Citrus Sinensis ID: 030568

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLASRKPRTAT
cccccccccccccEEEEEEcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHcccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHccccccc
cccEcccccccccHHHccccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEcccccccHHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHcccccHHHcEEEEEEEEEEEEEccEEEEHHHEEEEccEEEEEEEEEEEccccccccccHHHHHHHcccccc
mvkyskepdnptksckargsdlrVHFKNTREAAHALRKLSLTKAKRYLEDVMAHkqaipftrfcrgvgrtaqaknrnpngqgrwpvkSAKFILDLLKNaesnaevkgldvdALYISHIQVNQAQKQRRRTYrahgrinpymsspchieltlsekeepvkkepetqlasrkprtat
mvkyskepdnptksckargsdlrvHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTaqaknrnpngqgrwpvKSAKFILDLLKNAESNAEVKGLDVDALYISHIQvnqaqkqrRRTYRAhgrinpymsspCHIELTlsekeepvkkepetqlasrkprtat
MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSekeepvkkepeTQLASRKPRTAT
*******************************AAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRT************RWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA*******YRAHGRINPY****C******************************
*VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE**********************
***************KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV***********RAHGRINPYMSSPCHIELTLSE**********************
******************GSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE*******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLASRKPRTAT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query175 2.2.26 [Sep-21-2011]
P51413175 60S ribosomal protein L17 yes no 0.994 0.994 0.873 9e-89
Q93VI3176 60S ribosomal protein L17 yes no 1.0 0.994 0.862 3e-88
P35266170 60S ribosomal protein L17 N/A no 0.954 0.982 0.856 3e-82
O48557171 60S ribosomal protein L17 N/A no 0.971 0.994 0.847 1e-81
P35267172 60S ribosomal protein L17 N/A no 0.971 0.988 0.829 1e-80
P37380183 60S ribosomal protein L17 N/A no 0.897 0.857 0.721 1e-61
P18621184 60S ribosomal protein L17 no no 0.942 0.896 0.664 6e-60
Q5XTY7184 60S ribosomal protein L17 N/A no 0.942 0.896 0.664 6e-60
P24049184 60S ribosomal protein L17 yes no 0.942 0.896 0.664 9e-60
Q3T025184 60S ribosomal protein L17 yes no 0.942 0.896 0.664 9e-60
>sp|P51413|RL172_ARATH 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2 Back     alignment and function desciption
 Score =  325 bits (833), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 152/174 (87%), Positives = 164/174 (94%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLASRKPRTA 174
           NQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKEPETQLA++  ++A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174

Arabidopsis thaliana (taxid: 3702)
>sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1 Back     alignment and function description
>sp|P35266|RL171_HORVU 60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|O48557|RL17_MAIZE 60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1 Back     alignment and function description
>sp|P35267|RL172_HORVU 60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|P37380|RL17_PODCA 60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1 Back     alignment and function description
>sp|P18621|RL17_HUMAN 60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3 Back     alignment and function description
>sp|Q5XTY7|RL17_FELCA 60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3 Back     alignment and function description
>sp|P24049|RL17_RAT 60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3 Back     alignment and function description
>sp|Q3T025|RL17_BOVIN 60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
255547740 1086 protein with unknown function [Ricinus c 0.994 0.160 0.891 8e-90
330318574186 ribosomal petrp-like protein [Camellia s 0.971 0.913 0.923 3e-89
147838177183 hypothetical protein VITISV_011749 [Viti 0.982 0.939 0.901 4e-89
225456299183 PREDICTED: 60S ribosomal protein L17-2-l 0.971 0.928 0.905 7e-89
225425462185 PREDICTED: 60S ribosomal protein L17-2-l 0.982 0.929 0.901 9e-89
297734406209 unnamed protein product [Vitis vinifera] 0.971 0.813 0.905 1e-88
388506208173 unknown [Lotus japonicus] gi|388522765|g 0.971 0.982 0.917 4e-88
449435065183 PREDICTED: 60S ribosomal protein L17-2-l 0.982 0.939 0.901 5e-88
449452899183 PREDICTED: 60S ribosomal protein L17-2-l 0.982 0.939 0.895 6e-88
351723205181 uncharacterized protein LOC100499784 [Gl 0.971 0.939 0.911 6e-88
>gi|255547740|ref|XP_002514927.1| protein with unknown function [Ricinus communis] gi|223545978|gb|EEF47481.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 156/175 (89%), Positives = 164/175 (93%), Gaps = 1/175 (0%)

Query: 1    MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
            +VKYS+EP+NPTKSCKARGSDLRVHFKNTRE A ALRKL LTKAKRYLEDVMAHKQAIPF
Sbjct: 903  LVKYSREPENPTKSCKARGSDLRVHFKNTRETAFALRKLPLTKAKRYLEDVMAHKQAIPF 962

Query: 61   TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
             RFC GVGRTAQAKNR+ NGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV
Sbjct: 963  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 1022

Query: 121  NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLA-SRKPRTA 174
            NQAQKQRRRTYRAHGRINPYMSSPCHIEL L+EKEE V+KEPETQLA S KP+ +
Sbjct: 1023 NQAQKQRRRTYRAHGRINPYMSSPCHIELILAEKEEAVRKEPETQLATSNKPKKS 1077

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|330318574|gb|AEC10957.1| ribosomal petrp-like protein [Camellia sinensis] Back     alignment and taxonomy information
>gi|147838177|emb|CAN74145.1| hypothetical protein VITISV_011749 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456299|ref|XP_002283698.1| PREDICTED: 60S ribosomal protein L17-2-like isoform 1 [Vitis vinifera] gi|359491070|ref|XP_003634214.1| PREDICTED: 60S ribosomal protein L17-2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425462|ref|XP_002279258.1| PREDICTED: 60S ribosomal protein L17-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734406|emb|CBI15653.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388506208|gb|AFK41170.1| unknown [Lotus japonicus] gi|388522765|gb|AFK49444.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449435065|ref|XP_004135316.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] gi|449494927|ref|XP_004159685.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452899|ref|XP_004144196.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] gi|449489236|ref|XP_004158255.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351723205|ref|NP_001235991.1| uncharacterized protein LOC100499784 [Glycine max] gi|255626495|gb|ACU13592.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
TAIR|locus:2197624175 AT1G67430 [Arabidopsis thalian 0.994 0.994 0.810 9.6e-73
TAIR|locus:2015929176 AT1G27400 [Arabidopsis thalian 1.0 0.994 0.8 4.1e-72
ZFIN|ZDB-GENE-030131-8585184 rpl17 "ribosomal protein L17" 0.862 0.820 0.671 1.7e-52
UNIPROTKB|E2R3D3184 LOC474501 "Uncharacterized pro 0.862 0.820 0.677 2.1e-52
UNIPROTKB|J3KRX5174 RPL17 "60S ribosomal protein L 0.862 0.867 0.677 2.1e-52
UNIPROTKB|J3QL51228 RPL17 "60S ribosomal protein L 0.862 0.662 0.677 2.1e-52
UNIPROTKB|J3QQT2171 RPL17 "60S ribosomal protein L 0.862 0.883 0.677 2.1e-52
UNIPROTKB|P18621184 RPL17 "60S ribosomal protein L 0.862 0.820 0.677 2.1e-52
UNIPROTKB|F1NG53187 RPL17 "Uncharacterized protein 0.862 0.807 0.677 2.7e-52
UNIPROTKB|H9L213184 RPL17 "Uncharacterized protein 0.862 0.820 0.677 2.7e-52
TAIR|locus:2197624 AT1G67430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 141/174 (81%), Positives = 153/174 (87%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MVKYS+EPDN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPF
Sbjct:     1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
             TRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct:    61 TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRKPRTA 174
             NQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA++  ++A
Sbjct:   121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2015929 AT1G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8585 rpl17 "ribosomal protein L17" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3D3 LOC474501 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J3KRX5 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3QL51 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3QQT2 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P18621 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG53 RPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9L213 RPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5I5J1RL17_PECGUNo assigned EC number0.60.90850.8688N/Ano
Q9HE25RL17_NEUCRNo assigned EC number0.54850.96570.9086N/Ano
Q46GA0RL22_METBFNo assigned EC number0.38810.83420.9668yesno
O59794RL17B_SCHPONo assigned EC number0.60270.82850.7754yesno
Q54NG2RL17_DICDINo assigned EC number0.59880.97140.9444yesno
Q6BM53RL17_DEBHANo assigned EC number0.56360.93710.8864yesno
Q8PV45RL22_METMANo assigned EC number0.38810.83420.9668yesno
P0DJ16RL17_TETTSNo assigned EC number0.56320.89710.8579N/Ano
Q93VI3RL171_ARATHNo assigned EC number0.86281.00.9943yesno
O48557RL17_MAIZENo assigned EC number0.84700.97140.9941N/Ano
P51413RL172_ARATHNo assigned EC number0.87350.99420.9942yesno
Q5MGD1RL17_LONONNo assigned EC number0.64670.94850.8877N/Ano
A0NGY0RL17_ANOGANo assigned EC number0.650.90850.8502yesno
P24049RL17_RATNo assigned EC number0.66460.94280.8967yesno
Q29IM3RL17_DROPSNo assigned EC number0.6250.90850.8548yesno
Q4UF75RL17_THEANNo assigned EC number0.56960.93710.8770yesno
Q3T025RL17_BOVINNo assigned EC number0.66460.94280.8967yesno
Q0PXV9RL17_DIACINo assigned EC number0.63030.93710.8864N/Ano
A8CAG3RL17_PHLPPNo assigned EC number0.65620.90850.8548N/Ano
Q4GXH5RL17_CARGRNo assigned EC number0.63290.89710.8626N/Ano
Q4GXH6RL17_BIPLUNo assigned EC number0.61230.99420.9613N/Ano
Q4GXH7RL17_AGRLINo assigned EC number0.64510.880.8191N/Ano
Q4KTG9RL17_SUBDONo assigned EC number0.67700.91420.8376N/Ano
A8AA19RL22_IGNH4No assigned EC number0.37670.83420.9182yesno
A5UL84RL22_METS3No assigned EC number0.38660.83420.9480yesno
Q09JW2RL17_ARGMONo assigned EC number0.68350.89710.8486N/Ano
A2I3Y6RL17_MACHINo assigned EC number0.61870.90850.8594N/Ano
P46990RL17B_YEASTNo assigned EC number0.59030.94280.8967yesno
Q6MY48RL17_ASPFUNo assigned EC number0.56440.92570.8350yesno
O14339RL17A_SCHPONo assigned EC number0.61640.82850.7754yesno
O28359RL22_ARCFUNo assigned EC number0.37580.83420.9419yesno
Q8TRU2RL22_METACNo assigned EC number0.36840.83420.9668yesno
O26115RL22_METTHNo assigned EC number0.35520.85140.9738yesno
Q4N4B9RL17_THEPANo assigned EC number0.56960.93710.8770yesno
P05740RL17A_YEASTNo assigned EC number0.59630.94280.8967yesno
Q9BL19RL17_CAEELNo assigned EC number0.68550.90280.8449yesno
Q5XTY7RL17_FELCANo assigned EC number0.66460.94280.8967N/Ano
P35266RL171_HORVUNo assigned EC number0.85620.95420.9823N/Ano
P35267RL172_HORVUNo assigned EC number0.82940.97140.9883N/Ano
P37380RL17_PODCANo assigned EC number0.72150.89710.8579N/Ano
Q6XJ13RL17_DROYANo assigned EC number0.63120.90850.8548N/Ano
Q12ZU6RL22_METBUNo assigned EC number0.39470.83420.9668yesno
Q1HR65RL17_AEDAENo assigned EC number0.63470.94850.8924N/Ano
Q4PM54RL17_IXOSCNo assigned EC number0.68350.89710.8486N/Ano
Q6CBS7RL17_YARLINo assigned EC number0.58080.94850.9021yesno
Q9W3W8RL17_DROMENo assigned EC number0.61070.94850.8924yesno
Q5UAS2RL17_BOMMONo assigned EC number0.65260.94850.8877N/Ano
Q5MIR6RL17_AEDALNo assigned EC number0.63470.94850.8924N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
PTZ00178181 PTZ00178, PTZ00178, 60S ribosomal protein L17; Pro 2e-90
TIGR01038150 TIGR01038, L22_arch, ribosomal protein L22(archaea 1e-65
PRK04223153 PRK04223, rpl22p, 50S ribosomal protein L22P; Revi 7e-45
cd00336105 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e 2e-36
pfam00237105 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L 1e-31
COG0091120 COG0091, RplV, Ribosomal protein L22 [Translation, 2e-30
PRK00565112 PRK00565, rplV, 50S ribosomal protein L22; Reviewe 5e-10
CHL00034117 CHL00034, rpl22, ribosomal protein L22 8e-06
PRK12279 311 PRK12279, PRK12279, 50S ribosomal protein L22/unkn 5e-05
>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional Back     alignment and domain information 
 Score =  261 bits (668), Expect = 2e-90
 Identities = 109/175 (62%), Positives = 134/175 (76%), Gaps = 1/175 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKY+++P NP+KS KA+GSDLRVHFKNT E A A++ + L +A++YLEDV+A K+ +PF
Sbjct: 1   MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF  GVGRTAQAK    + QGRWP KS KF+L LLKNAE+NAE KGLDV+ L ISH+QV
Sbjct: 61  RRFNGGVGRTAQAKEFG-HTQGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLASRKPRTAT 175
           N+A + RRRTYRAHGRINP+MSSPCHIEL  +EK+E V K  E      K + A 
Sbjct: 120 NRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPKPKEAPKKQTKKQLAR 174

Length = 181
>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Back     alignment and domain information
>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed Back     alignment and domain information
>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e Back     alignment and domain information
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e Back     alignment and domain information
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed Back     alignment and domain information
>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22 Back     alignment and domain information
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 175
PTZ00178181 60S ribosomal protein L17; Provisional 100.0
TIGR01038150 L22_arch ribosomal protein L22(archaeal)/L17(eukar 100.0
PRK04223153 rpl22p 50S ribosomal protein L22P; Reviewed 100.0
COG0091120 RplV Ribosomal protein L22 [Translation, ribosomal 100.0
CHL00034117 rpl22 ribosomal protein L22 100.0
PRK00565112 rplV 50S ribosomal protein L22; Reviewed 100.0
TIGR01044103 rplV_bact ribosomal protein L22, bacterial type. T 100.0
PF00237105 Ribosomal_L22: Ribosomal protein L22p/L17e; InterP 100.0
KOG3353175 consensus 60S ribosomal protein L22 [Translation, 100.0
cd00336105 Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17 100.0
PRK12279 311 50S ribosomal protein L22/unknown domain fusion pr 100.0
KOG1711218 consensus Mitochondrial/chloroplast ribosomal prot 99.91
>PTZ00178 60S ribosomal protein L17; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.6e-58  Score=369.79  Aligned_cols=163  Identities=66%  Similarity=1.045  Sum_probs=157.0

Q ss_pred             CccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCC
Q 030568            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG   80 (175)
Q Consensus         1 ~~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~   80 (175)
                      ||+||++.+|++++++|..+++++||+|+++||++||||++++|+++|++||++|++|||++||+|+||++++.+ ||.+
T Consensus         1 ~~~Ys~~~~n~~~~akA~~~~~riSpkk~r~Va~~IRGk~v~~A~~~L~~Vi~~k~~VPf~r~~~~vgh~~~~~~-~~~~   79 (181)
T PTZ00178          1 MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKE-FGHT   79 (181)
T ss_pred             CCccccCCCCCCceEEEEeCCcccchHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeecCCccccccccc-cccc
Confidence            899999997799999999999999999999999999999999999999999999999999999999999999987 8999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCccCCC
Q 030568           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (175)
Q Consensus        81 ~gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~~~~k  160 (175)
                      +||||+|+|..|+|+|+||++||+++|+|+|+|||.||.||+|++++|++|||+||++++++++|||||+|+|.++.+++
T Consensus        80 ~GR~P~KaA~~i~KlL~SA~aNAe~~gld~d~L~I~~i~v~kG~~lKR~~pRA~GRA~~i~k~t~HI~Ivl~e~~~~~~~  159 (181)
T PTZ00178         80 QGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQVNRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPK  159 (181)
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCcccCCCCCccCCCcCcccCCceeEEEEEEEccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877765


Q ss_pred             Cccc
Q 030568          161 EPET  164 (175)
Q Consensus       161 ~~~~  164 (175)
                      +.+-
T Consensus       160 ~~~~  163 (181)
T PTZ00178        160 PKEA  163 (181)
T ss_pred             chhh
Confidence            4443

>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Back     alignment and domain information
>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed Back     alignment and domain information
>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00034 rpl22 ribosomal protein L22 Back     alignment and domain information
>PRK00565 rplV 50S ribosomal protein L22; Reviewed Back     alignment and domain information
>TIGR01044 rplV_bact ribosomal protein L22, bacterial type Back     alignment and domain information
>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG3353 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e Back     alignment and domain information
>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1711 consensus Mitochondrial/chloroplast ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
3izr_V171 Localization Of The Large Subunit Ribosomal Protein 7e-76
2zkr_r184 Structure Of A Mammalian Ribosomal 60s Subunit With 6e-58
2ww9_I184 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 3e-49
3izs_V170 Localization Of The Large Subunit Ribosomal Protein 3e-49
1s1i_N183 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-48
3jyw_N150 Structure Of The 60s Proteins For Eukaryotic Riboso 6e-48
4a17_Q183 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-43
3zf7_R166 High-resolution Cryo-electron Microscopy Structure 1e-37
3j21_S155 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-17
1s72_R155 Refined Crystal Structure Of The Haloarcula Marismo 4e-17
1ffk_O154 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-17
3g4s_R150 Co-Crystal Structure Of Tiamulin Bound To The Large 4e-17
1yj9_R152 Crystal Structure Of The Mutant 50s Ribosomal Subun 2e-15
>pdb|3IZR|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 171 Back     alignment and structure 
Iteration: 1

 Score =  279 bits (713), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 133/170 (78%), Positives = 145/170 (85%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+E +NPTKS KA G DLRVHFKNTRE A A+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+C GVGRTAQAK+R+ NGQGRWP KSA+FILDLLKNAESNAEVKGLDVD LY+SHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRK 170
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LS           +Q+A+RK
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQIAARK 170
>pdb|2ZKR|RR Chain r, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 184 Back     alignment and structure
>pdb|2WW9|I Chain I, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 184 Back     alignment and structure
>pdb|3IZS|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 170 Back     alignment and structure
>pdb|1S1I|N Chain N, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 183 Back     alignment and structure
>pdb|3JYW|N Chain N, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 150 Back     alignment and structure
>pdb|4A17|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 183 Back     alignment and structure
>pdb|3ZF7|R Chain R, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 166 Back     alignment and structure
>pdb|3J21|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155 Back     alignment and structure
>pdb|1S72|R Chain R, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 155 Back     alignment and structure
>pdb|1FFK|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 154 Back     alignment and structure
>pdb|3G4S|R Chain R, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 150 Back     alignment and structure
>pdb|1YJ9|R Chain R, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 4e-82
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 3e-72
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 2e-70
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 3e-70
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 1e-68
1i4j_A110 50S ribosomal protein L22; mutant, erythromycin re 2e-11
2zjr_P134 50S ribosomal protein L22; ribosome, large ribosom 2e-11
3r8s_S110 50S ribosomal protein L22; protein biosynthesis, R 3e-11
3bbo_U199 Ribosomal protein L22; large ribosomal subunit, sp 7e-11
2ftc_M110 Mitochondrial ribosomal protein L22 isoform A; mit 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V 3jyw_N Length = 184 Back     alignment and structure
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Length = 183 Back     alignment and structure
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 184 Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Length = 155 Back     alignment and structure
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110 Back     alignment and structure
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134 Back     alignment and structure
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110 Back     alignment and structure
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199 Back     alignment and structure
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 100.0
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 100.0
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 100.0
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 100.0
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 100.0
3j21_S155 50S ribosomal protein L22P; archaea, archaeal, KIN 100.0
3r8s_S110 50S ribosomal protein L22; protein biosynthesis, R 100.0
2zjr_P134 50S ribosomal protein L22; ribosome, large ribosom 100.0
2ftc_M110 Mitochondrial ribosomal protein L22 isoform A; mit 100.0
1i4j_A110 50S ribosomal protein L22; mutant, erythromycin re 100.0
3bbo_U199 Ribosomal protein L22; large ribosomal subunit, sp 100.0
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Back     alignment and structure
Probab=100.00  E-value=6.1e-65  Score=411.44  Aligned_cols=172  Identities=53%  Similarity=0.820  Sum_probs=154.9

Q ss_pred             CccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCC
Q 030568            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG   80 (175)
Q Consensus         1 ~~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~   80 (175)
                      |++||++|+||+++++|.++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+||||++|+++ |||.
T Consensus         3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~-~g~~   81 (183)
T 4a17_Q            3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHE-FGRT   81 (183)
T ss_dssp             CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGG-TTCS
T ss_pred             ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhh-cCCc
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999998 8999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCccCCC
Q 030568           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (175)
Q Consensus        81 ~gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~~~~k  160 (175)
                      +||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++|+++++|||||+|+|.+++|||
T Consensus        82 ~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~~v~k  161 (183)
T 4a17_Q           82 QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRK  161 (183)
T ss_dssp             BEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCCC---
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccccCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCCCC
Q 030568          161 EPETQLASRKPRT  173 (175)
Q Consensus       161 ~~~~~~~~~~~~~  173 (175)
                      |+|..-.-.|+++
T Consensus       162 ~~~~~~~~k~~~~  174 (183)
T 4a17_Q          162 EAPKDAAKKVPKT  174 (183)
T ss_dssp             -------------
T ss_pred             chhhhhhcccccc
Confidence            9887665566654
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N Back     alignment and structure
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Back     alignment and structure
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Back     alignment and structure
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Back     alignment and structure
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Back     alignment and structure
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Back     alignment and structure
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 175
d1vqor1150 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon 5e-50
d2gycq1106 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric 3e-14
d2zjrp1127 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ 1e-13
d1i4ja_110 d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat 6e-10
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  156 bits (395), Expect = 5e-50
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60

Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGW---DAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
           +  +Q+ R  RA GR + + S    +EL L E
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELILEE 149
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127 Back     information, alignment and structure
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
d1vqor1150 Ribosomal protein L22 {Archaeon Haloarcula marismo 100.0
d1i4ja_110 Ribosomal protein L22 {Thermus aquaticus, subsp. T 100.0
d2zjrp1127 Ribosomal protein L22 {Deinococcus radiodurans [Ta 100.0
d2gycq1106 Ribosomal protein L22 {Escherichia coli [TaxId: 56 100.0
d1r9pa_134 NifU-like protein HI0377 {Haemophilus influenzae [ 87.78
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3.8e-51  Score=320.52  Aligned_cols=148  Identities=33%  Similarity=0.552  Sum_probs=144.1

Q ss_pred             ccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCC
Q 030568            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ   81 (175)
Q Consensus         2 ~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~   81 (175)
                      ++||++. |++++++|.++++++||||+++||++||||++++|+.||++|+.+|++|||++|+++++|+++.   +||..
T Consensus         2 ~~y~~~~-~~~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~---~~~~~   77 (150)
T d1vqor1           2 ISYSVEA-DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA   77 (150)
T ss_dssp             CCCSSCC-CTTTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSCSB
T ss_pred             CcccccC-CCCceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhh---cCCCc
Confidence            6899985 8999999999999999999999999999999999999999999999999999999999999875   67889


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeee
Q 030568           82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE  153 (175)
Q Consensus        82 gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E  153 (175)
                      |+||+|+|+.|+++|+||.+||+++|+|+|+|||+|+|||+|+++||++|||+||++++++++|||+|+|+|
T Consensus        78 g~~p~kaa~~i~kll~sa~aNA~~~~~d~~~L~I~~~~v~kG~~~KR~~prArGRa~~i~k~~~hi~vvL~E  149 (150)
T d1vqor1          78 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEE  149 (150)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEEC
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCccccCcCcccCCCCCCccCCCceEEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Back     information, alignment and structure
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure