56)
T PF09285_consen    1 VELEVVETEPAVKGDTASSSYKPATLETGAEIQVPLFIEEGDKIKVDTRDGSYVER   56 (56)
T ss_dssp             EEEEEEEE-SSSTTSSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCccCcccCCCccEEEEcCCCEEEccceecCCCEEEEECCCCeEeCC
Confidence            68999999999999999999999999999999999999999999999999999998

; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.

>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

Probab=99.96  E-value=3.9e-29  Score=166.01  Aligned_cols=56  Identities=29%  Similarity=0.526  Sum_probs=55.0

Q ss_pred             EEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEEEEECCCCceeee
Q 030538          118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR  173 (175)
Q Consensus       118 v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I~V~T~~g~Y~~R  173 (175)
                      |+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|
T Consensus         1 v~l~V~etep~~kG~T~~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~R   56 (56)
T cd05794           1 VELEVTETEPGVKGDTASSGTKPATLETGAEVQVPLFIKEGEKIKVDTRTGEYVER   56 (56)
T ss_pred             CEEEEEECCCCccccccCCCcceEEECCCCEEEcCCeecCCCEEEEECCCCcEecC
Confidence            58999999999999999999999999999999999999999999999999999998

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P

>smart00841 Elong-fact-P_C Elongation factor P, C-terminal

Probab=99.96  E-value=3.7e-29  Score=166.10  Aligned_cols=56  Identities=27%  Similarity=0.515  Sum_probs=55.0

Q ss_pred             EEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEEEEECCCCceeee
Q 030538          118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR  173 (175)
Q Consensus       118 v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I~V~T~~g~Y~~R  173 (175)
                      |+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|
T Consensus         1 V~l~V~etep~vkG~T~~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~R   56 (56)
T smart00841        1 VELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFINEGDKIKVDTRTGEYVSR   56 (56)
T ss_pred             CEEEEEECCCCccccccCCCcceEEECCCCEEEcCCcccCCCEEEEECCCCcEEcC
Confidence            58999999999999999999999999999999999999999999999999999998

These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.

>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

Probab=99.92  E-value=2.4e-25  Score=150.52  Aligned_cols=61  Identities=33%  Similarity=0.758  Sum_probs=59.8

Q ss_pred             EeeEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhhccCCCCEEEEEEECCEEEEEeCC
Q 030538           55 EDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIP  115 (175)
Q Consensus        55 e~~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP  115 (175)
                      ++|++||||.||+.|||||++||||++|+++.+|++.+||+|||+|.+++|+|+||+|+||
T Consensus         1 e~~~~qylY~dg~~~~FMd~etyeQ~~i~~~~igd~~~~L~e~~~v~v~~~~~~~i~v~lP   61 (61)
T cd04470           1 EEREMQYLYKDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVIVLFYNGEPIGVELP   61 (61)
T ss_pred             CCceEEEEEeCCCEEEEeCCCCceEEEECHHHhhhHHhhCcCCCEEEEEEECCEEEEEECc
Confidence            4789999999999999999999999999999999999999999999999999999999999

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P

>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []

Probab=99.88  E-value=6.8e-23  Score=135.78  Aligned_cols=55  Identities=36%  Similarity=0.748  Sum_probs=50.0

Q ss_pred             eeEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhhccCCCCEEEEEEECCEEE
Q 030538           56 DKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL  110 (175)
Q Consensus        56 ~~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i  110 (175)
                      +|++||||.||+.|||||++||||++|+++.+|++.+||+||++|.+.+|+|+||
T Consensus         1 ~r~~qylY~dgd~~~FMd~etyeQi~v~~~~~g~~~~~L~eg~~v~v~~~~~~~I   55 (55)
T PF01132_consen    1 RREMQYLYKDGDNYVFMDTETYEQIEVPKDQLGDALKFLKEGMEVQVLFYEGKPI   55 (55)
T ss_dssp             EEEEEEEEEESSEEEEEETTT--EEEEEHHHHTTTGCC--TTEEEEEEEETTEEE
T ss_pred             CceEEEEEeCCCEEEEecCCCceEEEecHHHhChHHhhCcCCCEEEEEEECCEEC
Confidence            6899999999999999999999999999999999999999999999999999997

Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.

>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain

Probab=99.77  E-value=8.8e-19  Score=115.44  Aligned_cols=55  Identities=18%  Similarity=0.269  Sum_probs=51.7

Q ss_pred             eEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhhccCCCCEEEEEEECCEEEEE
Q 030538           57 KSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG  112 (175)
Q Consensus        57 ~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v  112 (175)
                      |++||||.||+.|+|||++||||++++++.+ ++.+||+||++|.+.+|+|+|+++
T Consensus         1 ~~~qylY~dg~~~~fMd~etyeq~~v~~~~~-~~~~~l~eg~~v~v~~~~g~~i~~   55 (55)
T cd04463           1 RELQVLDIQGSKPVTMDLETYEVVQVPPPVD-QSFESFEPGEVVLVDTRTGQYVGV   55 (55)
T ss_pred             CCEEEEEcCCCEeEEecCCCceEEEeCHHHh-hHHhhCCCCCEEEEEEECCEEEeC
Confidence            5799999999999999999999999999985 599999999999999999999874

The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.

>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors

Probab=99.75  E-value=3.7e-18  Score=114.18  Aligned_cols=48  Identities=33%  Similarity=0.650  Sum_probs=45.9

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcE
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAV   49 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkv   49 (175)
                      |++||+||+|++++|++||||+|+||+|||||.||+++|++|+++|+|
T Consensus        11 i~~~g~~~~V~~~~~~k~gkg~a~v~~klknl~tG~~~e~tf~s~d~v   58 (58)
T PF08207_consen   11 IEIDGEPYVVLDFQHVKPGKGGAFVRVKLKNLRTGSKVEKTFRSGDKV   58 (58)
T ss_dssp             EEETTEEEEEEEEEEECCTTSSSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred             EEECCEEEEEEEEEEECCCCCCeEEEEEEEECCCCCEEEEEECCCCcC
Confidence            789999999999999999999999999999999999999999999986

; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.

>PTZ00328 eukaryotic initiation factor 5a; Provisional

Probab=99.72  E-value=1.6e-16  Score=126.12  Aligned_cols=105  Identities=20%  Similarity=0.307  Sum_probs=92.4

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCC-------EEEEEe
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND-------TAFVIE   73 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd-------~~vFMD   73 (175)
                      ++++|+||+|++++.+|||| |+|.+++...+|+||++.+...++.++++.+.++|++||.+..++|       +..+||
T Consensus        34 vvIkGrPCKIveistSKtGKHGhAK~~ivaidIFTgkK~edi~Ps~hnv~VP~V~r~~yqli~I~~d~~~~~~g~v~LMd  113 (166)
T PTZ00328         34 VCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPSLPAHLSLMD  113 (166)
T ss_pred             EEECCeeeEEEEEecCCCCcCCceEEEEEEEecCCCCEEeeecCccceeEeeeEEeeEEEEEEEcCCCcccccceEEEEc
Confidence            78999999999999999999 9999999999999999999999999999999999999999999886       478999


Q ss_pred             CCCcceee--cCc-hhhhc-hhhccCCCCEEEEEEEC
Q 030538           74 SETFEQLE--VPL-DVFGK-AGAYLQEGMKVWLQLYD  106 (175)
Q Consensus        74 ~etyeqi~--l~~-~~lgd-~~~~L~eg~~v~v~~~~  106 (175)
                      .+.|+-..  ||. +.|+. ....+.+|.+|.|.+|.
T Consensus       114 ~~g~~k~dl~lp~~~el~~~ik~~f~~g~ev~v~vi~  150 (166)
T PTZ00328        114 DEGESREDLDMPPDAALATQIKEQFDSGKEVLVVVVS  150 (166)
T ss_pred             CCCCeeecccCCChhHHHHHHHHHhcCCCeEEEEEEh
Confidence            98877655  553 33332 45677999999988886

>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=5.3e-14  Score=108.87  Aligned_cols=101  Identities=17%  Similarity=0.287  Sum_probs=90.5

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeC--CCcc
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIES--ETFE   78 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~--etye   78 (175)
                      |+++|+||+|++.+.+|.|| |+|.+.+..++|+||++.|.-++|++++++++++|++||.+-.+++..-|||+  ++-+
T Consensus        32 vviK~rpckivEmSTsKtGKHGhAKvh~vaidifTgkk~edI~psthn~dVp~vkr~~yqLidIsd~~~sl~t~sG~~kd  111 (156)
T KOG3271|consen   32 VVIKGRPCKIVEMSTSKTGKHGHAKVHIVAIDIFTGKKLEDICPSTHNMDVPVVKRVDYQLIDISDGYLSLMTDSGETKD  111 (156)
T ss_pred             EEEcCCCceEEEeecccCCcCCceEEEEEEEEeecCcccccccCCCCccccCccccceeEEEEecCCeEEEEcCCCCcch
Confidence            68999999999999999999 99999999999999999999999999999999999999999999998889998  5778


Q ss_pred             eeecCchhhhchhh-ccCCCCEEEE
Q 030538           79 QLEVPLDVFGKAGA-YLQEGMKVWL  102 (175)
Q Consensus        79 qi~l~~~~lgd~~~-~L~eg~~v~v  102 (175)
                      ++.+|.+.++.++. -+.+|..+.+
T Consensus       112 Dlklp~~el~~~i~~~~e~g~dl~v  136 (156)
T KOG3271|consen  112 DLKLPEGELGNQIRQGFEEGKDLLV  136 (156)
T ss_pred             hccCcchhHHHHHHHhhcCCCcEEE
Confidence            99999988887764 3355554444

>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain

Probab=98.35  E-value=1.4e-06  Score=58.16  Aligned_cols=54  Identities=26%  Similarity=0.319  Sum_probs=44.9

Q ss_pred             EEeeEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhhccCCCCEEEEEEECCEE
Q 030538           54 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA  109 (175)
Q Consensus        54 le~~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~~  109 (175)
                      ++||..|.++.+|+...+||+||||.++++..  .+...-+++|.+|.++-.-|+.
T Consensus         1 i~k~~aqVisi~g~~vQlMD~eTYeT~ev~~p--~~~~~~i~~G~eV~y~~~~g~~   54 (57)
T cd04467           1 IERKTGQVLSIMGDVVQLMDLETYETFEVPIP--EEIKDKLEPGKEVEYWESMGKR   54 (57)
T ss_pred             CcceEEEEEEEcCCEEEEeccccceeEEEecc--hhhcccCCCCCEEEEEeecCeE
Confidence            57999999999999999999999999999985  2233458999999976666653

aIF5A is a homolog of eukaryotic eIF5A. IF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is a post-translationally modified lysine and is essential for IF5A function. In yeast, eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the cold-shock domain which binds RNA. Moreover, IF5A prefers binding to the actively translating ribosome. This evidence suggests that IF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []

Probab=97.28  E-value=0.0016  Score=44.94  Aligned_cols=52  Identities=23%  Similarity=0.365  Sum_probs=38.1

Q ss_pred             eEEeeEEEEEEeeCC-EEEEEeCCCcce---eecCchhhhchh-hccCCCCEEEEEEE
Q 030538           53 FVEDKSFTCLYTEND-TAFVIESETFEQ---LEVPLDVFGKAG-AYLQEGMKVWLQLY  105 (175)
Q Consensus        53 ~le~~~~qylY~Dgd-~~vFMD~etyeq---i~l~~~~lgd~~-~~L~eg~~v~v~~~  105 (175)
                      .++|++||.+..++| +..+|| ++|+.   +.||...++..+ .-+.+|.++.|.++
T Consensus         1 ~V~r~eyqli~I~~Dg~lsLMd-e~get~eDl~lP~~el~~ei~~~~~~g~~~~Vtv~   57 (69)
T PF01287_consen    1 IVKRKEYQLIDIDGDGFLSLMD-EDGETREDLKLPDGELGEEIKAKFEEGKEVLVTVL   57 (69)
T ss_dssp             -EEEEEEEEEEEETTTEEEEEE-TTS-EEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CeEEEEEEEEEEccCcEEEEEc-CCCCeeccEEecccchhHHHHhhccCCCeEEEEEE
Confidence            478999999999988 778999 66555   558966666554 45699999655555

Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.

>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]

Probab=95.52  E-value=0.13  Score=45.93  Aligned_cols=80  Identities=23%  Similarity=0.246  Sum_probs=61.7

Q ss_pred             EEEEEECCCCCeEEEEeCCCCcEE--eeeEE--eeEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhhccCCCCEEEE
Q 030538           27 QMELRDIDTGNKVSLRFGTEEAVE--RVFVE--DKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWL  102 (175)
Q Consensus        27 r~klknl~TG~~~e~~f~s~dkve--~~~le--~~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~v  102 (175)
                      .+.++|+.|+...+.++.-...-+  .+.-+  -+.+.++-.+.+...|||++|||-.++...       =|.+|.++.+
T Consensus       269 ~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vvs~~~~~~~v~d~et~e~~~~~~~-------~~~~g~~v~v  341 (355)
T COG1499         269 GIVVLDLETGEPVEITWSVYKRNEGKVAVKEPRLKKAVVVSRDPSAIQVLDPETYEARTVKGP-------SLEEGDEVKV  341 (355)
T ss_pred             ceEEEecccCCccccChhhcccCcceeeeccccceEEEEEecCCCceEEEecceEEEEeccCC-------CCCCCCEEEE
Confidence            378899999988777664433333  22223  367888889999999999999999999876       4589999999


Q ss_pred             EEECCEEEEEe
Q 030538          103 QLYDGRALSGS  113 (175)
Q Consensus       103 ~~~~~~~i~v~  113 (175)
                      ..+.|....++
T Consensus       342 ~~~~~~~~~~~  352 (355)
T COG1499         342 FKVRGRNYVVE  352 (355)
T ss_pred             EEEeceEEeec
Confidence            99998876654

>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain

Probab=94.21  E-value=0.17  Score=34.95  Aligned_cols=52  Identities=21%  Similarity=0.350  Sum_probs=40.2

Q ss_pred             EEeeEEEEEEeeCCEEEEEeC--CCcceeecCchhhhchhh-ccCCCCEEEEEEE
Q 030538           54 VEDKSFTCLYTENDTAFVIES--ETFEQLEVPLDVFGKAGA-YLQEGMKVWLQLY  105 (175)
Q Consensus        54 le~~~~qylY~Dgd~~vFMD~--etyeqi~l~~~~lgd~~~-~L~eg~~v~v~~~  105 (175)
                      +.|++||.+..++++..+|+.  ++-|++.||.+.++..+. -..+|..+.+...
T Consensus         1 V~R~eYqLidI~dGflsLm~e~G~~k~DlklP~~elg~~I~~~f~~gk~~~vtV~   55 (69)
T cd04468           1 VKRTEYQLIDIDDGFLSLMDDDGETREDLKLPEGELGKEIREKFDEGKDVLVTVL   55 (69)
T ss_pred             CcceeEEEEeecCCeEEEEcCCCCcccCCcCCcHHHHHHHHHHHhCCCcEEEEEE
Confidence            468999999997788899976  679999999988887763 3356766665543

eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain

Probab=84.80  E-value=4.8  Score=28.22  Aligned_cols=48  Identities=13%  Similarity=0.146  Sum_probs=35.0

Q ss_pred             eEEEEEEeeCCEEEEEeC--CCcceeecC-chhhhchhh-ccCCCC-EEEEEE
Q 030538           57 KSFTCLYTENDTAFVIES--ETFEQLEVP-LDVFGKAGA-YLQEGM-KVWLQL  104 (175)
Q Consensus        57 ~~~qylY~Dgd~~vFMD~--etyeqi~l~-~~~lgd~~~-~L~eg~-~v~v~~  104 (175)
                      ++||.+..++++..+||.  ++-+++.|| .+.++..+. -..+|. ++.+..
T Consensus         3 ~eYqLidI~DG~lsLM~e~G~~kdDl~lP~~~~l~~~I~~~f~~gk~~v~VtV   55 (75)
T cd04469           3 KQYRVLDIQDGSIVAMTETGDVKQGLPVIDQSNLWTRLKTAFESGRGSVRVLV   55 (75)
T ss_pred             eEEEEEEecCCeEEEEcCCCCcccCccCCCcchHHHHHHHHHHCCCCcEEEEE
Confidence            579999997678889975  678999999 777776653 226666 555444

Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.

>PF00900 Ribosomal_S4e: Ribosomal family S4e; InterPro: IPR013845 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=82.81  E-value=1.5  Score=30.68  Aligned_cols=33  Identities=9%  Similarity=0.199  Sum_probs=26.6

Q ss_pred             CceEEEeecccEEEcc-cceeCCCEEEEECCCCc
Q 030538          137 RYRRALLDNGVTVMVP-SYLEIGEEIFINPQDDS  169 (175)
Q Consensus       137 ~~K~A~letG~~v~VP-~fI~~Gd~I~V~T~~g~  169 (175)
                      +-=...|..|..+..| +-|+.||.|+|+..+++
T Consensus        42 G~~ql~~hDGrni~~~~~~~k~~Dtv~i~l~~~k   75 (77)
T PF00900_consen   42 GKPQLNTHDGRNIRYPDPDIKTNDTVVIDLPTQK   75 (77)
T ss_dssp             GEEEEEETTTEEEES-SST--TTEEEEEETTTTE
T ss_pred             CcEEEEecCceEEEcCcCCccCCCEEEEECCCCc
Confidence            3447888999999999 99999999999999886

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes yeast S7 (YS6); archaeal S4e; and mammalian and plant cytoplasmic S4 []. Two highly similar isoforms of mammalian S4 exist, one coded by a gene on chromosome Y, and the other on chromosome X. These proteins have 233 to 264 amino acids. This entry represents the central region of these proteins.; PDB: 2XZM_W 2XZN_W 3IZ6_D 3KBG_A 3U5G_E 3U5C_E 3IZB_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
1ueb_A	184	Crystal Structure Of Translation Elongation Factor		2e-19
3a5z_B	191	Crystal Structure Of Escherichia Coli Genx In Compl		1e-15
1yby_A	215	Conserved Hypothetical Protein Cth-95 From Clostrid		1e-15
3tre_A	191	Structure Of A Translation Elongation Factor P (Efp		2e-12
3oyy_A	191	Structure Of Pseudomonas Aeruginosa Elongation Fact		1e-10

>pdb|1UEB|A Chain A, Crystal Structure Of Translation Elongation Factor P From Thermus Thermophilus Hb8 Length = 184

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 92/170 (54%), Gaps = 3/170 (1%)
Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G +++ ++ +H++ GRGGA +  + ++++TG  V   F + E +E ++VE +    LY E
Sbjct: 17  GGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPE 76
Query: 66  NDTAFVIESETFEQLEVPLD-VFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKE 124
            +    ++ ET+EQ  VP   V G    + +EGM     +Y+G+ +  + P  V   + +
Sbjct: 77  GEEMVFMDLETYEQFAVPRSRVVG--AEFFKEGMTALGDMYEGQPIKVTPPTVVELKVVD 134
Query: 125 IHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
                +G TV+   + A L+ G  V VP ++E GE I ++ +   Y+GRA
Sbjct: 135 TPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 184

>pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 191

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 84/170 (49%)
Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G+ Y V  +E  + G+G A  +++LR + TG +V   F + ++ E   V D + T LY +
Sbjct: 22  GEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND 81
Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +    + +ETFEQL       G    +L +  +  + L++G+ +S + P  V   I + 
Sbjct: 82  GEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDT 141
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               KG T     + A L  G  V VP +++IGE I ++ +   Y+ R K
Sbjct: 142 DPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK 191

>pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium Thermocellum Length = 215

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 84/168 (50%)
Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G+++QVI+ +H + G+G A ++ +L++I TG  +   F   +   +  +E K    LY +
Sbjct: 47  GQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKXPKAHIERKDXQYLYND 106
Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D  +  ++ETFEQL +  D  G A  +++E   V +  + G       P  V   + + 
Sbjct: 107 GDLYYFXDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDT 166
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
               KG T T   + A+++ G ++ VP ++  G+ I I+ +   Y  R
Sbjct: 167 EPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYXER 214

>pdb|3TRE|A Chain A, Structure Of A Translation Elongation Factor P (Efp) From Coxiella Burnetii Length = 191

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%)
Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G    +ID E  + G+G A  +++ R++ TG  +   F + E +    V +     LY +
Sbjct: 22  GDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEXQYLYND 81
Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +      SE +EQ     +   +A  +L+E     +  ++G  LS   P  V   I E 
Sbjct: 82  GEFWHFXTSENYEQHAASKEAVAEAKQWLKEEALCXVTXWNGVPLSVEPPNFVELKITET 141
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               +G T T   +RA L+ G  V VP +L  GE I ++ +   Y+ RAK
Sbjct: 142 EPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYVSRAK 191

>pdb|3OYY|A Chain A, Structure Of Pseudomonas Aeruginosa Elongation Factor P Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 5   TGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
            G  + +  AE  + GR  A+++M+L+++ TG      F  ++ +E + ++ K  T  Y 
Sbjct: 19  NGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYF 78
Query: 65  ENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQ--LYDGRALSGSIPKRVACTI 122
            +     ++SE F Q E+  D       ++++GM    +   Y+ + +S  +P  +   I
Sbjct: 79  ADPLYVFMDSE-FNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQI 137
Query: 123 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
                + +G T     + A L+NG  + V ++ EIG+ I I+ +   Y  R K
Sbjct: 138 AYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVK 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	8e-44
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	1e-43
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	2e-43
1yby_A	215	Translation elongation factor P; conserved hypothe	1e-42
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	4e-39
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	3e-17
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	4e-16
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	7e-15
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	1e-06

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Length = 191

 Score =  142 bits (361), Expect = 8e-44
 Identities = 49/170 (28%), Positives = 84/170 (49%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G+ Y V  +E  + G+G A  +++LR + TG +V   F + ++ E   V D + T LY +
Sbjct: 22  GEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND 81

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +    + +ETFEQL       G    +L +  +  + L++G+ +S + P  V   I + 
Sbjct: 82  GEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDT 141

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               KG T     + A L  G  V VP +++IGE I ++ +   Y+ R K
Sbjct: 142 DPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK 191

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Length = 191

 Score =  142 bits (360), Expect = 1e-43
 Identities = 47/170 (27%), Positives = 79/170 (46%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G    +ID E  + G+G A  +++ R++ TG  +   F + E +    V +     LY +
Sbjct: 22  GDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYND 81

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +    + SE +EQ     +   +A  +L+E     + +++G  LS   P  V   I E 
Sbjct: 82  GEFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITET 141

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               +G T T   +RA L+ G  V VP +L  GE I ++ +   Y+ RAK
Sbjct: 142 EPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYVSRAK 191

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Length = 184

 Score =  141 bits (358), Expect = 2e-43
 Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 1/169 (0%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G +++ ++ +H++ GRGGA +  + ++++TG  V   F + E +E ++VE +    LY E
Sbjct: 17  GGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPE 76

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            +    ++ ET+EQ  VP      A  + +EGM     +Y+G+ +  + P  V   + + 
Sbjct: 77  GEEMVFMDLETYEQFAVPRSRVVGAE-FFKEGMTALGDMYEGQPIKVTPPTVVELKVVDT 135

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
               +G TV+   + A L+ G  V VP ++E GE I ++ +   Y+GRA
Sbjct: 136 PPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 184

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Length = 215

 Score =  140 bits (355), Expect = 1e-42
 Identities = 45/168 (26%), Positives = 87/168 (51%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G+++QVI+ +H + G+G A ++ +L++I TG  +   F   + + +  +E K    LY +
Sbjct: 47  GQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYND 106

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
            D  + +++ETFEQL +  D  G A  +++E   V +  + G       P  V   + + 
Sbjct: 107 GDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDT 166

Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
               KG T T   + A+++ G ++ VP ++  G+ I I+ +   Y+ R
Sbjct: 167 EPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYMER 214

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Length = 191

 Score =  130 bits (330), Expect = 4e-39
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 3/172 (1%)

Query: 6   GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
           G  + +  AE  + GR  A+++M+L+++ TG      F  ++ +E + ++ K  T  Y  
Sbjct: 20  GAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFA 79

Query: 66  NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGM--KVWLQLYDGRALSGSIPKRVACTIK 123
           +   +V     F Q E+  D       ++++GM        Y+ + +S  +P  +   I 
Sbjct: 80  DPL-YVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIA 138

Query: 124 EIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
               + +G T     + A L+NG  + V ++ EIG+ I I+ +   Y  R K
Sbjct: 139 YTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVK 190

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138

 Score = 72.8 bits (179), Expect = 3e-17
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 6   GKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
            +  ++++      G+ G A  ++E   I  G   S+   T   V+   ++ K+   +  
Sbjct: 22  DEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAI 81

Query: 65  ENDTAFVIESETFEQLEVPLD--VFGKAGAYLQEGMKVWLQLYDGR 108
             DT  +++ ET+E  EVP+D  V  +    L+EG+ V      GR
Sbjct: 82  TPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGR 127

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136

 Score = 69.8 bits (171), Expect = 4e-16
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 6   GKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
           G+  +V++ E  + G+ G A  ++    +  G K +L    +  VE   +E  +   L  
Sbjct: 24  GEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSV 83

Query: 65  ENDTAFVIESETFEQLEVPLDVFG-KAGAYLQEGMKVWLQLYDGR 108
             D   +++   ++ +EVP+     +A   L  G +V +     R
Sbjct: 84  SGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDR 128

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136

 Score = 66.7 bits (163), Expect = 7e-15
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 6   GKMYQVIDAEHKQRG-RGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
           G   +++D    + G  GGA  ++    I    K      T   VE   ++ +    L  
Sbjct: 26  GVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAI 85

Query: 65  ENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 110
             D   +++ +T+E LE+P+    +    L+ G +V      G+  
Sbjct: 86  MGDMVQIMDLQTYETLELPIP---EGIEGLEPGGEVEYIEAVGQYK 128

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 13/99 (13%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 6   GKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 64
           G+  ++++    + G+ G A + +   DI TG K      +   ++   ++   F  +  
Sbjct: 22  GRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI 81

Query: 65  ENDTAFVIESETFEQLEVPL---DVFGKAGAYLQEGMKV 100
           ++    +++     + ++ L   D+  +       G ++
Sbjct: 82  QDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEI 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	100.0
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	100.0
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	100.0
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	100.0
1yby_A	215	Translation elongation factor P; conserved hypothe	100.0
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	100.0
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	100.0
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	100.0
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	100.0
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	100.0
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	100.0
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	100.0
1khi_A	176	HEX1; membrane sealing, peroxisomal target, struct	99.33

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V

Probab=100.00  E-value=1.4e-76  Score=477.45  Aligned_cols=172  Identities=28%  Similarity=0.567  Sum_probs=170.9

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |++||+||+|++++|+|||||+|++|+|||||+||+++|++|++++++|.|++++++|||||.||+.|+|||+|||||++
T Consensus        13 i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~~FMD~etyeq~~   92 (184)
T 1ueb_A           13 VKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEMVFMDLETYEQFA   92 (184)
T ss_dssp             EEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEEEEeeCCCceeEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538           82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI  161 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I  161 (175)
                      ||++.+|++ +||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus        93 l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I  171 (184)
T 1ueb_A           93 VPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVI  171 (184)
T ss_dssp             EEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEE
T ss_pred             cCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcCCCEEEeCCcCcCCCEE
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeeec
Q 030538          162 FINPQDDSYIGRA  174 (175)
Q Consensus       162 ~V~T~~g~Y~~R~  174 (175)
                      +||||||+|++||
T Consensus       172 ~vdT~~g~Y~~R~  184 (184)
T 1ueb_A          172 KVDTRTGEYVGRA  184 (184)
T ss_dssp             EEETTTTEEEEEC
T ss_pred             EEECCCCeEeccC
Confidence            9999999999997

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.5e-76  Score=478.25  Aligned_cols=173  Identities=23%  Similarity=0.427  Sum_probs=169.1

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |++||+||+|++++|+|||||+|++|+|||||+||++++++|+++++++.|+++++++||||.||+.|+||| |||||++
T Consensus        16 I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~~~FMD-etyEq~~   94 (191)
T 3oyy_A           16 ANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMD-SEFNQYE   94 (191)
T ss_dssp             EEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSSEEEEE-TTCCEEE
T ss_pred             EEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCEEEEEe-cChhhee
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             cCchhhhchhhccCCCCE--EEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCC
Q 030538           82 VPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGE  159 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~--v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd  159 (175)
                      ||++.+||+.+||+|||+  |.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||
T Consensus        95 l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd  174 (191)
T 3oyy_A           95 IEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGD  174 (191)
T ss_dssp             ECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETTSCEEEEETTCCTTC
T ss_pred             CChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeCCCEEEeCCeeeCCC
Confidence            999999999999999999  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeeecC
Q 030538          160 EIFINPQDDSYIGRAK  175 (175)
Q Consensus       160 ~I~V~T~~g~Y~~R~~  175 (175)
                      +|+||||||+|++|||
T Consensus       175 ~I~VdT~~g~Y~~R~k  190 (191)
T 3oyy_A          175 SIEIDTRTGEYKSRVK  190 (191)
T ss_dssp             EEEEETTTTEEEEEC-
T ss_pred             EEEEECCCCeEhhhcc
Confidence            9999999999999996

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}

Probab=100.00  E-value=4.2e-77  Score=482.87  Aligned_cols=174  Identities=27%  Similarity=0.447  Sum_probs=116.3

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |++||+||+|++++|+|||||+|++|+|||||+||++++++|++++++|.|+++++++||||.||+.|+|||+|||||++
T Consensus        18 I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~~~FMD~etyEq~~   97 (191)
T 3tre_A           18 VMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGEFWHFMTSENYEQHA   97 (191)
T ss_dssp             EEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSSCEEEEESSSCCEEE
T ss_pred             EEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCCcEEEccCCchHhee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538           82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI  161 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I  161 (175)
                      ||++.+||+.+||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus        98 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I  177 (191)
T 3tre_A           98 ASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEII  177 (191)
T ss_dssp             ECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC-------------------------------------------
T ss_pred             cchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCcCeEEEeCCCEEEeCCeEcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeeecC
Q 030538          162 FINPQDDSYIGRAK  175 (175)
Q Consensus       162 ~V~T~~g~Y~~R~~  175 (175)
                      +||||||+|++|||
T Consensus       178 ~VdT~~g~Y~~R~k  191 (191)
T 3tre_A          178 KVDTRRGEYVSRAK  191 (191)
T ss_dssp             --------------
T ss_pred             EEECCCCeEecccC
Confidence            99999999999996

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}

Probab=100.00  E-value=8.9e-78  Score=486.74  Aligned_cols=174  Identities=28%  Similarity=0.472  Sum_probs=121.3

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |++||+||+|++++|+|||||+|++|+|||||+||+++|++||+++++|.|+++++++||||.||+.|+|||+|||||++
T Consensus        18 I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~~FMD~etyeQ~~   97 (191)
T 3a5z_B           18 IMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLS   97 (191)
T ss_dssp             EEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSSCEEEECTTTCCEEE
T ss_pred             EEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCCCEEEEeeCCCCeEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538           82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI  161 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I  161 (175)
                      ||++.+||+.+||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus        98 l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I  177 (191)
T 3a5z_B           98 ADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVI  177 (191)
T ss_dssp             ECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC--------------------------------------
T ss_pred             ccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEeCCCEEEeCCcEeCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeeecC
Q 030538          162 FINPQDDSYIGRAK  175 (175)
Q Consensus       162 ~V~T~~g~Y~~R~~  175 (175)
                      +||||||+|++|||
T Consensus       178 ~VdT~~g~Y~~R~~  191 (191)
T 3a5z_B          178 KVDTRSGEYVSRVK  191 (191)
T ss_dssp             --------------
T ss_pred             EEECCCCeEeeccC
Confidence            99999999999996

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}

Probab=100.00  E-value=8.4e-76  Score=482.33  Aligned_cols=173  Identities=26%  Similarity=0.479  Sum_probs=162.9

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE   81 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~   81 (175)
                      |++||+||+|++++|+|||||+|++|+|||||+||+++|++|++++++|.|++++++|||||.||+.|+|||+|||||++
T Consensus        43 I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~Dgd~y~FMD~ETyEQi~  122 (215)
T 1yby_A           43 FELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLP  122 (215)
T ss_dssp             EEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEETTEEEEECTTTCCEEE
T ss_pred             EEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEeCCCEEEEccCCCCeeEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538           82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI  161 (175)
Q Consensus        82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I  161 (175)
                      ||++.+||+.+||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus       123 l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~KpA~leTG~~v~VP~FI~~Gd~I  202 (215)
T 1yby_A          123 LGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDII  202 (215)
T ss_dssp             EEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETTSCEEEEETTCCTTCEE
T ss_pred             ecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCccEEEeCCcEEEeCCcEeCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeeec
Q 030538          162 FINPQDDSYIGRA  174 (175)
Q Consensus       162 ~V~T~~g~Y~~R~  174 (175)
                      +||||||+|++||
T Consensus       203 ~VdT~~g~Y~~R~  215 (215)
T 1yby_A          203 RIDTRTGEYMERV  215 (215)
T ss_dssp             EEETTTTEEEEEC
T ss_pred             EEECCCCeEeccC
Confidence            9999999999997

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=5.6e-40  Score=252.73  Aligned_cols=112  Identities=19%  Similarity=0.237  Sum_probs=108.3

Q ss_pred             eEEcCcEEEEEEeEEecCCCC-CcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL   80 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG-~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi   80 (175)
                      |+++|+||+|++++|+||||| +|++|+++|||+||+++|++|+|+++++.|+++++++||||.||+.|+|||+|||||+
T Consensus        20 i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg~~~~fMD~etyeq~   99 (136)
T 1bkb_A           20 VVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSGDVIQLMDMRDYKTI   99 (136)
T ss_dssp             EEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECSSEEEEEETTTCCEE
T ss_pred             EEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecCCEEEEEeCCCCeEE
Confidence            789999999999999999995 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCchh-hhchhhccCCCCEEEEEEECCEEEEEe
Q 030538           81 EVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSGS  113 (175)
Q Consensus        81 ~l~~~~-lgd~~~~L~eg~~v~v~~~~~~~i~v~  113 (175)
                      +|+.+. +|++.+||+||++|.+++|+|++.-+.
T Consensus       100 ~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~~  133 (136)
T 1bkb_A          100 EVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIR  133 (136)
T ss_dssp             EEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEEE
T ss_pred             EeccccchhHHHhhCCCCCEEEEEEECCEEEEEE
Confidence            999999 999999999999999999999886543

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=6.6e-39  Score=247.42  Aligned_cols=109  Identities=22%  Similarity=0.276  Sum_probs=106.5

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL   80 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi   80 (175)
                      |+++|+||+|++++|+|||| |+|++|+++|||+||++++++|+++++++.|+++++++||||.||+.|+|||+|||||+
T Consensus        18 i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~dg~~~~fMD~etyeq~   97 (138)
T 1iz6_A           18 IIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYETF   97 (138)
T ss_dssp             EEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSSEEEEECTTTCCEE
T ss_pred             EEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeCCCEEEEEeCCCCceE
Confidence            78999999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             ec--CchhhhchhhccCCCCEEEEEEECCEEE
Q 030538           81 EV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL  110 (175)
Q Consensus        81 ~l--~~~~lgd~~~~L~eg~~v~v~~~~~~~i  110 (175)
                      +|  |.+.+|++.+||+||++|.++++.|+..
T Consensus        98 ~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~  129 (138)
T 1iz6_A           98 EVPIDTGVADEIRDQLKEGINVEYWETLGRIK  129 (138)
T ss_dssp             EEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred             EeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence            99  9999999999999999999999999764

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=244.99  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=99.7

Q ss_pred             eEEcCcEEEEEEeEEecCCCC-CcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL   80 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG-~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi   80 (175)
                      |+++|+||+|++++|+||||| +|++|+++|||+||+++|++|+|+++++.|++++++|||||.||+.|+|||+|||||+
T Consensus        18 i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~dg~~~~fMD~etyeq~   97 (138)
T 3cpf_A           18 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVRE   97 (138)
T ss_dssp             EEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEETTEEEEECTTSCEEC
T ss_pred             EEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCCEEEEEcCCCCeEe
Confidence            689999999999999999995 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             e--cCchhhhchh-hccCCCCEEEEEEEC
Q 030538           81 E--VPLDVFGKAG-AYLQEGMKVWLQLYD  106 (175)
Q Consensus        81 ~--l~~~~lgd~~-~~L~eg~~v~v~~~~  106 (175)
                      .  ||.+.+|+++ +||+||++|.|.+|+
T Consensus        98 ~l~l~~~~lgd~~~~~l~eg~~v~V~~~~  126 (138)
T 3cpf_A           98 DLRLPEGDLGKEIEQKYDCGEEILITVLS  126 (138)
T ss_dssp             CSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             eecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence            9  7999999999 999999999999995

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A

Probab=100.00  E-value=2.6e-37  Score=237.97  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=104.1

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL   80 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi   80 (175)
                      |+++|+||+|++++|+|||| |+|++|+|+|||+||+++|++|+++++++.|+++++++||||.||+.|+|||+|||||+
T Consensus        22 I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg~~~~fMD~etyeq~  101 (136)
T 2eif_A           22 VMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETL  101 (136)
T ss_dssp             EEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETTEEEEEETTTCCEE
T ss_pred             EEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecCCEEEEEeCCCceEE
Confidence            68999999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCchhhhchhhccCCCCEEEEEEECCEEEE
Q 030538           81 EVPLDVFGKAGAYLQEGMKVWLQLYDGRALS  111 (175)
Q Consensus        81 ~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~  111 (175)
                      +|+++  ||+.+ |+||++|.+++|.|++.-
T Consensus       102 ~l~~~--gd~~~-l~e~~~v~v~~~~G~~~i  129 (136)
T 2eif_A          102 ELPIP--EGIEG-LEPGGEVEYIEAVGQYKI  129 (136)
T ss_dssp             EEECC--SCCTT-CSTTCEEEEEEETTEEEE
T ss_pred             EecCC--Cchhh-CCCCCEEEEEEECCEEEE
Confidence            99999  99999 999999999999998653

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A

Probab=100.00  E-value=1.6e-35  Score=236.08  Aligned_cols=105  Identities=21%  Similarity=0.329  Sum_probs=99.1

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCC-------EEEEEe
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND-------TAFVIE   73 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd-------~~vFMD   73 (175)
                      |+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+++++++.|+|++++|||||.||+       .|+|||
T Consensus        42 I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD  121 (174)
T 1x6o_A           42 VCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMD  121 (174)
T ss_dssp             EEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECCSSTTSCCEEEEEC
T ss_pred             EEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCCcccccccEEEEEc
Confidence            78999999999999999999 5999999999999999999999999999999999999999999999       999999


Q ss_pred             CCCcceeec--Cch-hhhch-hhccCCCCEEEEEEEC
Q 030538           74 SETFEQLEV--PLD-VFGKA-GAYLQEGMKVWLQLYD  106 (175)
Q Consensus        74 ~etyeqi~l--~~~-~lgd~-~~~L~eg~~v~v~~~~  106 (175)
                      +++|||+.|  |.+ .||++ .+||+||++|.|.+|.
T Consensus       122 ~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~  158 (174)
T 1x6o_A          122 DEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS  158 (174)
T ss_dssp             TTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence            999999999  788 89999 8999999999999995

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-36  Score=238.78  Aligned_cols=105  Identities=16%  Similarity=0.284  Sum_probs=102.4

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEe--CCCcc
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIE--SETFE   78 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD--~etye   78 (175)
                      |+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|++++++|||||.||+.|+|||  .+|||
T Consensus        42 I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~dg~~~~FMD~~~etye  121 (167)
T 3er0_A           42 VVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDDGFLSLMNMDGDTKD  121 (167)
T ss_dssp             EEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTTTTCCCCCSSSCCCS
T ss_pred             EEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCccccceEEEeeEEEEEEcCCEEEEEeCCCCeeE
Confidence            78999999999999999999 9999999999999999999999999999999999999999999999999999  89999


Q ss_pred             eeecCchhhhchh-hccCCCCEEEEEEEC
Q 030538           79 QLEVPLDVFGKAG-AYLQEGMKVWLQLYD  106 (175)
Q Consensus        79 qi~l~~~~lgd~~-~~L~eg~~v~v~~~~  106 (175)
                      |+.||++.||+++ .||+||++|.|++|+
T Consensus       122 qi~l~~~~lgd~i~~~l~eg~~v~V~~~~  150 (167)
T 3er0_A          122 DVKAPEGELGDSLQTAFDEGKDLMVTIIS  150 (167)
T ss_dssp             CCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred             EEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence            9999999999998 789999999999995

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}

Probab=100.00  E-value=2.4e-34  Score=227.94  Aligned_cols=105  Identities=12%  Similarity=0.154  Sum_probs=99.2

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeC-CEEEEEeCCCcce
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN-DTAFVIESETFEQ   79 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dg-d~~vFMD~etyeq   79 (175)
                      |+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|.|++++|||||.|+ +.|+|||+++|||
T Consensus        40 I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ  119 (167)
T 3hks_A           40 IVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTK  119 (167)
T ss_dssp             EEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECTTSBEEEECTTSCEE
T ss_pred             EEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCEEEeeeEEEEEEEEEEECCCCEEEEEcCCCceE
Confidence            78999999999999999999 999999999999999999999999999999999999999999965 6899999999999


Q ss_pred             e--ecCch-hhhchh-hccCCCCEEEEEEEC
Q 030538           80 L--EVPLD-VFGKAG-AYLQEGMKVWLQLYD  106 (175)
Q Consensus        80 i--~l~~~-~lgd~~-~~L~eg~~v~v~~~~  106 (175)
                      +  .||.+ .|++++ .||++|++|.|.+|+
T Consensus       120 ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~  150 (167)
T 3hks_A          120 DDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS  150 (167)
T ss_dssp             CCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence            5  66777 899877 999999999999995

>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5

Probab=99.33  E-value=1.8e-11  Score=97.17  Aligned_cols=101  Identities=14%  Similarity=0.065  Sum_probs=83.8

Q ss_pred             eEEcCcEEEEEEeEEe-cCCCCCcEEEEEEEECCCCCeEEEEeCCC--------CcEEeeeEEeeEEEEEEeeCCEEEEE
Q 030538            2 TLTTGKMYQVIDAEHK-QRGRGGAMMQMELRDIDTGNKVSLRFGTE--------EAVERVFVEDKSFTCLYTENDTAFVI   72 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~-kpGkG~A~vr~klknl~TG~~~e~~f~s~--------dkve~~~le~~~~qylY~Dgd~~vFM   72 (175)
                      ++++|+||+|++++.+ ||||-    ++...||+||++.|...+++        ++++.+.+.  +||.|..++++..+|
T Consensus        46 v~IkGrPCKIveiStS~KtGKH----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm~VPvVk--~yQlldI~dg~lsLM  119 (176)
T 1khi_A           46 LILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFK--QYRVLDMQDGSIVAM  119 (176)
T ss_dssp             EEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCE--EEEEEEEETTEEEEE
T ss_pred             EEECCeeeEEEEEEccCCCCce----EEEEEEccCCcEeEEeccccCCCcccccceeccceeE--EEEEEEEcCCeEEEE
Confidence            7899999999999999 89998    89999999999999999988        899999996  999999999999999


Q ss_pred             eCCCcc--eeecCc-hhhhchh-hccCCCCE---EEEEEECCE
Q 030538           73 ESETFE--QLEVPL-DVFGKAG-AYLQEGMK---VWLQLYDGR  108 (175)
Q Consensus        73 D~etye--qi~l~~-~~lgd~~-~~L~eg~~---v~v~~~~~~  108 (175)
                      |.+.|+  ++.+|. ..|+..+ ..+.+|.+   |.++-.-|+
T Consensus       120 d~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~  162 (176)
T 1khi_A          120 TETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGR  162 (176)
T ss_dssp             CTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTE
T ss_pred             eCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCc
Confidence            998765  555564 3355444 45678866   555555564

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1ueba3	58	b.40.4.5 (A:127-184) Elongation factor P middle an	6e-14
d1ueba1	63	b.34.5.2 (A:1-63) Elongation factor P N-terminal d	9e-13
d1ueba2	63	b.40.4.5 (A:64-126) Elongation factor P middle and	1e-11
d1iz6a1	69	b.34.5.2 (A:2-70) Eukaryotic initiation translatio	7e-06

>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 58

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 61.1 bits (149), Expect = 6e-14
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
           V   + +     +G TV+   + A L+ G  V VP ++E GE I ++ +   Y+GRA
Sbjct: 2   VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 58

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 58.1 bits (141), Expect = 9e-13
 Identities = 13/47 (27%), Positives = 30/47 (63%)

Query: 6  GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERV 52
          G +++ ++ +H++ GRGGA +  + ++++TG  V   F + E +E +
Sbjct: 17 GGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDI 63

>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 55.0 bits (133), Expect = 1e-11
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 53  FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG 112
           +VE +    LY E +    ++ ET+EQ  VP      A  + +EGM     +Y+G+ +  
Sbjct: 1   YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKV 59

Query: 113 SIP 115
           + P
Sbjct: 60  TPP 62

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.1 bits (94), Expect = 7e-06
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 6  GKMYQVIDAE-HKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVE 50
           +  ++++         G A  ++E   I  G   S+   T   V+
Sbjct: 21 DEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVD 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1ueba3	58	Elongation factor P middle and C-terminal domains	99.96
d1ueba2	63	Elongation factor P middle and C-terminal domains	99.93
d1ueba1	63	Elongation factor P N-terminal domain {Thermus the	99.79
d1iz6a1	69	Eukaryotic initiation translation factor 5a (eIF5a	99.73
d1bkba1	71	Eukaryotic initiation translation factor 5a (eIF5a	99.72
d2eifa1	73	Eukaryotic initiation translation factor 5a (eIF5a	99.71
d1x6oa1	68	Eukaryotic initiation translation factor 5a (eIF5a	99.18
d2eifa2	59	C-terminal domain of eukaryotic initiation transla	98.27
d1bkba2	65	C-terminal domain of eukaryotic initiation transla	98.23
d1iz6a2	67	C-terminal domain of eukaryotic initiation transla	98.15
d1khia1	76	Woronin body major protein (Hex1) {Filamentous fun	98.07
d1x6oa2	79	C-terminal domain of eukaryotic initiation transla	81.49

>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.96  E-value=1.2e-30  Score=171.61  Aligned_cols=57  Identities=32%  Similarity=0.547  Sum_probs=56.4

Q ss_pred             EEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEEEEECCCCceeeec
Q 030538          118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA  174 (175)
Q Consensus       118 v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I~V~T~~g~Y~~R~  174 (175)
                      |+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++||
T Consensus         2 V~l~V~etep~vKG~Ta~~~~K~a~letG~~i~VP~FI~~Gd~I~VdT~~g~Y~~RA   58 (58)
T d1ueba3           2 VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA   58 (58)
T ss_dssp             EEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EEEEEEECCCCcccccccCCcceEEEcCCCEEEcCCcccCCCEEEEECCCCeEeccC
Confidence            799999999999999999999999999999999999999999999999999999997

>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.93  E-value=5.5e-26  Score=152.04  Aligned_cols=63  Identities=29%  Similarity=0.580  Sum_probs=60.8

Q ss_pred             eEEeeEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhhccCCCCEEEEEEECCEEEEEeCCC
Q 030538           53 FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPK  116 (175)
Q Consensus        53 ~le~~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~  116 (175)
                      .|++|++||||.||+.|+|||++||||++|+++.+|++ +||+||++|.+.+|+|+||+|+||.
T Consensus         1 ~ve~~~~qyLY~dgd~~~FMd~etyEQi~v~~~~i~~~-~~L~eg~~~~v~~~~~~~i~i~lPT   63 (63)
T d1ueba2           1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPT   63 (63)
T ss_dssp             CEEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCS
T ss_pred             CccceeEEEEEeCCCeEEEEeCCCccEEEcCHHHcChh-ccccCCCEEEEEEECCEEEEEECCC
Confidence            48999999999999999999999999999999999986 8999999999999999999999995

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.79  E-value=1.1e-19  Score=120.93  Aligned_cols=51  Identities=25%  Similarity=0.599  Sum_probs=49.5

Q ss_pred             eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEee
Q 030538            2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERV   52 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~   52 (175)
                      |.+||+||+|++++|++||||+|++|+|||||.||+++|+||+++|++|.+
T Consensus        13 i~~~g~~~~V~~~~~~kpgkg~a~v~~Klknl~tG~~~e~tf~~~dkve~V   63 (63)
T d1ueba1          13 VKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDI   63 (63)
T ss_dssp             EEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEEC
T ss_pred             EEECCEEEEEEEEEEEcCCCCceEEEEEEEEcCCCCEEEEEECCCCEeeeC
Confidence            689999999999999999999999999999999999999999999999975

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=5.6e-18  Score=114.48  Aligned_cols=51  Identities=18%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEee
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERV   52 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~   52 (175)
                      |+++|+||+|++++|+|||| |+|++|+++|||+||++.|.+|+++|++|.+
T Consensus        17 i~~~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~~~s~d~vevP   68 (69)
T d1iz6a1          17 IIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVP   68 (69)
T ss_dssp             EEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred             EEECCEEEEEEEEEEEcCCCcCccEEEEEEEEcccCCEEEEEEcCCCEEecc
Confidence            78999999999999999998 9999999999999999999999999999986

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.72  E-value=7.3e-18  Score=114.55  Aligned_cols=51  Identities=22%  Similarity=0.363  Sum_probs=49.4

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEee
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERV   52 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~   52 (175)
                      |+++|+||+|++++|+|||| |+|++|+++|||+||++.+.+|+++|++|.+
T Consensus        20 i~~~g~p~~V~~~~~~kpgk~G~a~~r~k~k~i~tG~~~e~~~~s~d~vevP   71 (71)
T d1bkba1          20 VVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVP   71 (71)
T ss_dssp             EEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEC
T ss_pred             EEECCEEEEEEEEEEECCCCCCccEEEEEEEEeecCcEEEEEEcCCCEEeCC
Confidence            78999999999999999999 9999999999999999999999999999975

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.71  E-value=1.4e-17  Score=113.65  Aligned_cols=51  Identities=22%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEee
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERV   52 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~   52 (175)
                      +++||+||+|++++|+|||| |+|++|+++|||+||++.|++|+++|++|.+
T Consensus        21 i~~~g~p~~V~e~~~~kpGk~G~A~~r~k~kni~tG~~~e~~~~s~d~vevP   72 (73)
T d2eifa1          21 VMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVP   72 (73)
T ss_dssp             EEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEE
T ss_pred             EEECCEEEEEEEEEEECCCCcccEEEEEEEEEEecCcEEEEEEcCCCEEecc
Confidence            78999999999999999999 8899999999999999999999999999986

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=99.18  E-value=4.6e-11  Score=79.69  Aligned_cols=51  Identities=27%  Similarity=0.350  Sum_probs=46.6

Q ss_pred             eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEee
Q 030538            2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERV   52 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~   52 (175)
                      ++++|+||+|++++.+|||| |+|.+|+...+|+||++.+...++.++++.+
T Consensus        16 v~i~g~PCkI~~istSk~GKHGhaK~~i~~idIFtgkK~~~v~P~~~~v~vP   67 (68)
T d1x6oa1          16 VCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVP   67 (68)
T ss_dssp             EEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred             EEECCEeeEEEEEeecCCCcccccEEEEEEEEcccCCEEEEEccCCceeecC
Confidence            78999999999999999999 9999999999999999999999999999976

>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.27  E-value=1.7e-06  Score=55.43  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=44.1

Q ss_pred             EEeeEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhhccCCCCEEEEEEECCEE
Q 030538           54 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA  109 (175)
Q Consensus        54 le~~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~~  109 (175)
                      ++||..|.+...|+..++||+||||.+++|..  ++ ..=|++|.+|...-.-|+-
T Consensus         1 IeKk~aQVlsi~G~~vq~MD~etyetf~l~ip--e~-~~~l~~G~eVeY~e~mGr~   53 (59)
T d2eifa2           1 IDRRKGQVLAIMGDMVQIMDLQTYETLELPIP--EG-IEGLEPGGEVEYIEAVGQY   53 (59)
T ss_dssp             EEEEEEEEEEEETTEEEEEETTTCCEEEEECC--SC-CTTCSTTCEEEEEEETTEE
T ss_pred             CccceeEEEEEcCCeEEEeeCCcceeEEEeCc--ch-hccCCCCCEEEEeeccCcE
Confidence            68999999999999999999999999999864  22 2339999999976666653

>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.23  E-value=2.1e-06  Score=56.04  Aligned_cols=56  Identities=20%  Similarity=0.259  Sum_probs=46.2

Q ss_pred             EEeeEEEEEEeeCCEEEEEeCCCcceeecCchhh-hchhhccCCCCEEEEEEECCEE
Q 030538           54 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVF-GKAGAYLQEGMKVWLQLYDGRA  109 (175)
Q Consensus        54 le~~~~qylY~Dgd~~vFMD~etyeqi~l~~~~l-gd~~~~L~eg~~v~v~~~~~~~  109 (175)
                      ++||..|.|...||..++||+||||.++||.+.. ++...-|++|.+|...-.-|+.
T Consensus         2 IeK~~aQVlsi~Gd~vq~MD~etyetfelpm~~~~ee~~~~l~~G~eVeywe~mGr~   58 (65)
T d1bkba2           2 IEKFTAQILSVSGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRY   58 (65)
T ss_dssp             CEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEE
T ss_pred             ccccceeEEEEcCCeEEEeecCcceeEEecCCCCChHHHhccCCCCEEEEEeecCcE
Confidence            6899999999999999999999999999986433 3455678999999865555653

>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.15  E-value=3.6e-06  Score=55.19  Aligned_cols=56  Identities=30%  Similarity=0.442  Sum_probs=47.0

Q ss_pred             EEeeEEEEEEeeCCEEEEEeCCCcceeecCch--hhhchhhccCCCCEEEEEEECCEE
Q 030538           54 VEDKSFTCLYTENDTAFVIESETFEQLEVPLD--VFGKAGAYLQEGMKVWLQLYDGRA  109 (175)
Q Consensus        54 le~~~~qylY~Dgd~~vFMD~etyeqi~l~~~--~lgd~~~~L~eg~~v~v~~~~~~~  109 (175)
                      ++||..|.|...|+..++||++|||.++||.+  .-++...=|.+|.+|...-.-|+-
T Consensus         1 IeKk~aQVlsi~Gd~vQ~MD~etyeTfelpi~~~v~ee~~~~l~~G~eVeYwe~mGr~   58 (67)
T d1iz6a2           1 IDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRI   58 (67)
T ss_dssp             CEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEE
T ss_pred             CccceeEEEEEcCCeEEEeecCCceeEEEecCCCccHHHHhccCCCCEEEEEeecCcE
Confidence            58999999999999999999999999999864  235666789999999966666754

>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

Probab=98.07  E-value=4.1e-06  Score=56.05  Aligned_cols=54  Identities=17%  Similarity=0.033  Sum_probs=47.3

Q ss_pred             eEEcCcEEEEEEeEEe-cCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEE
Q 030538            2 TLTTGKMYQVIDAEHK-QRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSF   59 (175)
Q Consensus         2 ~~~~g~~~~V~~~~h~-kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~   59 (175)
                      ++++|+||+|++++.+ ||||-    ++...||+||++.|+.-+.++....+.+++.--
T Consensus        20 v~i~g~PCkIv~istS~ktGKH----~~vgidIFtgkk~ed~~~vs~~~p~~vvq~~~g   74 (76)
T d1khia1          20 LILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLG   74 (76)
T ss_dssp             EEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEE
T ss_pred             EEECCcccEEEEEeeccCCCce----eEEEEeeccCcEeeecccccCCCCceeeeeeec
Confidence            7899999999999998 89984    788999999999999988888888777777543

>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=81.49  E-value=1.7  Score=28.20  Aligned_cols=59  Identities=15%  Similarity=0.237  Sum_probs=39.4

Q ss_pred             EEeeEEEEEEeeCC-------EEEEEeC--CCcceeecCc-hhhhchhh-ccCCCCEEEE--EEEC--CEEEEE
Q 030538           54 VEDKSFTCLYTEND-------TAFVIES--ETFEQLEVPL-DVFGKAGA-YLQEGMKVWL--QLYD--GRALSG  112 (175)
Q Consensus        54 le~~~~qylY~Dgd-------~~vFMD~--etyeqi~l~~-~~lgd~~~-~L~eg~~v~v--~~~~--~~~i~v  112 (175)
                      +.|.+||.+-.+.|       +..+|+.  ++-|++.||+ ..++..++ -..+|..+.|  +.-=  .+++++
T Consensus         1 Vkr~eYqlidI~~d~d~s~dGflsLm~d~G~treDlkLP~d~elg~~I~~~f~~gkdl~VtVlsAmGEE~iia~   74 (79)
T d1x6oa2           1 VKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVSAMGTEQVLQT   74 (79)
T ss_dssp             CEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             CccceeEEEeeccCCccCCCcEEEEEcCCCCcccccCCCCchHHHHHHHHHHhCCCcEEEEEehhCCccceeee
Confidence            35789999999754       6679997  6899999974 45776653 4467755444  4333  345554