Citrus Sinensis ID: 030638

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST
cHHHHHHHHcccccEEEEccEEcccccccccccccccEEEEEEcHHHHccccccEEEEEEEcccEEEEEEccccHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccHHHHHHEEEEEEEEEEccccccccccccccc
cHHHHHHHHcccccEEEEccccccccccccccccccccEEEEEHHHHHccccccEEEEHccccEEEEEEcccccHHHHHHHHHHHHHHccEEEEcccHHHHHHHHHccccccEEcEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccc
MLEHMNKLlkvpgskllfggeelknhsipsiygalkptavfvpleeilkdgnyelvtreifgpfQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGntvngttyaglrarttgapqnhwfgpsgdprgagigtpeAIKLVWSSHREIiydygpvpgnweippst
MLEHMNKllkvpgskLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYdygpvpgnweippst
MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST
*************SKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGP*****GAGIGTPEAIKLVWSSHREIIYDYGPVPGNW******
***HMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFG*********IGTPEAIKLVWSSHREIIYDYGPVPG********
MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST
MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWE*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query174 2.2.26 [Sep-21-2011]
Q8VZC3556 Delta-1-pyrroline-5-carbo yes no 1.0 0.312 0.868 3e-88
Q40255551 Probable aldehyde dehydro N/A no 1.0 0.315 0.850 2e-85
>sp|Q8VZC3|AL121_ARATH Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial OS=Arabidopsis thaliana GN=ALDH12A1 PE=2 SV=1 Back     alignment and function desciption
 Score =  323 bits (828), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 152/175 (86%), Positives = 165/175 (94%), Gaps = 1/175 (0%)

Query: 1   MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGN-YELVTRE 59
           MLEHM  LL++PGSKLLFGG+ELKNHSIPSIYGAL+PTAV+VP+EEILKD   YELVT+E
Sbjct: 382 MLEHMENLLQIPGSKLLFGGKELKNHSIPSIYGALEPTAVYVPIEEILKDNKTYELVTKE 441

Query: 60  IFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRA 119
           IFGPFQIVTEYK+DQLPLVL ALERMHAHLTAAVVSNDP+FLQEVIGN+VNGTTYAGLR 
Sbjct: 442 IFGPFQIVTEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRG 501

Query: 120 RTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST 174
           RTTGAPQNHWFGP+GDPRGAGIGTPEAIKLVWS HRE+IYDYGPVP  WE+PPST
Sbjct: 502 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELPPST 556
Plays a role in the inhibition of programmed cell death by converting the toxic proline catabolism intermediate (s)-1-pyrroline-5-carboxylate (P5C) to glutamate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 2
>sp|Q40255|ALDH_LINUS Probable aldehyde dehydrogenase OS=Linum usitatissimum GN=FIS1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query174
149938952 554 P5CDH1 [Actinidia chinensis] 1.0 0.314 0.873 6e-88
15383744 556 delta-1-pyrroline-5-carboxylate dehydrog 1.0 0.312 0.868 9e-87
218963693 554 delta-1-pyrroline-5-carboxylate dehydrog 1.0 0.314 0.873 1e-86
10178084 556 dehydrogenase [Arabidopsis thaliana] 1.0 0.312 0.868 1e-86
18424599 556 delta-1-pyrroline-5-carboxylate dehydrog 1.0 0.312 0.868 1e-86
297797225 556 ALDH12A1 [Arabidopsis lyrata subsp. lyra 1.0 0.312 0.862 2e-86
218963691 554 delta-1-pyrroline-5-carboxylate dehydrog 1.0 0.314 0.867 4e-86
255540941 584 1-pyrroline-5-carboxylate dehydrogenase, 1.0 0.297 0.850 5e-86
312283149 557 unnamed protein product [Thellungiella h 1.0 0.312 0.857 1e-85
225456697 555 PREDICTED: delta-1-pyrroline-5-carboxyla 1.0 0.313 0.844 5e-85
>gi|149938952|gb|ABR45721.1| P5CDH1 [Actinidia chinensis] Back     alignment and taxonomy information
 Score =  328 bits (840), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 152/174 (87%), Positives = 164/174 (94%)

Query: 1   MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREI 60
           MLEHMNKLL++ GSKLLFGGE LKNHSIPSIYGA+KPTA+FVPLEE+LKD NYELVTREI
Sbjct: 381 MLEHMNKLLQISGSKLLFGGEALKNHSIPSIYGAIKPTAIFVPLEELLKDNNYELVTREI 440

Query: 61  FGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRAR 120
           FGPFQI+TEYK  QLP+VL+ALERMHAHLTAA+VSNDPLFLQEVIG +VNGTTYAGLRAR
Sbjct: 441 FGPFQIITEYKDHQLPMVLDALERMHAHLTAAIVSNDPLFLQEVIGKSVNGTTYAGLRAR 500

Query: 121 TTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST 174
           TTGAPQNHWFGP+GDPRGAGIGTPEAIKLVWS HREIIYD+GPVP NWE P ST
Sbjct: 501 TTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDFGPVPQNWETPAST 554

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15383744|gb|AAK73756.1| delta-1-pyrroline-5-carboxylate dehydrogenase precursor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218963693|gb|ACL13550.1| delta-1-pyrroline-5-carboxylate dehydrogenase 1 protein [Malus x domestica] Back     alignment and taxonomy information
>gi|10178084|dbj|BAB11503.1| dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18424599|ref|NP_568955.1| delta-1-pyrroline-5-carboxylate dehydrogenase 12A1 [Arabidopsis thaliana] gi|75248520|sp|Q8VZC3.1|AL121_ARATH RecName: Full=Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial; Short=AtP5CDH; Short=P5C dehydrogenase; AltName: Full=Aldehyde dehydrogenase family 12 member A1; Flags: Precursor gi|17473533|gb|AAL38248.1| dehydrogenase [Arabidopsis thaliana] gi|23397209|gb|AAN31887.1| putative dehydrogenase [Arabidopsis thaliana] gi|34098903|gb|AAQ56834.1| At5g62530 [Arabidopsis thaliana] gi|332010236|gb|AED97619.1| delta-1-pyrroline-5-carboxylate dehydrogenase 12A1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297797225|ref|XP_002866497.1| ALDH12A1 [Arabidopsis lyrata subsp. lyrata] gi|297312332|gb|EFH42756.1| ALDH12A1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218963691|gb|ACL13549.1| delta-1-pyrroline-5-carboxylate dehydrogenase protein [Malus x domestica] Back     alignment and taxonomy information
>gi|255540941|ref|XP_002511535.1| 1-pyrroline-5-carboxylate dehydrogenase, putative [Ricinus communis] gi|223550650|gb|EEF52137.1| 1-pyrroline-5-carboxylate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|312283149|dbj|BAJ34440.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|225456697|ref|XP_002273569.1| PREDICTED: delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query174
TAIR|locus:2154094556 ALDH12A1 "AT5G62530" [Arabidop 1.0 0.312 0.868 2.2e-82
TAIR|locus:2154094 ALDH12A1 "AT5G62530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 152/175 (86%), Positives = 165/175 (94%)

Query:     1 MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGN-YELVTRE 59
             MLEHM  LL++PGSKLLFGG+ELKNHSIPSIYGAL+PTAV+VP+EEILKD   YELVT+E
Sbjct:   382 MLEHMENLLQIPGSKLLFGGKELKNHSIPSIYGALEPTAVYVPIEEILKDNKTYELVTKE 441

Query:    60 IFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRA 119
             IFGPFQIVTEYK+DQLPLVL ALERMHAHLTAAVVSNDP+FLQEVIGN+VNGTTYAGLR 
Sbjct:   442 IFGPFQIVTEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRG 501

Query:   120 RTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST 174
             RTTGAPQNHWFGP+GDPRGAGIGTPEAIKLVWS HRE+IYDYGPVP  WE+PPST
Sbjct:   502 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELPPST 556


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.138   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      174       174   0.00075  109 3  11 22  0.45    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.21u 0.09s 17.30t   Elapsed:  00:00:01
  Total cpu time:  17.21u 0.09s 17.30t   Elapsed:  00:00:01
  Start:  Sat May 11 08:37:34 2013   End:  Sat May 11 08:37:35 2013
GO:0004028 "3-chloroallyl aldehyde dehydrogenase activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003842 "1-pyrroline-5-carboxylate dehydrogenase activity" evidence=IGI;IMP
GO:0006560 "proline metabolic process" evidence=TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0010133 "proline catabolic process to glutamate" evidence=IMP
GO:0009651 "response to salt stress" evidence=IEP
GO:0072593 "reactive oxygen species metabolic process" evidence=IMP
GO:0008270 "zinc ion binding" evidence=IDA
GO:0050897 "cobalt ion binding" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VZC3AL121_ARATH1, ., 5, ., 1, ., 1, 20.86851.00.3129yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query174
cd07126489 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carb 1e-109
cd07084442 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+ 9e-56
cd07078432 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrog 2e-14
cd06534367 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehyd 3e-10
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12 Back     alignment and domain information 
 Score =  320 bits (821), Expect = e-109
 Identities = 128/162 (79%), Positives = 146/162 (90%)

Query: 1   MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREI 60
           +L+H++KLL +PG+K+LFGG+ L NHSIPSIYGA +PTAVFVPLEEI  + N+ELVT E+
Sbjct: 328 ILDHVDKLLAIPGAKVLFGGKPLTNHSIPSIYGAYEPTAVFVPLEEIAIEENFELVTTEV 387

Query: 61  FGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRAR 120
           FGPFQ+VTEYK +QLPLVL ALERMHAHLTAAVVSND  FLQEV+ NTVNGTTYAG+RAR
Sbjct: 388 FGPFQVVTEYKDEQLPLVLEALERMHAHLTAAVVSNDIRFLQEVLANTVNGTTYAGIRAR 447

Query: 121 TTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYG 162
           TTGAPQNHWFGP+GDPRGAGIGTPEAI+LVWS HREII D G
Sbjct: 448 TTGAPQNHWFGPAGDPRGAGIGTPEAIRLVWSCHREIITDIG 489

Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences. Length = 489
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like Back     alignment and domain information
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family Back     alignment and domain information
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 174
KOG2450501 consensus Aldehyde dehydrogenase [Energy productio 100.0
cd07126489 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate de 100.0
PLN02174484 aldehyde dehydrogenase family 3 member H1 99.97
PRK11241482 gabD succinate-semialdehyde dehydrogenase I; Provi 99.96
TIGR01236533 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehy 99.96
PLN02467503 betaine aldehyde dehydrogenase 99.96
cd07140486 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydroge 99.96
COG1012472 PutA NAD-dependent aldehyde dehydrogenases [Energy 99.96
PLN02766501 coniferyl-aldehyde dehydrogenase 99.96
PLN02419604 methylmalonate-semialdehyde dehydrogenase [acylati 99.96
PTZ00381493 aldehyde dehydrogenase family protein; Provisional 99.96
PLN02466538 aldehyde dehydrogenase family 2 member 99.96
PRK10090409 aldehyde dehydrogenase A; Provisional 99.96
TIGR01780448 SSADH succinate-semialdehyde dehydrogenase. SSADH 99.95
PLN02203484 aldehyde dehydrogenase 99.95
TIGR03216481 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehy 99.95
KOG2455561 consensus Delta-1-pyrroline-5-carboxylate dehydrog 99.95
cd07559480 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dep 99.95
TIGR03374472 ABALDH 1-pyrroline dehydrogenase. Members of this 99.95
cd07117475 ALDH_StaphAldA1 Uncharacterized Staphylococcus aur 99.95
cd07116479 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependen 99.95
cd07123522 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate 99.95
PRK13252488 betaine aldehyde dehydrogenase; Provisional 99.95
cd07113477 ALDH_PADH_NahF Escherichia coli NAD+-dependent phe 99.95
cd07107456 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde 99.95
PLN02278498 succinic semialdehyde dehydrogenase 99.95
PRK09406457 gabD1 succinic semialdehyde dehydrogenase; Reviewe 99.95
cd07136449 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydr 99.95
PRK13968462 putative succinate semialdehyde dehydrogenase; Pro 99.95
PRK09457487 astD succinylglutamic semialdehyde dehydrogenase; 99.95
cd07142476 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 99.95
KOG2451503 consensus Aldehyde dehydrogenase [Energy productio 99.95
cd07094453 ALDH_F21_LactADH-like ALDH subfamily: NAD+-depende 99.95
cd07141481 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydro 99.95
PLN02315508 aldehyde dehydrogenase family 7 member 99.95
TIGR03250472 PhnAcAld_DH putative phosphonoacetaldehyde dehydro 99.95
cd07148455 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with si 99.95
cd07130474 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic se 99.95
cd07090457 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobuty 99.95
TIGR02299488 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyd 99.95
cd07137432 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 m 99.95
PRK13473475 gamma-aminobutyraldehyde dehydrogenase; Provisiona 99.95
cd07085478 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrog 99.95
cd07101454 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succi 99.95
cd07119482 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent be 99.94
PRK09847494 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen 99.94
cd07147452 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1 99.94
cd07133434 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-l 99.94
cd07089459 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric 99.94
TIGR03240484 arg_catab_astD succinylglutamic semialdehyde dehyd 99.94
cd07151465 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyd 99.94
cd07099453 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-di 99.94
cd07086478 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadip 99.94
PLN00412496 NADP-dependent glyceraldehyde-3-phosphate dehydrog 99.94
cd07100429 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succi 99.94
cd07108457 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent a 99.94
cd07132443 ALDH_F3AB Aldehyde dehydrogenase family 3 members 99.94
cd07134433 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydro 99.94
cd07144484 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyd 99.94
cd07131478 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuen 99.94
cd07124512 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxyl 99.94
cd07106446 ALDH_AldA-AAD23400 Streptomyces aureofaciens putat 99.94
cd07143481 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde deh 99.94
cd07091476 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 99.94
cd07088468 ALDH_LactADH-AldA Escherichia coli lactaldehyde de 99.94
PRK09407524 gabD2 succinic semialdehyde dehydrogenase; Reviewe 99.94
cd07152443 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogen 99.94
cd07145456 ALDH_LactADH_F420-Bios Methanocaldococcus jannasch 99.94
cd07097473 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent 99.94
TIGR01804467 BADH glycine betaine aldehyde dehydrogenase. Betai 99.94
cd07102452 ALDH_EDX86601 Uncharacterized aldehyde dehydrogena 99.94
TIGR02278 663 PaaN-DH phenylacetic acid degradation protein paaN 99.94
cd07082473 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylat 99.94
cd07098465 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 99.94
cd07120455 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde deh 99.94
cd07105432 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-l 99.94
cd07150451 ALDH_VaniDH_like Pseudomonas putida vanillin dehyd 99.94
TIGR01722477 MMSDH methylmalonic acid semialdehyde dehydrogenas 99.94
cd07112462 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent 99.94
cd07092450 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent g 99.94
cd07118454 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydr 99.94
cd07115453 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxy 99.94
cd07146451 ALDH_PhpJ Streptomyces putative phosphonoformaldeh 99.94
PF00171462 Aldedh: Aldehyde dehydrogenase family; InterPro: I 99.94
cd07149453 ALDH_y4uC Uncharacterized ALDH (y4uC) with similar 99.94
TIGR01237511 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehy 99.94
cd07109454 ALDH_AAS00426 Uncharacterized Saccharopolyspora sp 99.94
cd07139471 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehy 99.93
cd07110456 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydro 99.93
cd07114457 ALDH_DhaS Uncharacterized Candidatus pelagibacter 99.93
cd07083500 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)- 99.93
PRK11903521 aldehyde dehydrogenase; Provisional 99.93
cd07104431 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependen 99.93
cd07128513 ALDH_MaoC-N N-terminal domain of the monoamine oxi 99.93
PRK03137514 1-pyrroline-5-carboxylate dehydrogenase; Provision 99.93
cd07135436 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde 99.93
cd07138466 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric ac 99.93
cd07111480 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. 99.93
cd07095431 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde 99.93
cd07103451 ALDH_F5_SSADH_GabD Mitochondrial succinate-semiald 99.93
PRK11563 675 bifunctional aldehyde dehydrogenase/enoyl-CoA hydr 99.92
cd07093455 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 99.92
cd07087426 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl 99.92
PRK119041038 bifunctional proline dehydrogenase/pyrroline-5-car 99.92
cd07125518 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate d 99.92
cd07129454 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydr 99.91
cd07084442 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent 99.91
KOG2454583 consensus Betaine aldehyde dehydrogenase [Energy p 99.91
KOG2452881 consensus Formyltetrahydrofolate dehydrogenase [Nu 99.9
TIGR01238500 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehy 99.9
KOG2456477 consensus Aldehyde dehydrogenase [Energy productio 99.9
PRK11905 1208 bifunctional proline dehydrogenase/pyrroline-5-car 99.89
cd07078432 ALDH NAD(P)+ dependent aldehyde dehydrogenase fami 99.89
PLN02418718 delta-1-pyrroline-5-carboxylate synthase 99.88
cd07079406 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate redu 99.88
PRK00197417 proA gamma-glutamyl phosphate reductase; Provision 99.88
PRK11809 1318 putA trifunctional transcriptional regulator/proli 99.86
TIGR01092715 P5CS delta l-pyrroline-5-carboxylate synthetase. T 99.86
cd07121429 ALDH_EutE Ethanolamine utilization protein EutE-li 99.85
PRK15398465 aldehyde dehydrogenase EutE; Provisional 99.77
cd06534367 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase s 99.77
cd07077397 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase 99.77
cd07127549 ALDH_PAD-PaaZ Phenylacetic acid degradation protei 99.76
TIGR02288551 PaaN_2 phenylacetic acid degradation protein paaN. 99.76
cd07081439 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldeh 99.74
KOG2453507 consensus Aldehyde dehydrogenase [Energy productio 99.7
PRK13805 862 bifunctional acetaldehyde-CoA/alcohol dehydrogenas 99.66
COG4230 769 Delta 1-pyrroline-5-carboxylate dehydrogenase [Ene 99.62
TIGR02518488 EutH_ACDH acetaldehyde dehydrogenase (acetylating) 99.61
TIGR00407398 proA gamma-glutamyl phosphate reductase. The prosi 99.59
cd07122436 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydr 99.53
KOG2449157 consensus Methylmalonate semialdehyde dehydrogenas 99.09
COG0014417 ProA Gamma-glutamyl phosphate reductase [Amino aci 90.63
PF07368215 DUF1487: Protein of unknown function (DUF1487); In 90.55
KOG4165433 consensus Gamma-glutamyl phosphate reductase [Amin 83.54
>KOG2450 consensus Aldehyde dehydrogenase [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-34  Score=252.89  Aligned_cols=142  Identities=23%  Similarity=0.291  Sum_probs=126.0

Q ss_pred             HHHHHHHHcCCCcEEEeCCcccCCCCCCCCcceeeeEEEEccchhhccCCCccccceeeeccceeEEEecCCCHHHHHHH
Q 030638            2 LEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNA   81 (174)
Q Consensus         2 ~~~v~~~~~~~g~~il~GG~~~~~~~~~~~~g~i~PTv~~~~~~~~~~~~~~~il~EEiFGPv~~I~~y~d~~~eEai~~   81 (174)
                      ++++++.++ +|+++++||.+..+     +++||+||||. ++.     ++|+|++|||||||++|++|++.  ||+|++
T Consensus       355 ~~yi~~~k~-eGa~l~~gG~~~g~-----~Gyfi~Ptv~~-~v~-----~~m~i~~EEIFGPVv~v~~F~t~--eE~i~~  420 (501)
T KOG2450|consen  355 LGYIESGKK-EGATLLCGGVRLGD-----KGYFIKPTVFT-NVT-----DDMRIAKEEIFGPVVVVLKFKTE--EEVIER  420 (501)
T ss_pred             HHHHHHHHh-cCCEEEecCcccCC-----CceEECCeecc-CCC-----hhhhhhHhhccCceEEEEecCcH--HHHHHH
Confidence            567777777 79999999977432     23489999885 322     56999999999999999999966  999999


Q ss_pred             HhcCCCCceEEEecCCHHHHHHHHHHcccceeeeccCCcccCCCCCCCCCCCCCCCCCcCCCh--hHHhhhceeceEEEE
Q 030638           82 LERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTP--EAIKLVWSSHREIIY  159 (174)
Q Consensus        82 an~~~~gLta~Vft~d~~~~~~v~~~~~~G~v~~n~~~~~~~~~~~~~f~p~gg~k~SGvG~~--~~~~~~~~~~k~v~~  159 (174)
                      ||+++|||+|+|||+|.++++++++++++|+||+|  |+....++.    ||||+|+||+|||  .+.++.|+++|+|.+
T Consensus       421 AN~t~yGLAa~V~t~dl~~a~~va~~l~aGtVwiN--~y~~~~~~~----PfgG~K~SG~GRE~g~~~l~~ytevKtv~v  494 (501)
T KOG2450|consen  421 ANNTTYGLAAGVFTKDLDKAHRVANALQAGTVWIN--CYNVFDAQV----PFGGFKMSGIGRELGEYGLEAYTEVKTVTV  494 (501)
T ss_pred             hcCCcccceeeEeccChHHHHHHHHHhcCceEEEe--ccccccccC----CccccccccCCccccHHHHhhcceeeEEEE
Confidence            99999999999999999999999999999999988  777777664    9999999999999  889999999999999


Q ss_pred             ccCC
Q 030638          160 DYGP  163 (174)
Q Consensus       160 ~~~~  163 (174)
                      ++..
T Consensus       495 ~~~~  498 (501)
T KOG2450|consen  495 KLPQ  498 (501)
T ss_pred             eCCC
Confidence            9987

>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12 Back     alignment and domain information
>PLN02174 aldehyde dehydrogenase family 3 member H1 Back     alignment and domain information
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional Back     alignment and domain information
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 Back     alignment and domain information
>PLN02467 betaine aldehyde dehydrogenase Back     alignment and domain information
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L Back     alignment and domain information
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02766 coniferyl-aldehyde dehydrogenase Back     alignment and domain information
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating] Back     alignment and domain information
>PTZ00381 aldehyde dehydrogenase family protein; Provisional Back     alignment and domain information
>PLN02466 aldehyde dehydrogenase family 2 member Back     alignment and domain information
>PRK10090 aldehyde dehydrogenase A; Provisional Back     alignment and domain information
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase Back     alignment and domain information
>PLN02203 aldehyde dehydrogenase Back     alignment and domain information
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase Back     alignment and domain information
>KOG2455 consensus Delta-1-pyrroline-5-carboxylate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like Back     alignment and domain information
>TIGR03374 ABALDH 1-pyrroline dehydrogenase Back     alignment and domain information
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like Back     alignment and domain information
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like Back     alignment and domain information
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17 Back     alignment and domain information
>PRK13252 betaine aldehyde dehydrogenase; Provisional Back     alignment and domain information
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like Back     alignment and domain information
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like Back     alignment and domain information
>PLN02278 succinic semialdehyde dehydrogenase Back     alignment and domain information
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed Back     alignment and domain information
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like Back     alignment and domain information
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional Back     alignment and domain information
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed Back     alignment and domain information
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like Back     alignment and domain information
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion] Back     alignment and domain information
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins Back     alignment and domain information
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like Back     alignment and domain information
>PLN02315 aldehyde dehydrogenase family 7 member Back     alignment and domain information
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase Back     alignment and domain information
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1 Back     alignment and domain information
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B Back     alignment and domain information
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1 Back     alignment and domain information
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase Back     alignment and domain information
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins Back     alignment and domain information
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional Back     alignment and domain information
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2 Back     alignment and domain information
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like Back     alignment and domain information
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like Back     alignment and domain information
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional Back     alignment and domain information
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like Back     alignment and domain information
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like Back     alignment and domain information
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins Back     alignment and domain information
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase Back     alignment and domain information
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like Back     alignment and domain information
>cd07099 ALDH_DDALDH Methylomonas sp Back     alignment and domain information
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins Back     alignment and domain information
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like Back     alignment and domain information
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like Back     alignment and domain information
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins Back     alignment and domain information
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like Back     alignment and domain information
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like Back     alignment and domain information
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like Back     alignment and domain information
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA Back     alignment and domain information
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like Back     alignment and domain information
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like Back     alignment and domain information
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins Back     alignment and domain information
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like Back     alignment and domain information
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed Back     alignment and domain information
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like Back     alignment and domain information
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like Back     alignment and domain information
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like Back     alignment and domain information
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase Back     alignment and domain information
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp Back     alignment and domain information
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN Back     alignment and domain information
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11 Back     alignment and domain information
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like Back     alignment and domain information
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like Back     alignment and domain information
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like Back     alignment and domain information
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like Back     alignment and domain information
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase Back     alignment and domain information
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like Back     alignment and domain information
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like Back     alignment and domain information
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like Back     alignment and domain information
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like Back     alignment and domain information
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like Back     alignment and domain information
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1 Back     alignment and domain information
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1 Back     alignment and domain information
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative Back     alignment and domain information
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like Back     alignment and domain information
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like Back     alignment and domain information
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like Back     alignment and domain information
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like Back     alignment and domain information
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like Back     alignment and domain information
>PRK11903 aldehyde dehydrogenase; Provisional Back     alignment and domain information
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins Back     alignment and domain information
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase Back     alignment and domain information
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional Back     alignment and domain information
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins Back     alignment and domain information
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like Back     alignment and domain information
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like Back     alignment and domain information
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like Back     alignment and domain information
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like Back     alignment and domain information
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like Back     alignment and domain information
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins Back     alignment and domain information
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed Back     alignment and domain information
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA Back     alignment and domain information
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase Back     alignment and domain information
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like Back     alignment and domain information
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion] Back     alignment and domain information
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) Back     alignment and domain information
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed Back     alignment and domain information
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family Back     alignment and domain information
>PLN02418 delta-1-pyrroline-5-carboxylate synthase Back     alignment and domain information
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19 Back     alignment and domain information
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional Back     alignment and domain information
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase Back     alignment and domain information
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like Back     alignment and domain information
>PRK15398 aldehyde dehydrogenase EutE; Provisional Back     alignment and domain information
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily Back     alignment and domain information
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family Back     alignment and domain information
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like Back     alignment and domain information
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN Back     alignment and domain information
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins Back     alignment and domain information
>KOG2453 consensus Aldehyde dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional Back     alignment and domain information
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating) Back     alignment and domain information
>TIGR00407 proA gamma-glutamyl phosphate reductase Back     alignment and domain information
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like Back     alignment and domain information
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism] Back     alignment and domain information
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster Back     alignment and domain information
>KOG4165 consensus Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 174
d1a4sa_503 c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), 1e-04
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]} Length = 503 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Baltic cod (Gadus callarias) [TaxId: 8053]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 21/158 (13%)

Query: 13  GSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQ 72
           G+++L GGE L         G      V     +     +   V  EIFGP   V  +  
Sbjct: 359 GARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRD-----DMTCVKEEIFGPVMSVLPFDT 413

Query: 73  DQLPLVLNALERMHAH---LTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHW 129
           ++       L+R +     L + V + D      V  N   GT Y  +   +    +  +
Sbjct: 414 EE-----EVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCY--INTYSISPVEVPF 466

Query: 130 --FGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVP 165
             +  SG  R  G      +   +S  + +I + G V 
Sbjct: 467 GGYKMSGFGRENG---QATVD-YYSQLKTVIVEMGDVD 500

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query174
d1a4sa_503 Aldehyde reductase (dehydrogenase), ALDH {Baltic c 100.0
d1bxsa_494 Aldehyde reductase (dehydrogenase), ALDH {Sheep (O 100.0
d1o04a_494 Aldehyde reductase (dehydrogenase), ALDH {Human (H 100.0
d1wnda_474 Putative betaine aldehyde dehydrogenase YdcW {Esch 100.0
d1uzba_516 1-pyrroline-5-carboxylate dehydrogenase {Thermus t 100.0
d1ky8a_499 Non-phosphorylating glyceraldehyde-3-phosphate deh 100.0
d1ad3a_446 Aldehyde reductase (dehydrogenase), ALDH {Rat (Rat 100.0
d1euha_474 Aldehyde reductase (dehydrogenase), ALDH {Streptoc 99.97
d1ez0a_504 Aldehyde reductase (dehydrogenase), ALDH {Vibrio h 99.95
d1o20a_414 Gamma-glutamyl phosphate reductase {Thermotoga mar 99.89
d1vlua_436 Gamma-glutamyl phosphate reductase {Baker's yeast 99.51
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Baltic cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=6.7e-38  Score=202.79  Aligned_cols=147  Identities=23%  Similarity=0.278  Sum_probs=121.0

Q ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEECCCHHHCCCCCCCCCCEEEECCCEEEEEECCCCHHHHHH
Q ss_conf             88899877499969993774367888887-75324417997153011037876553101230424699941899778999
Q 030638            2 LEHMNKLLKVPGSKLLFGGEELKNHSIPS-IYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLN   80 (174)
Q Consensus         2 ~~~i~~~~~~~g~~il~GG~~~~~~~~~~-~~g~i~PTii~v~~~~~~~~~~~~il~EEiFGPv~~I~~y~~~~~dE~i~   80 (174)
                      +++++++.+ +|+++++||.......... .++|++|||+....      +++++++||+||||++|++|+|  .||+++
T Consensus       349 ~~~~~~a~~-~Ga~v~~gg~~~~~~~~~~~~G~~~~Ptvl~~~~------~~~~~~~~E~FgPvl~v~~~~~--~~eai~  419 (503)
T d1a4sa_         349 LGFVAQAKK-EGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCR------DDMTCVKEEIFGPVMSVLPFDT--EEEVLQ  419 (503)
T ss_dssp             HHHHHHHHH-HTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCC------TTSHHHHSCCCSSEEEEEEECC--HHHHHH
T ss_pred             HHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCEEECCEEEECCC------CCCHHHHCCCCCCEEEEEECCC--HHHHHH
T ss_conf             999999997-6999997883067788666785277088995799------9878885544576479997199--999999


Q ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHCEECEEEE
Q ss_conf             9863999826999449988999999773355366366873357887877799889999847976--67854001013999
Q 030638           81 ALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTP--EAIKLVWSSHREII  158 (174)
Q Consensus        81 ~an~~~~gLta~Vft~d~~~~~~v~~~~~~G~v~~n~~~~~~~~~~~~~f~p~gg~k~SG~G~~--~~~~~~~~~~k~v~  158 (174)
                      ++|+++|||+++|||+|.+++.++++++++|.+|+|  +..+.++.    .||||+|.||.||+  ..+++.|++.|+|.
T Consensus       420 ~an~~~~gL~~~i~t~d~~~~~~~~~~l~~G~v~iN--~~~~~~~~----~PfGG~k~SG~G~~~g~~~l~~~t~~k~v~  493 (503)
T d1a4sa_         420 RANNTTFGLASGVFTRDISRAHRVAANLEAGTCYIN--TYSISPVE----VPFGGYKMSGFGRENGQATVDYYSQLKTVI  493 (503)
T ss_dssp             HHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEES--CCCCCCTT----SCBCCSGGGEECCBSTTGGGGGSEEEEEEE
T ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHHHCCEEEEEEE--CCCCCCCC----CCCCCCCCCCCCCCHHHHHHHHHHCEEEEE
T ss_conf             986799998699991899999999986886279991--89888889----884670417078412899999960808999


Q ss_pred             ECCCC
Q ss_conf             83588
Q 030638          159 YDYGP  163 (174)
Q Consensus       159 ~~~~~  163 (174)
                      +++++
T Consensus       494 ~~~~~  498 (503)
T d1a4sa_         494 VEMGD  498 (503)
T ss_dssp             ECCSC
T ss_pred             ECCCC
T ss_conf             95777
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]} Back     information, alignment and structure
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]} Back     information, alignment and structure
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure