Citrus Sinensis ID: 030552

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN
ccccccccccccccccccEEEEEccccccccEEEEccccccccEEccccccccccEEEEEEEcccccccccEEEEEEEEEcccEEEEEEEcccccccccEEEEEEEEEEEEccccEEEEEcccccEEEcccccccHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEcccccc
ccccccccccccccccccccHHHHHHHHcccEEEEEcccccccccccccccccccEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEcccEEEEEcEEEEEEEEEEEEcccEEEEEcccccccHHccccccHHHHHHHHHHHHccccEEEEEEHHccHHHHEEHHcccccc
msdeehhfeskadagasktfpqqagtirkngyiviknrpckpqvfkfpsfslhskqvvevstsktgkhghakchfvgidifngkkledivpsshncdaphvtrtdyqlidisEDGFVSLLTetgntkddlrlptdenLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN
msdeehhfeskadagasktfpqqagtiRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVStsktgkhghakCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTEtgntkddlrlptDENLLSQIKDGFAEGKDLVVTVMSSMGeeqicalkdigpkn
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN
*************************TIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNT***LRL****NLLSQIKDGFAEGKDLVVTVMSSM***QICA********
******H***********TFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEV*******HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG***
*****************KTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN
*****************KTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDI****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query175 2.2.26 [Sep-21-2011]
Q9AXJ4160 Eukaryotic translation in N/A no 0.914 1.0 0.874 2e-84
Q9AXQ5160 Eukaryotic translation in N/A no 0.914 1.0 0.834 4e-80
P24922159 Eukaryotic translation in N/A no 0.908 1.0 0.839 6e-80
P56335160 Eukaryotic translation in N/A no 0.914 1.0 0.828 2e-79
P69040159 Eukaryotic translation in N/A no 0.908 1.0 0.821 4e-79
P69039159 Eukaryotic translation in N/A no 0.908 1.0 0.821 4e-79
Q9AXQ4159 Eukaryotic translation in N/A no 0.908 1.0 0.839 6e-79
P56337159 Eukaryotic translation in N/A no 0.908 1.0 0.816 1e-78
Q9AXQ6159 Eukaryotic translation in N/A no 0.908 1.0 0.816 1e-78
Q945F4159 Eukaryotic translation in N/A no 0.908 1.0 0.816 2e-78
>sp|Q9AXJ4|IF5A_MANES Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2 Back     alignment and function desciption
 Score =  311 bits (796), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/175 (87%), Positives = 158/175 (90%), Gaps = 15/175 (8%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEV 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCK               V+EV
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCK---------------VMEV 45

Query: 61  STSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 120
           STSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLL
Sbjct: 46  STSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

Query: 121 TETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 175
           TETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVV+VMS+MGEE+IC+LKDIGPKN
Sbjct: 106 TETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160
The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.
Manihot esculenta (taxid: 3983)
>sp|Q9AXQ5|IF5A2_SOLLC Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P24922|IF5A2_NICPL Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1 Back     alignment and function description
>sp|P56335|IF5A3_SOLTU Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1 Back     alignment and function description
>sp|P69040|IF5A1_TOBAC Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1 Back     alignment and function description
>sp|P69039|IF5A1_NICPL Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1 Back     alignment and function description
>sp|Q9AXQ4|IF5A3_SOLLC Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P56337|IF5A5_SOLTU Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1 Back     alignment and function description
>sp|Q9AXQ6|IF5A1_SOLLC Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q945F4|IF5A2_MEDSA Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
255542136 509 initiation factor 5a, putative [Ricinus 0.908 0.312 0.890 6e-84
33325127159 eukaryotic translation initiation factor 0.908 1.0 0.890 3e-83
33325123160 eukaryotic translation initiation factor 0.914 1.0 0.88 3e-83
33325117160 eukaryotic translation initiation factor 0.914 1.0 0.88 4e-83
33325129159 eukaryotic translation initiation factor 0.908 1.0 0.885 8e-83
20138704160 RecName: Full=Eukaryotic translation ini 0.914 1.0 0.874 9e-83
33325131158 eukaryotic translation initiation factor 0.902 1.0 0.890 1e-82
33325121160 eukaryotic translation initiation factor 0.914 1.0 0.874 2e-82
13094963160 initiation factor eIF5-A [Manihot escule 0.914 1.0 0.868 3e-82
255576979160 initiation factor 5a, putative [Ricinus 0.914 1.0 0.874 5e-82
>gi|255542136|ref|XP_002512132.1| initiation factor 5a, putative [Ricinus communis] gi|223549312|gb|EEF50801.1| initiation factor 5a, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  315 bits (806), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 155/174 (89%), Positives = 156/174 (89%), Gaps = 15/174 (8%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEV 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKNRPCK               VVEV
Sbjct: 351 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK---------------VVEV 395

Query: 61  STSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 120
           STSKTGKHGHAKCHFVGIDIFN KKLEDIVPSSHNCD PHVTRTDYQLIDISEDGFVSLL
Sbjct: 396 STSKTGKHGHAKCHFVGIDIFNAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 455

Query: 121 TETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 174
           TE GNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK
Sbjct: 456 TENGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|33325127|gb|AAQ08196.1| eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|33325123|gb|AAQ08194.1| eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|33325117|gb|AAQ08191.1| eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis] gi|33325119|gb|AAQ08192.1| eukaryotic translation initiation factor 5A isoform II [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|33325129|gb|AAQ08197.1| eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|20138704|sp|Q9AXJ4.2|IF5A_MANES RecName: Full=Eukaryotic translation initiation factor 5A; Short=eIF-5A gi|14193249|gb|AAK55848.1|AF266464_1 translation initiation factor 5A [Manihot esculenta] Back     alignment and taxonomy information
>gi|33325131|gb|AAQ08198.1| eukaryotic translation initiation factor 5A isoform VIII [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|33325121|gb|AAQ08193.1| eukaryotic translation initiation factor 5A isoform III [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|13094963|gb|AAK12100.1|AF323604_1 initiation factor eIF5-A [Manihot esculenta] Back     alignment and taxonomy information
>gi|255576979|ref|XP_002529374.1| initiation factor 5a, putative [Ricinus communis] gi|223531122|gb|EEF32970.1| initiation factor 5a, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
TAIR|locus:2014784158 ELF5A-1 "eukaryotic elongation 0.902 1.0 0.781 6.5e-67
TAIR|locus:2007176158 ELF5A-3 "eukaryotic elongation 0.902 1.0 0.747 2.5e-65
TAIR|locus:2200570159 FBR12 "FUMONISIN B1-RESISTANT1 0.891 0.981 0.709 2.1e-61
SGD|S000003808157 ANB1 "Translation elongation f 0.891 0.993 0.525 4e-42
SGD|S000000760157 HYP2 "Translation elongation f 0.868 0.968 0.535 5.2e-42
POMBASE|SPBC336.10c169 tif512 "translation elongation 0.868 0.899 0.532 8.4e-42
POMBASE|SPAC26H5.10c157 tif51 "translation elongation 0.868 0.968 0.526 1.4e-41
CGD|CAL0004932157 ANB1 [Candida albicans (taxid: 0.868 0.968 0.526 3.6e-41
ZFIN|ZDB-GENE-040426-2229155 eif5a "eukaryotic translation 0.862 0.974 0.526 7.5e-41
GENEDB_PFALCIPARUM|PFL0210c161 PFL0210c "eukaryotic initiatio 0.868 0.944 0.517 1.2e-40
TAIR|locus:2014784 ELF5A-1 "eukaryotic elongation factor 5A-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 136/174 (78%), Positives = 146/174 (83%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEV 60
             MSDEEHHFES +DAGASKT+PQQAGTIRKNGYIVIKNRPCK               VVEV
Sbjct:     1 MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCK---------------VVEV 44

Query:    61 STSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 120
             STSKTGKHGHAKCHFV IDIF  KKLEDIVPSSHNCD PHV RTDYQLIDISEDG+VSLL
Sbjct:    45 STSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLL 104

Query:   121 TETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 174
             T+ G+TKDDL+LP D+ LL QIK GF +GKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:   105 TDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158
GO:0003723 "RNA binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0003746 "translation elongation factor activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006413 "translational initiation" evidence=ISS
GO:0006452 "translational frameshifting" evidence=IEA
GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA
GO:0043022 "ribosome binding" evidence=IEA
GO:0045901 "positive regulation of translational elongation" evidence=IEA
GO:0045905 "positive regulation of translational termination" evidence=IEA
GO:0010089 "xylem development" evidence=IMP
TAIR|locus:2007176 ELF5A-3 "eukaryotic elongation factor 5A-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200570 FBR12 "FUMONISIN B1-RESISTANT12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000003808 ANB1 "Translation elongation factor eIF-5A" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
SGD|S000000760 HYP2 "Translation elongation factor eIF-5A" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC336.10c tif512 "translation elongation factor eIF5A (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPAC26H5.10c tif51 "translation elongation factor eIF5A (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0004932 ANB1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2229 eif5a "eukaryotic translation initiation factor 5A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFL0210c PFL0210c "eukaryotic initiation factor 5a, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R898IF5A2_PONABNo assigned EC number0.5250.81710.9346yesno
Q93VP3IF5A2_ARATHNo assigned EC number0.70930.89140.9811nono
Q9GZV4IF5A2_HUMANNo assigned EC number0.5250.81710.9346yesno
P69039IF5A1_NICPLNo assigned EC number0.82180.90851.0N/Ano
Q07460IF5A2_CHICKNo assigned EC number0.51250.81710.9346yesno
Q9SC12IF5A_SENVENo assigned EC number0.82180.90851.0N/Ano
P56289IF5A1_SCHPONo assigned EC number0.51760.87420.9745yesno
P23301IF5A1_YEASTNo assigned EC number0.53520.86850.9681yesno
P80639IF5A_MAIZENo assigned EC number0.80570.90850.9937N/Ano
Q9UST4IF5A2_SCHPONo assigned EC number0.52350.87420.9053yesno
P13651IF5A_DICDINo assigned EC number0.450.81710.8993yesno
P56337IF5A5_SOLTUNo assigned EC number0.81600.90851.0N/Ano
P56336IF5A4_SOLTUNo assigned EC number0.82750.90851.0N/Ano
P56335IF5A3_SOLTUNo assigned EC number0.82850.91421.0N/Ano
P69040IF5A1_TOBACNo assigned EC number0.82180.90851.0N/Ano
P56333IF5A1_SOLTUNo assigned EC number0.80570.91421.0N/Ano
Q945F4IF5A2_MEDSANo assigned EC number0.81600.90851.0N/Ano
P24922IF5A2_NICPLNo assigned EC number0.83900.90851.0N/Ano
Q8BGY2IF5A2_MOUSENo assigned EC number0.5250.81710.9346yesno
Q9XI91IF5A1_ARATHNo assigned EC number0.78160.90281.0yesno
P62925IF5A_SPOFRNo assigned EC number0.52350.86850.95N/Ano
P62924IF5A_SPOEXNo assigned EC number0.52350.86850.95N/Ano
Q9AXQ4IF5A3_SOLLCNo assigned EC number0.83900.90851.0N/Ano
Q9AXQ5IF5A2_SOLLCNo assigned EC number0.83420.91421.0N/Ano
Q9AXQ6IF5A1_SOLLCNo assigned EC number0.81600.90851.0N/Ano
Q9AXQ7IF5A_DIACANo assigned EC number0.73090.89140.975N/Ano
Q9AXQ3IF5A4_SOLLCNo assigned EC number0.81030.90850.9937N/Ano
Q9C505IF5A3_ARATHNo assigned EC number0.74710.90281.0nono
O94083IF5A_CANALNo assigned EC number0.52630.86850.9681N/Ano
P26564IF5A1_MEDSANo assigned EC number0.81250.91420.9937N/Ano
Q9GU68IF5A_DROMENo assigned EC number0.49110.86850.9559yesno
Q9AXJ4IF5A_MANESNo assigned EC number0.87420.91421.0N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
PLN03107159 PLN03107, PLN03107, eukaryotic translation initiat 1e-107
PTZ00328166 PTZ00328, PTZ00328, eukaryotic initiation factor 5 8e-45
TIGR00037130 TIGR00037, eIF_5A, translation elongation factor I 2e-37
pfam0128769 pfam01287, eIF-5a, Eukaryotic elongation factor 5A 4e-33
cd0446869 cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translatio 2e-29
COG0231131 COG0231, Efp, Translation elongation factor P (EF- 2e-21
PRK03999129 PRK03999, PRK03999, translation initiation factor 2e-16
cd0446975 cd04469, S1_Hex1, S1_Hex1: Hex1, S1-like RNA-bindi 2e-04
>gnl|CDD|215580 PLN03107, PLN03107, eukaryotic translation initiation factor 5A; Provisional Back     alignment and domain information 
 Score =  302 bits (776), Expect = e-107
 Identities = 140/175 (80%), Positives = 147/175 (84%), Gaps = 17/175 (9%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEV 60
           MSDEEHHFES ADAGASKT+PQQAGTIRK GYIVIK RPCK               VVEV
Sbjct: 1   MSDEEHHFES-ADAGASKTYPQQAGTIRKGGYIVIKGRPCK---------------VVEV 44

Query: 61  STSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 120
           STSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSL+
Sbjct: 45  STSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLM 104

Query: 121 TETGNTKDDLRLPT-DENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 174
            E+GNTKDDL+LPT D+ L  QIKDGF EGKDLVVTVMS+MGEEQICALK+IGPK
Sbjct: 105 DESGNTKDDLKLPTEDDTLAEQIKDGFDEGKDLVVTVMSAMGEEQICALKEIGPK 159

Length = 159
>gnl|CDD|140349 PTZ00328, PTZ00328, eukaryotic initiation factor 5a; Provisional Back     alignment and domain information
>gnl|CDD|129148 TIGR00037, eIF_5A, translation elongation factor IF5A Back     alignment and domain information
>gnl|CDD|216413 pfam01287, eIF-5a, Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Back     alignment and domain information
>gnl|CDD|239914 cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain Back     alignment and domain information
>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235193 PRK03999, PRK03999, translation initiation factor IF-5A; Provisional Back     alignment and domain information
>gnl|CDD|239915 cd04469, S1_Hex1, S1_Hex1: Hex1, S1-like RNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 175
PTZ00328166 eukaryotic initiation factor 5a; Provisional 100.0
PLN03107159 eukaryotic translation initiation factor 5A; Provi 100.0
KOG3271156 consensus Translation initiation factor 5A (eIF-5A 100.0
TIGR00037130 eIF_5A translation initiation factor eIF-5A. Obser 100.0
PRK03999129 translation initiation factor IF-5A; Provisional 100.0
COG0231131 Efp Translation elongation factor P (EF-P)/transla 100.0
PRK12426185 elongation factor P; Provisional 100.0
PRK14578187 elongation factor P; Provisional 100.0
PRK00529186 elongation factor P; Validated 100.0
TIGR00038184 efp translation elongation factor P. function: inv 100.0
PRK04542189 elongation factor P; Provisional 99.98
TIGR02178186 yeiP elongation factor P-like protein YeiP. This m 99.97
PF0820758 EFP_N: Elongation factor P (EF-P) KOW-like domain; 99.73
PF0128769 eIF-5a: Eukaryotic elongation factor 5A hypusine, 99.69
cd0446869 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati 99.67
cd0446975 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. 99.65
cd0447061 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo 99.46
PF0113255 EFP: Elongation factor P (EF-P) OB domain; InterPr 99.37
cd0446355 S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin 99.13
cd0446757 S1_aIF5A S1_aIF5A: Archaeal translation Initiation 98.39
COG1499355 NMD3 NMD protein affecting ribosome stability and 96.21
>PTZ00328 eukaryotic initiation factor 5a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-52  Score=340.49  Aligned_cols=159  Identities=46%  Similarity=0.836  Sum_probs=153.0

Q ss_pred             CCcccccccc-ccCCCcceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEe
Q 030552            1 MSDEEHHFES-KADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGID   79 (175)
Q Consensus         1 m~~~~~~f~~-~~~~~~s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~n   79 (175)
                      |||+||+|++ +++||+|.|||++|++||+|+||+|+|+||+               |++++++|||||||||||++++|
T Consensus         1 m~d~~~~f~~~~~~~gas~t~p~q~~~LkkG~yvvIkGrPCK---------------IveistSKtGKHGhAK~~ivaid   65 (166)
T PTZ00328          1 MSDEDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCK---------------VIDLSVSKTGKHGHAKVSIVATD   65 (166)
T ss_pred             CCccccccccccCCCCCCceecccccceeECCEEEECCeeeE---------------EEEEecCCCCcCCceEEEEEEEe
Confidence            8997889996 7999999999999999999999999999999               99999999999999999999999


Q ss_pred             ccCCcEEEEeecCCCceecceEEeeeeEEEEecCC------ccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEE
Q 030552           80 IFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISED------GFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLV  153 (175)
Q Consensus        80 i~TGk~~e~~~~s~~~~e~p~v~r~~~q~ly~d~d------~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~  153 (175)
                      ||||+++|+++|++||+++|.|+|++||+|++++|      ||++|||++|++|++++||.+.+|..+++..|.+|++|.
T Consensus        66 IFTgkK~edi~Ps~hnv~VP~V~r~~yqli~I~~d~~~~~~g~v~LMd~~g~~k~dl~lp~~~el~~~ik~~f~~g~ev~  145 (166)
T PTZ00328         66 IFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPSLPAHLSLMDDEGESREDLDMPPDAALATQIKEQFDSGKEVL  145 (166)
T ss_pred             cCCCCEEeeecCccceeEeeeEEeeEEEEEEEcCCCcccccceEEEEcCCCCeeecccCCChhHHHHHHHHHhcCCCeEE
Confidence            99999999999999999999999999999999887      799999999999999999985568889999999999999


Q ss_pred             EEEEeeCCeeeEEEEeecCCC
Q 030552          154 VTVMSSMGEEQICALKDIGPK  174 (175)
Q Consensus       154 V~~~~~mGeE~v~~~k~~~~~  174 (175)
                      |++|++||+|+|+++|++++|
T Consensus       146 v~vi~amG~e~ii~~k~~~~~  166 (166)
T PTZ00328        146 VVVVSAMGTEQVLQTKNAAEK  166 (166)
T ss_pred             EEEEhhCCeeehheehhhhcC
Confidence            999999999999999998765

>PLN03107 eukaryotic translation initiation factor 5A; Provisional Back     alignment and domain information
>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00037 eIF_5A translation initiation factor eIF-5A Back     alignment and domain information
>PRK03999 translation initiation factor IF-5A; Provisional Back     alignment and domain information
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12426 elongation factor P; Provisional Back     alignment and domain information
>PRK14578 elongation factor P; Provisional Back     alignment and domain information
>PRK00529 elongation factor P; Validated Back     alignment and domain information
>TIGR00038 efp translation elongation factor P Back     alignment and domain information
>PRK04542 elongation factor P; Provisional Back     alignment and domain information
>TIGR02178 yeiP elongation factor P-like protein YeiP Back     alignment and domain information
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors Back     alignment and domain information
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands [] Back     alignment and domain information
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain Back     alignment and domain information
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain Back     alignment and domain information
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet [] Back     alignment and domain information
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain Back     alignment and domain information
>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain Back     alignment and domain information
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
3hks_A167 Crystal Structure Of Eukaryotic Translation Initiat 3e-63
3er0_A167 Crystal Structure Of The Full Length Eif5a From Sac 8e-46
3cpf_A138 Crystal Structure Of Human Eukaryotic Translation I 5e-38
1x6o_A174 Structural Analysis Of Leishmania Braziliensis Euka 5e-34
1xtd_A174 Structural Analysis Of Leishmania Mexicana Eukaryot 6e-31
1iz6_A138 Crystal Structure Of Translation Initiation Factor 9e-10
2eif_A136 Eukaryotic Translation Initiation Factor 5a From Me 1e-08
1eif_A135 Eukaryotic Translation Initiation Factor 5a From Me 1e-08
1bkb_A136 Initiation Factor 5a From Archebacterium Pyrobaculu 2e-08
1khi_A176 Crystal Structure Of Hex1 Length = 176 1e-06
>pdb|3HKS|A Chain A, Crystal Structure Of Eukaryotic Translation Initiation Factor Eif-5a2 From Arabidopsis Thaliana Length = 167 Back     alignment and structure 
Iteration: 1

 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/165 (70%), Positives = 135/165 (81%), Gaps = 16/165 (9%)
Query: 8   FESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGK 67
           FE+ +++GASKT+PQ AG IRK G+IVIKNRPCK               VVEVSTSKTGK
Sbjct: 16  FEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCK---------------VVEVSTSKTGK 59
Query: 68  HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTK 127
           HGHAKCHFV IDIF  KKLEDIVPSSHNCD PHV R DYQLIDI+EDGFVSLLT++G TK
Sbjct: 60  HGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTK 119
Query: 128 DDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 172
           DDL+LPTD+ L +Q++ GF EGKD+VV+VMSSMGEEQICA+K++G
Sbjct: 120 DDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 164
>pdb|3ER0|A Chain A, Crystal Structure Of The Full Length Eif5a From Saccharomyces Cerevisiae Length = 167 Back     alignment and structure
>pdb|3CPF|A Chain A, Crystal Structure Of Human Eukaryotic Translation Initiation Factor Eif5a Length = 138 Back     alignment and structure
>pdb|1X6O|A Chain A, Structural Analysis Of Leishmania Braziliensis Eukaryotic Initiation Factor 5a Length = 174 Back     alignment and structure
>pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic Initiation Factor 5a Length = 174 Back     alignment and structure
>pdb|1IZ6|A Chain A, Crystal Structure Of Translation Initiation Factor 5a From Pyrococcus Horikoshii Length = 138 Back     alignment and structure
>pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 136 Back     alignment and structure
>pdb|1EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 135 Back     alignment and structure
>pdb|1BKB|A Chain A, Initiation Factor 5a From Archebacterium Pyrobaculum Aerophilum Length = 136 Back     alignment and structure
>pdb|1KHI|A Chain A, Crystal Structure Of Hex1 Length = 176 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
3hks_A167 EIF-5A-2, eukaryotic translation initiation factor 9e-66
1x6o_A174 Eukaryotic initiation factor 5A; SGPP, structural 4e-61
3er0_A167 Eukaryotic translation initiation factor 5A-2; yea 1e-54
1khi_A176 HEX1; membrane sealing, peroxisomal target, struct 2e-53
3cpf_A138 Eukaryotic translation initiation factor 5A-1; str 4e-52
1iz6_A138 Initiation factor 5A; SH3-like barrel, OB fold, bi 5e-49
1bkb_A136 Translation initiation factor 5A; 1.75A {Pyrobacul 3e-43
2eif_A136 IF-5A, protein (eukaryotic translation initiation 4e-42
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167 Back     alignment and structure
 Score =  197 bits (503), Expect = 9e-66
 Identities = 122/172 (70%), Positives = 142/172 (82%), Gaps = 16/172 (9%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEV 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIKNRPCK               VVEV
Sbjct: 9   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCK---------------VVEV 52

Query: 61  STSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 120
           STSKTGKHGHAKCHFV IDIF  KKLEDIVPSSHNCD PHV R DYQLIDI+EDGFVSLL
Sbjct: 53  STSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLL 112

Query: 121 TETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 172
           T++G TKDDL+LPTD+ L +Q++ GF EGKD+VV+VMSSMGEEQICA+K++G
Sbjct: 113 TDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 164
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Length = 174 Back     alignment and structure
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Length = 167 Back     alignment and structure
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Length = 176 Back     alignment and structure
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138 Back     alignment and structure
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138 Back     alignment and structure
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136 Back     alignment and structure
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
3hks_A167 EIF-5A-2, eukaryotic translation initiation factor 100.0
3er0_A167 Eukaryotic translation initiation factor 5A-2; yea 100.0
1x6o_A174 Eukaryotic initiation factor 5A; SGPP, structural 100.0
3cpf_A138 Eukaryotic translation initiation factor 5A-1; str 100.0
1iz6_A138 Initiation factor 5A; SH3-like barrel, OB fold, bi 100.0
1bkb_A136 Translation initiation factor 5A; 1.75A {Pyrobacul 100.0
2eif_A136 IF-5A, protein (eukaryotic translation initiation 100.0
1khi_A176 HEX1; membrane sealing, peroxisomal target, struct 100.0
3a5z_B191 EF-P, elongation factor P; aminoacyl-tRNA syntheta 100.0
1ueb_A184 EF-P, TT0860, elongation factor P; beta barrel, ri 100.0
3tre_A191 EF-P, elongation factor P; protein synthesis, tran 100.0
1yby_A215 Translation elongation factor P; conserved hypothe 100.0
3oyy_A191 EF-P, elongation factor P; translation; 1.75A {Pse 100.0
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.7e-53  Score=344.80  Aligned_cols=157  Identities=78%  Similarity=1.246  Sum_probs=133.4

Q ss_pred             CCccccccccccCCCcceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEec
Q 030552            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDI   80 (175)
Q Consensus         1 m~~~~~~f~~~~~~~~s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni   80 (175)
                      |||.||+|+ +++||||.||||+|++||+|++|+|+|+||+               |++++|+||||||+|+||+++|||
T Consensus         9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~---------------Vve~~~~KpGKhG~A~vr~k~knl   72 (167)
T 3hks_A            9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCK---------------VVEVSTSKTGKHGHAKCHFVAIDI   72 (167)
T ss_dssp             ----------------CCEEEEEGGGCCTTSEEEETTEEEE---------------EEEEEEECSSTTCCCEEEEEEEET
T ss_pred             cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEE---------------EEEEEEeCCCCCCceEEEEEEEEc
Confidence            899999999 9999999999999999999999999999999               999999999999999999999999


Q ss_pred             cCCcEEEEeecCCCceecceEEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEeeC
Q 030552           81 FNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSM  160 (175)
Q Consensus        81 ~TGk~~e~~~~s~~~~e~p~v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~~m  160 (175)
                      +||+++|++|||++++++|+|+|++|||||+++|++|+|||++||++.+++||.+++|.++++.||++|++|.|++|++|
T Consensus        73 ~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~~m  152 (167)
T 3hks_A           73 FTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSM  152 (167)
T ss_dssp             TTCCEEEEEEETTSEEEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEEET
T ss_pred             CCCCEEEEEEcCCCEEEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEeeC
Confidence            99999999999999999999999999999997766899999999955557899874466668899999999999999999


Q ss_pred             CeeeEEEEeecCC
Q 030552          161 GEEQICALKDIGP  173 (175)
Q Consensus       161 GeE~v~~~k~~~~  173 (175)
                      |+|+|+++|++.+
T Consensus       153 g~e~i~~~k~~~~  165 (167)
T 3hks_A          153 GEEQICAVKEVGG  165 (167)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CeEEEEEEEecCC
Confidence            9999999998654
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Back     alignment and structure
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Back     alignment and structure
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Back     alignment and structure
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Back     alignment and structure
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Back     alignment and structure
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Back     alignment and structure
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 175
d1x6oa279 b.40.4.5 (A:87-165) C-terminal domain of eukaryoti 7e-34
d1x6oa168 b.34.5.2 (A:19-86) Eukaryotic initiation translati 2e-30
d1khia271 b.40.4.5 (A:103-173) C-terminal domain of eIF5a ho 4e-27
d1khia176 b.34.5.2 (A:27-102) Woronin body major protein (He 1e-23
d2eifa173 b.34.5.2 (A:1-73) Eukaryotic initiation translatio 6e-19
d1iz6a169 b.34.5.2 (A:2-70) Eukaryotic initiation translatio 3e-17
d1bkba171 b.34.5.2 (A:4-74) Eukaryotic initiation translatio 6e-17
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 79 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

 Score =  112 bits (282), Expect = 7e-34
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 6/76 (7%)

Query: 101 VTRTDYQLIDISED------GFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVV 154
           V    Y ++DI  +        +SL+ + G +++DL +P D  L +QIK+ F  GKD++V
Sbjct: 1   VKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLV 60

Query: 155 TVMSSMGEEQICALKD 170
            V+S+MG EQ+   K+
Sbjct: 61  VVVSAMGTEQVLQTKN 76
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 68 Back     information, alignment and structure
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 71 Back     information, alignment and structure
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 76 Back     information, alignment and structure
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73 Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69 Back     information, alignment and structure
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
d1x6oa168 Eukaryotic initiation translation factor 5a (eIF5a 99.94
d2eifa173 Eukaryotic initiation translation factor 5a (eIF5a 99.91
d1bkba171 Eukaryotic initiation translation factor 5a (eIF5a 99.9
d1iz6a169 Eukaryotic initiation translation factor 5a (eIF5a 99.89
d1khia176 Woronin body major protein (Hex1) {Filamentous fun 99.86
d1ueba163 Elongation factor P N-terminal domain {Thermus the 99.75
d1x6oa279 C-terminal domain of eukaryotic initiation transla 99.74
d1khia271 C-terminal domain of eIF5a homologue (Hex1) {Filam 99.66
d1ueba263 Elongation factor P middle and C-terminal domains 99.48
d1iz6a267 C-terminal domain of eukaryotic initiation transla 98.72
d1bkba265 C-terminal domain of eukaryotic initiation transla 98.61
d2eifa259 C-terminal domain of eukaryotic initiation transla 98.49
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=99.94  E-value=4.3e-27  Score=164.10  Aligned_cols=68  Identities=56%  Similarity=1.040  Sum_probs=62.4

Q ss_pred             eeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCcee
Q 030552           18 KTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD   97 (175)
Q Consensus        18 ~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~e   97 (175)
                      .|||++|++||+|+||+|+|+||+               |++++++|||||||||+|+.++|||||+++++.+|++|+++
T Consensus         1 ~T~p~~~~~lkkG~yv~i~g~PCk---------------I~~istSk~GKHGhaK~~i~~idIFtgkK~~~v~P~~~~v~   65 (68)
T d1x6oa1           1 KTYPLAAGALKKGGYVCINGRPCK---------------VIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVE   65 (68)
T ss_dssp             CEEEEEGGGCCTTCEEEETTEEEE---------------EEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEE
T ss_pred             CceeeEcceeeECCEEEECCEeeE---------------EEEEeecCCCcccccEEEEEEEEcccCCEEEEEccCCceee
Confidence            499999999999999999999999               99999999999999999999999999999999999999999


Q ss_pred             cce
Q 030552           98 APH  100 (175)
Q Consensus        98 ~p~  100 (175)
                      +|.
T Consensus        66 vP~   68 (68)
T d1x6oa1          66 VPF   68 (68)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            983
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Back     information, alignment and structure
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure