Citrus Sinensis ID: 030600

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MHGSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEccccccEEEccccHHHHccccccccccccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mhgssgclgcfirppvntsasnlskelgvpgrsagkrsisedfwttstcdmdnsavqsqgsisslgtnnlipdtnggsgsasapsefvnhgflLWNQTRQRWIGnkkaenrthqvrepklnthclcLVKKFWLCSWNATYESllgsnkpfpqpiplsEMVDFLVDIWEQEGMYD
Flexible Loop (DISEMBL)
MHGSSGCLGCFIRPPVNtsasnlskelgvpgrsagkrsISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKaenrthqvrepklntHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Low Complexity Region (SEG)
MHGSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Disordered region (IsUnstruct)
******CLGCFIR*************************************************************************FVNHGFLLWNQTRQRWIGNKKA***THQVREPKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWE******
Disordered Region (DISOPRED)
***SSGCLGCFI*******************************WT**T*****************************************HGFLLWNQTRQ************************LCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMY*
Disordered Region (DISEMBL)
MHGSSGCLGCFIRPPVNTSASNLSKE**********RSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTN********PSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Disordered Region (DISPRO)
***SSGCLGCFIRPPVNTSASNLSKELG*PGRSAG***IS*******************************************PSEFVNHGFLLWNQTRQRWIGNK*********REPKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHGSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
351724527	174	uncharacterized protein LOC100499770 [Gl	0.971	0.971	0.670	1e-60
357468217	288	hypothetical protein MTR_4g010330 [Medic	0.959	0.579	0.653	1e-58
351720932	160	uncharacterized protein LOC547651 [Glyci	0.890	0.968	0.629	3e-52
255553169	190	conserved hypothetical protein [Ricinus	0.913	0.836	0.637	4e-52
224059178	160	predicted protein [Populus trichocarpa]	0.919	1.0	0.643	1e-51
356547434	193	PREDICTED: uncharacterized protein LOC10	0.896	0.808	0.618	8e-51
357468213	274	hypothetical protein MTR_4g010330 [Medic	0.879	0.558	0.607	1e-50
351721931	156	uncharacterized protein LOC100500161 [Gl	0.873	0.974	0.627	3e-50
388517837	159	unknown [Lotus japonicus]	0.890	0.974	0.603	6e-50
357468215	156	hypothetical protein MTR_4g010330 [Medic	0.856	0.955	0.604	5e-49

>gi|351724527|ref|NP_001235781.1| uncharacterized protein LOC100499770 [Glycine max] gi|255626433|gb|ACU13561.1| unknown [Glycine max]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/170 (67%), Positives = 132/170 (77%), Gaps = 1/170 (0%)

Query: 6   GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 65
           GC+GC+ RP ++ +    SK L        K S SEDFWTTST DMDNSAVQSQGSISS 
Sbjct: 5   GCVGCYKRPSLSPTVDVPSKGLATQSNVVRKPSSSEDFWTTSTHDMDNSAVQSQGSISSA 64

Query: 66  G-TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHC 124
             TN  +    G S S++ P+EFVNHG +LWNQTRQRW+GNKK EN+T Q++EPKL T+C
Sbjct: 65  SLTNQAVVSHAGSSKSSTNPTEFVNHGVILWNQTRQRWVGNKKPENQTQQLQEPKLRTYC 124

Query: 125 LCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
           LCL K FWLCSWNATYESLLGSNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 125 LCLAKNFWLCSWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468217|ref|XP_003604393.1| hypothetical protein MTR_4g010330 [Medicago truncatula] gi|355505448|gb|AES86590.1| hypothetical protein MTR_4g010330 [Medicago truncatula]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 134/176 (76%), Gaps = 9/176 (5%)

Query: 2   HGSSGCLGCFIRPP---VNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQS 58
           +GSSGC+GC+ RP    V   ++ L+K+    G++  K S SEDFWTTST DMDNSAVQS
Sbjct: 119 YGSSGCVGCYKRPALVTVEVPSTGLTKQ----GKAVDKPSTSEDFWTTSTHDMDNSAVQS 174

Query: 59  QGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREP 118
           QGSISS    N        + S++ PSEFVNHG +LWNQTRQRW+GNKK ENRT Q+REP
Sbjct: 175 QGSISSTSLTN--QAVAAHASSSNNPSEFVNHGLILWNQTRQRWVGNKKPENRTQQLREP 232

Query: 119 KLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
           KL T+  CL K FWLCSWNATYESLL SNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 233 KLRTYFQCLAKFFWLCSWNATYESLLTSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720932|ref|NP_001235913.1| uncharacterized protein LOC547651 [Glycine max] gi|22597160|gb|AAN03467.1| hypothetical protein [Glycine max]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 122/170 (71%), Gaps = 15/170 (8%)

Query: 6   GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 65
           GC+GC+ RP ++ +    SK L   G    K S SEDFWTTST DMDNSAVQSQGSISS 
Sbjct: 5   GCVGCYKRPTLSATVDVPSKGLATQGNGVRKPSSSEDFWTTSTHDMDNSAVQSQGSISSA 64

Query: 66  G-TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHC 124
             TN  +    G S S++ P+EFVNHG +LWNQTRQRW+GNKK ENRT Q+REPKLN   
Sbjct: 65  SLTNQAVVLHAGSSKSSTNPTEFVNHGVILWNQTRQRWVGNKKLENRTQQLREPKLN--- 121

Query: 125 LCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
                      WNATYESLLGSNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 122 -----------WNATYESLLGSNKPFHQPIPLAEMVDFLVDIWEQDGLYD 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553169|ref|XP_002517627.1| conserved hypothetical protein [Ricinus communis] gi|223543259|gb|EEF44791.1| conserved hypothetical protein [Ricinus communis]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 127/174 (72%), Gaps = 15/174 (8%)

Query: 1   MHGSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQG 60
           +  SSGCLG   +P + T     SK   + G++  K SISEDFWTTSTCDMDNSAVQSQG
Sbjct: 32  LQQSSGCLGSCKKPRL-TLIDEQSKGSNIQGQTVKKPSISEDFWTTSTCDMDNSAVQSQG 90

Query: 61  SISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKL 120
           S+SS+ T N   D +G S S SAPS+FVNHG ++WNQTRQRW+G+KK+ NR  Q REPKL
Sbjct: 91  SMSSISTVNQTLDLHGSSSSGSAPSQFVNHGLIVWNQTRQRWVGDKKSLNRARQSREPKL 150

Query: 121 NTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
           N              WNATYESLLGSNKPFP+PIPLSEMVDFLVDIWEQEGMYD
Sbjct: 151 N--------------WNATYESLLGSNKPFPRPIPLSEMVDFLVDIWEQEGMYD 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059178|ref|XP_002299754.1| predicted protein [Populus trichocarpa] gi|118485078|gb|ABK94402.1| unknown [Populus trichocarpa] gi|222847012|gb|EEE84559.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 124/174 (71%), Gaps = 14/174 (8%)

Query: 1   MHGSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQG 60
           MHGSSGCLGC+ +P + TS    SK   V   +  K SISEDFWTTSTCDMD SAVQSQG
Sbjct: 1   MHGSSGCLGCYNKPTLITSVGEQSKGPKVKCETVKKPSISEDFWTTSTCDMDYSAVQSQG 60

Query: 61  SISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKL 120
           SISS+   N   D +GGSGS +  SEFVNHG LLWNQTR  W+GNK++ N     +EPKL
Sbjct: 61  SISSISIANQTLDQHGGSGSINNVSEFVNHGLLLWNQTRHCWVGNKRSGNEEQLPQEPKL 120

Query: 121 NTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
           N              WNATYESLLGSNKPFPQPIPL+EMVDFLVDIWEQEGMYD
Sbjct: 121 N--------------WNATYESLLGSNKPFPQPIPLTEMVDFLVDIWEQEGMYD 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547434|ref|XP_003542117.1| PREDICTED: uncharacterized protein LOC100802439 [Glycine max]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 125/173 (72%), Gaps = 17/173 (9%)

Query: 2   HGSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGS 61
           +GSSGCLG F +PP+  +A    K L   G++A K S SEDFW TST DMDNSAVQSQGS
Sbjct: 38  YGSSGCLGPFKKPPLIATADVPPKGLRKQGKAAKKPSTSEDFWITSTHDMDNSAVQSQGS 97

Query: 62  ISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLN 121
           ISS    N   D +GGS +   P+EFVNHG +LWNQTRQ WIGNK+++N+T Q+REPKL 
Sbjct: 98  ISSASITNQAADPHGGSCN---PTEFVNHGLILWNQTRQAWIGNKRSKNQTEQLREPKL- 153

Query: 122 THCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
                        SWNATYESLLGSNKPFPQ I L+EMV+FLVDIWEQEG+YD
Sbjct: 154 -------------SWNATYESLLGSNKPFPQHISLAEMVEFLVDIWEQEGLYD 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468213|ref|XP_003604391.1| hypothetical protein MTR_4g010330 [Medicago truncatula] gi|355505446|gb|AES86588.1| hypothetical protein MTR_4g010330 [Medicago truncatula]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 125/176 (71%), Gaps = 23/176 (13%)

Query: 2   HGSSGCLGCFIRPP---VNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQS 58
           +GSSGC+GC+ RP    V   ++ L+K+    G++  K S SEDFWTTST DMDNSAVQS
Sbjct: 119 YGSSGCVGCYKRPALVTVEVPSTGLTKQ----GKAVDKPSTSEDFWTTSTHDMDNSAVQS 174

Query: 59  QGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREP 118
           QGSISS    N        + S++ PSEFVNHG +LWNQTRQRW+GNKK ENRT Q+REP
Sbjct: 175 QGSISSTSLTN--QAVAAHASSSNNPSEFVNHGLILWNQTRQRWVGNKKPENRTQQLREP 232

Query: 119 KLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
           KL              SWNATYESLL SNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 233 KL--------------SWNATYESLLTSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721931|ref|NP_001237738.1| uncharacterized protein LOC100500161 [Glycine max] gi|255629494|gb|ACU15093.1| unknown [Glycine max]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 122/169 (72%), Gaps = 17/169 (10%)

Query: 6   GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 65
           GCLG F +PP+  +A    K L   G++A K S SEDFW TST DMDNSAVQSQGSISS 
Sbjct: 5   GCLGPFKKPPLIATADVPPKGLRKQGKAAKKPSTSEDFWITSTHDMDNSAVQSQGSISSA 64

Query: 66  GTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCL 125
              N   D +GGS +   P+EFVNHG +LWNQTRQ WIGNK+++N+T Q+REPKL     
Sbjct: 65  SITNQAADPHGGSCN---PTEFVNHGLILWNQTRQGWIGNKRSKNQTEQLREPKL----- 116

Query: 126 CLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
                    SWNATYESLLGSNKPFPQ IPL+EMVDFLVDIWEQEG+YD
Sbjct: 117 ---------SWNATYESLLGSNKPFPQHIPLAEMVDFLVDIWEQEGLYD 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517837|gb|AFK46980.1| unknown [Lotus japonicus]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 102/169 (60%), Positives = 117/169 (69%), Gaps = 14/169 (8%)

Query: 6   GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 65
           GC+GC+ RP + T+    ++ L   G +  K S SEDFWTTST DMDNSAVQSQGSISS 
Sbjct: 5   GCVGCYKRPTLVTTVDEPTQGLTTQGEAVKKHSTSEDFWTTSTHDMDNSAVQSQGSISSA 64

Query: 66  GTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCL 125
              N     +G S  +S P+EFVN G  LWNQTRQRW+G KK E RT Q+REPKL     
Sbjct: 65  SVTNQAVVPHGVSSKSSNPTEFVNQGLNLWNQTRQRWVGPKKPETRTQQLREPKL----- 119

Query: 126 CLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
                    SWNATYESLLGSNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 120 ---------SWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468215|ref|XP_003604392.1| hypothetical protein MTR_4g010330 [Medicago truncatula] gi|355505447|gb|AES86589.1| hypothetical protein MTR_4g010330 [Medicago truncatula] gi|388496552|gb|AFK36342.1| unknown [Medicago truncatula]

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 121/172 (70%), Gaps = 23/172 (13%)

Query: 6   GCLGCFIRPP---VNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSI 62
           GC+GC+ RP    V   ++ L+K+    G++  K S SEDFWTTST DMDNSAVQSQGSI
Sbjct: 5   GCVGCYKRPALVTVEVPSTGLTKQ----GKAVDKPSTSEDFWTTSTHDMDNSAVQSQGSI 60

Query: 63  SSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNT 122
           SS    N        + S++ PSEFVNHG +LWNQTRQRW+GNKK ENRT Q+REPKL  
Sbjct: 61  SSTSLTNQA--VAAHASSSNNPSEFVNHGLILWNQTRQRWVGNKKPENRTQQLREPKL-- 116

Query: 123 HCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
                       SWNATYESLL SNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 117 ------------SWNATYESLLTSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2093292	162	AT3G15770 "AT3G15770" [Arabido	0.879	0.944	0.483	1.9e-35
TAIR|locus:2037878	154	AT1G15350 "AT1G15350" [Arabido	0.856	0.967	0.502	1.7e-34
TAIR|locus:2145442	169	AT5G25360 "AT5G25360" [Arabido	0.632	0.650	0.495	1.8e-25
TAIR|locus:4515103481	161	AT4G32342 "AT4G32342" [Arabido	0.448	0.484	0.531	5.1e-19
TAIR|locus:2082707	112	AT3G54880 "AT3G54880" [Arabido	0.551	0.857	0.392	6.9e-15
TAIR|locus:2142689	98	AT5G03440 "AT5G03440" [Arabido	0.488	0.867	0.388	1e-13

TAIR|locus:2093292 AT3G15770 "AT3G15770" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 86/178 (48%), Positives = 113/178 (63%)

Query:     3 GSSGCLGCFIRPPVNTSAS---NLSKELGVPG--RSAGKRSI--SEDFWTTSTCDMDNSA 55
             GSS CL CF +    TS     N +K++ V        K S+  SEDFWT +T DM+++A
Sbjct:     2 GSS-CLACFDKSKAKTSVDVPLNGTKDVLVEEDWSELRKPSVVASEDFWTNTTLDMESNA 60

Query:    56 VQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQV 115
                 GS+SS+ T NL  D+ G   S++ P+EFVNHG +LWNQTRQ+W+G+K++E+R    
Sbjct:    61 ---HGSVSSISTTNLTIDSQGCGSSSNEPAEFVNHGLVLWNQTRQQWVGDKRSESRKSVG 117

Query:   116 REPKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMY 173
             REP LN               N TYESLLGSNK FP+PIPL EMV FLV++WE+EG+Y
Sbjct:   118 REPILNE--------------NVTYESLLGSNKRFPRPIPLDEMVQFLVEVWEEEGLY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037878 AT1G15350 "AT1G15350" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 85/169 (50%), Positives = 103/169 (60%)

Query:     9 GCF--IRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSLG 66
             GC    R   +T+AS          R   K S+SEDFW+TST DMDN    SQGS+SS  
Sbjct:     3 GCVGCYREHRSTAASLKDPPSNSIARPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSS-- 60

Query:    67 TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCLC 126
              +N   D+   + +++AP E+VN G LLWNQTR+RW+G  K  N     +  KLN     
Sbjct:    61 -SNQTFDSQSAARNSNAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLN----- 114

Query:   127 LVKKFWLCSWN-ATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
                      WN ATY+SLLGSNK FPQPIPL+EMVDFLVDIWEQEG+YD
Sbjct:   115 ---------WNTATYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGLYD 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2145442 AT5G25360 "AT5G25360" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 58/117 (49%), Positives = 77/117 (65%)

Query:     6 GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 65
             GC GC  +PP+  +    SK L + GR   K S+SEDFW+TSTC+MDNS +QSQ S+SS+
Sbjct:    20 GCFGCCNKPPLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTSTCEMDNSTLQSQRSMSSI 79

Query:    66 G-TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLN 121
               TNN        S S S P+EFVNHG  LWNQTRQ+W+ N  ++ +  +VREP ++
Sbjct:    80 SFTNN-----TSTSASTSNPTEFVNHGLNLWNQTRQQWLANGTSQKKA-KVREPTIS 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103481 AT4G32342 "AT4G32342" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 50/94 (53%), Positives = 61/94 (64%)

Query:    80 SASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCLCLVKKFWLCSWNAT 139
             S S  +EFVNHG +LWN TRQ+W      E  T Q           CLV +  + SWN+T
Sbjct:    83 STSNSTEFVNHGLILWNHTRQQW-----RECLTRQQ----------CLVPEPAI-SWNST 126

Query:   140 YESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMY 173
             Y+SLL +NK FPQPIPL EMV FLVD+WE+EG+Y
Sbjct:   127 YDSLLSTNKLFPQPIPLKEMVHFLVDVWEEEGLY 160

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082707 AT3G54880 "AT3G54880" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 44/112 (39%), Positives = 63/112 (56%)

Query:    64 SLGTNNLIPDTNGGSGSASAPS-EFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNT 122
             +L  + L+ D      + S  +   VNHG  +W + R++W+G+        Q R+ K NT
Sbjct:    16 TLELSKLVKDEKSSVKTNSENTLTLVNHGAKMWQENREKWVGD--------QSRQRK-NT 66

Query:   123 HCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
                    K  + SW+ TYE LL +++PF + IPL EMVDFLVDIW  EG+YD
Sbjct:    67 ------AKDQIISWSTTYEDLLSTHEPFSESIPLPEMVDFLVDIWYDEGLYD 112

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2142689 AT5G03440 "AT5G03440" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 40/103 (38%), Positives = 59/103 (57%)

Query:    74 TNGGSGSASAPSE-FVNHGFLLWNQTRQRWIGNKKAENRTHQVR-EPKLNTHCLCLVKKF 131
             +N  +    +  E FVNH  + W + R++W+G+    NRT ++  EP +           
Sbjct:    12 SNSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPS--NRTSEMPDEPVIG---------- 59

Query:   132 WLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 174
                 +NATYE LL SN PF +PIPL+EMVDFL DIW  +G+++
Sbjct:    60 ----FNATYEDLLTSNTPFNKPIPLAEMVDFLFDIWHGDGLFE 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      174       174   0.00075  109 3  11 22  0.45    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.50u 0.14s 18.64t   Elapsed:  00:00:01
  Total cpu time:  18.50u 0.14s 18.64t   Elapsed:  00:00:01
  Start:  Sat May 11 07:05:38 2013   End:  Sat May 11 07:05:39 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam13259	114	pfam13259, DUF4050, Protein of unknown function (D	2e-47

>gnl|CDD|222012 pfam13259, DUF4050, Protein of unknown function (DUF4050)

 Score =  149 bits (379), Expect = 2e-47
 Identities = 55/133 (41%), Positives = 71/133 (53%), Gaps = 21/133 (15%)

Query: 44  WTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWI 103
           W+TS  D D+S   SQ SISS  ++           S+  P EFVNHG  LW + R  W 
Sbjct: 1   WSTSPYDFDSSDAVSQRSISSQSSD-----RRKRRKSSEEPEEFVNHGLRLWEERRDAWT 55

Query: 104 GNKKAENRTHQVRE--PKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVD 161
           G +K+   ++ +RE  P L              S+NA YE L+G NKP  QPI LS+MV 
Sbjct: 56  GARKSNEESNPIRESIPPL--------------SYNAIYEKLVGQNKPLKQPINLSDMVK 101

Query: 162 FLVDIWEQEGMYD 174
           FLV  WEQEG++ 
Sbjct: 102 FLVAGWEQEGLWP 114

This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 109 and 173 amino acids in length. There are two conserved sequence motifs: IPL and FLVD. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF13259	122	DUF4050: Protein of unknown function (DUF4050)	100.0

>PF13259 DUF4050: Protein of unknown function (DUF4050)

Probab=100.00  E-value=3.1e-39  Score=248.28  Aligned_cols=113  Identities=54%  Similarity=0.943  Sum_probs=96.6

Q ss_pred             cccccccccCcccccccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhcCCCCCc-------cccccC
Q 030600           44 WTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAEN-------RTHQVR  116 (174)
Q Consensus        44 Wsts~~~mdns~~~Sq~siss~s~~n~~~~~~~~~~s~~~~~eFVNhGl~~W~q~R~qWvg~~~~~~-------~~~~~r  116 (174)
                      ||||+++|||+++|+|+++++.   ++..+.+........ ++||||||++|+++|++|||+++...       +...+|
T Consensus         1 ~s~s~~~~d~~~~~~~~~~s~~---~~~~~~~~~~~~~~~-~~~~N~Gl~lW~~rR~~W~~~~~~~~~~~~~l~~~~~~r   76 (122)
T PF13259_consen    1 WSSSPFRFDNSDAQSQRSISST---NSSSDCSKRRKSSEE-EEFVNHGLILWEQRRQQWTGPKKSNKIIEPRLQQSNSIR   76 (122)
T ss_pred             CCCCcccCcChhhhhhhccccc---cchhhhhhhhccccC-ccceeHHHHHHHHHHHHHcCCCCcccccccccccccccc
Confidence            9999999999999999999444   444444433333344 99999999999999999999988774       444577


Q ss_pred             C--CcccchhhhhhhhhhccccchhhhhhcCCCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 030600          117 E--PKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD  174 (174)
Q Consensus       117 e--P~l~~~~~~l~~~~w~~swnaTYe~LLgsnkpFpqPIPL~EMVDfLVDiWE~EGLyd  174 (174)
                      +  |.+              +|++||++||++++||++||||+|||+||||+|++||+||
T Consensus        77 ~~Ip~~--------------~y~~iY~~Lv~~~~pf~~PI~L~dmv~~Lv~gW~~eg~w~  122 (122)
T PF13259_consen   77 ESIPPI--------------SYPAIYEKLVGSNKPFKQPIPLSDMVDFLVDGWEEEGLWP  122 (122)
T ss_pred             cccchh--------------hHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhhcCCccC
Confidence            7  776              9999999999999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00