Citrus Sinensis ID: 030653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MFYSLKHDPQPRNKTSLLKTKIFLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccHHHHHHcccccccHHHHHccccccccEEccccEEEcccEEEEEccccEEEEcccccccHHHHHHHHccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEccccccHccccccccEEEEcccccccHHHHHccccEEEEccccccccccccccccccEcccccEEEEEccccccccEccccccEEEEEccHHHHHHHHHHccccHHHHHHHHccccccEcccccccccEEEEEccHHHHHEcccccccHHHHHHHHHHcccHHHEEEcc
Coil and Loop (DISEMBL)
mfyslkhdpqprnktsllktkiflsnSLAFHSQIRTKSQMaevrhhrpiphtlptrrlllpsvlsssstchsllpsvvsSSLLIRTLSMWVAVLGSKFVKLISAgyvgeqevtsatllpdgwmrtgdlcyedsfLFIVDGLKDLVkykgcqvapAELEHLLlshpemvdaavip
Flexible Loop (DISEMBL)
mfyslkhdpqprnktsllkTKIFLSNSLAFHSQIRTKSQMAEVRHhrpiphtlptrRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKYKGCQVAPAELEhlllshpemvdaavip
Low Complexity Region (SEG)
MFYSLKHDPQPRNKTSLLKTKIFLSNSLAFHSQIRTKSQMAEVrhhrpiphtlptrrlllpsvlsssstchsllpsvvsssllIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP
Disordered region (IsUnstruct)
*****************LKTKIFLSNSLAFHS*******************TLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSH**********
Disordered Region (DISOPRED)
MFYS***DPQPRNKTSLLKTKIFLSNSLAFH*QIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP
Disordered Region (DISEMBL)
*********QPRNKTSLLKTKIFLSNSLAFHSQI***********HRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP
Disordered Region (DISPRO)
MFYSLKHDPQPRNKTSLLKTKIFLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFYSLKHDPQPRNKTSLLKTKIFLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q8RU95	598	4-coumarate--CoA ligase-l	yes	no	0.425	0.123	0.618	2e-24
Q84P21	546	4-coumarate--CoA ligase-l	yes	no	0.419	0.133	0.666	8e-24
Q7F1X5	542	4-coumarate--CoA ligase-l	yes	no	0.413	0.132	0.662	2e-23
Q10S72	552	4-coumarate--CoA ligase-l	no	no	0.655	0.206	0.467	3e-23
P0C5B6	550	4-coumarate--CoA ligase-l	no	no	0.419	0.132	0.626	3e-22
Q3E6Y4	552	4-coumarate--CoA ligase-l	no	no	0.419	0.132	0.613	1e-21
Q84P25	565	4-coumarate--CoA ligase-l	no	no	0.402	0.123	0.597	9e-20
Q84P23	562	4-coumarate--CoA ligase-l	no	no	0.425	0.131	0.539	6e-19
Q84P26	550	4-coumarate--CoA ligase-l	no	no	0.396	0.125	0.592	6e-19
Q69RG7	558	4-coumarate--CoA ligase-l	no	no	0.402	0.125	0.583	8e-19

>sp|Q8RU95|4CLL6_ORYSJ 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 2/76 (2%)

Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           ++  GYVG+ E T+AT+ PDGW++TGDLCY  ED +L++VD LK+L+KYKG QV PAELE
Sbjct: 449 VVMKGYVGDPEATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPPAELE 508

Query: 159 HLLLSHPEMVDAAVIP 174
           H+L S PE+ DAAV+P
Sbjct: 509 HILQSRPEIADAAVVP 524

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  109 bits (273), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 60/75 (80%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I  GY   +E TS+TL  +GW+RTGDLCY  ED F+F+VD LK+L+KYKG QVAPAELE 
Sbjct: 399 IMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEA 458

Query: 160 LLLSHPEMVDAAVIP 174
           LLL+HPE+ DAAVIP
Sbjct: 459 LLLTHPEITDAAVIP 473

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q7F1X5|4CLL5_ORYSJ 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 60/74 (81%), Gaps = 2/74 (2%)

Query: 103 SAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHL 160
           S GYVG+ E T+AT+  +GW++TGDLCY  ED FL+IVD LK+L+KYKG QV PAELEH+
Sbjct: 394 STGYVGDDEATAATVDSEGWLKTGDLCYFNEDGFLYIVDRLKELIKYKGYQVPPAELEHI 453

Query: 161 LLSHPEMVDAAVIP 174
           L SHP + DAAVIP
Sbjct: 454 LQSHPGIADAAVIP 467

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 76/122 (62%), Gaps = 8/122 (6%)

Query: 55  TRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTS 114
           +RR     +LS ++    + P    +  + RT  +W+   G   +K    GY    E T 
Sbjct: 366 SRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIR--GPYVMK----GYFKNAEATQ 419

Query: 115 ATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAV 172
           +TL PDGW++TGDLCY  ED +LF+VD LK+L+KYKG QV PAELE LLL+HPE+ D AV
Sbjct: 420 STLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEALLLTHPEVTDVAV 479

Query: 173 IP 174
           IP
Sbjct: 480 IP 481

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           IS GY   QE T+ T+  +GW++TGDLCY  ED FLF+VD LK+L+KYKG QV PAELE 
Sbjct: 405 ISKGYFKNQEATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEA 464

Query: 160 LLLSHPEMVDAAVIP 174
           LL++HP+++DAAVIP
Sbjct: 465 LLITHPDILDAAVIP 479

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q3E6Y4|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           IS GY G +E T+ T+  +GW++ GDLCY  ED FLF+VD LK+L+KYKG QV PAELE 
Sbjct: 407 ISKGYFGNEEATNETINLEGWLKLGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEA 466

Query: 160 LLLSHPEMVDAAVIP 174
           LL++HP ++DAAVIP
Sbjct: 467 LLIAHPHILDAAVIP 481

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 56/72 (77%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY   +E T++T+  +GW++TGDLCY   D F+F+VD LK+L+K  G QVAPAELE LLL
Sbjct: 423 GYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLL 482

Query: 163 SHPEMVDAAVIP 174
           +HPE+ DAAVIP
Sbjct: 483 AHPEIADAAVIP 494

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 2/76 (2%)

Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELE 158
           +I  GYVG ++ ++ T+  +GW++TGDLCY DS  FL+IVD LK+L+KYK  QV P ELE
Sbjct: 412 VIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELE 471

Query: 159 HLLLSHPEMVDAAVIP 174
            +L S+P+++DAAV+P
Sbjct: 472 QILHSNPDVIDAAVVP 487

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 7/76 (9%)

Query: 102 ISAGYV-GEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           I+ GY   E+E+ ++    +GW++TGDLCY   D FLFIVD LK+L+KYKG QV PAELE
Sbjct: 408 IAKGYFRNEEEIITS----EGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELE 463

Query: 159 HLLLSHPEMVDAAVIP 174
            LLL+HP+++DAAVIP
Sbjct: 464 ALLLNHPDILDAAVIP 479

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q69RG7|4CLL7_ORYSJ 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GYVG+ E  + T   +GW++TGDLCY  +D FLF+VD LK+L+KYK  QV PAELE +L 
Sbjct: 412 GYVGDNEANATTFNSEGWLKTGDLCYIDQDGFLFVVDRLKELIKYKAYQVPPAELELVLH 471

Query: 163 SHPEMVDAAVIP 174
           S P++VDAAV+P
Sbjct: 472 SLPQIVDAAVMP 483

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
296090249	565	unnamed protein product [Vitis vinifera]	0.419	0.129	0.733	9e-25
225452163	541	PREDICTED: 4-coumarate--CoA ligase-like	0.419	0.134	0.733	1e-24
224133070	548	4-coumarate-coa ligase [Populus trichoca	0.459	0.145	0.659	6e-24
255536983	540	AMP dependent CoA ligase, putative [Rici	0.419	0.135	0.72	1e-23
125573000	579	hypothetical protein OsJ_04438 [Oryza sa	0.442	0.132	0.594	6e-23
20161028	579	putative 4-coumarate:CoA ligase [Oryza s	0.442	0.132	0.594	6e-23
225452165	543	PREDICTED: 4-coumarate--CoA ligase-like	0.402	0.128	0.708	8e-23
296090250	513	unnamed protein product [Vitis vinifera]	0.402	0.136	0.708	8e-23
224099965	112	predicted protein [Populus trichocarpa]	0.465	0.723	0.651	8e-23
209572802	598	RecName: Full=4-coumarate--CoA ligase-li	0.425	0.123	0.618	1e-22

>gi|296090249|emb|CBI40068.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 62/75 (82%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I  GYV + + TS TL PDGW+RTGDLCY  ED FLFIVD LK+L+KYKG QVAPAELEH
Sbjct: 416 IMKGYVNDPKATSETLTPDGWLRTGDLCYIDEDGFLFIVDRLKELIKYKGYQVAPAELEH 475

Query: 160 LLLSHPEMVDAAVIP 174
           LL SHP++VDAAVIP
Sbjct: 476 LLQSHPQIVDAAVIP 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452163|ref|XP_002270555.1| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Vitis vinifera]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 62/75 (82%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I  GYV + + TS TL PDGW+RTGDLCY  ED FLFIVD LK+L+KYKG QVAPAELEH
Sbjct: 392 IMKGYVNDPKATSETLTPDGWLRTGDLCYIDEDGFLFIVDRLKELIKYKGYQVAPAELEH 451

Query: 160 LLLSHPEMVDAAVIP 174
           LL SHP++VDAAVIP
Sbjct: 452 LLQSHPQIVDAAVIP 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133070|ref|XP_002327954.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224133074|ref|XP_002327955.1| acyl:coa ligase [Populus trichocarpa] gi|222837363|gb|EEE75742.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222837364|gb|EEE75743.1| acyl:coa ligase [Populus trichocarpa]

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 67/88 (76%), Gaps = 8/88 (9%)

Query: 89  MWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVK 146
           +WV   GS  +K    GYVG+ E TS TL PDGW+RTGDLCY  E+ FLF+VD LK+L+K
Sbjct: 395 LWVR--GSTIMK----GYVGDPEATSTTLDPDGWLRTGDLCYIDEEGFLFVVDRLKELIK 448

Query: 147 YKGCQVAPAELEHLLLSHPEMVDAAVIP 174
           YKG QVAPAELE LL SHPE+ DAAVIP
Sbjct: 449 YKGYQVAPAELEQLLHSHPEIADAAVIP 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536983|ref|XP_002509558.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223549457|gb|EEF50945.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 61/75 (81%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I  GYVG+ E TSA L  DGW+RTGDLCY  E+ F+FIVD LK+L+KYKG QVAPAELE 
Sbjct: 391 IMKGYVGDPEATSAALTSDGWLRTGDLCYIDEEGFVFIVDRLKELIKYKGYQVAPAELEQ 450

Query: 160 LLLSHPEMVDAAVIP 174
           LLLSHPE+ DAAVIP
Sbjct: 451 LLLSHPEIADAAVIP 465

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125573000|gb|EAZ14515.1| hypothetical protein OsJ_04438 [Oryza sativa Japonica Group]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 64/79 (81%), Gaps = 2/79 (2%)

Query: 98  FVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPA 155
           ++ +  +GYVG+ E T+AT+ PDGW++TGDLCY  ED +L++VD LK+L+KYKG QV PA
Sbjct: 427 YMGIFFSGYVGDPEATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPPA 486

Query: 156 ELEHLLLSHPEMVDAAVIP 174
           ELEH+L S PE+ DAAV+P
Sbjct: 487 ELEHILQSRPEIADAAVVP 505

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20161028|dbj|BAB89961.1| putative 4-coumarate:CoA ligase [Oryza sativa Japonica Group] gi|20161608|dbj|BAB90528.1| putative 4-coumarate-CoA ligase [Oryza sativa Japonica Group] gi|56784513|dbj|BAD82770.1| putative 4-coumarate:CoA ligase [Oryza sativa Japonica Group]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 64/79 (81%), Gaps = 2/79 (2%)

Query: 98  FVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPA 155
           ++ +  +GYVG+ E T+AT+ PDGW++TGDLCY  ED +L++VD LK+L+KYKG QV PA
Sbjct: 427 YMGIFFSGYVGDPEATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPPA 486

Query: 156 ELEHLLLSHPEMVDAAVIP 174
           ELEH+L S PE+ DAAV+P
Sbjct: 487 ELEHILQSRPEIADAAVVP 505

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452165|ref|XP_002270592.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [Vitis vinifera]

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 61/72 (84%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GYVG+++ T  TL+ DGW+RTGDLCY D   FL++VD LK+L+KYKG QVAPAELEHLL 
Sbjct: 397 GYVGDRKATRETLVSDGWLRTGDLCYIDGEGFLYVVDRLKELIKYKGYQVAPAELEHLLQ 456

Query: 163 SHPEMVDAAVIP 174
           SHPE+VDAAVIP
Sbjct: 457 SHPEIVDAAVIP 468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090250|emb|CBI40069.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 61/72 (84%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GYVG+++ T  TL+ DGW+RTGDLCY D   FL++VD LK+L+KYKG QVAPAELEHLL 
Sbjct: 367 GYVGDRKATRETLVSDGWLRTGDLCYIDGEGFLYVVDRLKELIKYKGYQVAPAELEHLLQ 426

Query: 163 SHPEMVDAAVIP 174
           SHPE+VDAAVIP
Sbjct: 427 SHPEIVDAAVIP 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099965|ref|XP_002334423.1| predicted protein [Populus trichocarpa] gi|222870385|gb|EEF07516.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 67/89 (75%), Gaps = 8/89 (8%)

Query: 88  SMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLV 145
            +WV   GS  +K    GYVG+ E TS TL PDGW+RTGDLCY  E+ FLF+VD LK+L+
Sbjct: 30  ELWVR--GSTIMK----GYVGDPEATSTTLDPDGWLRTGDLCYIDEEGFLFVVDRLKELI 83

Query: 146 KYKGCQVAPAELEHLLLSHPEMVDAAVIP 174
           KYKG QVAPAELE LL SHPE+ DAAVIP
Sbjct: 84  KYKGYQVAPAELEQLLHSHPEIADAAVIP 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209572802|sp|Q8RU95.2|4CLL6_ORYSJ RecName: Full=4-coumarate--CoA ligase-like 6

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 2/76 (2%)

Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           ++  GYVG+ E T+AT+ PDGW++TGDLCY  ED +L++VD LK+L+KYKG QV PAELE
Sbjct: 449 VVMKGYVGDPEATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPPAELE 508

Query: 159 HLLLSHPEMVDAAVIP 174
           H+L S PE+ DAAV+P
Sbjct: 509 HILQSRPEIADAAVVP 524

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.419	0.133	0.666	9.3e-22
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.419	0.132	0.626	1.9e-20
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.419	0.129	0.573	5e-18
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.425	0.131	0.539	1.3e-17
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.396	0.125	0.592	1.6e-17
UNIPROTKB|Q5LVA1	535	fadD "4-coumarate:CoA ligase"	0.413	0.134	0.540	1.5e-16
TIGR_CMR|SPO_0801	535	SPO_0801 "4-coumarate:CoA liga	0.413	0.134	0.540	1.5e-16
WB|WBGene00008669	544	acs-14 [Caenorhabditis elegans	0.408	0.130	0.594	2.5e-16
UNIPROTKB|P08659	550	P08659 "Luciferin 4-monooxygen	0.413	0.130	0.554	3.3e-16
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.408	0.125	0.493	5.7e-16

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 9.3e-22, P = 9.3e-22
 Identities = 50/75 (66%), Positives = 60/75 (80%)

Query:   102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
             I  GY   +E TS+TL  +GW+RTGDLCY  ED F+F+VD LK+L+KYKG QVAPAELE 
Sbjct:   399 IMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEA 458

Query:   160 LLLSHPEMVDAAVIP 174
             LLL+HPE+ DAAVIP
Sbjct:   459 LLLTHPEITDAAVIP 473

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 47/75 (62%), Positives = 60/75 (80%)

Query:   102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
             IS GY   QE T+ T+  +GW++TGDLCY  ED FLF+VD LK+L+KYKG QV PAELE 
Sbjct:   405 ISKGYFKNQEATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEA 464

Query:   160 LLLSHPEMVDAAVIP 174
             LL++HP+++DAAVIP
Sbjct:   465 LLITHPDILDAAVIP 479

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 43/75 (57%), Positives = 57/75 (76%)

Query:   102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
             +  GY   +E T++T+  +GW++TGDLCY   D F+F+VD LK+L+K  G QVAPAELE 
Sbjct:   420 VMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEA 479

Query:   160 LLLSHPEMVDAAVIP 174
             LLL+HPE+ DAAVIP
Sbjct:   480 LLLAHPEIADAAVIP 494

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 41/76 (53%), Positives = 59/76 (77%)

Query:   101 LISAGYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELE 158
             +I  GYVG ++ ++ T+  +GW++TGDLCY DS  FL+IVD LK+L+KYK  QV P ELE
Sbjct:   412 VIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELE 471

Query:   159 HLLLSHPEMVDAAVIP 174
              +L S+P+++DAAV+P
Sbjct:   472 QILHSNPDVIDAAVVP 487

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query:   102 ISAGYV-GEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
             I+ GY   E+E+ ++    +GW++TGDLCY   D FLFIVD LK+L+KYKG QV PAELE
Sbjct:   408 IAKGYFRNEEEIITS----EGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELE 463

Query:   159 HLLLSHPEMVDAAVIP 174
              LLL+HP+++DAAVIP
Sbjct:   464 ALLLNHPDILDAAVIP 479

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

UNIPROTKB|Q5LVA1 fadD "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query:   102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
             +  GY+  +  T AT++  GW+RTGD+ +  ED FL+I D LK+L+KYKG QVAPAE+E 
Sbjct:   389 VMKGYLNNEAATRATIVEGGWLRTGDIAHFDEDGFLYITDRLKELIKYKGFQVAPAEVEA 448

Query:   160 LLLSHPEMVDAAVI 173
              LL+HP + DAAVI
Sbjct:   449 ALLTHPAIADAAVI 462

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TIGR_CMR|SPO_0801 SPO_0801 "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query:   102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
             +  GY+  +  T AT++  GW+RTGD+ +  ED FL+I D LK+L+KYKG QVAPAE+E 
Sbjct:   389 VMKGYLNNEAATRATIVEGGWLRTGDIAHFDEDGFLYITDRLKELIKYKGFQVAPAEVEA 448

Query:   160 LLLSHPEMVDAAVI 173
              LL+HP + DAAVI
Sbjct:   449 ALLTHPAIADAAVI 462

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

WB|WBGene00008669 acs-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 211 (79.3 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 44/74 (59%), Positives = 55/74 (74%)

Query:   102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
             I  GY+G  E T++T++ DGW+ TGD+ Y  ED  LFIVD LK+L+K KG QV PAELE 
Sbjct:   400 IMLGYLGRPEATASTVI-DGWLHTGDIGYLNEDGNLFIVDRLKELIKVKGLQVPPAELED 458

Query:   160 LLLSHPEMVDAAVI 173
             LLLSHP++ D AVI
Sbjct:   459 LLLSHPKIRDCAVI 472

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|P08659 P08659 "Luciferin 4-monooxygenase" [Photinus pyralis (taxid:7054)]

 Score = 210 (79.0 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 41/74 (55%), Positives = 51/74 (68%)

Query:   101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
             +I +GYV   E T+A +  DGW+ +GD+ Y  ED   FIVD LK L+KYKG QVAPAELE
Sbjct:   396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 455

Query:   159 HLLLSHPEMVDAAV 172
              +LL HP + DA V
Sbjct:   456 SILLQHPNIFDAGV 469

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 5.7e-16, P = 5.7e-16
 Identities = 36/73 (49%), Positives = 55/73 (75%)

Query:   102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
             +  GY+   + T  +++ D W+RTGD+ Y  ED +LFIVD +K+++KYKG Q+APA+LE 
Sbjct:   417 VMKGYLNNPKATQMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEA 476

Query:   160 LLLSHPEMVDAAV 172
             +L+SHP ++DAAV
Sbjct:   477 VLVSHPLIIDAAV 489

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020554001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (427 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-33
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-27
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-25
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	8e-22
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	9e-21
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-18
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-18
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-16
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-16
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-16
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	8e-16
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-15
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-15
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-14
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-14
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	6e-14
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	9e-14
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-13
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-13
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-13
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-13
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	9e-13
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-12
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-11
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-11
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-11
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	6e-11
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	9e-11
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-10
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-10
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	3e-10
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	3e-10
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-10
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-10
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-10
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	9e-10
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-09
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-09
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	5e-09
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	6e-09
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-09
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	9e-09
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-08
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-08
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-08
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-08
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-08
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-08
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	5e-08
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-08
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	6e-08
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	6e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-08
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	7e-08
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	8e-08
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	8e-08
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-07
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-07
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-07
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	3e-07
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-07
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-07
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	6e-07
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	6e-07
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	9e-07
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-06
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-06
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-06
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-06
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-06
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-06
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	6e-06
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	1e-05
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	1e-05
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-05
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-05
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-05
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-05
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-05
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	3e-05
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	4e-05
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	4e-05
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	4e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	6e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	6e-05
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	8e-05
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-04
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-04
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	1e-04
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-04
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-04
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	3e-04
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	4e-04
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	5e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	5e-04
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	6e-04
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-04
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	0.001
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	0.001
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	0.001
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.001
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	0.002
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	0.002
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.002
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	0.003
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	0.004
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	0.004
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.004

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  123 bits (312), Expect = 1e-33
 Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           +  GY+   E T+ T+  DGW+ TGDL Y  ED +LFIVD LK+L+KYKG QVAPAELE 
Sbjct: 367 VMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEA 426

Query: 160 LLLSHPEMVDAAVIP 174
           LLLSHPE+ DAAVIP
Sbjct: 427 LLLSHPEIADAAVIP 441

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  105 bits (265), Expect = 3e-27
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEH 159
           I  GY+   E T  T+  DGW+ TGD+ Y D     +IVD  K+L+KYKG QV PAELE 
Sbjct: 353 IMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEA 412

Query: 160 LLLSHPEMVDAAVI 173
           +LL HP++ DAAVI
Sbjct: 413 VLLEHPKVADAAVI 426

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  101 bits (253), Expect = 2e-25
 Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I  GY+ + E T+ T+  DGW+ TGD+ Y  +D  LFIVD LK+L+KYKG QVAPAELE 
Sbjct: 393 IMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEA 452

Query: 160 LLLSHPEMVDAAVIP 174
           LL+SHP + DAAV+P
Sbjct: 453 LLISHPSIADAAVVP 467

Length = 537

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 91.1 bits (226), Expect = 8e-22
 Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           +  GY+   + T +T+  DGW+RTGD+ Y  ED +L+IVD LK+++KYKG Q+APA+LE 
Sbjct: 411 VMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEA 470

Query: 160 LLLSHPEMVDAAVIP 174
           +L+SHPE++DAAV  
Sbjct: 471 VLISHPEIIDAAVTA 485

Length = 560

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 87.7 bits (217), Expect = 9e-21
 Identities = 40/72 (55%), Positives = 53/72 (73%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY   +E T  T+  DGW+ TGD+ Y  +D  +FIVD +K+L+KYKG QVAPAELE +LL
Sbjct: 401 GYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL 460

Query: 163 SHPEMVDAAVIP 174
           +HP + DAAV+P
Sbjct: 461 THPSVEDAAVVP 472

Length = 546

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 80.6 bits (200), Expect = 1e-18
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY  + E T+  +  DGW+ TGDL Y  ED +L IV  +KD++   G  + PAE+E  LL
Sbjct: 212 GYYNDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALL 271

Query: 163 SHPEMVDAAVI 173
           +HP + +AAV+
Sbjct: 272 THPAVAEAAVV 282

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 80.6 bits (200), Expect = 3e-18
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           +  GY    E T A  +  GW+ TGD+ Y  ED +L+I D +KD++   G  + P ELE 
Sbjct: 377 LMQGYWNRPEAT-AETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELED 435

Query: 160 LLLSHPEMVDAAVI 173
            L  HP + + AVI
Sbjct: 436 ALYGHPAVAEVAVI 449

Length = 521

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY      T+A    DGW RTGDL Y  E+ +L+I    KDL+K  G  V PAE+E +LL
Sbjct: 208 GYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLL 267

Query: 163 SHPEMVDAAVI 173
            HP + +AAV+
Sbjct: 268 QHPAVAEAAVV 278

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 75.6 bits (186), Expect = 2e-16
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           +  GY    E T+     DGW+RTGDL Y  ED +L+IV  LKDL+   G  + P E+E 
Sbjct: 382 VMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEA 441

Query: 160 LLLSHPEMVDAAVIP 174
           +L  HP + +AAV+ 
Sbjct: 442 VLAEHPAVAEAAVVG 456

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 75.2 bits (186), Expect = 2e-16
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY    E T+  L  DGW+RTGD+ Y  ED + +IVD  KD++   G  V P E+E +L
Sbjct: 333 KGYWNRPEETAEVL-TDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVL 391

Query: 162 LSHPEMVDAAVI 173
            SHP +++AAV+
Sbjct: 392 YSHPAVLEAAVV 403

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 73.5 bits (181), Expect = 8e-16
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 105 GYVGEQEVTSATLLPDGWM--RTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHL 160
           GY+ + E+T+   + DGW   RTGDL    ED +L I+    D VK +G ++ P E+E +
Sbjct: 341 GYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAV 400

Query: 161 LLSHPEMVDAAV 172
           LL HP + +AAV
Sbjct: 401 LLEHPGVAEAAV 412

Length = 412

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY  + E T+A +  DGW+ TGDL    E+ +L+IVD  KD+    G  V PAE+E +L 
Sbjct: 376 GYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLY 435

Query: 163 SHPEMVDAAVI 173
            HP + +AAVI
Sbjct: 436 EHPAVAEAAVI 446

Length = 513

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
           AGY    E T+  L  DGW+ TGDL Y  ED +L+IVD  KD++   G  + PAE+E++L
Sbjct: 207 AGYWNRPEATAEALR-DGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVL 265

Query: 162 LSHPEMVDAAVI 173
           L+HP + D AVI
Sbjct: 266 LAHPAVADVAVI 277

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 105 GYVGEQEVTSATLLP---DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           GY    E T+ + +      + RTGDL Y  E+ + F +D +K ++   G +V PAE+E 
Sbjct: 291 GYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEA 350

Query: 160 LLLSHPEMVDAAVI 173
           LL  HP +++  VI
Sbjct: 351 LLYQHPAVLEVCVI 364

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           ++AGY+   E        DGW RTGDL Y  ED +LF+   +K+L+   G +++P E+E 
Sbjct: 207 VTAGYLNNPEANREAF-RDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEE 265

Query: 160 LLLSHPEMVDAAVI 173
           +LL HP + +A V 
Sbjct: 266 VLLRHPAVAEAVVF 279

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY    E  +     DG+ RTGDL     D +  +V  +KD +   G +++P E+E+LL
Sbjct: 347 RGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLL 406

Query: 162 LSHPEMVDAAVIP 174
           LSHP + DAAV+ 
Sbjct: 407 LSHPAVADAAVVG 419

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 67.6 bits (166), Expect = 9e-14
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+   + T A    DGW RTGDL     D +L I    KD++   G  ++  E+E LLL
Sbjct: 301 GYLDPPDNTEAFT-DDGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLL 359

Query: 163 SHPEMVDAAVIP 174
            HP + + AV+ 
Sbjct: 360 RHPAVAEVAVVA 371

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 100 KLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAEL 157
           K I   Y  + + T+  L  DGW+ TGD  Y  E+ F + VD   +++K  G  V+  EL
Sbjct: 377 KTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVEL 436

Query: 158 EHLLLSHPEMVDAAVI 173
           E+++ +HP++ D  V+
Sbjct: 437 ENIIATHPKIQDIVVV 452

Length = 517

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY    E T+ + L DGW RTGD+    ED F+ IVD +K+L+   G  V PAE+E +L
Sbjct: 429 KGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVL 487

Query: 162 LSHPEMVDAAVI 173
             HP + DAAV+
Sbjct: 488 REHPGVEDAAVV 499

Length = 573

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELE 158
           L+  GY    E T+     DGW+ TGD+  ED   F +IVD  KD++   G  V P E+E
Sbjct: 374 LVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVE 432

Query: 159 HLLLSHPEMVDAAVI 173
            +L  HP +   AVI
Sbjct: 433 DVLAEHPAVAQVAVI 447

Length = 524

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 13/95 (13%)

Query: 82  LLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVD 139
           L++R    W           +  GY G  E T+     +GW  TGD     ED FL+ VD
Sbjct: 274 LVVRPRRPWA----------MFKGYYGMPEATAKAW-RNGWFHTGDRGRRDEDGFLYFVD 322

Query: 140 GLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP 174
             KD ++ +G  ++  E+E  +L+HP + +AAV+ 
Sbjct: 323 RKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVA 357

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 64.9 bits (159), Expect = 9e-13
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKY-KGCQVAPAELEHL 160
            GY    E T+  L  DGW+ TGD+    ED FL I D  KDL+    G  +AP  +E+ 
Sbjct: 294 KGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENA 353

Query: 161 LLSHPEMVDAAVI 173
           L + P +  A V+
Sbjct: 354 LKASPYISQAVVV 366

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           ++  Y  + E  +  L  DGW RTGD+    ED ++ I D  KD++K  G  ++  ELE+
Sbjct: 379 VTGSYYKDPE-KTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELEN 437

Query: 160 LLLSHPEMVDAAVI 173
            L++HP + +AAV+
Sbjct: 438 ALMAHPAVAEAAVV 451

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           ++ GY+  ++ T  T   DGW +TGD+ Y  E+ FL+++D   DL+   G  + PAE+E 
Sbjct: 342 VTKGYLNREDATRETFQ-DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEE 400

Query: 160 LLLSHPEMVDAAVI 173
           +LLSHP + +A V+
Sbjct: 401 VLLSHPGVAEAGVV 414

Length = 483

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           +S GY    + T+     DGW RTGD      D F ++VD  KD+    G  V PAE+E 
Sbjct: 342 LSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEA 401

Query: 160 LLLSHPEMVDAAVI 173
           +L  HP + + AV+
Sbjct: 402 VLADHPGIRECAVV 415

Length = 488

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    E T   L  DGW++TGD  L  ED ++ IVD  KD++   G  V P ELE +L 
Sbjct: 417 GYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLA 476

Query: 163 SHPEMVDAAVI 173
           + P ++  A I
Sbjct: 477 ALPGVLQCAAI 487

Length = 562

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 101 LISAGYVGEQEVT-----SATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVA 153
            +  GY  + E T        L  +  + TGDL    E+ +L+ V    D++K +G +V+
Sbjct: 206 NVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVS 265

Query: 154 PAELEHLLLSHPEMVDAAVI 173
           P E+E ++ +HP + +AAVI
Sbjct: 266 PTEIEEVICAHPLVAEAAVI 285

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 106 YVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLS 163
           Y  + E T+A   P GW+  GD+ Y  ED +L++ D   D++   G  + P E+E+LL++
Sbjct: 354 YHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVT 413

Query: 164 HPEMVDAAVI 173
           HP++ D AV 
Sbjct: 414 HPKVADVAVF 423

Length = 502

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKY-KGCQVAPAELEHLL 161
           GY    E T+     DGW RTGDL    ED +L I    K+L+K   G  +AP  +E  L
Sbjct: 433 GYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL 492

Query: 162 LSHPEMVDAAVI 173
              P +    V+
Sbjct: 493 AKSPLIEQICVV 504

Length = 613

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKY-KGCQVAPAELEHLL 161
           GY  + E T+     DGW+ TGD     ED FL I   +K+L K  KG  VAPA +E+LL
Sbjct: 355 GYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLL 414

Query: 162 LSHPEMVDAAVI 173
            ++P  V+   +
Sbjct: 415 SANP-HVEQVCV 425

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY---EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
           GY+   + T+  L  DG+ RTGDL Y   +  F++    + D ++  G  V PAE+EH L
Sbjct: 390 GYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVY-QTRMGDSLRLGGFLVNPAEIEHAL 448

Query: 162 LSHPEMVDAAVI 173
            + P +  A V+
Sbjct: 449 EALPGVAAAQVV 460

Length = 540

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    E T   ++ DGW+ TGD+    E+ FL IVD  KD++   G  V P E+E +++
Sbjct: 417 GYWQRPEAT-DEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVM 475

Query: 163 SHPEMVDAAVI 173
            HP++++ A +
Sbjct: 476 LHPKVLEVAAV 486

Length = 560

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLK--DLVKYKGCQVAPAELEHL 160
           GY+   + T+A    DGW RTGD+     D    IV G +  DL+K  G ++   E+E  
Sbjct: 334 GYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIV-GRESTDLIKSGGYRIGAGEIETA 392

Query: 161 LLSHPEMVDAAVI 173
           LL HP + +AAV+
Sbjct: 393 LLGHPGVREAAVV 405

Length = 471

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDL-CY-EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY  + E T+  L  DGW+ TGD+    E  FL  +   K+++K  G  V P+E+E LL 
Sbjct: 427 GYWNKPEATAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLG 485

Query: 163 SHPEMVDAAVIP 174
            HP ++ +AV+ 
Sbjct: 486 QHPAVLGSAVVG 497

Length = 567

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY  + E T+  L  +GW +TGD+     D F+ IVD  KDL+   G  V P E+E +++
Sbjct: 425 GYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVM 484

Query: 163 SHPEMVDAAVI 173
           +HP++ + A I
Sbjct: 485 AHPKVANCAAI 495

Length = 562

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP 174
             W RTGD     ED + ++     D++K  G ++ P E+E +LL+HP + +AAV+ 
Sbjct: 395 GRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVG 451

Length = 528

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 56.1 bits (136), Expect = 9e-10
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLV-KYKGCQVAPAELEHL 160
           + Y  + E T+     DGW +TGD+    ED +  I+    D + K  G +V+  E+E  
Sbjct: 297 SEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEA 356

Query: 161 LLSHPEMVDAAVI 173
           LL HP + + AVI
Sbjct: 357 LLEHPGVAEVAVI 369

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
            +  GY    E T+ ++  DGWM TGDL    E  ++ IV   KD++   G  + P E+E
Sbjct: 408 SVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIE 467

Query: 159 HLLLSHPEMVDAAVI 173
             L +HP + D  V 
Sbjct: 468 EFLFTHPAVADVQVF 482

Length = 558

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY  + E T+  +  DGWM TGDL    E+ ++ IV  +KD++   G  + P E+E  L 
Sbjct: 411 GYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLY 470

Query: 163 SHPEMVDAAVI 173
           +HP++ D  V+
Sbjct: 471 THPKIQDVQVV 481

Length = 559

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           ++ GY  + E T+       W R+GD+ Y  E+ FL++ D  KD++   G  +A +E+E 
Sbjct: 355 VTKGYWKDPEKTAEAFY-GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVER 413

Query: 160 LLLSHPEMVDAAVI 173
           ++   PE+ +AAVI
Sbjct: 414 VIYELPEVAEAAVI 427

Length = 497

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY+ + E T AT+    W  TGD     ED + + V    D++K  G ++ P E+E  L
Sbjct: 291 RGYLKDPEKTEATIR-GDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESAL 349

Query: 162 LSHPEMVDAAVIP 174
           + HP + +AAV+ 
Sbjct: 350 IEHPAVAEAAVVG 362

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 53.3 bits (129), Expect = 7e-09
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY+ +  +T      DGW  TGDL Y   + +L+++    DL+   G  + P E+E +L
Sbjct: 272 LGYLPQGGLTPPLD-EDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVL 330

Query: 162 LSHPEMVDAAVIP 174
           L HP + +AAV+ 
Sbjct: 331 LQHPAVEEAAVVG 343

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.5 bits (128), Expect = 9e-09
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I  GY  + E T+A +L DGW+ TGD+ Y  ED F ++ D  KD++   G  V P E+E 
Sbjct: 413 IMKGYWNKPEETAA-VLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEE 471

Query: 160 LLLSHPEMVDAAVI 173
           +L  H ++ +   I
Sbjct: 472 VLYEHEKVQEVVTI 485

Length = 563

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY  + E T+      GW  +GDL    E+ ++ +VD  KD++K  G  VA  E+E  L 
Sbjct: 380 GYWDDPEKTAEAFR-GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALY 438

Query: 163 SHPEMVDAAVI 173
           +HP + + AVI
Sbjct: 439 THPAVAEVAVI 449

Length = 523

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           +  GY+ +    +   L DGW+ TGDL     D +L++    KDL+   G  + P  +E 
Sbjct: 216 VFPGYLNDAHN-AGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEE 274

Query: 160 LLLSHPEMVDAAVIP 174
            LL HP +  AA + 
Sbjct: 275 ALLRHPAVALAAAVG 289

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 95  GSKFVK--LISAGYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGC 150
           G+ +VK      GY+    V +  L  DGWM   D+ YED   F++IV   K+++ + G 
Sbjct: 334 GTVYVKSPQFFMGYIIGG-VLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGI 392

Query: 151 QVAPAELEHLLLSHPEMVDAAVI 173
            + P E+E +L  HP + +  VI
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVI 415

Length = 487

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
           +GY+ E        L DGW+ TGDL     D + ++    KDL+   G  + PA +E  L
Sbjct: 429 SGYL-EAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEAL 487

Query: 162 LSHPEMVDAAVI 173
           L HP +  AA +
Sbjct: 488 LRHPAVALAAAV 499

Length = 632

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+ E E+T+  L  +GW  +GDLC   E  ++ I    KD++   G  ++  E+E +LL
Sbjct: 394 GYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILL 453

Query: 163 SHPEMVDAAVI 173
            HP++ DA V+
Sbjct: 454 QHPKIHDACVV 464

Length = 547

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLL 161
           AGY    E   A    DGW RTGDL + D+  FL+I     D+    G  V P E+E  L
Sbjct: 378 AGYYNNPEAN-AKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKL 436

Query: 162 LSHPEMVDAAVI 173
           L+HP + + AV+
Sbjct: 437 LTHPAVSEVAVL 448

Length = 528

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 105 GYVGEQEVTSATLLP-DG--WMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           GY    E T+   +  DG  + RTGDL    E+ + FI D LK ++   G +V PAE+E+
Sbjct: 397 GYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVEN 456

Query: 160 LLLSHPEMVDAAVI 173
           LL  HP + +A VI
Sbjct: 457 LLYKHPAIQEACVI 470

Length = 546

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 121 GWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           GW  +GDL  +D   ++++VD  KD++   G  +  AE+E++L SHP++V+ AVI
Sbjct: 399 GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVI 453

Length = 542

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
           AGY    + T+  +  DG+ RTGD+    E  +  IVD  KD++   G  V P E+E ++
Sbjct: 418 AGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVV 477

Query: 162 LSHPEMVDAAVI 173
            SHP +++ A +
Sbjct: 478 ASHPGVLEVAAV 489

Length = 557

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+G +E  +++   DGW  TGDL Y  ED + + V    D++K  G  V P E+E  L+
Sbjct: 305 GYLGNEERYASSF-VDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALM 363

Query: 163 SHPEMVDAAVI 173
            HP + +A VI
Sbjct: 364 EHPAVAEAGVI 374

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 90  WVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKY 147
            +AV     V  +  GY    E T+A      W+ TGDL     D +L+      D++K 
Sbjct: 288 EIAVKRPDPVMFL--GYWNNPEATAAKFA-GDWLLTGDLGRRDADGYLWFKGRADDVIKS 344

Query: 148 KGCQVAPAELEHLLLSHPEMVDAAVIP 174
            G ++ PAE+E  LL HP +++AAV+ 
Sbjct: 345 SGYRIGPAEIEECLLKHPAVLEAAVVG 371

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           DGW+RTGD+     D FL I D  +D+++  G  +  A+LE+ +++ PE+V+ AVI
Sbjct: 429 DGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVI 484

Length = 576

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY-EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLS 163
           GY  ++E +   L  DGW+ TGDL Y  D +L+I    KDL+   G  + P ++E +   
Sbjct: 424 GYFRDEE-SQDVLAADGWLDTGDLGYLLDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQ 482

Query: 164 HPE 166
            PE
Sbjct: 483 EPE 485

Length = 579

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+ + E+T A     GW  TGD+     + FL+++    DL+   G  + P E+E +L 
Sbjct: 305 GYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLY 363

Query: 163 SHPEMVDAAVIP 174
            HP + +A V+P
Sbjct: 364 QHPGIQEAVVVP 375

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
            +AGY   +E T  T +   W RTGD     ED + +      D++K  G  V+P E+E 
Sbjct: 366 SAAGYWNRREKTRETFV-GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVED 424

Query: 160 LLLSHPEMVDAAVIP 174
            LL HP +++AAV+ 
Sbjct: 425 ALLQHPAVLEAAVVG 439

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 13/80 (16%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDG-------LKDLVKYKGCQVAP 154
           ++ GY    E T  TL  DGW+RTGD    D+     DG         D++K  G  V+P
Sbjct: 296 LAPGYWNLPEKTQRTL-RDGWLRTGDRFSRDA-----DGWYRYQGRADDMIKVSGQWVSP 349

Query: 155 AELEHLLLSHPEMVDAAVIP 174
            E+E  L  HP + +AAV+ 
Sbjct: 350 LEVEAALGEHPAVAEAAVVA 369

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY  + E T+     DG+  TGD  +  ED +L+ V    DL+K  G ++ P E+E  L+
Sbjct: 397 GYYRDPERTAEVWH-DGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALI 455

Query: 163 SHPEMVDAAV 172
            HP +++ AV
Sbjct: 456 QHPAVLECAV 465

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY+G+ E T A     G+ RTGD  Y  ED +L+ V    D+ K    +++P E+E  L
Sbjct: 292 LGYMGDPEKT-AAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESAL 350

Query: 162 LSHPEMVDAAVIP 174
           L HP + +AAV+P
Sbjct: 351 LEHPAVAEAAVVP 363

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 105 GYVGEQEVTSATLLP-----DGWMRTGDLCYEDSFLFI--VDGLKDLVKYKGCQVAPAEL 157
           GY  ++      L       D +  TGDL   D F +   VD L D  ++KG  V+  E+
Sbjct: 297 GYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEV 356

Query: 158 EHLLLSHPEMVDAAV 172
           E +L  HP + +A V
Sbjct: 357 EEVLAKHPGVEEANV 371

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    E T+  +  DGW+ TGD+   D   F++IVD  KD++   G  V P E+E ++ 
Sbjct: 421 GYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA 480

Query: 163 SHPEMVDAAVI 173
             P +++ A +
Sbjct: 481 MMPGVLEVAAV 491

Length = 560

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 114 SATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAA 171
           +   + DGW+ TGDL    ED F++IV   K+++   G  + P E+E ++    ++ + A
Sbjct: 364 TEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVA 423

Query: 172 VI 173
           V+
Sbjct: 424 VV 425

Length = 496

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 90  WVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKY 147
            +A+  +    L  +GY  + E T A L+   W  TGDL    ED + + +    D++  
Sbjct: 287 QLAIDVASSPLLWFSGYWDDPEKT-AELIAGRWYVTGDLVERDEDGYFWFIGRADDVIIS 345

Query: 148 KGCQVAPAELEHLLLSHPEMVDAAVI 173
            G ++ P ++E  LL HP + +AAV+
Sbjct: 346 AGYRIGPFDVESALLEHPAVAEAAVV 371

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+G+  +T+A    DGW+RTGDL        L I   +K+L+   G +++P  +E +L 
Sbjct: 393 GYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLA 451

Query: 163 SHPEMVDAAV 172
           SHP +++AAV
Sbjct: 452 SHPNVMEAAV 461

Length = 534

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 106 YVGEQEVTSATLLPDGWMRT-GDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           Y+ +   T+    PDG   T GD+ Y  ED +L++ D    ++   G  + P E E+LL+
Sbjct: 366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI 425

Query: 163 SHPEMVDAAVI 173
           +HP++ DAAV 
Sbjct: 426 THPKVADAAVF 436

Length = 511

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCYEDSF--LFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY G+   T++ L  DGW+ TGD+ + D    L+++    D +K  G  V P E+E +L
Sbjct: 397 LGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVL 456

Query: 162 LSHPEMVDAAVI 173
             HP +    V+
Sbjct: 457 SQHPGVASVVVV 468

Length = 563

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    E  +     DG+ R+GDL     D +L +   +KD +   G ++A  E+E+LLL
Sbjct: 398 GYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLL 457

Query: 163 SHPEMVDAAVI 173
            HP + DAA++
Sbjct: 458 RHPAVHDAALV 468

Length = 542

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           ++A Y          L  DG+  TGD+       ++ I D  KD++K  G  ++  +LE+
Sbjct: 394 VAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLEN 450

Query: 160 LLLSHPEMVDAAVI 173
           L + HP++ +AAVI
Sbjct: 451 LAVGHPKVAEAAVI 464

Length = 542

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 120 DGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           DG+M +GD+ Y D    LF+V    +++   G  V P E+E  L +HP++ +AAVI
Sbjct: 415 DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVI 470

Length = 537

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY G  E T      + W  TGD  +   D +   VD +KD ++ +G  ++  E+E +L
Sbjct: 384 TGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL 442

Query: 162 LSHPEMVDAAVIP 174
           LSHP +  AAV P
Sbjct: 443 LSHPAVAAAAVFP 455

Length = 542

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAV--IP 174
            G++ +GD+ Y   D +LF+ D  +D+V   G  + PAE+E +L + P + D AV  IP
Sbjct: 378 GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIP 436

Length = 509

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 93  VLGSKFV-------KLISAGYVGEQEVTSATLLPDGWMRTGDLCY-EDSFLFIVDGLKDL 144
           VL  + +         +++GY    E T  ++ PDGW++TGDL +  +  L I    KD+
Sbjct: 334 VLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLRNGRLVITGRAKDI 393

Query: 145 VKYKGCQVAPAELE 158
           +   G    P ++E
Sbjct: 394 IIVNGQNYYPHDIE 407

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 103 SAGYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEHL 160
           +  Y   +  T  T     W R+GD  +  +D          D++K  G  V+P E+E  
Sbjct: 367 ATMYWNNRAKTRDTFQ-GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESA 425

Query: 161 LLSHPEMVDAAVIP 174
           L+ HP +++AAV+ 
Sbjct: 426 LIQHPAVLEAAVVG 439

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDL-CYEDSFLFIVDG-LKDLVKYKGCQVAPAELEHLLL 162
           GY+ + + T A  L DGW RT D+   + S    + G + D++   G  + P+E+E +L 
Sbjct: 361 GYLNQPQAT-AEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLG 419

Query: 163 SHPEMVDAAVI 173
             P + +  VI
Sbjct: 420 RAPGVTEVVVI 430

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 119 PDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           P  W   GD     ED + +I+    D +K  G +V PAE+E +L SHP + +AA I
Sbjct: 334 PGVW-VHGDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAI 389

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 111 EVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMV 168
           E T+     DG+  TGDL    E  ++ IV   KDL+   G  V P E+E  +   P +V
Sbjct: 367 EKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVV 426

Query: 169 DAAVI 173
           ++AVI
Sbjct: 427 ESAVI 431

Length = 504

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    E  +A    +G+  TGDL       ++ +V   KD +   G ++A  E+E+LLL
Sbjct: 391 GYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLL 450

Query: 163 SHPEMVDAAVI 173
           +HP + DAA++
Sbjct: 451 AHPAVHDAALV 461

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 103 SAGYVGEQEVTSATLLPD---GWMRTGDL-CYEDSFLFIVDGLKD-LVKYKGCQVAPAEL 157
           S GY+   E T+     D    W RTGDL   ED  L +  G KD  +K  G ++   E+
Sbjct: 309 SPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEI 368

Query: 158 EHLLLSHPEMVDAAVIP 174
           E  L + P + +A V+P
Sbjct: 369 EAALRALPGVEEAVVLP 385

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 24/117 (20%)

Query: 64  LSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLG--SKFVK--------------LISAGYV 107
           +S +S  H+     VS+    R LS   A+ G  +K                  +  GY+
Sbjct: 351 MSETSGPHT-----VSNPQNYRLLSCGKALPGCETKIHNPDADGIGEICIWGRHVFMGYL 405

Query: 108 GEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQ-VAPAELEHLL 161
             +E T   +  DGW+ +GDL +  +D FL+I   +K+L+   G + V P  +E  +
Sbjct: 406 NMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAV 462

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 14/82 (17%)

Query: 102 ISAGYVGEQEVTSATLL--PDG--WMRTGDL-CYEDS----FLFIVDGLKDL-VKYKGCQ 151
           ++ GY G+ E+T+   +    G    RTGDL  Y       FL    G  D  VK +G +
Sbjct: 336 VALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFL----GRADHQVKIRGYR 391

Query: 152 VAPAELEHLLLSHPEMVDAAVI 173
           V   E+E  L  HP +  A V+
Sbjct: 392 VELGEIEAALARHPGVQRAVVV 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY  + E   A  +  G   +GDL Y D+  + +    L D ++  G  +  A +E +L
Sbjct: 365 EGYYNDPEAD-AERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERIL 423

Query: 162 LSHPEMVDAAVIP 174
           L +P+  + AV  
Sbjct: 424 LRYPDATEVAVYA 436

Length = 529

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+   + T       GW  TGDL   + D ++ I D  KD++   G  ++  E+E +L 
Sbjct: 401 GYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLY 459

Query: 163 SHPEMVDAAVI 173
            HP ++ AAV+
Sbjct: 460 RHPAVLVAAVV 470

Length = 545

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 102 ISAGYVGEQEVTSATLL------PDGWMRTGDL--CYEDSFLFIVDGLKDLVKYKGCQVA 153
           ++AGY    E T+ T          GW+RTGDL   ++   L++   LKDL+  +G    
Sbjct: 392 VAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLHDGE-LYVTGRLKDLIIIRGRNHY 450

Query: 154 PAELEHLL-LSHPEMVDAAV 172
           P ++E  +  +HP +   A 
Sbjct: 451 PQDIEATVERAHPALRPGAA 470

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
            YV   E T+AT+  D ++ TGD     ED + + V    D++   G ++ P E+E  L+
Sbjct: 387 CYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALI 445

Query: 163 SHPEMVDAAVI 173
            HP +V++AV+
Sbjct: 446 EHPAVVESAVV 456

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           DGW  TGD+    ED +   V    D++   G  +A  E+E  LL+HP++ + AVI
Sbjct: 364 DGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVI 419

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKD-LVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           DG + +GD+ Y  ED  LF VDG  D ++   G  V PAE+E LL  HP++V+AAVI
Sbjct: 426 DGLLSSGDVGYFDEDGLLF-VDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVI 481

Length = 549

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 14/81 (17%)

Query: 105 GYVGEQEVTSATLLPD----G--WMRTGDLCYEDS-----FLFIVDGLKDLVKYKGCQVA 153
           GY+   E+T+   +PD    G    RTGDL          FL  +D     VK +G ++ 
Sbjct: 336 GYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRID---RQVKIRGFRIE 392

Query: 154 PAELEHLLLSHPEMVDAAVIP 174
             E+E  LL HP + +AAV+ 
Sbjct: 393 LGEIEQALLQHPGVREAAVLV 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 118 LPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           L DGW  TGD+     D F+ I D  KD++K  G  ++  ++E++ ++HP + +AA I
Sbjct: 406 LVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACI 463

Length = 539

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLVK-----YKGCQVAP 154
           +  GY    E T+     DGW  TGD+     D  L I+D  K+L K     Y    VA 
Sbjct: 360 VFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEY----VAL 415

Query: 155 AELEHLLLSHP 165
            +LE++  S P
Sbjct: 416 EKLENIYKSSP 426

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 13/83 (15%)

Query: 102 ISAGYVGEQEVTSATLLPDG-------WMRTGDLCY---EDSFLFIVDGLKDL-VKYKGC 150
           ++ GY+G  E+T+   +PD          RTGDL     +    ++  G  D  VK +G 
Sbjct: 294 VARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYL--GRADDQVKIRGF 351

Query: 151 QVAPAELEHLLLSHPEMVDAAVI 173
           ++   E+E  L +HP + DA V+
Sbjct: 352 RIELGEIEAALRAHPGVADAVVV 374

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 111 EVTSATLLPDGWMRTGDLC--YEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMV 168
              +      GW  +GDL   + D ++ I D  KD++   G  ++  E+E +L  HP ++
Sbjct: 391 PEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVL 450

Query: 169 DAAVIP 174
           +AAV+ 
Sbjct: 451 EAAVVA 456

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 93  VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSF--LFIVDGLKDLVKYK 148
           V G  FV  +L    Y           + DG   TGD+ Y D+   LFIV    D++   
Sbjct: 370 VTGRIFVGGELAGTRYTD----GGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISG 425

Query: 149 GCQVAPAELEHLLLSHPEMVDAAVI 173
           G  V P  +E+ L +HP + D AVI
Sbjct: 426 GENVYPRAVENALAAHPAVADNAVI 450

Length = 516

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 120 DGWMRTGDLCYEDS---FLFI--VDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
             W  +GD  Y D    F F   VD   D++K  G +V P E+E  L+ HP + +A VI
Sbjct: 431 GDWYVSGDSAYMDEDGYFWFQGRVD---DVIKTSGERVGPFEVESKLMEHPAVAEAGVI 486

Length = 570

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 12/82 (14%)

Query: 102 ISAGYVGEQEVTSATLLPDGWM--------RTGDLCY--EDSFLFIVDGLKDL-VKYKGC 150
           ++ GY+   E+T+   +PD +         RTGDL     D  L  + G  D  VK +G 
Sbjct: 329 VARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFL-GRIDDQVKIRGY 387

Query: 151 QVAPAELEHLLLSHPEMVDAAV 172
           ++   E+E  LL HP + +A V
Sbjct: 388 RIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 120 DGWMRTGDL--CYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAV 172
           D W  TGDL           VD L D  ++KG  VA  E+E+ L   P + +A V
Sbjct: 438 DAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVV 492

Length = 600

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 105 GYVGEQEVTSATLLPDGWM--------RTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAP 154
           GY+G  E+T+   LP+ +         RTGDL     D  L  +  + D VK +G ++  
Sbjct: 307 GYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIEL 366

Query: 155 AELEHLLLSHPEMVDAAVIP 174
            E+E  L S P + +A V+ 
Sbjct: 367 GEIEAALRSIPGVAEAVVVA 386

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCYEDS--FLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY    E T A  +  G   +GDL Y D+  +++      D ++  G  ++ A +E +L
Sbjct: 364 EGYYNNPEAT-AERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERIL 422

Query: 162 LSHPEMVDAAVIP 174
           L HP +   AV  
Sbjct: 423 LRHPAINRVAVYA 435

Length = 540

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I+ GY G +E T + L PDG+ RTGD+    E+ ++ I D LKDL+K  G  ++  +LE+
Sbjct: 370 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 429

Query: 160 LLLSHPEMVDAAVI 173
            L+ HP++ +AAV+
Sbjct: 430 ALMGHPKVKEAAVV 443

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY-EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           +GY+G+       + PD W  TGDL Y  D  L +    K+L+   G  + P E+E
Sbjct: 384 SGYLGQA-----PIDPDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIE 434

Length = 525

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 15/86 (17%)

Query: 101 LISAGYVGEQEVTSATLLPDGWM---------RTGDL---CYEDSFLFIVDGLKD-LVKY 147
            ++ GY+   E+T+   +PD +          RTGDL     + S  F+  G KD  VK 
Sbjct: 294 GVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFL--GRKDDQVKI 351

Query: 148 KGCQVAPAELEHLLLSHPEMVDAAVI 173
           +G ++   E+E +L + P +V AAV+
Sbjct: 352 RGQRIELGEIEAVLRALPGVVVAAVV 377

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 91  VAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLVKYK 148
           + + GS  +K    GY+   + TS      GW+ TGD+   + D  + I D  KD++   
Sbjct: 395 IVIKGSSIMK----GYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISG 449

Query: 149 GCQVAPAELEHLLLSHPEMVDAAVI 173
           G  ++  E+E++L  +P++++ AV+
Sbjct: 450 GENISSVEVENVLYKYPKVLETAVV 474

Length = 579

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY+   ++       DGW  TGDL     D ++ I    KD++   G  +   E+E LL
Sbjct: 404 GGYLKRPQLNGT--DADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALL 461

Query: 162 LSHPEMVDAAVI 173
             HP +   A++
Sbjct: 462 YRHPAIAQVAIV 473

Length = 547

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
            G+  TGD  Y  ED +LF++    D++   G +++  E+E  +L HP++ + AV+
Sbjct: 460 PGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVV 515

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           +G+  +GDL     D ++ +V   KD +   G ++A  E+E+LLL HP ++ AA++
Sbjct: 408 NGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALV 463

Length = 536

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 74  LPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDS 133
           L    +  LL+R  S +              GY+    + S     +GW  TGDL ++D+
Sbjct: 385 LSQGETGRLLVRGCSNF-------------GGYLKRPHLNSTD--AEGWFDTGDLAFQDA 429

Query: 134 --FLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
             ++ I    KD++   G  +   E+E+LL  HP +   A++
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIV 471

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 105 GYVGEQEVTSATLLPD------GWMRTGDLCYEDSF--LFIVDGLKDLVKYKGCQVAPAE 156
           GY+  ++ T + LL D       W RTGDL  +D+    + +D L D  ++K   V+  E
Sbjct: 316 GYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGE 375

Query: 157 LEHLLLSHPEMVDAAV 172
           +  +L + P + +A V
Sbjct: 376 VADVLGAIPSVAEANV 391

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 103 SAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHL 160
           + GY+   ++T+   +     RTGDL     D  L  +      VK +G ++   E+E  
Sbjct: 578 ALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAA 637

Query: 161 LLSHP 165
           L   P
Sbjct: 638 LAEQP 642

Length = 642

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 37.4 bits (88), Expect = 0.002
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 17/83 (20%)

Query: 105 GYVGEQEVTSATLLPDGWM-------RTGDLCYEDS-----FLFIVDGLKDL-VKYKGCQ 151
           GY+   E+T+   +PD +        RTGDL          FL    G  D  VK +G +
Sbjct: 304 GYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFL----GRADDQVKIRGYR 359

Query: 152 VAPAELEHLLLSHPEMVDAAVIP 174
           +   E+E  LL+HP + +A V+ 
Sbjct: 360 IELGEIEAALLAHPGVREAVVVA 382

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 106 YVGEQEVTSATLLPDG--WMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
           Y+ + E T+A   P    W   GDL    ED +L++ D    ++   G  + P E E+ L
Sbjct: 362 YLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENAL 421

Query: 162 LSHPEMVDAAVI 173
             HP + D AVI
Sbjct: 422 TMHPAVHDVAVI 433

Length = 501

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 102 ISAGYVGEQEVTSA-TLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           + +GY+  +E TS   +L DGW  TGD+    ED FL IV  LK   K  G  V+   +E
Sbjct: 348 VMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVE 407

Query: 159 HLLLSHPE 166
            LL     
Sbjct: 408 ELLSEILP 415

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           ++ GY    E ++   + D ++ TGD+ Y   D + F+VD  KD++   G  V P  +E 
Sbjct: 403 VTRGYWNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQ 461

Query: 160 LLLSHPEMVDAAVI 173
            +  HP + +  VI
Sbjct: 462 AIYEHPGVQEVIVI 475

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLC--YEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    E T+  L+ DGW+ TGDL    ED F +I     +++   G  +AP E++ +  
Sbjct: 387 GYWNNPERTAEVLI-DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE 445

Query: 163 SHPEMVDAA 171
               + +AA
Sbjct: 446 GVSGVREAA 454

Length = 540

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 102 ISAGYVGEQEVTSATLLP-DG--WMRTGDLCY-EDSFLFIVDGLKDLVKYKGCQVAPAEL 157
           I+ GY    E ++ T +  DG  W+RTGDL +  D  LF+   LKD++  +G  + P ++
Sbjct: 407 IAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLYPQDI 466

Query: 158 EHLLLSHPEMV 168
           E  +    E+V
Sbjct: 467 EKTVEREVEVV 477

Length = 4334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	99.98
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.96
PLN02614	666	long-chain acyl-CoA synthetase	99.95
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.95
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.95
PLN02736	651	long-chain acyl-CoA synthetase	99.95
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	99.94
PLN02574	560	4-coumarate--CoA ligase-like	99.94
PLN02860	563	o-succinylbenzoate-CoA ligase	99.94
PTZ00342	746	acyl-CoA synthetase; Provisional	99.94
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK09274	552	peptide synthase; Provisional	99.94
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.94
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.94
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.93
PLN02246	537	4-coumarate--CoA ligase	99.93
PRK06060	705	acyl-CoA synthetase; Validated	99.93
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.93
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.93
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.93
PLN02654	666	acetate-CoA ligase	99.93
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.93
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.93
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.93
PRK00174	637	acetyl-CoA synthetase; Provisional	99.93
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.93
PRK09088	488	acyl-CoA synthetase; Validated	99.93
PRK06145	497	acyl-CoA synthetase; Validated	99.93
PLN02330	546	4-coumarate--CoA ligase-like 1	99.92
PRK07638	487	acyl-CoA synthetase; Validated	99.92
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.92
PTZ00216	700	acyl-CoA synthetase; Provisional	99.92
PRK07529	632	AMP-binding domain protein; Validated	99.92
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.92
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.92
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.92
PRK12467	3956	peptide synthase; Provisional	99.92
PRK12316	5163	peptide synthase; Provisional	99.92
PLN03051	499	acyl-activating enzyme; Provisional	99.92
PRK06839	496	acyl-CoA synthetase; Validated	99.92
PRK07788	549	acyl-CoA synthetase; Validated	99.92
PRK05852	534	acyl-CoA synthetase; Validated	99.92
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.92
PRK04319	570	acetyl-CoA synthetase; Provisional	99.92
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.92
PRK12583	558	acyl-CoA synthetase; Provisional	99.92
PRK08316	523	acyl-CoA synthetase; Validated	99.91
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.91
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.91
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	99.91
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.91
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.91
PRK08315	559	AMP-binding domain protein; Validated	99.91
PRK07787	471	acyl-CoA synthetase; Validated	99.91
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.91
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.91
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.91
PRK12316	5163	peptide synthase; Provisional	99.91
PRK12467	3956	peptide synthase; Provisional	99.91
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.91
PRK13390	501	acyl-CoA synthetase; Provisional	99.91
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.91
PRK07514	504	malonyl-CoA synthase; Validated	99.91
PRK05691	4334	peptide synthase; Validated	99.91
PRK05857	540	acyl-CoA synthetase; Validated	99.91
PRK13382	537	acyl-CoA synthetase; Provisional	99.91
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.91
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.91
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.91
PRK05691	4334	peptide synthase; Validated	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.9
PRK09192	579	acyl-CoA synthetase; Validated	99.9
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.9
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.9
PRK12582	624	acyl-CoA synthetase; Provisional	99.9
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.9
PRK07470	528	acyl-CoA synthetase; Validated	99.9
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.9
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.9
PRK05850	578	acyl-CoA synthetase; Validated	99.9
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.9
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.9
PLN03102	579	acyl-activating enzyme; Provisional	99.9
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.89
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.89
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.89
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.89
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.89
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.89
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.89
PRK06164	540	acyl-CoA synthetase; Validated	99.89
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.89
PRK06188	524	acyl-CoA synthetase; Validated	99.89
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.89
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.89
PRK13391	511	acyl-CoA synthetase; Provisional	99.88
PRK07798	533	acyl-CoA synthetase; Validated	99.88
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.88
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.88
PRK06178	567	acyl-CoA synthetase; Validated	99.88
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.88
PRK13383	516	acyl-CoA synthetase; Provisional	99.88
PLN02479	567	acetate-CoA ligase	99.88
PRK13388	540	acyl-CoA synthetase; Provisional	99.88
PRK07867	529	acyl-CoA synthetase; Validated	99.88
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.88
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.88
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.87
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	99.87
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.87
PRK08162	545	acyl-CoA synthetase; Validated	99.86
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.86
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.86
PRK07868	994	acyl-CoA synthetase; Validated	99.86
PLN03052	728	acetate--CoA ligase; Provisional	99.84
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.84
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.81
PRK08308	414	acyl-CoA synthetase; Validated	99.76
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.66
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.64
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.6
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.55
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.32
PRK09188	365	serine/threonine protein kinase; Provisional	99.3
PTZ00297	1452	pantothenate kinase; Provisional	99.08
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.02
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	98.44
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	97.98
KOG3628	1363	consensus Predicted AMP-binding protein [General f	97.7
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.03
PLN02249	597	indole-3-acetic acid-amido synthetase	96.25
KOG3628	1363	consensus Predicted AMP-binding protein [General f	95.18
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	91.89
PLN02247	606	indole-3-acetic acid-amido synthetase	81.62
PLN02620	612	indole-3-acetic acid-amido synthetase	80.36

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.98  E-value=1.4e-32  Score=237.16  Aligned_cols=159  Identities=29%  Similarity=0.399  Sum_probs=138.0

Q ss_pred             ccceecccccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-cCCc--------------ccc
Q 030653           16 SLLKTKIFLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-LPSV--------------VSS   80 (174)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-~~~~--------------~~~   80 (174)
                      .|.+...+....+.+++.+.++|.++++++++++++.+|+..+.+.||+||++..... ....              ...
T Consensus       286 ~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~  365 (537)
T KOG1176|consen  286 MLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVK  365 (537)
T ss_pred             HHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEE
Confidence            3445556777889999999999999999999999999999999999999999832222 1111              111


Q ss_pred             cccccCcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           81 SLLIRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        81 ~~~~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      ..+..+..++.++.|||++  ++++.||++||++|++.|+.+|||+|||+|++  ||+|+|.+|.+|+||.+|++|+|.|
T Consensus       366 v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~E  445 (537)
T KOG1176|consen  366 VLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAE  445 (537)
T ss_pred             eeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHH
Confidence            1245567888899999999  99999999999999999977799999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|..||.|.||||||
T Consensus       446 iE~vL~~hP~V~eaaVvg  463 (537)
T KOG1176|consen  446 IEAVLLTHPDVLEAAVVG  463 (537)
T ss_pred             HHHHHHhCCCccEEEEEc
Confidence            999999999999999997

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=1.1e-28  Score=214.05  Aligned_cols=145  Identities=26%  Similarity=0.357  Sum_probs=123.5

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCc----------------ccccccccCcccccCC
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSV----------------VSSSLLIRTLSMWVAV   93 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~   93 (174)
                      .++.+..|+..++++.++++++.++..+++..||+||++++....+..                .....+.+++++..+.
T Consensus       292 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~  371 (534)
T COG0318         292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGE  371 (534)
T ss_pred             ceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCCCC
Confidence            389999999999999999999999988999999999998544332221                1222333343222377


Q ss_pred             cCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcce
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVD  169 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~  169 (174)
                      +|||++  |+++.|||++|+.|+..|+.+|||+|||+|++  ||+++|+||.+|+|+++|++|+|.|||+++.+||.|.+
T Consensus       372 vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~  451 (534)
T COG0318         372 VGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAE  451 (534)
T ss_pred             ceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcce
Confidence            899999  99999999999999998855699999999988  89999999999999999999999999999999999999


Q ss_pred             EEEeC
Q 030653          170 AAVIP  174 (174)
Q Consensus       170 ~~Vvg  174 (174)
                      ++|+|
T Consensus       452 aavvg  456 (534)
T COG0318         452 AAVVG  456 (534)
T ss_pred             EEEEe
Confidence            99987

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.95  E-value=5.9e-28  Score=214.35  Aligned_cols=144  Identities=19%  Similarity=0.191  Sum_probs=118.3

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccc---cCcccc
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLI---RTLSMW   90 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~---~~~~~~   90 (174)
                      ..++.+.+|+.++++. ++++.+.+++..+++.||+||++.+....               |.......+.   .+..++
T Consensus       386 ~~lr~~~~Gga~l~~~-~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~  464 (666)
T PLN02614        386 GNVRIILSGAAPLASH-VESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALA  464 (666)
T ss_pred             CcEEEEEEcCCCCCHH-HHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCC
Confidence            4578889999999865 67788888888999999999976432211               1111111111   123456


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~  165 (174)
                      .++.|||++  |+++.|||++|+.|+++| .+|||+|||+|++  ||+|+|+||+||+||+ +|++|+|.|||++|.+||
T Consensus       465 ~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p  543 (666)
T PLN02614        465 STPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQ  543 (666)
T ss_pred             CCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCC
Confidence            678999999  999999999999999999 5899999999999  9999999999999996 799999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+++|+|
T Consensus       544 ~V~~~~V~g  552 (666)
T PLN02614        544 AVDSVWVYG  552 (666)
T ss_pred             CeeEEEEEe
Confidence            999999997

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.95  E-value=1.2e-27  Score=208.64  Aligned_cols=144  Identities=23%  Similarity=0.245  Sum_probs=130.3

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcccccc----cccCcccccCCcCeEEe--Ccc
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSL----LIRTLSMWVAVLGSKFV--KLI  102 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Gel~v--~~v  102 (174)
                      -.++.+.+||.+++++....++...  +.+++.||+||+++...+.+.......    +..+.++.....|||+|  |+|
T Consensus       353 gri~~~~sGGa~l~~~~~~f~~~lG--i~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d~GEilVRG~~V  430 (613)
T COG1022         353 GRIRYALSGGAPLSPELLHFFRSLG--IPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIADDGEILVRGPNV  430 (613)
T ss_pred             CcEEEEEecCCcCCHHHHHHHHHcC--CCeEEEecccccccceEEccccCcccCCcCCcCCCceEEEccCceEEEecchh
Confidence            4678999999999999999999875  899999999999887777654443322    55677888888999999  999


Q ss_pred             cccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653          103 SAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       103 ~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      |+|||++|++|+++|++||||+|||+|++  ||+|+++||++++||+ +|++|.|+.||+.+.++|.|.+++|+|
T Consensus       431 m~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg  505 (613)
T COG1022         431 MKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG  505 (613)
T ss_pred             cchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe
Confidence            99999999999999999999999999999  9999999999999999 999999999999999999999999987

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.95  E-value=4.6e-27  Score=203.67  Aligned_cols=148  Identities=18%  Similarity=0.123  Sum_probs=121.2

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccc-cCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLI-RTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~-~~~~~~   90 (174)
                      .+..++.+.+||+.+++.+.+++++.+|+..+++.||+||++.+....               +.......+. .+..++
T Consensus       297 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~  376 (539)
T PRK06334        297 CLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVS  376 (539)
T ss_pred             ccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCC
Confidence            456789999999999999999999999999999999999986433221               1111111221 234677


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccc-cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATL-LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~-~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      .++.|||++  ++++.|||++++.+.... ..++||+|||+|++  ||+|+|+||.||+||++|++|+|.|||++|.+||
T Consensus       377 ~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~  456 (539)
T PRK06334        377 SGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGF  456 (539)
T ss_pred             CCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHcc
Confidence            789999999  999999999998654332 34689999999999  9999999999999999999999999999999999


Q ss_pred             Ccce------EEEeC
Q 030653          166 EMVD------AAVIP  174 (174)
Q Consensus       166 ~V~~------~~Vvg  174 (174)
                      +|.+      ++|+|
T Consensus       457 ~v~~~~~~~~~~v~~  471 (539)
T PRK06334        457 GQNAADHAGPLVVCG  471 (539)
T ss_pred             CCccccccCceEEEc
Confidence            9987      66654

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.95  E-value=1.8e-27  Score=210.42  Aligned_cols=144  Identities=19%  Similarity=0.181  Sum_probs=118.0

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee--------------eccCCcccccccccC----ccccc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH--------------SLLPSVVSSSLLIRT----LSMWV   91 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~--------------~~~~~~~~~~~~~~~----~~~~~   91 (174)
                      .++.+.+||.+++++..+.+++.++ ..+++.||+||++...              .+.|.......+.+.    .....
T Consensus       377 ~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~  455 (651)
T PLN02736        377 RVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQP  455 (651)
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCC
Confidence            6788999999999999999998874 7899999999986322              122222222222111    11122


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCCC
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~~  166 (174)
                      +..|||++  |+++.|||++|+.|++.|+.+|||+|||+|++  ||+|+|+||+||+||+ +|++|+|.|||++|.+||.
T Consensus       456 ~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~  535 (651)
T PLN02736        456 YPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKF  535 (651)
T ss_pred             CCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCC
Confidence            34699999  99999999999999999978999999999999  9999999999999997 7999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+|+|+|
T Consensus       536 V~~a~V~g  543 (651)
T PLN02736        536 VAQCFVYG  543 (651)
T ss_pred             eeEEEEEe
Confidence            99999986

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=99.94  E-value=2.6e-27  Score=197.42  Aligned_cols=158  Identities=22%  Similarity=0.244  Sum_probs=138.5

Q ss_pred             cceecccccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceee-----------------eeccCCccc
Q 030653           17 LLKTKIFLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTC-----------------HSLLPSVVS   79 (174)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~-----------------~~~~~~~~~   79 (174)
                      |+++..+.+-.+..++.+..+|.+.++++++.+.+...--.+...||+||+++.                 +...++...
T Consensus       338 lln~~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea  417 (596)
T KOG1177|consen  338 LLNIPQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEA  417 (596)
T ss_pred             HhcchhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccc
Confidence            445666777788889999999999999999999997764457789999999843                 334444445


Q ss_pred             ccccccCcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChH
Q 030653           80 SSLLIRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPA  155 (174)
Q Consensus        80 ~~~~~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~  155 (174)
                      ..++.++.+++.+..|||++  ++.|.|||+++++|.++...|.||+|||++.+  +|+++++||.+|+|+.+|++|+|.
T Consensus       418 ~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~  497 (596)
T KOG1177|consen  418 AIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPT  497 (596)
T ss_pred             ccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChH
Confidence            55676777888899999999  89999999999999999988999999999999  999999999999999999999999


Q ss_pred             HHHHHHhcCCCcceEEEeC
Q 030653          156 ELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       156 eVE~~l~~~~~V~~~~Vvg  174 (174)
                      |||+.|.+||.|.++.|||
T Consensus       498 ElE~fL~~hp~V~~a~VVG  516 (596)
T KOG1177|consen  498 ELEDFLNKHPLVKEAHVVG  516 (596)
T ss_pred             HHHHHHhhCCCeeeEEEEc
Confidence            9999999999999999987

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.94  E-value=5.8e-27  Score=203.55  Aligned_cols=148  Identities=32%  Similarity=0.530  Sum_probs=127.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee----------------ccCCccccccc-ccCccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS----------------LLPSVVSSSLL-IRTLSM   89 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~----------------~~~~~~~~~~~-~~~~~~   89 (174)
                      .+..++.+.++++.++++.++++.+.+|+..+++.||+||++.+..                ..+.....+++ ..+..+
T Consensus       317 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~  396 (560)
T PLN02574        317 VLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL  396 (560)
T ss_pred             ccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCC
Confidence            4567889999999999999999999999999999999999864322                11222222233 345567


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.++.|||++  |+++.||+++++.+++.|+.+|||+|||+|++  ||+++++||.+|+||++|++|+|.|||++|.+||
T Consensus       397 ~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~  476 (560)
T PLN02574        397 PPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHP  476 (560)
T ss_pred             CCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCC
Confidence            7889999999  99999999999999988878999999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      +|.+++|+|
T Consensus       477 ~V~~~~v~~  485 (560)
T PLN02574        477 EIIDAAVTA  485 (560)
T ss_pred             CcceEEEEc
Confidence            999999986

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.94  E-value=9.1e-27  Score=202.45  Aligned_cols=148  Identities=19%  Similarity=0.300  Sum_probs=121.9

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCC-c-----------------------cc--c
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPS-V-----------------------VS--S   80 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~-~-----------------------~~--~   80 (174)
                      .+..++.++++|+.+++.+.+.+++.||+..+++.||+||++........ .                       ..  .
T Consensus       286 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (563)
T PLN02860        286 VFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVC  365 (563)
T ss_pred             cccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcc
Confidence            45678999999999999999999999999999999999998642211100 0                       00  0


Q ss_pred             cc-cccCcccc-----cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcE
Q 030653           81 SL-LIRTLSMW-----VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGC  150 (174)
Q Consensus        81 ~~-~~~~~~~~-----~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~  150 (174)
                      .. +..+.++.     .++.|||++  |+++.|||++|+.+++.+..+|||+|||+|++  ||+++|+||.+|+||++|+
T Consensus       366 vG~p~~~~~v~i~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~  445 (563)
T PLN02860        366 VGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGE  445 (563)
T ss_pred             cCCccCCcEEEEecCCCCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCE
Confidence            00 11111221     357899999  99999999999999988877899999999999  9999999999999999999


Q ss_pred             EeChHHHHHHHhcCCCcceEEEeC
Q 030653          151 QVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       151 ~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      +|+|.+||++|.+||+|.+++|+|
T Consensus       446 ~v~p~eIE~~l~~~p~V~~~~v~~  469 (563)
T PLN02860        446 NVYPEEVEAVLSQHPGVASVVVVG  469 (563)
T ss_pred             EccHHHHHHHHHhCCCcceeEEEE
Confidence            999999999999999999999985

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.94  E-value=7.1e-27  Score=209.54  Aligned_cols=145  Identities=19%  Similarity=0.142  Sum_probs=119.0

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccccC-cccccC
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLIRT-LSMWVA   92 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~~~-~~~~~~   92 (174)
                      ..++.+.+||.++++++.+.++..+ +..+++.||+||++......               |.......+.+. ......
T Consensus       461 ~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~  539 (746)
T PTZ00342        461 PNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTL  539 (746)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCCC
Confidence            4688999999999999999999876 57899999999986433221               111111111111 111123


Q ss_pred             CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCCCc
Q 030653           93 VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        93 ~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~~V  167 (174)
                      ..|||++  |++|.|||++|+.|+++|+.+|||+|||+|++  ||+|+|+||++|+||+ +|++|+|.+||++|..||.|
T Consensus       540 ~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V  619 (746)
T PTZ00342        540 PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI  619 (746)
T ss_pred             CceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCc
Confidence            4699999  99999999999999999988999999999999  9999999999999996 79999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+|+|+|
T Consensus       620 ~~~~VvG  626 (746)
T PTZ00342        620 NFCVVYG  626 (746)
T ss_pred             cEEEEEc
Confidence            9999997

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=5.8e-27  Score=206.23  Aligned_cols=148  Identities=22%  Similarity=0.245  Sum_probs=120.7

Q ss_pred             CccccceEEEccccCChhhHHHHHhhC-----CCCeEEcCCCCCcceeeeeccCCcc-----------------------
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTL-----PTRRLLLPSVLSSSSTCHSLLPSVV-----------------------   78 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~-----p~~~i~~~yg~te~~~~~~~~~~~~-----------------------   78 (174)
                      .+..++.+.+|++.++++.++.+.+.|     |...+++.||+||++.+....+...                       
T Consensus       304 ~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  383 (631)
T PRK07769        304 DLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPAD  383 (631)
T ss_pred             chhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCC
Confidence            456789999999999999999999987     4457999999999865433221100                       


Q ss_pred             ------------------ccccc-ccCcccccCCcCeEEe--CcccccccCCccccccccc-----------------CC
Q 030653           79 ------------------SSSLL-IRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL-----------------PD  120 (174)
Q Consensus        79 ------------------~~~~~-~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~-----------------~~  120 (174)
                                        ...++ ..+.+++.++.|||++  |+++.|||++++.|++.|.                 .+
T Consensus       384 ~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~  463 (631)
T PRK07769        384 APNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA  463 (631)
T ss_pred             CCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCC
Confidence                              00111 2345677789999999  9999999999999988873                 24


Q ss_pred             CeEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHHHHhc-CCCcce--EEEeC
Q 030653          121 GWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLS-HPEMVD--AAVIP  174 (174)
Q Consensus       121 g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~-~~~V~~--~~Vvg  174 (174)
                      |||+|||+|++ ||+|+|+||.||+||++|++|+|.|||++|.+ ||.|.+  ++|+|
T Consensus       464 gw~~TGDlg~~~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~  521 (631)
T PRK07769        464 LWVRTGDYGVYFDGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFS  521 (631)
T ss_pred             CeeeccccccEECCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEE
Confidence            89999999999 99999999999999999999999999999996 899997  77764

>PRK09274 peptide synthase; Provisional

Probab=99.94  E-value=2.1e-26  Score=199.28  Aligned_cols=148  Identities=19%  Similarity=0.273  Sum_probs=123.0

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCC-CCeEEcCCCCCcceeeeeccC------------------------Cccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLP-TRRLLLPSVLSSSSTCHSLLP------------------------SVVSSS   81 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p-~~~i~~~yg~te~~~~~~~~~------------------------~~~~~~   81 (174)
                      .+..++.+.++|+.+++...+.+++.++ +.++++.||+||++.+.....                        ......
T Consensus       286 ~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i  365 (552)
T PRK09274        286 KLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRI  365 (552)
T ss_pred             CCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEE
Confidence            4567899999999999999999999998 489999999999875432111                        111111


Q ss_pred             ccc---------cCcccccCCcCeEEe--CcccccccCCcccccccc--cCCC--eEecCCeeee--CCeEEEEeccCCe
Q 030653           82 LLI---------RTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATL--LPDG--WMRTGDLCYE--DSFLFIVDGLKDL  144 (174)
Q Consensus        82 ~~~---------~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~--~~~g--~~~TGD~g~~--dG~l~~~GR~~d~  144 (174)
                      ++.         .+.+++.++.|||++  |.++.|||++++.|...+  +.+|  ||+|||+|++  ||+|+++||.||+
T Consensus       366 vd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~  445 (552)
T PRK09274        366 IAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHR  445 (552)
T ss_pred             EeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCe
Confidence            111         234567788999999  999999999999888765  3456  9999999999  9999999999999


Q ss_pred             EEECcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653          145 VKYKGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       145 i~~~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       446 i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~  475 (552)
T PRK09274        446 VETAGGTLYTIPCERIFNTHPGVKRSALVG  475 (552)
T ss_pred             EEECCEEECcHHHHHHHHhCcccceeEEEE
Confidence            999999999999999999999999999985

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.94  E-value=1.3e-26  Score=205.07  Aligned_cols=147  Identities=17%  Similarity=0.174  Sum_probs=123.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---------------cCCcccccccccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---------------LPSVVSSSLLIRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---------------~~~~~~~~~~~~~~~~~~   91 (174)
                      .+..++.+.++|++++++..+.+++.+. +.+++.||+||++.+...               .+.......+..+.+++.
T Consensus       378 ~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~  456 (647)
T PTZ00237        378 DLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNV  456 (647)
T ss_pred             CcchheEEEecCccCCHHHHHHHHHhcC-CCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCC
Confidence            4567899999999999999999998874 889999999998743211               111112223445667778


Q ss_pred             CCcCeEEe--C---cccccccCCcccccccccC-CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhc
Q 030653           92 AVLGSKFV--K---LISAGYVGEQEVTSATLLP-DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLS  163 (174)
Q Consensus        92 ~~~Gel~v--~---~v~~gY~~~~~~t~~~~~~-~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~  163 (174)
                      ++.|||++  |   +++.|||++++.+.+.|.. +|||+|||+|++  ||+++|+||+||+||++|+||+|.|||++|.+
T Consensus       457 ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~  536 (647)
T PTZ00237        457 NEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILK  536 (647)
T ss_pred             CCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHh
Confidence            89999998  3   8899999999998877743 799999999999  99999999999999999999999999999999


Q ss_pred             CCCcceEEEeC
Q 030653          164 HPEMVDAAVIP  174 (174)
Q Consensus       164 ~~~V~~~~Vvg  174 (174)
                      ||.|.+|+|+|
T Consensus       537 ~p~V~eaavvg  547 (647)
T PTZ00237        537 HPLVLECCSIG  547 (647)
T ss_pred             CCCceeeEEEe
Confidence            99999999986

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.94  E-value=8.5e-27  Score=206.68  Aligned_cols=143  Identities=18%  Similarity=0.133  Sum_probs=113.4

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCccccccc--ccC-ccccc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLL--IRT-LSMWV   91 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~--~~~-~~~~~   91 (174)
                      .++.+.+|+.++++.. .++.+.++...+++.||+||++......               +.......+  ..+ .....
T Consensus       384 ~lr~~~~Ggapl~~~~-~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~  462 (660)
T PLN02861        384 RVRLLLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD  462 (660)
T ss_pred             cEEEEEECCCCCCHHH-HHHHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCC
Confidence            5788999999999886 5566777766799999999985322211               111111111  001 11122


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCCC
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~~  166 (174)
                      +..|||++  |+++.|||++|+.|+++| .+|||+|||+|++  ||+|+|+||+||+||+ +|++|+|.+||++|.+||.
T Consensus       463 ~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~  541 (660)
T PLN02861        463 VPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPL  541 (660)
T ss_pred             CCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCC
Confidence            35799999  999999999999999999 5899999999999  9999999999999997 7999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+|+|+|
T Consensus       542 V~~a~V~G  549 (660)
T PLN02861        542 IASIWVYG  549 (660)
T ss_pred             eeEEEEEe
Confidence            99999986

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.93  E-value=4.3e-26  Score=203.36  Aligned_cols=145  Identities=21%  Similarity=0.174  Sum_probs=115.0

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------CCccccccc-ccCccc---c
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------PSVVSSSLL-IRTLSM---W   90 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------~~~~~~~~~-~~~~~~---~   90 (174)
                      ..++.+.+||.++++++.+.++..+ +..+++.||+||++......              |.......+ .+++..   .
T Consensus       420 ~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~  498 (696)
T PLN02387        420 GRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDK  498 (696)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCC
Confidence            3688999999999999987777666 67899999999986433221              111111112 111111   1


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccc--cCCC--eEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHH
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATL--LPDG--WMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLL  161 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~--~~~g--~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l  161 (174)
                      ....|||++  |++|.|||++|+.|+++|  +.+|  ||+|||+|++  ||+|+|+||+||+||+ +|++|+|.+||++|
T Consensus       499 ~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l  578 (696)
T PLN02387        499 PMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL  578 (696)
T ss_pred             CCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHH
Confidence            234699999  999999999999999998  3345  9999999999  9999999999999998 69999999999999


Q ss_pred             hcCCCcceEEEeC
Q 030653          162 LSHPEMVDAAVIP  174 (174)
Q Consensus       162 ~~~~~V~~~~Vvg  174 (174)
                      .+||.|.+++|+|
T Consensus       579 ~~~p~V~~~~V~g  591 (696)
T PLN02387        579 SVSPYVDNIMVHA  591 (696)
T ss_pred             hcCCCeeEEEEEe
Confidence            9999999999986

>PLN02246 4-coumarate--CoA ligase

Probab=99.93  E-value=7.8e-26  Score=195.24  Aligned_cols=148  Identities=34%  Similarity=0.466  Sum_probs=126.0

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc-------------------CCccccccc-ccC
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL-------------------PSVVSSSLL-IRT   86 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~-------------------~~~~~~~~~-~~~   86 (174)
                      .+..++.+.++++.+++.+.+.+++.+|+..+++.||+||++.+....                   +.......+ ..+
T Consensus       296 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~  375 (537)
T PLN02246        296 DLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETG  375 (537)
T ss_pred             CccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCC
Confidence            456789999999999999999999999999999999999987542211                   111111122 234


Q ss_pred             cccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHh
Q 030653           87 LSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLL  162 (174)
Q Consensus        87 ~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~  162 (174)
                      ..++.++.|||++  +.++.||+++++.+...+..++||+|||++++  ||+++++||.||+||++|++|+|.+||++|.
T Consensus       376 ~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~  455 (537)
T PLN02246        376 ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI  455 (537)
T ss_pred             CcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHH
Confidence            5677789999999  99999999999999988877899999999999  8999999999999999999999999999999


Q ss_pred             cCCCcceEEEeC
Q 030653          163 SHPEMVDAAVIP  174 (174)
Q Consensus       163 ~~~~V~~~~Vvg  174 (174)
                      ++|+|.+++|++
T Consensus       456 ~~~~v~~~~v~~  467 (537)
T PLN02246        456 SHPSIADAAVVP  467 (537)
T ss_pred             hCCCeeEEEEEc
Confidence            999999999985

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.93  E-value=8.4e-26  Score=201.29  Aligned_cols=145  Identities=18%  Similarity=0.212  Sum_probs=122.1

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee--------------ccCCcccccccccCcccccC
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS--------------LLPSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~--------------~~~~~~~~~~~~~~~~~~~~   92 (174)
                      .+..++.+.++|+.+++.+.+++.+.+++.++++.||+||++....              +.+.......+..+..++.+
T Consensus       258 ~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g  337 (705)
T PRK06060        258 SFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPG  337 (705)
T ss_pred             cccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCC
Confidence            3557899999999999999999999999999999999999864322              11111122223445567778


Q ss_pred             CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcc
Q 030653           93 VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMV  168 (174)
Q Consensus        93 ~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~  168 (174)
                      +.|||++  |+++.|||++|+.+.   ..++||+|||+|++  ||+++|+||+||+||++|++|+|.|||++|.+||.|.
T Consensus       338 ~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~  414 (705)
T PRK06060        338 VEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVA  414 (705)
T ss_pred             CceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCee
Confidence            9999999  999999999998652   35799999999999  9999999999999999999999999999999999999


Q ss_pred             eEEEeC
Q 030653          169 DAAVIP  174 (174)
Q Consensus       169 ~~~Vvg  174 (174)
                      +++|+|
T Consensus       415 ~a~vv~  420 (705)
T PRK06060        415 EAAVVA  420 (705)
T ss_pred             EEEEEe
Confidence            999875

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.93  E-value=5.4e-26  Score=195.74  Aligned_cols=147  Identities=20%  Similarity=0.257  Sum_probs=127.3

Q ss_pred             cCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-------------ccCCcccccccccCccccc
Q 030653           25 SNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-------------LLPSVVSSSLLIRTLSMWV   91 (174)
Q Consensus        25 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-------------~~~~~~~~~~~~~~~~~~~   91 (174)
                      ...+.+++.+.+.|++++++..+.+.+.+. +.|.+.||.||++.+..             +.|.......+.+++.++.
T Consensus       286 ~~dlssLr~~~SaGEPLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~~~~~~~~~g~~g~p~pG~~~~vvdd~g~~~~~  364 (528)
T COG0365         286 PYDLSSLRVLGSAGEPLNPEAFEWFYSALG-VWILDIYGQTETGMGFIAGRPPVKNGSSGLPLPGYAVRRVDDEGNPVPP  364 (528)
T ss_pred             cccchhheeeeccCCCCCHHHHHHHHHHhC-CCEeccccccccCccccCCCCCcCCCCCCCCCCCceeEEECCCCCcCCC
Confidence            345778999999999999999999999986 99999999999983221             2233334445556777777


Q ss_pred             CCcCeEEe----CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           92 AVLGSKFV----KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        92 ~~~Gel~v----~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      ++ |+|.+    |+++++||+||+++.+++.+. ||.|||.+++  ||++||+||.||+||+.|+||+|.|||++|.+||
T Consensus       365 ~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP  442 (528)
T COG0365         365 GV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHP  442 (528)
T ss_pred             Cc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCc
Confidence            88 99998    699999999999999988434 9999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.||+|||
T Consensus       443 ~VaEaAvVg  451 (528)
T COG0365         443 AVAEAAVVG  451 (528)
T ss_pred             ceeeeEEEe
Confidence            999999997

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=6.4e-26  Score=197.00  Aligned_cols=146  Identities=23%  Similarity=0.305  Sum_probs=125.3

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------CCcccccccccCcccccCC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------PSVVSSSLLIRTLSMWVAV   93 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~   93 (174)
                      +..++.+.++|+.+++...+.+.+.+ ++.+++.||+||++.+....              +.......+..+..++.++
T Consensus       325 ~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~  403 (562)
T PRK05677        325 FSALKLTLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGE  403 (562)
T ss_pred             hhhceEEEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEECCCCCCCCCCC
Confidence            45789999999999999999988876 68999999999986433221              2222222344556777889


Q ss_pred             cCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcce
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVD  169 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~  169 (174)
                      .|||++  |.++.||+++++.+++.|..+|||+|||+|++  ||+++|.||.+|+||++|++|+|.+||++|..||+|.+
T Consensus       404 ~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~  483 (562)
T PRK05677        404 VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQ  483 (562)
T ss_pred             CeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccE
Confidence            999999  99999999999999999977899999999999  99999999999999999999999999999999999999


Q ss_pred             EEEeC
Q 030653          170 AAVIP  174 (174)
Q Consensus       170 ~~Vvg  174 (174)
                      ++|+|
T Consensus       484 ~~v~g  488 (562)
T PRK05677        484 CAAIG  488 (562)
T ss_pred             EEEEe
Confidence            99985

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.93  E-value=2.8e-25  Score=189.62  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=122.9

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-------------------ccCCcccccccccCc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-------------------LLPSVVSSSLLIRTL   87 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-------------------~~~~~~~~~~~~~~~   87 (174)
                      .+..++.+..+++.++..+.+.+.+.+|+..+++.||+||++.+..                   ..++......+..+.
T Consensus       256 ~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~  335 (502)
T TIGR01734       256 NYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGE  335 (502)
T ss_pred             cCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCC
Confidence            3456788899999999999999999999999999999999763221                   111111222233455


Q ss_pred             ccccCCcCeEEe--CcccccccCCcccccccc---cCCCeEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHHHH
Q 030653           88 SMWVAVLGSKFV--KLISAGYVGEQEVTSATL---LPDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEHLL  161 (174)
Q Consensus        88 ~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~---~~~g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l  161 (174)
                      .++.++.|||++  |+++.||+++++.+.+.|   .+.+||+|||+|++ +++|+++||.+|+||++|++|+|.+||++|
T Consensus       336 ~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~~l~i~GR~~d~i~~~G~~v~~~~IE~~l  415 (502)
T TIGR01734       336 PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNL  415 (502)
T ss_pred             CCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECCEEEEeccccCeEEECcEEeCHHHHHHHH
Confidence            667788999999  999999999999888776   23469999999999 779999999999999999999999999999


Q ss_pred             hcCCCcceEEEeC
Q 030653          162 LSHPEMVDAAVIP  174 (174)
Q Consensus       162 ~~~~~V~~~~Vvg  174 (174)
                      .++|.|.+++|++
T Consensus       416 ~~~~~v~~~~vv~  428 (502)
T TIGR01734       416 RQSSYIESAVVVP  428 (502)
T ss_pred             HcCCCccEEEEEE
Confidence            9999999999874

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PLN02654 acetate-CoA ligase

Probab=99.93  E-value=1.5e-25  Score=198.89  Aligned_cols=148  Identities=17%  Similarity=0.160  Sum_probs=123.0

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCC--CeEEcCCCCCcceeee----------------eccCCcccccccccCcc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPT--RRLLLPSVLSSSSTCH----------------SLLPSVVSSSLLIRTLS   88 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~--~~i~~~yg~te~~~~~----------------~~~~~~~~~~~~~~~~~   88 (174)
                      .+..++.+.++|+.++++..+.+.+.++.  ..+.+.||.||++...                .+.+.......+..+.+
T Consensus       395 ~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~  474 (666)
T PLN02654        395 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKE  474 (666)
T ss_pred             ChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCC
Confidence            35678999999999999999999998874  6789999999976322                11222222333445566


Q ss_pred             cccCCcCeEEe----CcccccccCCccccccccc--CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHH
Q 030653           89 MWVAVLGSKFV----KLISAGYVGEQEVTSATLL--PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHL  160 (174)
Q Consensus        89 ~~~~~~Gel~v----~~v~~gY~~~~~~t~~~~~--~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~  160 (174)
                      ++.++.|||++    |++++|||++++.+...+.  .+|||+|||++++  ||+++|+||.||+||++|+||+|.|||++
T Consensus       475 ~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~  554 (666)
T PLN02654        475 IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESA  554 (666)
T ss_pred             CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHH
Confidence            66677899998    6899999999998877652  2799999999999  99999999999999999999999999999


Q ss_pred             HhcCCCcceEEEeC
Q 030653          161 LLSHPEMVDAAVIP  174 (174)
Q Consensus       161 l~~~~~V~~~~Vvg  174 (174)
                      |.+||+|.+++|+|
T Consensus       555 l~~~p~V~eaaVvg  568 (666)
T PLN02654        555 LVSHPQCAEAAVVG  568 (666)
T ss_pred             HHhCCCeeeEEEEe
Confidence            99999999999986

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.93  E-value=6.1e-26  Score=199.26  Aligned_cols=145  Identities=19%  Similarity=0.243  Sum_probs=117.1

Q ss_pred             ccccceEEEccccCChhhHHHHHhhC-----CCCeEEcCCCCCcceeeeecc----------------------------
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTL-----PTRRLLLPSVLSSSSTCHSLL----------------------------   74 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~-----p~~~i~~~yg~te~~~~~~~~----------------------------   74 (174)
                      +..++ +.++++.+++..++.+++.|     |..++++.||+||++......                            
T Consensus       317 l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  395 (612)
T PRK12476        317 LSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADA  395 (612)
T ss_pred             hhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCC
Confidence            45667 89999999999999999987     445799999999986432111                            


Q ss_pred             -------------CCccccccccc-CcccccCCcCeEEe--CcccccccCCccccccccc------------------CC
Q 030653           75 -------------PSVVSSSLLIR-TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL------------------PD  120 (174)
Q Consensus        75 -------------~~~~~~~~~~~-~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~------------------~~  120 (174)
                                   +.....+.+.+ +.+++.++.|||++  |+++.|||++|+.|++.|.                  .+
T Consensus       396 ~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~  475 (612)
T PRK12476        396 PNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDG  475 (612)
T ss_pred             CCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCC
Confidence                         11111112334 56778899999999  9999999999999988873                  13


Q ss_pred             CeEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHHHHhc-CCCcce--EEEe
Q 030653          121 GWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLS-HPEMVD--AAVI  173 (174)
Q Consensus       121 g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~-~~~V~~--~~Vv  173 (174)
                      +||+|||+|++ ||+|+|+||+||+||++|++|+|.|||++|.+ ||.|.+  ++|+
T Consensus       476 ~w~~TGDlg~~~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~  532 (612)
T PRK12476        476 TWLRTGDLGVYLDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAF  532 (612)
T ss_pred             CeeeccccceeECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEE
Confidence            59999999999 99999999999999999999999999999985 899998  5544

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.93  E-value=1.4e-25  Score=211.90  Aligned_cols=147  Identities=18%  Similarity=0.204  Sum_probs=122.4

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---CC----------------------ccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---PS----------------------VVSSS   81 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---~~----------------------~~~~~   81 (174)
                      .+..++.+..+|+.+++...+++.+.+|++++++.||+||++.+....   ..                      .....
T Consensus       527 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i  606 (1389)
T TIGR03443       527 PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLV  606 (1389)
T ss_pred             cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEE
Confidence            456789999999999999999999999999999999999986433211   00                      00011


Q ss_pred             ccc--cCcccccCCcCeEEe--CcccccccCCccccccccc----------------------------CCCeEecCCee
Q 030653           82 LLI--RTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL----------------------------PDGWMRTGDLC  129 (174)
Q Consensus        82 ~~~--~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~----------------------------~~g~~~TGD~g  129 (174)
                      .+.  ....++.|+.|||++  |++++||+++|+.|+++|.                            .++||+|||+|
T Consensus       607 vd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg  686 (1389)
T TIGR03443       607 VNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLG  686 (1389)
T ss_pred             ECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCce
Confidence            111  124567789999999  9999999999999998873                            25799999999


Q ss_pred             ee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEe
Q 030653          130 YE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI  173 (174)
Q Consensus       130 ~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vv  173 (174)
                      ++  ||+|+|+||.||+||++|+||+|.|||++|.+||.|.+++|+
T Consensus       687 ~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~  732 (1389)
T TIGR03443       687 RYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTL  732 (1389)
T ss_pred             eEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEE
Confidence            99  999999999999999999999999999999999999999876

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.93  E-value=1.4e-25  Score=193.65  Aligned_cols=142  Identities=18%  Similarity=0.266  Sum_probs=113.6

Q ss_pred             ccccceEEEccccCChhhHHHHHhhC-----CCCeEEcCCCCCcceeeeecc----------------------------
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTL-----PTRRLLLPSVLSSSSTCHSLL----------------------------   74 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~-----p~~~i~~~yg~te~~~~~~~~----------------------------   74 (174)
                      +..++.+.++|++++++..+.+.+.+     |..++++.||+||++.+....                            
T Consensus       271 l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p  350 (525)
T PRK05851        271 LGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNP  350 (525)
T ss_pred             HHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCC
Confidence            56789999999999999999988752     445799999999986433211                            


Q ss_pred             -CCcccccccccC-cccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee-CCeEEEEeccCCeEEECc
Q 030653           75 -PSVVSSSLLIRT-LSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKG  149 (174)
Q Consensus        75 -~~~~~~~~~~~~-~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G  149 (174)
                       +.......+.++ ..++.++.|||++  |+++.|||++++.+     .++||+|||+|++ ||+|+|+||+||+||++|
T Consensus       351 ~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~~G~l~~~GR~dd~i~~~G  425 (525)
T PRK05851        351 IPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLVDGGLVVCGRAKELITVAG  425 (525)
T ss_pred             CCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEECCEEEEEeecCCEEEECC
Confidence             111111112222 2356678999999  99999999998642     4789999999999 999999999999999999


Q ss_pred             EEeChHHHHHHHhcCCCcceEEEeC
Q 030653          150 CQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       150 ~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      +||+|.|||++|.+||+|.+|+|++
T Consensus       426 ~~v~p~eIE~~l~~~p~V~~~~vv~  450 (525)
T PRK05851        426 RNIFPTEIERVAAQVRGVREGAVVA  450 (525)
T ss_pred             EEeCHHHHHHHHHhCCCcccceEEE
Confidence            9999999999999999999998874

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.93  E-value=2.2e-25  Score=196.37  Aligned_cols=148  Identities=16%  Similarity=0.164  Sum_probs=122.8

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCC--CeEEcCCCCCcceeeee----------------ccCCcccccccccCcc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPT--RRLLLPSVLSSSSTCHS----------------LLPSVVSSSLLIRTLS   88 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~--~~i~~~yg~te~~~~~~----------------~~~~~~~~~~~~~~~~   88 (174)
                      .+..++.+.++|+.++++..+.+.+.++.  ..+++.||+||++.+..                +.+.......+..+..
T Consensus       365 ~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~  444 (637)
T PRK00174        365 DLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNP  444 (637)
T ss_pred             CccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCC
Confidence            34678899999999999999999988863  78999999999864321                1122222233445566


Q ss_pred             cccCCcCeEEe----CcccccccCCcccccccc--cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHH
Q 030653           89 MWVAVLGSKFV----KLISAGYVGEQEVTSATL--LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHL  160 (174)
Q Consensus        89 ~~~~~~Gel~v----~~v~~gY~~~~~~t~~~~--~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~  160 (174)
                      ++.++.|||++    |++++|||++++.+...+  ..+|||+|||++++  ||+++|+||+||+||++|++|+|.|||++
T Consensus       445 ~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~  524 (637)
T PRK00174        445 LEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA  524 (637)
T ss_pred             CCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHH
Confidence            77789999998    489999999998877665  24789999999999  99999999999999999999999999999


Q ss_pred             HhcCCCcceEEEeC
Q 030653          161 LLSHPEMVDAAVIP  174 (174)
Q Consensus       161 l~~~~~V~~~~Vvg  174 (174)
                      |.+||+|.+|+|+|
T Consensus       525 l~~~~~V~~~~Vvg  538 (637)
T PRK00174        525 LVAHPKVAEAAVVG  538 (637)
T ss_pred             HHhCCCcceEEEEe
Confidence            99999999999985

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.93  E-value=2.7e-25  Score=195.35  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=122.5

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCC--CCeEEcCCCCCcceeeee----------------ccCCcccccccccCcc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLP--TRRLLLPSVLSSSSTCHS----------------LLPSVVSSSLLIRTLS   88 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p--~~~i~~~yg~te~~~~~~----------------~~~~~~~~~~~~~~~~   88 (174)
                      .+..++.+.++|+.++++..+.+.+.++  ++.+++.||+||++.+..                +.+.......+..+..
T Consensus       356 ~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~  435 (625)
T TIGR02188       356 DLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNP  435 (625)
T ss_pred             CccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCC
Confidence            4567899999999999999999999886  478999999999864321                1112222223444556


Q ss_pred             cc-cCCcCeEEe----CcccccccCCccccccccc--CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           89 MW-VAVLGSKFV----KLISAGYVGEQEVTSATLL--PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        89 ~~-~~~~Gel~v----~~v~~gY~~~~~~t~~~~~--~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      ++ .++.|||++    |++++|||++++.+...+.  .+|||+|||++++  ||+++|+||+||+||++|++|+|.|||+
T Consensus       436 ~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~  515 (625)
T TIGR02188       436 VEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIES  515 (625)
T ss_pred             CCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHH
Confidence            66 788999998    5899999999988877663  3789999999999  9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      +|.+||.|.+|+|+|
T Consensus       516 ~l~~~p~V~e~~vvg  530 (625)
T TIGR02188       516 ALVSHPAVAEAAVVG  530 (625)
T ss_pred             HHHhCCCcceEEEEe
Confidence            999999999999985

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.8e-25  Score=190.50  Aligned_cols=146  Identities=25%  Similarity=0.332  Sum_probs=122.2

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-----------------ccCCcccccccccCccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-----------------LLPSVVSSSLLIRTLSM   89 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-----------------~~~~~~~~~~~~~~~~~   89 (174)
                      .+..++.+.++|...+...++.+.+.  +..+++.||+||++.+..                 +.+.......+..+..+
T Consensus       250 ~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~  327 (488)
T PRK09088        250 ALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDC  327 (488)
T ss_pred             ccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCC
Confidence            45678999999999999888887764  688999999999864321                 11122222223345566


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.+..|||++  |+++.||+++++.++..++.+|||+|||+|++  ||++++.||.+|+||.+|++|+|.+||++|..+|
T Consensus       328 ~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~  407 (488)
T PRK09088        328 PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHP  407 (488)
T ss_pred             cCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCC
Confidence            7788999999  99999999999999888877899999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+++|+|
T Consensus       408 ~v~~~~v~~  416 (488)
T PRK09088        408 GIRECAVVG  416 (488)
T ss_pred             CcceEEEEe
Confidence            999999985

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.4e-25  Score=191.31  Aligned_cols=147  Identities=22%  Similarity=0.304  Sum_probs=124.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec----------------cCCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL----------------LPSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~----------------~~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.++|+.++...++.+.+.+++..+++.||+||++.....                .+.......+..+..++
T Consensus       262 ~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~  341 (497)
T PRK06145        262 DLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLP  341 (497)
T ss_pred             ccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCC
Confidence            34568899999999999999999999999999999999998753211                11111122233444566


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .+..|||++  +.++.||+++++.++..| .++||+|||++++  ||+++++||.||+||++|++|+|.+||++|..+|+
T Consensus       342 ~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~  420 (497)
T PRK06145        342 PNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPE  420 (497)
T ss_pred             CCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCC
Confidence            688999999  999999999999998888 5899999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|++
T Consensus       421 v~~~~v~~  428 (497)
T PRK06145        421 VAEAAVIG  428 (497)
T ss_pred             eeEEEEEe
Confidence            99999875

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.92  E-value=2.6e-25  Score=192.44  Aligned_cols=145  Identities=34%  Similarity=0.470  Sum_probs=123.1

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-------------------cCCccccccc-ccCccc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-------------------LPSVVSSSLL-IRTLSM   89 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-------------------~~~~~~~~~~-~~~~~~   89 (174)
                      .++.+.++|+.+++...+.+++.||+..+++.||+||++.+...                   .+.......+ ..+..+
T Consensus       304 ~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~  383 (546)
T PLN02330        304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL  383 (546)
T ss_pred             eeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC
Confidence            35788999999999999999999999999999999998643211                   1111111122 234466


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.++.|||++  |.++.||+++++.+++.++.+|||+|||++++  ||+++++||.+|+||++|++|+|.+||++|.+++
T Consensus       384 p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  463 (546)
T PLN02330        384 PKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHP  463 (546)
T ss_pred             CCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCC
Confidence            7788999999  89999999999999888877899999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+++|+|
T Consensus       464 ~v~~~~v~~  472 (546)
T PLN02330        464 SVEDAAVVP  472 (546)
T ss_pred             chheEEEEe
Confidence            999999985

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.92  E-value=5.9e-25  Score=187.41  Aligned_cols=144  Identities=23%  Similarity=0.332  Sum_probs=121.5

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccccCcccccCCc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLIRTLSMWVAVL   94 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~   94 (174)
                      ....++++|..++....+++++.+|+.++++.||+||++......               +.......+..+..++.++.
T Consensus       254 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~  333 (487)
T PRK07638        254 NKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEI  333 (487)
T ss_pred             ceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCC
Confidence            345677888889999999999999999999999999987543322               22222223345667778899


Q ss_pred             CeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceE
Q 030653           95 GSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDA  170 (174)
Q Consensus        95 Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~  170 (174)
                      |||++  |.++.||+++++.+...+ .+|||+|||++++  ||+++++||++|+||++|++|+|.+||++|.++|+|.++
T Consensus       334 Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~  412 (487)
T PRK07638        334 GTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEI  412 (487)
T ss_pred             eEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeE
Confidence            99999  999999999998766654 6899999999999  999999999999999999999999999999999999999


Q ss_pred             EEeC
Q 030653          171 AVIP  174 (174)
Q Consensus       171 ~Vvg  174 (174)
                      +|+|
T Consensus       413 ~v~~  416 (487)
T PRK07638        413 VVIG  416 (487)
T ss_pred             EEEe
Confidence            9985

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.92  E-value=4.6e-25  Score=191.65  Aligned_cols=147  Identities=22%  Similarity=0.304  Sum_probs=124.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLIRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~~~~~~~~   91 (174)
                      .+..++.+.++++.+++.+.+.+.+.+ ++++++.||+||++.+....               +.......+..+..++.
T Consensus       331 ~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~  409 (562)
T PRK12492        331 DFSALKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPL  409 (562)
T ss_pred             cccceeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCC
Confidence            356788999999999999999998865 68999999999986543321               11112223344556677


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      ++.|||++  +.++.|||++++.+.+.|..++||+|||+|++  +|+++|.||.||+||++|++|+|.+||++|.+||.|
T Consensus       410 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v  489 (562)
T PRK12492        410 GERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKV  489 (562)
T ss_pred             CCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCe
Confidence            88999999  89999999999999888877899999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+++|+|
T Consensus       490 ~~~~v~~  496 (562)
T PRK12492        490 ANCAAIG  496 (562)
T ss_pred             eEEEEEe
Confidence            9999875

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=1.3e-25  Score=200.36  Aligned_cols=139  Identities=20%  Similarity=0.222  Sum_probs=112.5

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec--------------cCCcccccccccCc--ccccC
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL--------------LPSVVSSSLLIRTL--SMWVA   92 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~   92 (174)
                      ..++.+.+||++++++..+.++..+.  .+++.||+||++.+...              .+.......+.++.  ....+
T Consensus       428 ~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~  505 (700)
T PTZ00216        428 GRVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPE  505 (700)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHhh--hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCC
Confidence            35789999999999999887776664  89999999998643222              12222222222111  12234


Q ss_pred             CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEE-ECcEEeChHHHHHHHhcCCCc
Q 030653           93 VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVK-YKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        93 ~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~-~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      ..|||++  |+++.|||++|+.|+++|+.+|||+|||+|++  ||+|+|+||+||+|| .+|++|+|++||++|.+||.|
T Consensus       506 ~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V  585 (700)
T PTZ00216        506 PRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELV  585 (700)
T ss_pred             CCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCc
Confidence            5799999  99999999999999999988999999999999  999999999999999 799999999999999999999


Q ss_pred             ce
Q 030653          168 VD  169 (174)
Q Consensus       168 ~~  169 (174)
                      .+
T Consensus       586 ~~  587 (700)
T PTZ00216        586 VP  587 (700)
T ss_pred             cc
Confidence            96

>PRK07529 AMP-binding domain protein; Validated

Probab=99.92  E-value=7.6e-25  Score=193.20  Aligned_cols=146  Identities=22%  Similarity=0.286  Sum_probs=120.9

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC---------------Ccccccc--cccC---
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP---------------SVVSSSL--LIRT---   86 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~---------------~~~~~~~--~~~~---   86 (174)
                      .+..++.+.+|++.++++..+++++.+ ++++++.||+||++.+....+               .......  +..+   
T Consensus       331 ~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~  409 (632)
T PRK07529        331 DISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYL  409 (632)
T ss_pred             CccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCccc
Confidence            456789999999999999999999877 689999999999875433222               1111111  2223   


Q ss_pred             cccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHh
Q 030653           87 LSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLL  162 (174)
Q Consensus        87 ~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~  162 (174)
                      .+++.++.|||++  |+++.||++++ .+...+..+|||+|||+|++  ||+++|.||.||+||++|++|+|.+||++|.
T Consensus       410 ~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~  488 (632)
T PRK07529        410 RDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALL  488 (632)
T ss_pred             ccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHH
Confidence            4567789999999  99999999865 45566657899999999999  9999999999999999999999999999999


Q ss_pred             cCCCcceEEEeC
Q 030653          163 SHPEMVDAAVIP  174 (174)
Q Consensus       163 ~~~~V~~~~Vvg  174 (174)
                      +||+|.+|+|+|
T Consensus       489 ~~p~V~~a~vvg  500 (632)
T PRK07529        489 RHPAVALAAAVG  500 (632)
T ss_pred             hCCCeeEEEEEe
Confidence            999999999985

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.92  E-value=4.6e-25  Score=190.06  Aligned_cols=147  Identities=20%  Similarity=0.263  Sum_probs=123.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---------------c-CCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---------------L-PSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---------------~-~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.+||+.++..+.+.+.+.+ ++.+++.||+||+..+...               . +.......+..+..++
T Consensus       297 ~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~  375 (527)
T TIGR02275       297 DLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVA  375 (527)
T ss_pred             CccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCC
Confidence            345688999999999999999998877 5899999999996532211               1 0111112233445567


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  +.++.||+++++.+...++.+|||+|||++++  ||++++.||.+|+||++|++|+|.+||++|.+||+
T Consensus       376 ~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~  455 (527)
T TIGR02275       376 PGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPA  455 (527)
T ss_pred             CCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCC
Confidence            789999999  99999999999999888888999999999999  89999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|+|
T Consensus       456 v~~~~v~~  463 (527)
T TIGR02275       456 VHDAALVS  463 (527)
T ss_pred             ceEEEEEe
Confidence            99999985

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.92  E-value=4.8e-25  Score=195.59  Aligned_cols=144  Identities=21%  Similarity=0.191  Sum_probs=114.2

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc-CC--------------ccccccccc--C-cccc
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL-PS--------------VVSSSLLIR--T-LSMW   90 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~-~~--------------~~~~~~~~~--~-~~~~   90 (174)
                      ..++.+.+||.+++++..+ +.+.+++..+++.||+||++...... +.              ......+..  + ...+
T Consensus       383 ~~lr~~~~gga~l~~~~~~-~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~  461 (660)
T PLN02430        383 GRLRLLISGGAPLSTEIEE-FLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLG  461 (660)
T ss_pred             CeEEEEEECCCCCCHHHHH-HHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCC
Confidence            4678999999999998754 45566667899999999986432221 11              111111100  1 1223


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~  165 (174)
                      .+..|||++  |+++.|||++|+.|++.| .+|||+|||+|++  ||+|+|+||++|+||+ +|++|+|.+||++|.+||
T Consensus       462 ~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p  540 (660)
T PLN02430        462 EPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP  540 (660)
T ss_pred             CCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCC
Confidence            345799999  999999999999999988 6999999999999  9999999999999997 799999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+|+|+|
T Consensus       541 ~V~~~~V~G  549 (660)
T PLN02430        541 IVEDIWVYG  549 (660)
T ss_pred             CeeEEEEEe
Confidence            999999986

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.92  E-value=1.1e-24  Score=188.48  Aligned_cols=146  Identities=17%  Similarity=0.229  Sum_probs=122.8

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC----------------CcccccccccCccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP----------------SVVSSSLLIRTLSM   89 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~----------------~~~~~~~~~~~~~~   89 (174)
                      ..+..++.+.++|+.+++.+.+.+.+.+ ++.+++.||+||++.+....+                .......+.++.++
T Consensus       309 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~  387 (547)
T PRK13295        309 RPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPL  387 (547)
T ss_pred             CCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCC
Confidence            3455689999999999999999999988 789999999999865433221                11111223345566


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.++.|||++  +.++.||+++++.++..  .+|||+|||++++  ||++++.||.+|+||++|++|+|.+||++|.+++
T Consensus       388 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~  465 (547)
T PRK13295        388 PAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHP  465 (547)
T ss_pred             CCCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCC
Confidence            7789999999  99999999999988766  4789999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      +|.+++|+|
T Consensus       466 ~v~~~~v~~  474 (547)
T PRK13295        466 AIAQVAIVA  474 (547)
T ss_pred             CeeeEEEEe
Confidence            999999975

>PRK12467 peptide synthase; Provisional

Probab=99.92  E-value=5.8e-25  Score=222.18  Aligned_cols=148  Identities=20%  Similarity=0.227  Sum_probs=126.5

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-------------------cCCcccccccccCc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-------------------LPSVVSSSLLIRTL   87 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-------------------~~~~~~~~~~~~~~   87 (174)
                      .+..++.+.+||+.+++++++++.+.+|++++++.||.||++.....                   .++....+.+..+.
T Consensus      3349 ~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~ 3428 (3956)
T PRK12467       3349 DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLN 3428 (3956)
T ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCC
Confidence            45668999999999999999999999999999999999998743221                   11111122244556


Q ss_pred             ccccCCcCeEEe--CcccccccCCcccccccccCC-------CeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           88 SMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPD-------GWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        88 ~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~-------g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      .++.|+.|||++  |++++||+++|+.|+++|..+       +||+|||+|++  ||+|+|+||+||+||++|+||+|.|
T Consensus      3429 ~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~E 3508 (3956)
T PRK12467       3429 PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGE 3508 (3956)
T ss_pred             CCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHH
Confidence            778899999999  999999999999999998544       47999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|.++|+|.+|+|++
T Consensus      3509 IE~~l~~~p~V~~a~v~~ 3526 (3956)
T PRK12467       3509 IEARLLQHPSVREAVVLA 3526 (3956)
T ss_pred             HHHHHhhCcccceEEEEE
Confidence            999999999999999874

>PRK12316 peptide synthase; Provisional

Probab=99.92  E-value=7.5e-25  Score=224.29  Aligned_cols=148  Identities=22%  Similarity=0.272  Sum_probs=126.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceee---e-------------eccCCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTC---H-------------SLLPSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~---~-------------~~~~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.+||+.++++.++.+.+.+|+.++++.||.||++..   .             .+.++....+.+..+..++
T Consensus       768 ~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p  847 (5163)
T PRK12316        768 SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVP  847 (5163)
T ss_pred             cCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCC
Confidence            45578899999999999999999999999999999999998721   1             1112222222344556778


Q ss_pred             cCCcCeEEe--CcccccccCCccccccccc------CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHH
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLL------PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHL  160 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~------~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~  160 (174)
                      .|+.|||++  |++++||+++|+.|+++|.      .++||+|||+|++  ||+|+|+||+||+||++|+||+|.|||++
T Consensus       848 ~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~  927 (5163)
T PRK12316        848 VGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEAR  927 (5163)
T ss_pred             CCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHH
Confidence            899999999  9999999999999999883      3469999999999  99999999999999999999999999999


Q ss_pred             HhcCCCcceEEEeC
Q 030653          161 LLSHPEMVDAAVIP  174 (174)
Q Consensus       161 l~~~~~V~~~~Vvg  174 (174)
                      |.+||.|.+|+|++
T Consensus       928 l~~~p~V~~a~V~~  941 (5163)
T PRK12316        928 LLEHPWVREAAVLA  941 (5163)
T ss_pred             HHhCCCcceEEEEE
Confidence            99999999999975

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.92  E-value=1.9e-24  Score=185.65  Aligned_cols=147  Identities=8%  Similarity=0.012  Sum_probs=110.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCC-CCeEEcCCCCCcceeeee---------------ccCCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLP-TRRLLLPSVLSSSSTCHS---------------LLPSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p-~~~i~~~yg~te~~~~~~---------------~~~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.++|+.+++..++.+++.++ +..+++.||+||++....               +.+.......+..+.+++
T Consensus       234 ~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~  313 (499)
T PLN03051        234 DWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYP  313 (499)
T ss_pred             CchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCC
Confidence            3467899999999999998887776442 478999999999753211               111111222344455666


Q ss_pred             cC--CcCeEEe--Ccc--cccccCCcccccccccC--------CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeCh
Q 030653           91 VA--VLGSKFV--KLI--SAGYVGEQEVTSATLLP--------DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAP  154 (174)
Q Consensus        91 ~~--~~Gel~v--~~v--~~gY~~~~~~t~~~~~~--------~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p  154 (174)
                      .+  +.|||++  |.+  +.|||+++ .++..++.        .+||+|||+|++  ||+|+|+||+||+||++|+||+|
T Consensus       314 ~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p  392 (499)
T PLN03051        314 DDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSS  392 (499)
T ss_pred             CCCCcceEEEEecCcCCCCccccCCc-ccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCH
Confidence            65  5799999  655  68999765 33322321        127999999999  99999999999999999999999


Q ss_pred             HHHHHHHhc-CCCcceEEEeC
Q 030653          155 AELEHLLLS-HPEMVDAAVIP  174 (174)
Q Consensus       155 ~eVE~~l~~-~~~V~~~~Vvg  174 (174)
                      .|||++|.+ ||+|.+|+|+|
T Consensus       393 ~EIE~~l~~~~p~V~~aavvg  413 (499)
T PLN03051        393 VEIERACDRAVAGIAETAAVG  413 (499)
T ss_pred             HHHHHHHHhcCCCcceEEEEE
Confidence            999999996 99999999985

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.92  E-value=1e-24  Score=185.67  Aligned_cols=146  Identities=18%  Similarity=0.215  Sum_probs=123.1

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec----------------cCCcccccccccCccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL----------------LPSVVSSSLLIRTLSM   89 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~----------------~~~~~~~~~~~~~~~~   89 (174)
                      ..+..++.+.++|+.++...++.+++.  +..+++.||+||++.+...                .+.......+..+..+
T Consensus       261 ~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~  338 (496)
T PRK06839        261 TNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKV  338 (496)
T ss_pred             CCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCC
Confidence            345678899999999999999999885  7889999999998743321                1122222234455567


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.++.|||++  +.++.||+++++.+...+ .+|||+|||++++  ||++++.||.+|+||.+|++|+|.+||++|..+|
T Consensus       339 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~  417 (496)
T PRK06839        339 EVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLS  417 (496)
T ss_pred             CCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCC
Confidence            7889999999  999999999999888777 5899999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      +|.+++|+|
T Consensus       418 ~v~~~~v~~  426 (496)
T PRK06839        418 DVYEVAVVG  426 (496)
T ss_pred             CeeEEEEEe
Confidence            999999975

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.92  E-value=2.4e-24  Score=186.42  Aligned_cols=142  Identities=24%  Similarity=0.248  Sum_probs=118.4

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee---------------ccCCcccccccccCcccccC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS---------------LLPSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~---------------~~~~~~~~~~~~~~~~~~~~   92 (174)
                      +..++.+.++|+.++++..+.+.+.++ ..+++.||+||++.+..               +.+.......+..+..++.+
T Consensus       322 ~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g  400 (549)
T PRK07788        322 TSSLKIIFVSGSALSPELATRALEAFG-PVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRG  400 (549)
T ss_pred             CCceeEEEEeCCCCCHHHHHHHHHHhC-ccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCC
Confidence            557889999999999999999999886 57999999999863322               12222222234455566778


Q ss_pred             CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcc
Q 030653           93 VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMV  168 (174)
Q Consensus        93 ~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~  168 (174)
                      +.|||++  +.++.||++++..  . . .+|||+|||++++  ||+++|.||.||+||++|++|+|.+||++|.+||.|.
T Consensus       401 ~~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~  476 (549)
T PRK07788        401 VVGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVV  476 (549)
T ss_pred             CeEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCee
Confidence            9999999  9999999998865  2 2 4799999999999  9999999999999999999999999999999999999


Q ss_pred             eEEEeC
Q 030653          169 DAAVIP  174 (174)
Q Consensus       169 ~~~Vvg  174 (174)
                      +++|+|
T Consensus       477 ~~~v~~  482 (549)
T PRK07788        477 EAAVIG  482 (549)
T ss_pred             EEEEEC
Confidence            999985

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.92  E-value=1.3e-24  Score=187.55  Aligned_cols=145  Identities=23%  Similarity=0.355  Sum_probs=122.9

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---------------------cCCcccccccccC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---------------------LPSVVSSSLLIRT   86 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---------------------~~~~~~~~~~~~~   86 (174)
                      ...++.+.++++.+++.+.+.+.+.+ +.++++.||+||++.+...                     .+.......+.++
T Consensus       294 ~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g  372 (534)
T PRK05852        294 PAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDG  372 (534)
T ss_pred             CCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCC
Confidence            45688899999999999999999887 5789999999998643221                     1111112224455


Q ss_pred             cccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHh
Q 030653           87 LSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLL  162 (174)
Q Consensus        87 ~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~  162 (174)
                      ..++.++.|||++  +.+++||+++++.+++.| .++||+|||++++  ||++++.||++|+||++|.+|+|.+||++|.
T Consensus       373 ~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~  451 (534)
T PRK05852        373 LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLA  451 (534)
T ss_pred             CCCCCCCceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHH
Confidence            6777889999998  999999999999998888 5899999999999  9999999999999999999999999999999


Q ss_pred             cCCCcceEEEeC
Q 030653          163 SHPEMVDAAVIP  174 (174)
Q Consensus       163 ~~~~V~~~~Vvg  174 (174)
                      .+|+|.+|+|+|
T Consensus       452 ~~~~V~~~~v~g  463 (534)
T PRK05852        452 SHPNVMEAAVFG  463 (534)
T ss_pred             hCCCeeeEEEEe
Confidence            999999999986

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.92  E-value=2.2e-24  Score=183.79  Aligned_cols=150  Identities=16%  Similarity=0.192  Sum_probs=124.9

Q ss_pred             cCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-------------------cCCccccccccc
Q 030653           25 SNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-------------------LPSVVSSSLLIR   85 (174)
Q Consensus        25 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-------------------~~~~~~~~~~~~   85 (174)
                      ...+..++.+..+|+.+++.+.+.+.+.+++..+++.||+||++.+...                   .+.......+..
T Consensus       256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~  335 (503)
T PRK04813        256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEE  335 (503)
T ss_pred             cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCC
Confidence            3455678999999999999999999999999999999999998643211                   111111122334


Q ss_pred             CcccccCCcCeEEe--CcccccccCCccccccccc---CCCeEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           86 TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL---PDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        86 ~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~---~~g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      +..++.++.|||++  +.++.||+++++.+...|.   ..+||+|||++++ ||++++.||.+|+||++|++|+|.+||+
T Consensus       336 ~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~  415 (503)
T PRK04813        336 GTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGRIDFQIKLNGYRIELEEIEQ  415 (503)
T ss_pred             CCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEeeCCeEEEeccccceEEECcEEeCHHHHHH
Confidence            55666788999999  9999999999998888762   2359999999999 9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      ++..+|+|.+++|+|
T Consensus       416 ~l~~~~~v~~~~v~~  430 (503)
T PRK04813        416 NLRQSSYVESAVVVP  430 (503)
T ss_pred             HHHhCCCcceEEEEE
Confidence            999999999999874

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.92  E-value=1.5e-24  Score=188.73  Aligned_cols=146  Identities=17%  Similarity=0.214  Sum_probs=122.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLIRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~~~~~~~~   91 (174)
                      .+..++.+.++|+.+++..++.+++.+. ..+++.||+||++.+....               +.......+..+..++.
T Consensus       321 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~  399 (570)
T PRK04319        321 DLSSLRHILSVGEPLNPEVVRWGMKVFG-LPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPP  399 (570)
T ss_pred             CcccceEEEEcccCCCHHHHHHHHHHhC-CCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCC
Confidence            3567899999999999999999888764 7899999999987433211               11112222444556677


Q ss_pred             CCcCeEEe----CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           92 AVLGSKFV----KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        92 ~~~Gel~v----~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      ++.|||++    |+++.|||++++.+++.|. +|||+|||++++  ||+++++||++|+||++|++|+|.+||++|.+||
T Consensus       400 g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~  478 (570)
T PRK04319        400 NRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHP  478 (570)
T ss_pred             CCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCC
Confidence            89999998    6899999999999988884 899999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+++|+|
T Consensus       479 ~V~~~~v~g  487 (570)
T PRK04319        479 AVAEAGVIG  487 (570)
T ss_pred             Ceeecceec
Confidence            999999875

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.92  E-value=2.4e-24  Score=190.43  Aligned_cols=147  Identities=14%  Similarity=0.105  Sum_probs=118.9

Q ss_pred             CccccceEEEccccCChhhHHHHHhhC-CCCeEEcCCCCCcceeee---------------eccCCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTL-PTRRLLLPSVLSSSSTCH---------------SLLPSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~-p~~~i~~~yg~te~~~~~---------------~~~~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.++|+.++++..+.+.+.+ +++.+++.||.||++.+.               .+.+.......+..+..+ 
T Consensus       381 ~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-  459 (655)
T PRK03584        381 DLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-  459 (655)
T ss_pred             ChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-
Confidence            456799999999999999999999988 578999999999974321               111222222334444555 


Q ss_pred             cCCcCeEEe----CcccccccCCccccc--ccc--cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHH
Q 030653           91 VAVLGSKFV----KLISAGYVGEQEVTS--ATL--LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHL  160 (174)
Q Consensus        91 ~~~~Gel~v----~~v~~gY~~~~~~t~--~~~--~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~  160 (174)
                      .++.|||++    |+++.|||++++.++  ..+  ..++||+|||+|++  ||+++|+||.||+||++|++|+|.|||++
T Consensus       460 ~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~  539 (655)
T PRK03584        460 VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQ  539 (655)
T ss_pred             CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHH
Confidence            678999998    479999999998543  222  12689999999999  99999999999999999999999999999


Q ss_pred             HhcCCCcceEEEeC
Q 030653          161 LLSHPEMVDAAVIP  174 (174)
Q Consensus       161 l~~~~~V~~~~Vvg  174 (174)
                      |.+||.|.+|+|+|
T Consensus       540 l~~~p~V~ea~vvg  553 (655)
T PRK03584        540 VEALPEVLDSLVIG  553 (655)
T ss_pred             HHhCCCcceEEEEe
Confidence            99999999999986

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=1.8e-24  Score=186.91  Aligned_cols=148  Identities=20%  Similarity=0.299  Sum_probs=126.8

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc-----------------CCcccccccccCccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL-----------------PSVVSSSLLIRTLSM   89 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~-----------------~~~~~~~~~~~~~~~   89 (174)
                      .+..++.+.++|+.+++...+.+.+.++...+++.||+||++.+....                 +.......+..+..+
T Consensus       315 ~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~  394 (558)
T PRK12583        315 DLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATV  394 (558)
T ss_pred             CchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCC
Confidence            456789999999999999999999999988999999999997554321                 121222223345567


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.+..|||++  +.++.||+++++.+...+..++||+|||++++  ||++++.||.+|+||++|++|+|.+||++|..+|
T Consensus       395 ~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~  474 (558)
T PRK12583        395 PRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHP  474 (558)
T ss_pred             CCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCC
Confidence            7788999998  99999999999988887767899999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+++|+|
T Consensus       475 ~v~~~~v~~  483 (558)
T PRK12583        475 AVADVQVFG  483 (558)
T ss_pred             CeeEEEEEe
Confidence            999999975

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.91  E-value=1.6e-24  Score=185.42  Aligned_cols=147  Identities=22%  Similarity=0.303  Sum_probs=126.0

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------CCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.++++.++....+.+++.+++..+++.||+||++.+....                +.......+..+..++
T Consensus       284 ~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~  363 (523)
T PRK08316        284 DLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVA  363 (523)
T ss_pred             CcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCC
Confidence            345788999999999999999999999999999999999987544321                1111222234455677


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.||+++  +.++.||+++++.++..| .++||+|||+|++  ||+++++||.||+||++|++|+|.+||++|.++++
T Consensus       364 ~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~  442 (523)
T PRK08316        364 PGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPA  442 (523)
T ss_pred             CCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCC
Confidence            789999998  999999999999888888 6899999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|+|
T Consensus       443 v~~~~v~~  450 (523)
T PRK08316        443 VAEVAVIG  450 (523)
T ss_pred             hheEeEec
Confidence            99999875

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.91  E-value=3.5e-24  Score=188.74  Aligned_cols=147  Identities=14%  Similarity=0.069  Sum_probs=119.2

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee-e-----------------ccCCcccccccc-cCc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH-S-----------------LLPSVVSSSLLI-RTL   87 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~-~-----------------~~~~~~~~~~~~-~~~   87 (174)
                      .+..++.+.++|+.++++..+.+++.++ ..+++.||+||++... .                 +.+.......+. .+.
T Consensus       352 ~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~  430 (628)
T TIGR02316       352 DLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGR  430 (628)
T ss_pred             CccceeEEEEecCCCCHHHHHHHHHHhC-CCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCC
Confidence            4567899999999999999988888774 6799999999986321 1                 111111222232 355


Q ss_pred             ccccCCcCeEEe--C---cccccccCCcccccccc---cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHH
Q 030653           88 SMWVAVLGSKFV--K---LISAGYVGEQEVTSATL---LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAEL  157 (174)
Q Consensus        88 ~~~~~~~Gel~v--~---~v~~gY~~~~~~t~~~~---~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eV  157 (174)
                      .++.++.|||++  |   +.+.+||++++.+...+   ..++||+|||+|++  ||+|+|+||.||+||++|+||+|.||
T Consensus       431 ~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eI  510 (628)
T TIGR02316       431 PCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREI  510 (628)
T ss_pred             CCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHH
Confidence            677789999998  4   67899999998776654   24679999999999  99999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEeC
Q 030653          158 EHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       158 E~~l~~~~~V~~~~Vvg  174 (174)
                      |++|.+||+|.+|+|+|
T Consensus       511 E~~l~~~p~V~ea~Vvg  527 (628)
T TIGR02316       511 EESVSSHPSVAEVAVVG  527 (628)
T ss_pred             HHHHHhCCCcceEEEEe
Confidence            99999999999999986

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.91  E-value=2.1e-24  Score=187.05  Aligned_cols=147  Identities=19%  Similarity=0.279  Sum_probs=123.9

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCC---------------cccccccccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPS---------------VVSSSLLIRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~---------------~~~~~~~~~~~~~~~   91 (174)
                      .+..++.+.++++.++..+.+.+++.+ ++.+++.||+||++.+....+.               ......+..+..++.
T Consensus       327 ~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~  405 (560)
T PRK08751        327 DFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAI  405 (560)
T ss_pred             chhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCC
Confidence            345789999999999999999998866 6789999999998754432211               111122334556777


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      +..|||++  +.+++||+++++.+.+.+..+|||+|||++++  ||++++.||.+|+||++|++|+|.+||++|..++.|
T Consensus       406 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v  485 (560)
T PRK08751        406 GEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGV  485 (560)
T ss_pred             CCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCe
Confidence            88999999  99999999999999888877899999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+++|+|
T Consensus       486 ~~~~v~~  492 (560)
T PRK08751        486 LEVAAVG  492 (560)
T ss_pred             eeeEEEe
Confidence            9999875

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=99.91  E-value=1.6e-24  Score=188.57  Aligned_cols=145  Identities=21%  Similarity=0.204  Sum_probs=119.6

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceee-eeccCCcc-------------cccccccCc-ccccCC
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTC-HSLLPSVV-------------SSSLLIRTL-SMWVAV   93 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~-~~~~~~~~-------------~~~~~~~~~-~~~~~~   93 (174)
                      ...+.+++|+.++++++...++..+ ++++++.||.||++.. ....+...             ....+++.. .-..+.
T Consensus       419 g~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~  497 (691)
T KOG1256|consen  419 GNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGS  497 (691)
T ss_pred             CceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCC
Confidence            4578999999999999999998876 6899999999998722 22222111             111111111 112234


Q ss_pred             cCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCCCcc
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHPEMV  168 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~~V~  168 (174)
                      .|||++  +.||.||++||++|+++++.|||++|||+|++  +|.|.|.||++++||+ +|++|.|+.||++..+.+.|.
T Consensus       498 ~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~  577 (691)
T KOG1256|consen  498 KGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQ  577 (691)
T ss_pred             cceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceE
Confidence            699999  99999999999999999999999999999999  9999999999999999 999999999999999999999


Q ss_pred             eEEEeC
Q 030653          169 DAAVIP  174 (174)
Q Consensus       169 ~~~Vvg  174 (174)
                      +.+|.|
T Consensus       578 qi~V~g  583 (691)
T KOG1256|consen  578 QIFVLG  583 (691)
T ss_pred             EEEEEC
Confidence            999986

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.91  E-value=3.7e-24  Score=189.59  Aligned_cols=147  Identities=12%  Similarity=0.052  Sum_probs=116.8

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCC-CCeEEcCCCCCcceeeee---------------ccCCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLP-TRRLLLPSVLSSSSTCHS---------------LLPSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p-~~~i~~~yg~te~~~~~~---------------~~~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.++|+.++++..+.+.+.++ +..+.+.||+||...+..               +.+.......+.++.++ 
T Consensus       382 ~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~-  460 (652)
T TIGR01217       382 DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPV-  460 (652)
T ss_pred             ChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCC-
Confidence            4678999999999999999999988774 567788999999632221               11111122223444555 


Q ss_pred             cCCcCeEEe----CcccccccCCccccc--cc-cc-CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHH
Q 030653           91 VAVLGSKFV----KLISAGYVGEQEVTS--AT-LL-PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHL  160 (174)
Q Consensus        91 ~~~~Gel~v----~~v~~gY~~~~~~t~--~~-~~-~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~  160 (174)
                      .++.|||++    |+++.|||++++.++  .. |. .+|||+|||+|++  ||+|+|+||.||+||++|+||+|.|||++
T Consensus       461 ~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~  540 (652)
T TIGR01217       461 TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNA  540 (652)
T ss_pred             CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHH
Confidence            478999998    468999999998654  22 21 2689999999999  99999999999999999999999999999


Q ss_pred             HhcCCCcceEEEeC
Q 030653          161 LLSHPEMVDAAVIP  174 (174)
Q Consensus       161 l~~~~~V~~~~Vvg  174 (174)
                      |.+||.|.+|+|+|
T Consensus       541 l~~~p~V~eaavvg  554 (652)
T TIGR01217       541 VERLDEVRESLCIG  554 (652)
T ss_pred             HHhCCCcceEEEEe
Confidence            99999999999986

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.91  E-value=3.8e-24  Score=184.96  Aligned_cols=147  Identities=21%  Similarity=0.258  Sum_probs=123.8

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------CCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.++++.++....+++.+.+ ++++++.||+||+..+....                +.......+..+..++
T Consensus       298 ~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~  376 (536)
T PRK10946        298 QLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLP  376 (536)
T ss_pred             cccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCC
Confidence            345688899999999999999998877 68999999999965332211                1111111233455677


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  +.++.||+++++.+.+.|+.++||+|||++++  ||++++.||.+|+||++|++|+|.+||++|..+|+
T Consensus       377 ~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~  456 (536)
T PRK10946        377 QGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPA  456 (536)
T ss_pred             CCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCC
Confidence            899999999  99999999999999999988999999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|++
T Consensus       457 v~~~~v~~  464 (536)
T PRK10946        457 VIHAALVS  464 (536)
T ss_pred             cceEEEEc
Confidence            99999874

>PRK08315 AMP-binding domain protein; Validated

Probab=99.91  E-value=2.4e-24  Score=186.34  Aligned_cols=148  Identities=20%  Similarity=0.321  Sum_probs=125.5

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-----------------cCCccccccccc-Ccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-----------------LPSVVSSSLLIR-TLS   88 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-----------------~~~~~~~~~~~~-~~~   88 (174)
                      .+..++.+..+++.++....+.+.+.++..++++.||+||++.+...                 .+.......+.+ +..
T Consensus       313 ~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~  392 (559)
T PRK08315        313 DLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGET  392 (559)
T ss_pred             CchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCc
Confidence            45678888999999999999999999988889999999998643321                 122222222333 556


Q ss_pred             cccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653           89 MWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus        89 ~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      ++.++.|||++  ++++.||++++..+...+..++||+|||++++  ||+++|+||.+|+||++|++|+|.+||++|.++
T Consensus       393 ~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~  472 (559)
T PRK08315        393 VPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTH  472 (559)
T ss_pred             CCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhC
Confidence            77789999999  99999999999988888867899999999999  999999999999999999999999999999999


Q ss_pred             CCcceEEEeC
Q 030653          165 PEMVDAAVIP  174 (174)
Q Consensus       165 ~~V~~~~Vvg  174 (174)
                      ++|.+++|++
T Consensus       473 ~~v~~~~v~~  482 (559)
T PRK08315        473 PKIQDVQVVG  482 (559)
T ss_pred             CCceEEEEEe
Confidence            9999999874

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.91  E-value=6.2e-24  Score=180.77  Aligned_cols=147  Identities=24%  Similarity=0.286  Sum_probs=119.7

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------CCcccccccccCccccc-
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------PSVVSSSLLIRTLSMWV-   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------~~~~~~~~~~~~~~~~~-   91 (174)
                      .+..++.+.+|++.+++..++.+.+.+ +.++++.||+||++......              +.......+.++..++. 
T Consensus       239 ~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~  317 (471)
T PRK07787        239 ALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDEDGGPVPHD  317 (471)
T ss_pred             cccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCCCCCCCCC
Confidence            445678899999999999999999877 57899999999986432211              11111122223333332 


Q ss_pred             C-CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEecc-CCeEEECcEEeChHHHHHHHhcCC
Q 030653           92 A-VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGL-KDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        92 ~-~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~-~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      + ..|||++  ++++.||+++++.+.+.|..++||+|||+|++  ||+++++||+ |+++|++|++|+|.+||++|..++
T Consensus       318 ~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~  397 (471)
T PRK07787        318 GETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHP  397 (471)
T ss_pred             CCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCC
Confidence            2 3799999  89999999999999999877899999999999  9999999996 899999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+++|+|
T Consensus       398 ~v~~~~v~~  406 (471)
T PRK07787        398 GVREAAVVG  406 (471)
T ss_pred             CcceEEEEc
Confidence            999999985

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=2.3e-24  Score=185.94  Aligned_cols=147  Identities=23%  Similarity=0.289  Sum_probs=121.4

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC--------------Cccccccc-ccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP--------------SVVSSSLL-IRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~--------------~~~~~~~~-~~~~~~~~   91 (174)
                      .+..++.+.++|+.+++...+.+.+.+ +.++++.||+||++......+              .......+ ..+..++.
T Consensus       303 ~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~  381 (546)
T PRK08314        303 DLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPP  381 (546)
T ss_pred             CchhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCCC
Confidence            345688999999999999999999988 478999999999875433221              11111222 23456677


Q ss_pred             CCcCeEEe--CcccccccCCccccccccc---CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLL---PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~---~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      +..|||++  ++++.||+++++.+.+.|.   .++||+|||+|++  +|++++.||+||+||++|++|+|.+||++|.++
T Consensus       382 g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~  461 (546)
T PRK08314        382 GEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKH  461 (546)
T ss_pred             CCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhC
Confidence            88999999  9999999999998887763   2459999999999  899999999999999999999999999999999


Q ss_pred             CCcceEEEeC
Q 030653          165 PEMVDAAVIP  174 (174)
Q Consensus       165 ~~V~~~~Vvg  174 (174)
                      |+|.+++|+|
T Consensus       462 ~~v~~~~v~~  471 (546)
T PRK08314        462 PAIQEACVIA  471 (546)
T ss_pred             cchheEEEEe
Confidence            9999999875

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=3.5e-24  Score=185.27  Aligned_cols=144  Identities=25%  Similarity=0.396  Sum_probs=124.0

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------CCcccccccccCcccccCC
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIRTLSMWVAV   93 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~   93 (174)
                      .++.+.++++.+++.+++.+++.+|+..+++.||+||++.+....                +.......+..+.+++.++
T Consensus       291 ~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~  370 (542)
T PRK07786        291 ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGE  370 (542)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCC
Confidence            478889999999999999999999999999999999987543221                1122222344455677788


Q ss_pred             cCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcce
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVD  169 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~  169 (174)
                      .|||++  +.+++||+++++.+...| .++||+|||++++  ||+++++||.+|+||++|++|+|.+||++|.++|.|.+
T Consensus       371 ~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~  449 (542)
T PRK07786        371 VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVE  449 (542)
T ss_pred             ceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccE
Confidence            999998  999999999999998888 5899999999999  99999999999999999999999999999999999999


Q ss_pred             EEEeC
Q 030653          170 AAVIP  174 (174)
Q Consensus       170 ~~Vvg  174 (174)
                      ++|+|
T Consensus       450 ~~v~~  454 (542)
T PRK07786        450 VAVIG  454 (542)
T ss_pred             EEEEe
Confidence            99975

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.91  E-value=9.2e-24  Score=182.38  Aligned_cols=145  Identities=17%  Similarity=0.229  Sum_probs=120.0

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC----------------CcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP----------------SVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~----------------~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.++++.+++...+++.+.+ +..+++.||+||++.+....+                .......+..+..++
T Consensus       308 ~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~  386 (538)
T TIGR03208       308 PVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLS  386 (538)
T ss_pred             CCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCc
Confidence            446788899999999999999999887 578999999999864432211                111122233445566


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  +.++.||+++++.+.  .+.++||+|||+|++  ||+++++||.+|+||++|++|+|.+||++|.+||+
T Consensus       387 ~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~  464 (538)
T TIGR03208       387 QGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPA  464 (538)
T ss_pred             CCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcc
Confidence            788999999  899999999998764  346899999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|+|
T Consensus       465 v~~~~v~~  472 (538)
T TIGR03208       465 VAQVAIVA  472 (538)
T ss_pred             eeeEEEEe
Confidence            99999875

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK12316 peptide synthase; Provisional

Probab=99.91  E-value=2.1e-24  Score=220.99  Aligned_cols=146  Identities=17%  Similarity=0.170  Sum_probs=124.4

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---c----------------CCcccccccccCccc
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---L----------------PSVVSSSLLIRTLSM   89 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---~----------------~~~~~~~~~~~~~~~   89 (174)
                      ..++.+.+||+.+++++++++.+.+|+.++++.||.||++.....   .                +.....+.+..+..+
T Consensus      2261 ~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~v 2340 (5163)
T PRK12316       2261 PAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLL 2340 (5163)
T ss_pred             cceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEECCCCCCC
Confidence            368999999999999999999999999999999999998643211   1                111111223345577


Q ss_pred             ccCCcCeEEe--CcccccccCCccccccccc-------CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHH
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLL-------PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELE  158 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~-------~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE  158 (174)
                      +.|++|||+|  |++++||+++|+.|+++|.       .++||+|||+|++  ||.|+|+||+||+||++|+||+|.|||
T Consensus      2341 p~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE 2420 (5163)
T PRK12316       2341 APGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIE 2420 (5163)
T ss_pred             CCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHH
Confidence            8899999999  9999999999999999984       2369999999999  999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEeC
Q 030653          159 HLLLSHPEMVDAAVIP  174 (174)
Q Consensus       159 ~~l~~~~~V~~~~Vvg  174 (174)
                      ++|.++|+|.+++|++
T Consensus      2421 ~~l~~~~~v~~a~v~~ 2436 (5163)
T PRK12316       2421 ARLQAHPAVREAVVVA 2436 (5163)
T ss_pred             HHHhhCcccceEEEEE
Confidence            9999999999999874

>PRK12467 peptide synthase; Provisional

Probab=99.91  E-value=4.4e-24  Score=215.86  Aligned_cols=148  Identities=19%  Similarity=0.215  Sum_probs=125.0

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---c---C-------------CcccccccccCc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---L---P-------------SVVSSSLLIRTL   87 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---~---~-------------~~~~~~~~~~~~   87 (174)
                      .+..++.+..||+.++++.++.+.+.+|+.++++.||.||++.....   .   +             +......+..+.
T Consensus      1832 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~ 1911 (3956)
T PRK12467       1832 HPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLN 1911 (3956)
T ss_pred             cCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCC
Confidence            34578899999999999999999999999999999999998743221   1   0             001111233455


Q ss_pred             ccccCCcCeEEe--CcccccccCCccccccccc-------CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           88 SMWVAVLGSKFV--KLISAGYVGEQEVTSATLL-------PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        88 ~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~-------~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      .++.|+.|||++  +++++||+++|+.|+++|.       ..+||+|||+|++  ||.|+|+||+||+||++|+||+|.|
T Consensus      1912 ~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~e 1991 (3956)
T PRK12467       1912 PVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGE 1991 (3956)
T ss_pred             CCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHH
Confidence            678899999999  9999999999999999884       2359999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|.+||+|.+|+|++
T Consensus      1992 IE~~l~~~p~V~~a~vv~ 2009 (3956)
T PRK12467       1992 IEARLREQGGVREAVVIA 2009 (3956)
T ss_pred             HHHHHHhCCCcceEEEEE
Confidence            999999999999999974

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.91  E-value=5.1e-24  Score=199.90  Aligned_cols=145  Identities=17%  Similarity=0.164  Sum_probs=120.9

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------------CCcccccccccC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------------PSVVSSSLLIRT   86 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------------~~~~~~~~~~~~   86 (174)
                      +..++.++.||+.++++.++.+.+.+ ++++++.||+||++......                     ++....+.+..+
T Consensus       716 ~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~  794 (1296)
T PRK10252        716 CASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARM  794 (1296)
T ss_pred             CCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCC
Confidence            35688999999999999999998865 68999999999986432211                     111111224455


Q ss_pred             cccccCCcCeEEe--CcccccccCCcccccccccC------CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           87 LSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLP------DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        87 ~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~------~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      ..++.|+.|||++  +++++||+++|+.|+++|..      ++||+|||+|++  ||+++|+||+|++||++|+||+|.|
T Consensus       795 ~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~e  874 (1296)
T PRK10252        795 RPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGE  874 (1296)
T ss_pred             CCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHH
Confidence            6778899999999  99999999999999998843      349999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEe
Q 030653          157 LEHLLLSHPEMVDAAVI  173 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vv  173 (174)
                      ||++|.+||+|.+++|+
T Consensus       875 IE~~l~~~~~v~~a~v~  891 (1296)
T PRK10252        875 IDRAMQALPDVEQAVTH  891 (1296)
T ss_pred             HHHHHHhCccccceEEE
Confidence            99999999999999765

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.91  E-value=8.2e-24  Score=180.97  Aligned_cols=146  Identities=18%  Similarity=0.185  Sum_probs=120.8

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCc--------------ccccccccCcccccCC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSV--------------VSSSLLIRTLSMWVAV   93 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~   93 (174)
                      +..++.+.++++.+++...+.+.+.+ +..+++.||+||++.+.......              .....+..+..++.++
T Consensus       269 ~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~i~d~~~~~~~~g~  347 (501)
T PRK13390        269 VSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLGDLHICDDDGNELPAGR  347 (501)
T ss_pred             hhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecchhhccCCCCcCCcccceEEEECCCCCCCCCCC
Confidence            45788999999999999999988876 46799999999986432211100              1111233445667789


Q ss_pred             cCeEEe--CcccccccCCcccccccccC--CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLP--DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~--~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      .|||++  ++++.||+++++.+++.+..  ++|++|||+|++  ||+++|.||.||+||++|++|+|.+||++|..||.|
T Consensus       348 ~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v  427 (501)
T PRK13390        348 IGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAV  427 (501)
T ss_pred             ceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCe
Confidence            999999  89999999999999887743  689999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+++|+|
T Consensus       428 ~~~~v~~  434 (501)
T PRK13390        428 HDVAVIG  434 (501)
T ss_pred             eEEEEEe
Confidence            9999875

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=4.3e-24  Score=185.16  Aligned_cols=147  Identities=21%  Similarity=0.221  Sum_probs=123.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC---------------CcccccccccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP---------------SVVSSSLLIRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~---------------~~~~~~~~~~~~~~~~   91 (174)
                      .+..++.+.++++.++..+.+++.+.+ ++.+++.||+||++.+....+               .......+..+..++.
T Consensus       325 ~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~  403 (557)
T PRK07059        325 DFSKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPL  403 (557)
T ss_pred             CchhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCC
Confidence            345678889999999999999888876 689999999999875432211               1111222334556777


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      ++.|||++  +.++.||+++++.+...+..+|||+|||++++  ||+++++||++|+||++|++|+|.+||++|..+++|
T Consensus       404 g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V  483 (557)
T PRK07059        404 GEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGV  483 (557)
T ss_pred             CCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCce
Confidence            88999999  99999999999999888877899999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+++|+|
T Consensus       484 ~~~~v~~  490 (557)
T PRK07059        484 LEVAAVG  490 (557)
T ss_pred             eEEEEEe
Confidence            9999875

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.91  E-value=5.4e-24  Score=181.76  Aligned_cols=148  Identities=24%  Similarity=0.230  Sum_probs=124.4

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee--------------ccCCccccccc-ccCcccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS--------------LLPSVVSSSLL-IRTLSMW   90 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~--------------~~~~~~~~~~~-~~~~~~~   90 (174)
                      ..+..++.+.+|++.+++.+.+.+.+.+. .++++.||+||++....              +.+.......+ ..+..++
T Consensus       266 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~  344 (504)
T PRK07514        266 EAAAHMRLFISGSAPLLAETHREFQERTG-HAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELP  344 (504)
T ss_pred             ccccceeeEEecCCCCCHHHHHHHHHHhC-CcceeecccccccccccCCccccccCcccccCCCCcEEEEEECCCCCCCC
Confidence            34567899999999999999999998874 68999999999864321              11222222233 4455677


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  |+++.||+++++.+++.|..++||+|||++++  ||+++++||.||+||++|++|+|.+||+++.++++
T Consensus       345 ~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~  424 (504)
T PRK07514        345 PGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPG  424 (504)
T ss_pred             CCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCC
Confidence            788999998  99999999999999988877899999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|+|
T Consensus       425 v~~~~v~~  432 (504)
T PRK07514        425 VVESAVIG  432 (504)
T ss_pred             eeEEEEEe
Confidence            99999874

>PRK05691 peptide synthase; Validated

Probab=99.91  E-value=5.9e-24  Score=216.08  Aligned_cols=147  Identities=21%  Similarity=0.188  Sum_probs=124.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---C---------------CcccccccccCcc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---P---------------SVVSSSLLIRTLS   88 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---~---------------~~~~~~~~~~~~~   88 (174)
                      .+..++.+..||+.+++..++++.+.+|++++++.||.||++......   .               +......+.....
T Consensus      3981 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~ 4060 (4334)
T PRK05691       3981 ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALEL 4060 (4334)
T ss_pred             cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCC
Confidence            356789999999999999999999999999999999999987533211   0               0001111333446


Q ss_pred             cccCCcCeEEe--CcccccccCCccccccccc-------CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHH
Q 030653           89 MWVAVLGSKFV--KLISAGYVGEQEVTSATLL-------PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAEL  157 (174)
Q Consensus        89 ~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~-------~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eV  157 (174)
                      ++.|+.|||+|  +++++||+++|+.|+++|.       .++||+|||++++  ||.|+|+||+|++||++|+||.+.||
T Consensus      4061 ~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eI 4140 (4334)
T PRK05691       4061 VPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEI 4140 (4334)
T ss_pred             CCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHH
Confidence            77899999999  9999999999999999984       2469999999999  99999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEe
Q 030653          158 EHLLLSHPEMVDAAVI  173 (174)
Q Consensus       158 E~~l~~~~~V~~~~Vv  173 (174)
                      |++|.++|+|.+++|+
T Consensus      4141 E~~l~~~~~v~~a~v~ 4156 (4334)
T PRK05691       4141 EARLHEQAEVREAAVA 4156 (4334)
T ss_pred             HHHHHhCCCccEEEEE
Confidence            9999999999999875

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.91  E-value=6.5e-24  Score=183.76  Aligned_cols=145  Identities=21%  Similarity=0.246  Sum_probs=113.9

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC-------------------CcccccccccCc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP-------------------SVVSSSLLIRTL   87 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~-------------------~~~~~~~~~~~~   87 (174)
                      .+..++.+.++|+.+.....+. .+.+ +.++++.||+||++.+....+                   .......+.++.
T Consensus       284 ~~~~lr~~~~gG~~~~~~~~~~-~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~  361 (540)
T PRK05857        284 TVPSLRLVGYGGSRAIAADVRF-IEAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGI  361 (540)
T ss_pred             cCccceEEEEcCccCCchhHHH-HHHh-CCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECcccc
Confidence            4556788889998887777653 4444 689999999999864322111                   111111111211


Q ss_pred             ------ccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHH
Q 030653           88 ------SMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAEL  157 (174)
Q Consensus        88 ------~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eV  157 (174)
                            .++.++.|||++  |+++.|||++++.+.+.| .+|||+|||+|++  ||++++.||.||+||++|++|+|.||
T Consensus       362 ~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eI  440 (540)
T PRK05857        362 GPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEV  440 (540)
T ss_pred             CccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHH
Confidence                  123467899999  999999999999998888 5899999999999  99999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEeC
Q 030653          158 EHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       158 E~~l~~~~~V~~~~Vvg  174 (174)
                      |++|..||+|.+|+|+|
T Consensus       441 E~~l~~~~~V~~~~v~~  457 (540)
T PRK05857        441 DRIAEGVSGVREAACYE  457 (540)
T ss_pred             HHHHHhCCCeeEEEEEe
Confidence            99999999999999875

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.91  E-value=1.1e-23  Score=182.24  Aligned_cols=141  Identities=20%  Similarity=0.220  Sum_probs=117.1

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccccCcccccCC
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLIRTLSMWVAV   93 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~   93 (174)
                      ..++.+.++|+.+++..++.+.+.++ ..+++.||+||++.+....               +.......+.++..++.++
T Consensus       312 ~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~  390 (537)
T PRK13382        312 RSLRFAAASGSRMRPDVVIAFMDQFG-DVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGE  390 (537)
T ss_pred             cceeEEEEcCCCCCHHHHHHHHHHcC-CcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCC
Confidence            46889999999999999999999986 4699999999987544321               2222222344556677788


Q ss_pred             cCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcce
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVD  169 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~  169 (174)
                      .|||++  |+++.||+  ++.+.. + .+|||+|||++++  ||+++|.||+||+||++|++|+|.+||++|.+||+|.+
T Consensus       391 ~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~  466 (537)
T PRK13382        391 VGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAE  466 (537)
T ss_pred             eeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEee
Confidence            999999  99999998  444443 3 3799999999999  99999999999999999999999999999999999999


Q ss_pred             EEEeC
Q 030653          170 AAVIP  174 (174)
Q Consensus       170 ~~Vvg  174 (174)
                      ++|+|
T Consensus       467 ~~v~~  471 (537)
T PRK13382        467 AAVIG  471 (537)
T ss_pred             EEEEc
Confidence            99875

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=5.6e-24  Score=181.66  Aligned_cols=148  Identities=29%  Similarity=0.363  Sum_probs=124.5

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc-----------------CCcccccccccCccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL-----------------PSVVSSSLLIRTLSM   89 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~-----------------~~~~~~~~~~~~~~~   89 (174)
                      .+..++.+.++++.+++.+++.+++.++...+++.||+||++.+....                 +.......+..+..+
T Consensus       279 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~  358 (513)
T PRK07656        279 DLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEV  358 (513)
T ss_pred             CccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCC
Confidence            456789999999999999999999999866899999999996433221                 111111223344566


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.+..|||++  +.++.||++++..+...+..++||+|||+|++  ||+++++||.||+||++|.+++|.+||++|.+++
T Consensus       359 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  438 (513)
T PRK07656        359 PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHP  438 (513)
T ss_pred             CCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCC
Confidence            6778999999  99999999999988888866899999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      +|.+++|++
T Consensus       439 ~i~~~~v~~  447 (513)
T PRK07656        439 AVAEAAVIG  447 (513)
T ss_pred             CeeEEEEEe
Confidence            999999874

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.91  E-value=1.2e-23  Score=174.67  Aligned_cols=146  Identities=25%  Similarity=0.299  Sum_probs=122.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-------------------cCCcccccccccCc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-------------------LPSVVSSSLLIRTL   87 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-------------------~~~~~~~~~~~~~~   87 (174)
                      .+..++.+..+++.+++.+.+.+.+.++++.+++.||+||++.+...                   .+.....+.+..+.
T Consensus       232 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~  311 (408)
T TIGR01733       232 ALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLR  311 (408)
T ss_pred             cccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCCCC
Confidence            45678999999999999999999999998999999999999865531                   11111222233345


Q ss_pred             ccccCCcCeEEe--CcccccccCCcccccccccCC------C--eEecCCeeee--CCeEEEEeccCCeEEECcEEeChH
Q 030653           88 SMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPD------G--WMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPA  155 (174)
Q Consensus        88 ~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~------g--~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~  155 (174)
                      .++.++.|||++  +.++.||+++++.+...|..+      +  ||+|||++++  ||++++.||.+|+|+++|++|+|.
T Consensus       312 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~  391 (408)
T TIGR01733       312 PVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELG  391 (408)
T ss_pred             CCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechH
Confidence            667788999999  999999999999888777322      2  9999999999  899999999999999999999999


Q ss_pred             HHHHHHhcCCCcceEEE
Q 030653          156 ELEHLLLSHPEMVDAAV  172 (174)
Q Consensus       156 eVE~~l~~~~~V~~~~V  172 (174)
                      +||++|..++.|.+|+|
T Consensus       392 ~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       392 EIEAALLRHPGVREAVV  408 (408)
T ss_pred             HHHHHHhcCcchhhhcC
Confidence            99999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.91  E-value=1e-23  Score=185.49  Aligned_cols=147  Identities=14%  Similarity=0.080  Sum_probs=119.4

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCccee-eee-----------------ccCCcccccccc-cCc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSST-CHS-----------------LLPSVVSSSLLI-RTL   87 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~-~~~-----------------~~~~~~~~~~~~-~~~   87 (174)
                      .+..++.+.++|+.+++++.+.+.+.++ ..+++.||.||++. +..                 +.+.......+. .+.
T Consensus       353 ~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~  431 (629)
T PRK10524        353 DLSSLRALFLAGEPLDEPTASWISEALG-VPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGE  431 (629)
T ss_pred             ChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCC
Confidence            3567899999999999999999888774 78999999999862 111                 111111222333 455


Q ss_pred             ccccCCcCeEEe--C---cccccccCCccccccccc---CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHH
Q 030653           88 SMWVAVLGSKFV--K---LISAGYVGEQEVTSATLL---PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAEL  157 (174)
Q Consensus        88 ~~~~~~~Gel~v--~---~v~~gY~~~~~~t~~~~~---~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eV  157 (174)
                      .++.++.|||++  |   +++.+||++++.+...+.   .++||+|||+|++  ||+++|+||.||+||++|++|+|.||
T Consensus       432 ~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eI  511 (629)
T PRK10524        432 PCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREI  511 (629)
T ss_pred             CCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHH
Confidence            677889999998  4   578999999987765542   4689999999999  99999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEeC
Q 030653          158 EHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       158 E~~l~~~~~V~~~~Vvg  174 (174)
                      |++|.+||+|.+++|+|
T Consensus       512 E~~l~~~p~V~e~~vvg  528 (629)
T PRK10524        512 EESISSHPAVAEVAVVG  528 (629)
T ss_pred             HHHHHhCCCcceEEEEc
Confidence            99999999999999986

>PRK05691 peptide synthase; Validated

Probab=99.90  E-value=1e-23  Score=214.45  Aligned_cols=147  Identities=22%  Similarity=0.277  Sum_probs=125.8

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec----------------cCCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL----------------LPSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~----------------~~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.+||+.+++..++.+.+.+|+.++++.||.||++.....                .+.....+.+..+..++
T Consensus      1386 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp 1465 (4334)
T PRK05691       1386 ACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLP 1465 (4334)
T ss_pred             cCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCC
Confidence            45678999999999999999999999999999999999998643211                11111222244556778


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccC-------CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLP-------DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~-------~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      .|++|||++  |++++||+++|+.|+++|..       .+||+|||+|++  ||+++|+||+|++||++|+||+|.|||+
T Consensus      1466 ~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~ 1545 (4334)
T PRK05691       1466 PGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQA 1545 (4334)
T ss_pred             CCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHH
Confidence            899999999  99999999999999998842       359999999999  9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEe
Q 030653          160 LLLSHPEMVDAAVI  173 (174)
Q Consensus       160 ~l~~~~~V~~~~Vv  173 (174)
                      +|.+||+|.+|+|+
T Consensus      1546 ~l~~~~~V~~a~v~ 1559 (4334)
T PRK05691       1546 RLLAQPGVAQAAVL 1559 (4334)
T ss_pred             HHHhCCCcceEEEE
Confidence            99999999999986

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.90  E-value=5.7e-24  Score=197.14  Aligned_cols=147  Identities=22%  Similarity=0.192  Sum_probs=120.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc------------------------CCcccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL------------------------PSVVSSSL   82 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~------------------------~~~~~~~~   82 (174)
                      .+..++.+.+|++.++++..+.+++.+ +.++++.||+||++.+....                        |.......
T Consensus       896 ~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~  974 (1146)
T PRK08633        896 MFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIV  974 (1146)
T ss_pred             cCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEE
Confidence            456789999999999999999999988 58999999999986443221                        11111122


Q ss_pred             c-ccCcccccCCcCeEEe--CcccccccCCcccccccccC---CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeCh
Q 030653           83 L-IRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLP---DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAP  154 (174)
Q Consensus        83 ~-~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~---~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p  154 (174)
                      + ..+.+++.++.|||++  |.++.||+++|+.+++.+..   ++||+|||++++  ||+++++||.||+||++|++|+|
T Consensus       975 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~ 1054 (1146)
T PRK08633        975 DPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPL 1054 (1146)
T ss_pred             cCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECH
Confidence            2 2345677889999999  99999999999999888732   389999999999  99999999999999999999999


Q ss_pred             HHHHHHHhcCC--CcceEEEeC
Q 030653          155 AELEHLLLSHP--EMVDAAVIP  174 (174)
Q Consensus       155 ~eVE~~l~~~~--~V~~~~Vvg  174 (174)
                      .|||++|.+||  .+.+++|++
T Consensus      1055 ~eiE~~l~~~~~~~~~~~~v~~ 1076 (1146)
T PRK08633       1055 GAVEEELAKALGGEEVVFAVTA 1076 (1146)
T ss_pred             HHHHHHHHhccCCCCceEEEEe
Confidence            99999999999  456777764

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.90  E-value=8.1e-24  Score=184.56  Aligned_cols=147  Identities=23%  Similarity=0.365  Sum_probs=119.4

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCC-----CeEEcCCCCCcceeeeecc---------------------------
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPT-----RRLLLPSVLSSSSTCHSLL---------------------------   74 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~-----~~i~~~yg~te~~~~~~~~---------------------------   74 (174)
                      .+..++.+.++|+.+++...+.+.+.++.     ..+++.||+||++......                           
T Consensus       297 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (579)
T PRK09192        297 DLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGA  376 (579)
T ss_pred             chhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCC
Confidence            35678899999999999999999888752     4588999999986432211                           


Q ss_pred             ---------------CCcccccccccCcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee-CCeEE
Q 030653           75 ---------------PSVVSSSLLIRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-DSFLF  136 (174)
Q Consensus        75 ---------------~~~~~~~~~~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-dG~l~  136 (174)
                                     |.......+.++..++.++.|||++  +.+++|||++ +.+.+.+..++||+|||+|++ ||+++
T Consensus       377 ~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~~~G~l~  455 (579)
T PRK09192        377 ETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYLLDGYLY  455 (579)
T ss_pred             CCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeEECCEEE
Confidence                           1111111233444566778999999  9999999999 667777777899999999999 99999


Q ss_pred             EEeccCCeEEECcEEeChHHHHHHHhcCCCcc--eEEEeC
Q 030653          137 IVDGLKDLVKYKGCQVAPAELEHLLLSHPEMV--DAAVIP  174 (174)
Q Consensus       137 ~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~--~~~Vvg  174 (174)
                      |+||+||+||++|++|+|.|||++|..||+|.  +++|++
T Consensus       456 ~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~  495 (579)
T PRK09192        456 ITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFS  495 (579)
T ss_pred             EEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEE
Confidence            99999999999999999999999999999998  788764

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.90  E-value=2e-23  Score=178.51  Aligned_cols=148  Identities=19%  Similarity=0.236  Sum_probs=123.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLIRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~~~~~~~~   91 (174)
                      .+..++.+.++|+.+++.+++.+++.+|+..+++.||+||++.+....               +.......+..+..++.
T Consensus       272 ~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~  351 (515)
T TIGR03098       272 AAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAP  351 (515)
T ss_pred             CccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCC
Confidence            445678999999999999999999999999999999999986433322               22222222334456667


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccC-----------CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLP-----------DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~-----------~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      ++.|||++  +.++.|||++++.+...|..           ++||+|||+|++  ||++++.||.+|+||++|++|+|.+
T Consensus       352 ~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~e  431 (515)
T TIGR03098       352 GEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTE  431 (515)
T ss_pred             CCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHH
Confidence            88999998  99999999999888766532           348999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|..+|.|.+++|+|
T Consensus       432 iE~~l~~~~~v~~~~v~~  449 (515)
T TIGR03098       432 VEEVAYATGLVAEAVAFG  449 (515)
T ss_pred             HHHHHhcCCCeeEEEEEe
Confidence            999999999999999985

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.90  E-value=2.7e-23  Score=176.99  Aligned_cols=139  Identities=21%  Similarity=0.201  Sum_probs=110.8

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-ccCCccc----cc-ccccCccccc--CCcCeEEe
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-LLPSVVS----SS-LLIRTLSMWV--AVLGSKFV   99 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-~~~~~~~----~~-~~~~~~~~~~--~~~Gel~v   99 (174)
                      +..++.+.++|+.+++...+++.+  .+..+++.||+||++.... ..+....    .. ....+.++..  ++.|||++
T Consensus       229 l~~l~~i~~gG~~l~~~~~~~~~~--~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~g~~Gel~v  306 (452)
T PRK07445        229 LAQFRTILLGGAPAWPSLLEQARQ--LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPANQTGNITI  306 (452)
T ss_pred             hhcceEEEECCccCCHHHHHHHHh--cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcCCCcceEEE
Confidence            457889999999999999988875  3789999999999864322 1221100    01 1222333332  67899999


Q ss_pred             --CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653          100 --KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       100 --~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                        |.++.||++++.      ..++||+|||++++  ||+++|.||.||+||++|+||+|.|||++|.+||+|.+|+|+|
T Consensus       307 ~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g  379 (452)
T PRK07445        307 QAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLG  379 (452)
T ss_pred             eCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence              999999998653      24789999999999  9999999999999999999999999999999999999999985

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.90  E-value=1.1e-23  Score=185.47  Aligned_cols=147  Identities=15%  Similarity=0.064  Sum_probs=118.4

Q ss_pred             ccccceEEEccccCChhhHHHHHhhC-----CCCeEEcCCCCCcceeeeeccCCcc---ccc-ccccCcc---cccCCcC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTL-----PTRRLLLPSVLSSSSTCHSLLPSVV---SSS-LLIRTLS---MWVAVLG   95 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~-----p~~~i~~~yg~te~~~~~~~~~~~~---~~~-~~~~~~~---~~~~~~G   95 (174)
                      +..++.+.+||..+++++.+.+++.+     +++.+++.||+||++.+........   ... ....+.+   ++.++.|
T Consensus       345 ~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~~G~~G  424 (624)
T PRK12582        345 FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAPVGDKY  424 (624)
T ss_pred             hhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEccCCCce
Confidence            45789999999999999999998864     2468999999999875544211110   011 1222222   2347889


Q ss_pred             eEEe--CcccccccCCcccccccccCCCeEecCCeeee-C-----CeEEEEeccCCeEEE-CcEEeChHHHH--HHHhcC
Q 030653           96 SKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-D-----SFLFIVDGLKDLVKY-KGCQVAPAELE--HLLLSH  164 (174)
Q Consensus        96 el~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-d-----G~l~~~GR~~d~i~~-~G~~v~p~eVE--~~l~~~  164 (174)
                      ||++  |+++.|||++|+.|++.|+.+|||+|||+|++ |     |+++|+||+||+||+ +|++|+|.+||  .++..|
T Consensus       425 El~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~  504 (624)
T PRK12582        425 EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACS  504 (624)
T ss_pred             EEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcC
Confidence            9999  99999999999999999977899999999998 3     799999999999996 89999999885  688999


Q ss_pred             CCcceEEEeC
Q 030653          165 PEMVDAAVIP  174 (174)
Q Consensus       165 ~~V~~~~Vvg  174 (174)
                      |.|.+|+|+|
T Consensus       505 p~V~~a~VvG  514 (624)
T PRK12582        505 PVIHDAVVAG  514 (624)
T ss_pred             cchheEEEEc
Confidence            9999999987

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.90  E-value=1.3e-23  Score=180.32  Aligned_cols=143  Identities=20%  Similarity=0.266  Sum_probs=116.6

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee---------------eccCCcccccccccCcccccCCc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH---------------SLLPSVVSSSLLIRTLSMWVAVL   94 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~   94 (174)
                      .++.+..++ ..+....+.+.+.+ ++++++.||+||++...               .+.+.......+.++..++.++.
T Consensus       289 ~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~  366 (517)
T PRK08008        289 CLREVMFYL-NLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI  366 (517)
T ss_pred             cceeeEEec-CCCHHHHHHHHHHh-CCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc
Confidence            345555554 56677777778766 68999999999986321               11222222333455667778899


Q ss_pred             CeEEe-----CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           95 GSKFV-----KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        95 Gel~v-----~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      |||++     ++++.|||++++.+++.+..+|||+|||++++  ||+++++||.+|+||++|++|+|.+||++|..|+.|
T Consensus       367 Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v  446 (517)
T PRK08008        367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKI  446 (517)
T ss_pred             ceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCce
Confidence            99998     48999999999999999988999999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+++|+|
T Consensus       447 ~~~~v~g  453 (517)
T PRK08008        447 QDIVVVG  453 (517)
T ss_pred             eeEEEEc
Confidence            9999986

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.90  E-value=1.1e-23  Score=181.16  Aligned_cols=146  Identities=23%  Similarity=0.266  Sum_probs=121.5

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------------CCcccccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------------PSVVSSSLLI   84 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------------~~~~~~~~~~   84 (174)
                      .+..++.+.++|+.++....+.+.+.++ ..+++.||+||++.+....                      +.......+.
T Consensus       278 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~  356 (528)
T PRK07470        278 DHSSLRYVIYAGAPMYRADQKRALAKLG-KVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDD  356 (528)
T ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHHhC-cHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECC
Confidence            3456888999999999999999888875 5788999999976432211                      1111122234


Q ss_pred             cCcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHH
Q 030653           85 RTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHL  160 (174)
Q Consensus        85 ~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~  160 (174)
                      ++..++.++.|||++  +.++.||+++++.++..| .++||+|||++++  ||+++++||.||+||++|++|+|.+||++
T Consensus       357 ~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~  435 (528)
T PRK07470        357 EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEK  435 (528)
T ss_pred             CCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHH
Confidence            455677788999999  999999999999888777 5899999999999  99999999999999999999999999999


Q ss_pred             HhcCCCcceEEEeC
Q 030653          161 LLSHPEMVDAAVIP  174 (174)
Q Consensus       161 l~~~~~V~~~~Vvg  174 (174)
                      |..++.|.+++|+|
T Consensus       436 l~~~~~v~~~~v~~  449 (528)
T PRK07470        436 LLTHPAVSEVAVLG  449 (528)
T ss_pred             HHhCCCceEEEEEe
Confidence            99999999999985

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.90  E-value=1.2e-23  Score=181.89  Aligned_cols=146  Identities=23%  Similarity=0.297  Sum_probs=122.8

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------CCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.+||+.+++...+.+.+.  ++++++.||+||++......                +.......+..+..++
T Consensus       300 ~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~  377 (547)
T PRK06087        300 DLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLP  377 (547)
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCc
Confidence            34578899999999999999887764  78999999999986443221                1111122244455677


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  +.++.||+++++.+...+..++||+|||++++  ||+++++||.+|+|+.+|++|+|.+||++|..+|+
T Consensus       378 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~  457 (547)
T PRK06087        378 PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPK  457 (547)
T ss_pred             CCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCC
Confidence            788999998  99999999999998888877899999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|+|
T Consensus       458 v~~~~v~~  465 (547)
T PRK06087        458 IHDACVVA  465 (547)
T ss_pred             eeEEEEEe
Confidence            99999885

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.90  E-value=1.2e-23  Score=182.45  Aligned_cols=145  Identities=25%  Similarity=0.348  Sum_probs=121.0

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---------------cCCccccccc-ccCccccc
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---------------LPSVVSSSLL-IRTLSMWV   91 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---------------~~~~~~~~~~-~~~~~~~~   91 (174)
                      +..++.+.++++.+++...+.+.+.+ +..+++.||+||++.....               .+.......+ ..+..++.
T Consensus       322 ~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~  400 (563)
T PRK06710        322 ISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPP  400 (563)
T ss_pred             hhhhhheeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCC
Confidence            45788899999999999999988876 6789999999998753221               1111111222 33456677


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      ++.|||++  +.++.||+++++.+...+ .+|||+|||++++  ||+++++||.||+||++|.+|+|.+||++|..+|.|
T Consensus       401 g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v  479 (563)
T PRK06710        401 GEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKV  479 (563)
T ss_pred             CCceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcce
Confidence            88999999  899999999999988877 5899999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+++|+|
T Consensus       480 ~~~~v~~  486 (563)
T PRK06710        480 QEVVTIG  486 (563)
T ss_pred             eeEEEEc
Confidence            9999985

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.90  E-value=1.9e-23  Score=181.83  Aligned_cols=145  Identities=21%  Similarity=0.227  Sum_probs=115.6

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCC-----CCeEEcCCCCCcceeeeeccC-C-------------------------
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLP-----TRRLLLPSVLSSSSTCHSLLP-S-------------------------   76 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p-----~~~i~~~yg~te~~~~~~~~~-~-------------------------   76 (174)
                      +..++.+.++++.+++.+++.+.+.|+     +..+++.||+||++....... .                         
T Consensus       287 ~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  366 (578)
T PRK05850        287 LGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGG  366 (578)
T ss_pred             hhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCC
Confidence            456888999999999999999988763     457899999999753211100 0                         


Q ss_pred             ------------ccccccc-ccCcccccCCcCeEEe--CcccccccCCccccccccc-----------CCCeEecCCeee
Q 030653           77 ------------VVSSSLL-IRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL-----------PDGWMRTGDLCY  130 (174)
Q Consensus        77 ------------~~~~~~~-~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~-----------~~g~~~TGD~g~  130 (174)
                                  .....++ ..+..++.++.|||++  |+++.||+++|+.|++.|.           .++||+|||+|+
T Consensus       367 g~~~~~~g~p~~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~  446 (578)
T PRK05850        367 GTPLVSYGSPRSPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGF  446 (578)
T ss_pred             CceEEeccCCCCCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceee
Confidence                        0011112 2245677789999999  9999999999999998874           257999999999


Q ss_pred             e-CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEe
Q 030653          131 E-DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI  173 (174)
Q Consensus       131 ~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vv  173 (174)
                      + ||+|+|+||++|+||++|++|+|.|||++|.+||.+. ++|+
T Consensus       447 ~~~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~  489 (578)
T PRK05850        447 ISEGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAI  489 (578)
T ss_pred             EECCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEE
Confidence            9 9999999999999999999999999999999999865 5554

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.90  E-value=1.8e-23  Score=181.80  Aligned_cols=146  Identities=27%  Similarity=0.307  Sum_probs=121.1

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---------------cCCccccccccc--Cccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---------------LPSVVSSSLLIR--TLSM   89 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---------------~~~~~~~~~~~~--~~~~   89 (174)
                      .+..++.+.++++.+++..++.+.+.+ +..+++.||+||++.+...               .+.......+.+  +..+
T Consensus       334 ~~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~  412 (573)
T PRK05605        334 DLSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETM  412 (573)
T ss_pred             CchhccEEEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccC
Confidence            345689999999999999999998876 5789999999998643221               111111222222  3456


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.+..|||++  +.++.||+++++.+...| .+|||+|||++++  +|+++++||.||+||++|++|+|.+||+++..++
T Consensus       413 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~  491 (573)
T PRK05605        413 PDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHP  491 (573)
T ss_pred             CCCCeeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCc
Confidence            7788999999  899999999999998888 4679999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+++|+|
T Consensus       492 ~i~~~~v~~  500 (573)
T PRK05605        492 GVEDAAVVG  500 (573)
T ss_pred             ccceEEEEe
Confidence            999999875

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.90  E-value=7.8e-23  Score=168.44  Aligned_cols=137  Identities=20%  Similarity=0.237  Sum_probs=111.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcccccccccCcccccCCcCeEEe--Ccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFV--KLISA  104 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gel~v--~~v~~  104 (174)
                      .+..++.+.++++.+++...+.+.+.  +.++++.||+||++......      ..+..+.++.. ..|++++  +.++.
T Consensus       149 ~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~------G~~~~g~~v~i-~~Gei~v~g~~~~~  219 (358)
T PRK07824        149 ALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETSGGCVYD------GVPLDGVRVRV-EDGRIALGGPTLAK  219 (358)
T ss_pred             CcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCccCCCcCcC------ceeCCCCEEEe-cCCEEEEecCcccc
Confidence            45678899999999999999988763  78999999999976422110      11122222222 4599988  99999


Q ss_pred             cccCCcccccccccCCCeEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653          105 GYVGEQEVTSATLLPDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       105 gY~~~~~~t~~~~~~~g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      ||+++++.+  .+..+|||+|||++++ ||++++.||.||+||++|++|+|.+||++|.+||+|.+|+|+|
T Consensus       220 gY~~~~~~~--~~~~~g~~~TGDl~~~~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~  288 (358)
T PRK07824        220 GYRNPVDPD--PFAEPGWFRTDDLGALDDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFG  288 (358)
T ss_pred             ccCCCcccc--cccCCCceecccEEEEeCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            999988743  3445789999999999 9999999999999999999999999999999999999999985

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.90  E-value=3.5e-23  Score=180.88  Aligned_cols=142  Identities=20%  Similarity=0.287  Sum_probs=112.8

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---------cCCc--------c---------ccccc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---------LPSV--------V---------SSSLL   83 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---------~~~~--------~---------~~~~~   83 (174)
                      ..+++.++++..+...++.+.+ + +.++++.||+||++.....         .+..        .         ....+
T Consensus       301 ~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~  378 (579)
T PLN03102        301 GPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKN  378 (579)
T ss_pred             cceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceEEec
Confidence            4677899999999998888866 4 6789999999998632210         0000        0         00001


Q ss_pred             cc-Cccccc--CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           84 IR-TLSMWV--AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        84 ~~-~~~~~~--~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      .+ +..++.  ++.|||++  |+++.|||++++.+...| .+|||+|||+|++  ||+++|+||.+|+||++|++|+|.+
T Consensus       379 ~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~e  457 (579)
T PLN03102        379 KETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVE  457 (579)
T ss_pred             cccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHH
Confidence            11 122332  35799999  999999999999998888 5899999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|.+||.|.+++|+|
T Consensus       458 IE~~l~~~p~V~~a~vv~  475 (579)
T PLN03102        458 VENVLYKYPKVLETAVVA  475 (579)
T ss_pred             HHHHHHhCCCcceeEEEe
Confidence            999999999999999985

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.89  E-value=3.3e-23  Score=179.73  Aligned_cols=145  Identities=23%  Similarity=0.289  Sum_probs=121.6

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccccCcccccC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~~~~~~~~~   92 (174)
                      +..++.+.++++.++....+.+++.+ +..+++.||+||++......               +.......+.++..++.+
T Consensus       324 ~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g  402 (560)
T PRK08974        324 FSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPG  402 (560)
T ss_pred             ccceeEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCC
Confidence            45688899999999999988888865 78899999999987443221               111122223345567778


Q ss_pred             CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcc
Q 030653           93 VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMV  168 (174)
Q Consensus        93 ~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~  168 (174)
                      +.|||++  +.++.||+++++.++..| .+|||+|||++++  +|+++++||.+|+|+++|++|+|.+||++|.++|.|.
T Consensus       403 ~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~  481 (560)
T PRK08974        403 EPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVL  481 (560)
T ss_pred             CceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCee
Confidence            8999999  999999999999888887 6899999999999  8999999999999999999999999999999999999


Q ss_pred             eEEEeC
Q 030653          169 DAAVIP  174 (174)
Q Consensus       169 ~~~Vvg  174 (174)
                      +++|+|
T Consensus       482 ~~~v~~  487 (560)
T PRK08974        482 EVAAVG  487 (560)
T ss_pred             EEEEEe
Confidence            999874

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.89  E-value=4.2e-23  Score=175.39  Aligned_cols=142  Identities=23%  Similarity=0.325  Sum_probs=118.1

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee-ecc---------------CCcccccccccCcccccC
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH-SLL---------------PSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~   92 (174)
                      ..++.+..+|+.++..+++.+++.  ++.+++.||+||++... ...               +.......+ .+..++.+
T Consensus       254 ~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~~~~~~~g  330 (483)
T PRK03640        254 SSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-DGVVVPPF  330 (483)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEec-CCCcCCCC
Confidence            478999999999999999988874  78899999999975321 111               111111111 23456678


Q ss_pred             CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcc
Q 030653           93 VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMV  168 (174)
Q Consensus        93 ~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~  168 (174)
                      ..|||++  |.++.||+++++.+...| .++||+|||++++  ||+++++||++|++|.+|++|+|.+||+++..++.|.
T Consensus       331 ~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~  409 (483)
T PRK03640        331 EEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVA  409 (483)
T ss_pred             CceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCee
Confidence            8999999  999999999999888888 5899999999999  9999999999999999999999999999999999999


Q ss_pred             eEEEeC
Q 030653          169 DAAVIP  174 (174)
Q Consensus       169 ~~~Vvg  174 (174)
                      +++|++
T Consensus       410 ~~~v~~  415 (483)
T PRK03640        410 EAGVVG  415 (483)
T ss_pred             EEEEEe
Confidence            999874

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.89  E-value=6.5e-23  Score=183.27  Aligned_cols=147  Identities=16%  Similarity=0.159  Sum_probs=111.4

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcccc---cc-cccCccc------ccCCcCe
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSS---SL-LIRTLSM------WVAVLGS   96 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~~---~~-~~~~~~~------~~~~~Ge   96 (174)
                      .+..++.+.++|+.++++..+.+++.+ ++.+++.||+||++.+....+.....   .. +..+.++      +.+..||
T Consensus       477 ~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~~~~~~Ge  555 (718)
T PRK08043        477 DFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEQGGR  555 (718)
T ss_pred             cccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCCCCCCceE
Confidence            356789999999999999999999887 57899999999987544322111000   00 1111111      1235699


Q ss_pred             EEe--CcccccccCC--ccc-------ccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhc
Q 030653           97 KFV--KLISAGYVGE--QEV-------TSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLS  163 (174)
Q Consensus        97 l~v--~~v~~gY~~~--~~~-------t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~  163 (174)
                      |++  |+++.|||++  ++.       +...+..+|||+|||+|++  ||+++|+||+||+||++|++|+|.|||+++..
T Consensus       556 l~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~  635 (718)
T PRK08043        556 LQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALG  635 (718)
T ss_pred             EEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHh
Confidence            998  9999999983  442       2222335799999999999  99999999999999999999999999999999


Q ss_pred             CCCcceEEEeC
Q 030653          164 HPEMVDAAVIP  174 (174)
Q Consensus       164 ~~~V~~~~Vvg  174 (174)
                      |+.+.+++|++
T Consensus       636 ~~~~~~~avv~  646 (718)
T PRK08043        636 VSPDKQHATAI  646 (718)
T ss_pred             CCccceEEEEE
Confidence            98888777764

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.89  E-value=8.7e-23  Score=173.01  Aligned_cols=141  Identities=16%  Similarity=0.169  Sum_probs=113.4

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcc-cccc-cccCcccccCCcCeEEe--Cccccc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVV-SSSL-LIRTLSMWVAVLGSKFV--KLISAG  105 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~Gel~v--~~v~~g  105 (174)
                      .++.+.+|++.++....+.+.+.  +.++++.||+||++.......... .... ...+..+.. ..|||++  +.++.|
T Consensus       241 ~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~G~~~~~~~~~i-~~gel~v~g~~~~~g  317 (458)
T PRK09029        241 SLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRADGLAGVGSPLPGREVKL-VDGEIWLRGASLALG  317 (458)
T ss_pred             cceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCCCCCCCCCCCCCCCEEEE-eCCEEEEecCceeee
Confidence            57889999999999999988764  789999999999875433222111 0111 222222222 3599998  899999


Q ss_pred             ccCCcccccccccCCCeEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653          106 YVGEQEVTSATLLPDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       106 Y~~~~~~t~~~~~~~g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      |+++++.+.... .++||+|||+|++ ||+++|.||++|+||++|++|+|.|||++|.++|+|.+++|+|
T Consensus       318 Y~~~~~~~~~~~-~~~~~~TGD~~~~~~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~  386 (458)
T PRK09029        318 YWRQGQLVPLVN-DEGWFATRDRGEWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVP  386 (458)
T ss_pred             eecCcccccccc-CCCccCCCCcEEEeCCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEc
Confidence            999998776544 5899999999999 9999999999999999999999999999999999999999985

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.89  E-value=5.1e-23  Score=177.89  Aligned_cols=146  Identities=19%  Similarity=0.238  Sum_probs=120.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccc--cccCccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSL--LIRTLSM   89 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~--~~~~~~~   89 (174)
                      .+..++.++++++.+++...+.+.+.+ +..+++.||+||++......               +.......  +..+..+
T Consensus       310 ~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~  388 (541)
T TIGR03205       310 DLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVL  388 (541)
T ss_pred             CccccceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccC
Confidence            445789999999999999998888766 58899999999986433211               11111111  2233456


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.++.|||++  ++++.||+++++.+.+.| .++||+|||++++  ||+++++||.||+||++|++|+|.+||+++.+|+
T Consensus       389 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~  467 (541)
T TIGR03205       389 PPGEVGELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHP  467 (541)
T ss_pred             CCCCeeEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCC
Confidence            6788999999  899999999999988888 4789999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|.+++|+|
T Consensus       468 ~v~~~~v~~  476 (541)
T TIGR03205       468 GVQEVIVIG  476 (541)
T ss_pred             CeeeEEEEe
Confidence            999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.89  E-value=3.5e-23  Score=181.94  Aligned_cols=147  Identities=13%  Similarity=0.105  Sum_probs=115.8

Q ss_pred             ccccceEEEccccCChhhHHHHHhhC-----CCCeEEcCCCCCcceeeeeccCCccc---ccc-cccCccc---ccCCcC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTL-----PTRRLLLPSVLSSSSTCHSLLPSVVS---SSL-LIRTLSM---WVAVLG   95 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~-----p~~~i~~~yg~te~~~~~~~~~~~~~---~~~-~~~~~~~---~~~~~G   95 (174)
                      +..++.+.+||..++++..+.+++.+     .+..+++.||+||++.+....+....   ... ...+.++   ..+..|
T Consensus       333 ~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~~~~G  412 (614)
T PRK08180        333 FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPVGGKL  412 (614)
T ss_pred             ccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecCCCCc
Confidence            46789999999999999999998753     34789999999998754332211111   011 2222222   234679


Q ss_pred             eEEe--CcccccccCCcccccccccCCCeEecCCeeee------CCeEEEEeccCCeEEE-CcEEeC--hHHHHHHHhcC
Q 030653           96 SKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE------DSFLFIVDGLKDLVKY-KGCQVA--PAELEHLLLSH  164 (174)
Q Consensus        96 el~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~------dG~l~~~GR~~d~i~~-~G~~v~--p~eVE~~l~~~  164 (174)
                      ||++  |+++.|||++|+.|++.|+.+|||+|||+|++      ||+|+|+||++|+||+ +|++|+  |.|||.++..|
T Consensus       413 Ei~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~  492 (614)
T PRK08180        413 EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGA  492 (614)
T ss_pred             EEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcC
Confidence            9999  99999999999999999977899999999998      4789999999998885 798776  78999999999


Q ss_pred             CCcceEEEeC
Q 030653          165 PEMVDAAVIP  174 (174)
Q Consensus       165 ~~V~~~~Vvg  174 (174)
                      |.|.+|+|+|
T Consensus       493 p~V~~a~V~g  502 (614)
T PRK08180        493 PLVQDVVITG  502 (614)
T ss_pred             chhheEEEEc
Confidence            9999999986

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.89  E-value=9.4e-23  Score=176.70  Aligned_cols=141  Identities=22%  Similarity=0.304  Sum_probs=113.6

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc-------------CCcccccccccCcccccCCcCe
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL-------------PSVVSSSLLIRTLSMWVAVLGS   96 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Ge   96 (174)
                      .++.+..++  .++...+.+++.+ +..+++.||+||++.+....             +.......+..+.+++.+..||
T Consensus       295 ~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Ge  371 (542)
T PRK06155        295 RVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTHGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGE  371 (542)
T ss_pred             ceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCCCCCCCCCcCccCCCceEEEECCCCCCCCCCCceE
Confidence            455555443  5678888888876 57899999999987543321             1111122234455677788999


Q ss_pred             EEe--C---cccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcce
Q 030653           97 KFV--K---LISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVD  169 (174)
Q Consensus        97 l~v--~---~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~  169 (174)
                      |++  +   .++.||+++++.+...| .++||+|||+|++  ||+++|+||.+|+||++|++|+|.+||++|.++|+|.+
T Consensus       372 i~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~  450 (542)
T PRK06155        372 LLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAA  450 (542)
T ss_pred             EEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeE
Confidence            998  4   69999999999888887 5899999999999  99999999999999999999999999999999999999


Q ss_pred             EEEeC
Q 030653          170 AAVIP  174 (174)
Q Consensus       170 ~~Vvg  174 (174)
                      ++|+|
T Consensus       451 ~~v~~  455 (542)
T PRK06155        451 AAVFP  455 (542)
T ss_pred             EEEEe
Confidence            99974

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.89  E-value=1.2e-22  Score=175.34  Aligned_cols=146  Identities=22%  Similarity=0.193  Sum_probs=111.8

Q ss_pred             CccccceEEEcc-ccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC------------------Cccccccc-ccC
Q 030653           27 SLAFHSQIRTKS-QMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP------------------SVVSSSLL-IRT   86 (174)
Q Consensus        27 ~~~~~~~i~~~~-~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~------------------~~~~~~~~-~~~   86 (174)
                      .+..++.+..++ ........+.+.+.  ++++++.||+||++.+.....                  .......+ ..+
T Consensus       292 ~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~  369 (540)
T PRK06164        292 DFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDG  369 (540)
T ss_pred             CCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCC
Confidence            344455554444 33334444554443  688999999999865432211                  11111112 234


Q ss_pred             cccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHh
Q 030653           87 LSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLL  162 (174)
Q Consensus        87 ~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~  162 (174)
                      ..++.++.|||++  |+++.||+++++.|...|..++||+|||+|++  ||++++.||.+|+||++|++|+|.+||++|.
T Consensus       370 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~  449 (540)
T PRK06164        370 ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE  449 (540)
T ss_pred             cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHH
Confidence            4567788999999  99999999999999999988899999999999  9999999999999999999999999999999


Q ss_pred             cCCCcceEEEeC
Q 030653          163 SHPEMVDAAVIP  174 (174)
Q Consensus       163 ~~~~V~~~~Vvg  174 (174)
                      .+|+|.+++|+|
T Consensus       450 ~~~~v~~~~v~~  461 (540)
T PRK06164        450 ALPGVAAAQVVG  461 (540)
T ss_pred             hCCCceeEEEEe
Confidence            999999999875

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.89  E-value=7.3e-23  Score=178.34  Aligned_cols=144  Identities=22%  Similarity=0.254  Sum_probs=114.9

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC----------------------CcccccccccC
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP----------------------SVVSSSLLIRT   86 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~----------------------~~~~~~~~~~~   86 (174)
                      ..++.+..+|+.+++...+.+.+.+ +.++++.||+||++.+.....                      .......+. +
T Consensus       298 ~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g  375 (576)
T PRK05620        298 MSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-G  375 (576)
T ss_pred             CceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-C
Confidence            3588899999999999999998877 578999999999875432110                      000111111 2


Q ss_pred             ccc--ccCCcCeEEe--CcccccccCCcccc----------------cccccCCCeEecCCeeee--CCeEEEEeccCCe
Q 030653           87 LSM--WVAVLGSKFV--KLISAGYVGEQEVT----------------SATLLPDGWMRTGDLCYE--DSFLFIVDGLKDL  144 (174)
Q Consensus        87 ~~~--~~~~~Gel~v--~~v~~gY~~~~~~t----------------~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~  144 (174)
                      ..+  ..+..|||++  +.++.|||++++.+                ..++..++||+|||++++  ||+++|.||.+|+
T Consensus       376 ~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~  455 (576)
T PRK05620        376 QVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDV  455 (576)
T ss_pred             ccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhh
Confidence            222  2356899998  89999999999877                223445789999999999  9999999999999


Q ss_pred             EEECcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653          145 VKYKGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       145 i~~~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|++|+|.+||++|.+||.|.+++|+|
T Consensus       456 i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~  485 (576)
T PRK05620        456 IRSGGEWIYSAQLENYIMAAPEVVECAVIG  485 (576)
T ss_pred             hhcCCEEEcHHHHHHHHhcCCCceEEEEEe
Confidence            999999999999999999999999999985

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.89  E-value=5.6e-23  Score=176.72  Aligned_cols=146  Identities=24%  Similarity=0.319  Sum_probs=121.4

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec--------------------cCCcccccccccC
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL--------------------LPSVVSSSLLIRT   86 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~--------------------~~~~~~~~~~~~~   86 (174)
                      .+..++.+.++++.+++...+.+.+.++ ..+++.||+||++.+...                    .+.......+..+
T Consensus       279 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~  357 (524)
T PRK06188        279 DLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDG  357 (524)
T ss_pred             CCcceeEEEEcCCCCCHHHHHHHHHHhC-chhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCC
Confidence            4567889999999999999888888875 568899999998532221                    1222222223345


Q ss_pred             cccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHh
Q 030653           87 LSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLL  162 (174)
Q Consensus        87 ~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~  162 (174)
                      ..++.++.|||++  |.++.||++++..+...+ .+|||+|||++++  ||++++.||.+|+||++|++|+|.+||++|.
T Consensus       358 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~  436 (524)
T PRK06188        358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLA  436 (524)
T ss_pred             CCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHH
Confidence            5667788999999  999999999999888887 6899999999999  9999999999999999999999999999999


Q ss_pred             cCCCcceEEEeC
Q 030653          163 SHPEMVDAAVIP  174 (174)
Q Consensus       163 ~~~~V~~~~Vvg  174 (174)
                      .+++|.+++|+|
T Consensus       437 ~~~~v~~~~v~~  448 (524)
T PRK06188        437 EHPAVAQVAVIG  448 (524)
T ss_pred             hCCCeeEEEEEe
Confidence            999999999875

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.89  E-value=2.7e-22  Score=171.97  Aligned_cols=145  Identities=18%  Similarity=0.205  Sum_probs=119.2

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---------------CCcccccccccCcccccC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~~~~~~~~~~   92 (174)
                      +..++.+.++++.++++..+.+.+.++ +.+++.||+||++.+....               +.......+..+..++.+
T Consensus       270 ~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g  348 (509)
T PRK12406        270 VSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQG  348 (509)
T ss_pred             CCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCC
Confidence            467889999999999999999999774 7799999999987543322               111111223334566778


Q ss_pred             CcCeEEe--Ccccc-cccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           93 VLGSKFV--KLISA-GYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        93 ~~Gel~v--~~v~~-gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      ..|||++  ++++. +|+++++.++..+ .++||+|||++++  ||++++.||.||+||++|++|+|.+||++|..+|.|
T Consensus       349 ~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v  427 (509)
T PRK12406        349 EIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGV  427 (509)
T ss_pred             CceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCe
Confidence            8999998  66654 9999998877665 6899999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+++|+|
T Consensus       428 ~~~~v~~  434 (509)
T PRK12406        428 HDCAVFG  434 (509)
T ss_pred             eEEEEEe
Confidence            9999874

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.89  E-value=9.2e-23  Score=174.78  Aligned_cols=145  Identities=16%  Similarity=0.145  Sum_probs=121.1

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------CCcccccccccCcccccCC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------PSVVSSSLLIRTLSMWVAV   93 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~   93 (174)
                      ...++.+.++|+.+++.+.+.+++.+ +.++++.||+||++.+....              +.......+..+..++.+.
T Consensus       277 ~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~  355 (508)
T TIGR02262       277 QVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGE  355 (508)
T ss_pred             cccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCccCCCCCCcCCCCCCcEEEEECCCCCCCCCCC
Confidence            34678899999999999999999988 57899999999987543211              1111112233445567788


Q ss_pred             cCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcce
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVD  169 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~  169 (174)
                      .|||++  +.++.||+++++.++..| .++||+|||++++  ||.++++||.+|+||++|++|+|.+||++|.++++|.+
T Consensus       356 ~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~  434 (508)
T TIGR02262       356 PGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLE  434 (508)
T ss_pred             eeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeE
Confidence            999999  899999999999888877 5799999999999  99999999999999999999999999999999999999


Q ss_pred             EEEeC
Q 030653          170 AAVIP  174 (174)
Q Consensus       170 ~~Vvg  174 (174)
                      +++++
T Consensus       435 ~~~~~  439 (508)
T TIGR02262       435 AAVVG  439 (508)
T ss_pred             EEEEe
Confidence            99875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.88  E-value=2e-22  Score=172.97  Aligned_cols=145  Identities=18%  Similarity=0.202  Sum_probs=119.7

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCc--------------ccccccccCcccccCC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSV--------------VSSSLLIRTLSMWVAV   93 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~   93 (174)
                      +..++.+.++++.+++++.+.+++.+. ..+++.||+||++.+.......              .....+..+..++.++
T Consensus       274 ~~~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g~~~i~d~~~~~~~~g~  352 (511)
T PRK13391        274 LSSLEVAIHAAAPCPPQVKEQMIDWWG-PIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFGDLHILDDDGAELPPGE  352 (511)
T ss_pred             ccceeEEEEccCCCCHHHHHHHHHHcC-CceeeeeccccccceEEecCccccccCCCcCCcccceEEEECCCCCCCCCCC
Confidence            456888999999999999999998774 7899999999987543221110              0111233444566788


Q ss_pred             cCeEEe--CcccccccCCcccccccccCC-CeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcc
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLPD-GWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMV  168 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~~-g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~  168 (174)
                      .|||++  + ++.||+++++.+...+..+ +||+|||++++  ||+++|.||.+|++|++|++|+|.+||++|.+||.|.
T Consensus       353 ~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~  431 (511)
T PRK13391        353 PGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVA  431 (511)
T ss_pred             ceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcc
Confidence            999999  7 8999999999988887544 99999999999  9999999999999999999999999999999999999


Q ss_pred             eEEEeC
Q 030653          169 DAAVIP  174 (174)
Q Consensus       169 ~~~Vvg  174 (174)
                      +++|+|
T Consensus       432 ~~~v~~  437 (511)
T PRK13391        432 DAAVFG  437 (511)
T ss_pred             eEEEEe
Confidence            999874

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.88  E-value=2.5e-22  Score=172.09  Aligned_cols=148  Identities=20%  Similarity=0.106  Sum_probs=120.7

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------CCcccccccccCcccccC
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------PSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------~~~~~~~~~~~~~~~~~~   92 (174)
                      .+..++.+.++|+.++..+.+.+.+.+|+..+++.||+||++.+....              +.......+.++..++.+
T Consensus       294 ~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~g  373 (533)
T PRK07798        294 DLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPG  373 (533)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCCCccCCCCccCCCceEEEECCCCCCCCCC
Confidence            345788999999999999999999999999999999999986443211              111111123334455555


Q ss_pred             Cc--CeEEe-CcccccccCCccccccccc---CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653           93 VL--GSKFV-KLISAGYVGEQEVTSATLL---PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus        93 ~~--Gel~v-~~v~~gY~~~~~~t~~~~~---~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      ..  |+++. +.++.||+++++.++..|.   ..+||+|||++++  ||+++++||.||+||.+|++|+|.+||++|.++
T Consensus       374 ~~~~g~l~~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~  453 (533)
T PRK07798        374 SGEIGWIARRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAH  453 (533)
T ss_pred             CCCeeEEEeecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhC
Confidence            55  77777 8899999999999888873   2469999999999  999999999999999999999999999999999


Q ss_pred             CCcceEEEeC
Q 030653          165 PEMVDAAVIP  174 (174)
Q Consensus       165 ~~V~~~~Vvg  174 (174)
                      |.|.+++|+|
T Consensus       454 ~~v~~~~v~~  463 (533)
T PRK07798        454 PDVADALVVG  463 (533)
T ss_pred             ccceeEEEEe
Confidence            9999999875

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=1.2e-22  Score=173.78  Aligned_cols=146  Identities=21%  Similarity=0.283  Sum_probs=122.1

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCc--------------ccccccccCcccccCC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSV--------------VSSSLLIRTLSMWVAV   93 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~   93 (174)
                      +..++.+.++++.++....+.+.+.+ +..+++.||+||++.+.......              .....+..+..++.++
T Consensus       261 ~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~i~d~~~~~~~~g~  339 (502)
T PRK08276        261 VSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAVLGEVRILDEDGNELPPGE  339 (502)
T ss_pred             cccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecCccccccCCCcceecccEEEEECCCCCCCcCCC
Confidence            46789999999999999999999987 46788999999987532221110              1111233345667788


Q ss_pred             cCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcce
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVD  169 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~  169 (174)
                      .|||++  +.++.||+++++.+...+..++||+|||++++  ||.+++.||.||+||++|++|+|.+||.+|.++|+|.+
T Consensus       340 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~  419 (502)
T PRK08276        340 IGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVAD  419 (502)
T ss_pred             ceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcce
Confidence            999999  89999999999999998876799999999999  99999999999999999999999999999999999999


Q ss_pred             EEEeC
Q 030653          170 AAVIP  174 (174)
Q Consensus       170 ~~Vvg  174 (174)
                      ++|++
T Consensus       420 ~~v~~  424 (502)
T PRK08276        420 VAVFG  424 (502)
T ss_pred             EEEEe
Confidence            99874

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.88  E-value=2e-23  Score=171.25  Aligned_cols=151  Identities=21%  Similarity=0.281  Sum_probs=131.8

Q ss_pred             cccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee---------------ec-cCCcccccccccC
Q 030653           23 FLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH---------------SL-LPSVVSSSLLIRT   86 (174)
Q Consensus        23 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~---------------~~-~~~~~~~~~~~~~   86 (174)
                      +-...+++++.+..||..+++...+++.+.+ +.++-+.+|+.|.-.+.               ++ .|.+...+.+.++
T Consensus       299 ~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg  377 (542)
T COG1021         299 WERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADG  377 (542)
T ss_pred             cccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCC
Confidence            3456778899999999999999999999887 46777788888865322               11 2344445558889


Q ss_pred             cccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHh
Q 030653           87 LSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLL  162 (174)
Q Consensus        87 ~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~  162 (174)
                      ++++.|+.|+|..  |--++||++.|+..+.+|+.+|+|+|||++++  ||+|.+.||.+|+||.+|+||..+|||+.|.
T Consensus       378 ~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL  457 (542)
T COG1021         378 NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLL  457 (542)
T ss_pred             CCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHh
Confidence            9999999999998  99999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             cCCCcceEEEeC
Q 030653          163 SHPEMVDAAVIP  174 (174)
Q Consensus       163 ~~~~V~~~~Vvg  174 (174)
                      .||.|.+|++|+
T Consensus       458 ~HP~V~~AAlVa  469 (542)
T COG1021         458 RHPAVHDAALVA  469 (542)
T ss_pred             hCchhhhhhhhc
Confidence            999999999874

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.88  E-value=3.4e-22  Score=173.60  Aligned_cols=146  Identities=24%  Similarity=0.325  Sum_probs=114.7

Q ss_pred             ccccceEEEcc--ccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---------------------cCCccccccc-
Q 030653           28 LAFHSQIRTKS--QMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---------------------LPSVVSSSLL-   83 (174)
Q Consensus        28 ~~~~~~i~~~~--~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---------------------~~~~~~~~~~-   83 (174)
                      +..++.+...+  ..+++...+.+++.++...+...||+||++.+...                     .++......+ 
T Consensus       324 l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~  403 (567)
T PRK06178        324 LSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDF  403 (567)
T ss_pred             cchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcC
Confidence            34455554443  67788888999988875544557999997643211                     1111112222 


Q ss_pred             ccCcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           84 IRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        84 ~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      ..+..++.++.|||++  |+++.||+++++.++..+ .+|||+|||++++  ||+++|+||++|+||++|++|+|.+||+
T Consensus       404 ~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~  482 (567)
T PRK06178        404 ETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEA  482 (567)
T ss_pred             CCCCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHH
Confidence            2345667788999999  999999999999888877 5789999999999  9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      ++..++.|.+++|+|
T Consensus       483 ~l~~~~~v~~~~v~~  497 (567)
T PRK06178        483 LLGQHPAVLGSAVVG  497 (567)
T ss_pred             HHHhCCCeeEEEEEc
Confidence            999999999999875

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=1.9e-22  Score=174.43  Aligned_cols=143  Identities=20%  Similarity=0.250  Sum_probs=114.2

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc-------------------------CCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL-------------------------PSVVSSS   81 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~-------------------------~~~~~~~   81 (174)
                      .+..++.+.++|+.+++...+.+.+.+ +..+++.||+||++......                         |......
T Consensus       291 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i  369 (539)
T PRK07008        291 RFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKI  369 (539)
T ss_pred             CcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEE
Confidence            345688999999999999999998887 58999999999987432211                         1111111


Q ss_pred             ccccCccccc--CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChH
Q 030653           82 LLIRTLSMWV--AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPA  155 (174)
Q Consensus        82 ~~~~~~~~~~--~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~  155 (174)
                      .+.++..++.  ++.|||++  ++++.||++++.   ..+ .+|||+|||++++  ||++++.||.+|+||++|++|+|.
T Consensus       370 ~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~  445 (539)
T PRK07008        370 VGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSI  445 (539)
T ss_pred             ECCCCCccCCCCCcceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHH
Confidence            2223333443  25799999  999999999883   334 3789999999999  999999999999999999999999


Q ss_pred             HHHHHHhcCCCcceEEEeC
Q 030653          156 ELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       156 eVE~~l~~~~~V~~~~Vvg  174 (174)
                      +||++|..+|.|.+++|+|
T Consensus       446 eIE~~l~~~p~v~~~~v~~  464 (539)
T PRK07008        446 DIENVAVAHPAVAEAACIA  464 (539)
T ss_pred             HHHHHHHhCCceeEEEEEe
Confidence            9999999999999999875

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.88  E-value=4.4e-22  Score=171.15  Aligned_cols=143  Identities=23%  Similarity=0.231  Sum_probs=116.8

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC---------------CcccccccccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP---------------SVVSSSLLIRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~---------------~~~~~~~~~~~~~~~~   91 (174)
                      .+..++.+.++|+.++++..+.+.+.++ ..+++.||+||++.+....+               .......+..+..++.
T Consensus       290 ~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~  368 (516)
T PRK13383        290 PLPQLRVVMSSGDRLDPTLGQRFMDTYG-DILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGP  368 (516)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHcC-chhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCC
Confidence            3567899999999999999999999885 67999999999874432211               1111122334456667


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      ++.|||++  +.++.+|++++.   ..+ .+|||+|||++++  ||++++.||.+|+||++|++|+|.+||++|.+||.|
T Consensus       369 g~~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v  444 (516)
T PRK13383        369 RVTGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAV  444 (516)
T ss_pred             CCceEEEEecCcccccccCCch---hhe-ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCe
Confidence            88999998  899999998764   223 4799999999999  899999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+++|++
T Consensus       445 ~~~~vv~  451 (516)
T PRK13383        445 ADNAVIG  451 (516)
T ss_pred             eEEEEEe
Confidence            9999875

>PLN02479 acetate-CoA ligase

Probab=99.88  E-value=3.7e-22  Score=173.77  Aligned_cols=144  Identities=18%  Similarity=0.309  Sum_probs=114.8

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-c--c------CC-------cc----------ccc
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-L--L------PS-------VV----------SSS   81 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-~--~------~~-------~~----------~~~   81 (174)
                      +..++.+.++|+.+++...+.+.+.  +..+++.||+||+..... .  .      +.       ..          ...
T Consensus       309 ~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i  386 (567)
T PLN02479        309 LPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV  386 (567)
T ss_pred             ccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeE
Confidence            4567788999999999999988774  678999999999742111 0  0      00       00          011


Q ss_pred             cc-ccCcccccC--CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeCh
Q 030653           82 LL-IRTLSMWVA--VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAP  154 (174)
Q Consensus        82 ~~-~~~~~~~~~--~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p  154 (174)
                      .+ ..+..++.+  +.|||++  ++++.|||++++.+++.| .++||+|||++++  ||+++|+||.||+||++|++|+|
T Consensus       387 ~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~  465 (567)
T PLN02479        387 VDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISS  465 (567)
T ss_pred             EcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcH
Confidence            11 122333332  5799999  899999999999999988 5899999999999  99999999999999999999999


Q ss_pred             HHHHHHHhcCCCcceEEEeC
Q 030653          155 AELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       155 ~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      .+||++|..||.|.+++|+|
T Consensus       466 ~eIE~~l~~~~~v~~~~v~~  485 (567)
T PLN02479        466 LEVENVVYTHPAVLEASVVA  485 (567)
T ss_pred             HHHHHHHHhCcccceeeEEe
Confidence            99999999999999999985

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.88  E-value=2.7e-22  Score=173.77  Aligned_cols=138  Identities=18%  Similarity=0.235  Sum_probs=107.2

Q ss_pred             EEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcc----------cccc-------------cccCccc-
Q 030653           34 IRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVV----------SSSL-------------LIRTLSM-   89 (174)
Q Consensus        34 i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~----------~~~~-------------~~~~~~~-   89 (174)
                      +..|+ .+.+...+.+.+.+ +.++++.||+||++.+....+...          ....             +..+..+ 
T Consensus       269 ~~~G~-~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~  346 (540)
T PRK13388        269 VAFGN-EASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREPGTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLN  346 (540)
T ss_pred             EEECC-CCCHHHHHHHHHHh-CCceecccccccccceeecCCCCCCCCCCCCCCCcEEEcCCCCccccceeccCcccccc
Confidence            33444 45677888888877 578999999999875443221100          0000             1111111 


Q ss_pred             ccCCcCeEEe---CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653           90 WVAVLGSKFV---KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus        90 ~~~~~Gel~v---~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      +.+..|||++   ++++.||+++|+.+++.| .+|||+|||+|++  ||+++++||.+|+||++|++|+|.+||++|.+|
T Consensus       347 ~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~  425 (540)
T PRK13388        347 ADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRH  425 (540)
T ss_pred             CCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhC
Confidence            2246899987   789999999999998888 5899999999999  999999999999999999999999999999999


Q ss_pred             CCcceEEEeC
Q 030653          165 PEMVDAAVIP  174 (174)
Q Consensus       165 ~~V~~~~Vvg  174 (174)
                      |.|.+|+|+|
T Consensus       426 ~~V~~~~v~g  435 (540)
T PRK13388        426 PAINRVAVYA  435 (540)
T ss_pred             CCceEEEEEE
Confidence            9999999985

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.88  E-value=2.6e-22  Score=173.63  Aligned_cols=138  Identities=17%  Similarity=0.194  Sum_probs=107.6

Q ss_pred             EEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcc----------ccccc-ccCcccccCC---------
Q 030653           34 IRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVV----------SSSLL-IRTLSMWVAV---------   93 (174)
Q Consensus        34 i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~---------   93 (174)
                      +..|+...++ .++.+.+.+ ++.+++.||+||++.+....+...          ...++ ..+..++.++         
T Consensus       271 ~~~gg~~~~~-~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~  348 (529)
T PRK07867        271 IVYGNEGAPG-DIARFARRF-GCVVVDGFGSTEGGVAITRTPDTPPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNA  348 (529)
T ss_pred             EEecCCCChH-HHHHHHHHh-CCcEEEeecccccccccccCCCCCCCCcCCCCCCEEEEECCCCCCCCCCcccccccccc
Confidence            4456666554 467777777 578999999999864332211100          11111 1233455555         


Q ss_pred             ---cCeEEe---CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           94 ---LGSKFV---KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        94 ---~Gel~v---~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                         .|||++   |+++.||+++++.+.+.+ .+|||+|||++++  ||+++|.||.||+||++|++|+|.+||++|.+||
T Consensus       349 ~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p  427 (529)
T PRK07867        349 DEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYP  427 (529)
T ss_pred             CCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCC
Confidence               899986   889999999999988888 5899999999999  9999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      +|.+++|+|
T Consensus       428 ~V~~~~V~g  436 (529)
T PRK07867        428 DATEVAVYA  436 (529)
T ss_pred             CeeEEEEEe
Confidence            999999985

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.88  E-value=5.6e-22  Score=184.48  Aligned_cols=147  Identities=16%  Similarity=0.183  Sum_probs=114.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCccc---ccc-cccCcc-----c-ccCCcCe
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVS---SSL-LIRTLS-----M-WVAVLGS   96 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~---~~~-~~~~~~-----~-~~~~~Ge   96 (174)
                      .+..++.+.+|++.+++...+.+.+.+ +.++++.||+||++......+....   ... +..+.+     . +.++.||
T Consensus       905 ~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~~~~~Ge  983 (1140)
T PRK06814        905 DFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGR  983 (1140)
T ss_pred             cccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecCCCCCceE
Confidence            456789999999999999999998887 5789999999998754332211110   000 111111     1 1357799


Q ss_pred             EEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEE
Q 030653           97 KFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAV  172 (174)
Q Consensus        97 l~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~V  172 (174)
                      |++  ++++.||+++++........+|||+|||++++  ||+++++||.||+||++|++|+|.|||++|.+|+.+.+++|
T Consensus       984 l~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v 1063 (1140)
T PRK06814        984 LFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAA 1063 (1140)
T ss_pred             EEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEE
Confidence            999  99999999977543222235899999999999  99999999999999999999999999999999999999988


Q ss_pred             eC
Q 030653          173 IP  174 (174)
Q Consensus       173 vg  174 (174)
                      ++
T Consensus      1064 v~ 1065 (1140)
T PRK06814       1064 VS 1065 (1140)
T ss_pred             EE
Confidence            74

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.88  E-value=5.4e-22  Score=173.67  Aligned_cols=137  Identities=20%  Similarity=0.226  Sum_probs=107.8

Q ss_pred             ccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-----------cC----Ccccc------c--c-ccc--Ccccc
Q 030653           37 KSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-----------LP----SVVSS------S--L-LIR--TLSMW   90 (174)
Q Consensus        37 ~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-----------~~----~~~~~------~--~-~~~--~~~~~   90 (174)
                      .+..+++...+.+.+.++...+++.||+||++.+...           .+    .....      .  + +..  ...++
T Consensus       320 ~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  399 (600)
T PRK08279        320 IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVK  399 (600)
T ss_pred             ecCCCCHHHHHHHHHHhCcceeeeeecccccceeecccCCCCcccccccccccccceeeeeccCcCceeeCCCCccccCC
Confidence            3566889999999999998889999999997643211           11    00000      0  0 001  12456


Q ss_pred             cCCcCeEE--e--CcccccccCCccccccccc------CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHH
Q 030653           91 VAVLGSKF--V--KLISAGYVGEQEVTSATLL------PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELE  158 (174)
Q Consensus        91 ~~~~Gel~--v--~~v~~gY~~~~~~t~~~~~------~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE  158 (174)
                      .++.||++  +  ++++.|| ++++.+...+.      .++||+|||+|++  ||+|++.||.||+||++|++|+|.|||
T Consensus       400 ~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE  478 (600)
T PRK08279        400 PGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVE  478 (600)
T ss_pred             CCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHH
Confidence            67889997  4  8999999 88888877652      3589999999999  999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEeC
Q 030653          159 HLLLSHPEMVDAAVIP  174 (174)
Q Consensus       159 ~~l~~~~~V~~~~Vvg  174 (174)
                      ++|.+||+|.+|+|+|
T Consensus       479 ~~l~~~p~V~~a~v~g  494 (600)
T PRK08279        479 NALSGFPGVEEAVVYG  494 (600)
T ss_pred             HHHhcCCCcceEEEEE
Confidence            9999999999999875

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.87  E-value=3.3e-22  Score=170.65  Aligned_cols=147  Identities=25%  Similarity=0.364  Sum_probs=122.9

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------------CCccccccccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------------PSVVSSSLLIR   85 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------------~~~~~~~~~~~   85 (174)
                      ..+..++.+.++|+.++....+.+.+.+ ++++++.||+||++.+....                    +.......+.+
T Consensus       278 ~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~  356 (521)
T PRK06187        278 VDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDD  356 (521)
T ss_pred             cCcchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCC
Confidence            3456789999999999999999999988 88999999999987543221                    11111122334


Q ss_pred             Cccccc--CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           86 TLSMWV--AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        86 ~~~~~~--~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      +..++.  ++.|||++  +.++.||+++++.+...+ .++||+|||++++  ||++++.||.+|+||++|.+|+|.+||+
T Consensus       357 ~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~  435 (521)
T PRK06187        357 GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELED  435 (521)
T ss_pred             CCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHH
Confidence            445666  88999999  999999999999888877 5779999999999  9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      +|.++++|.+++|++
T Consensus       436 ~l~~~~~v~~~~v~~  450 (521)
T PRK06187        436 ALYGHPAVAEVAVIG  450 (521)
T ss_pred             HHHhCCCceEEEEEe
Confidence            999999999999874

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.87  E-value=4.2e-22  Score=173.22  Aligned_cols=154  Identities=16%  Similarity=0.131  Sum_probs=124.1

Q ss_pred             cccccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-c-------cCCcc--------cccccc
Q 030653           21 KIFLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-L-------LPSVV--------SSSLLI   84 (174)
Q Consensus        21 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-~-------~~~~~--------~~~~~~   84 (174)
                      +...+....+++.+.+.|++..++..+-+.+.+..-.|++.|+.||++.... +       .|...        ..+.+.
T Consensus       351 ~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de  430 (626)
T KOG1175|consen  351 EDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDE  430 (626)
T ss_pred             ccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECC
Confidence            3334444478999999999999999999998886546899999999874211 1       11111        222344


Q ss_pred             cCcccccC-CcCeEEe----C-cccccccCCcccccccccC--CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeCh
Q 030653           85 RTLSMWVA-VLGSKFV----K-LISAGYVGEQEVTSATLLP--DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAP  154 (174)
Q Consensus        85 ~~~~~~~~-~~Gel~v----~-~v~~gY~~~~~~t~~~~~~--~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p  154 (174)
                      .+.+++.. +.|+|.+    | +.+++||+|+++...++..  .|+|.|||.+++  ||++|++||.||+||++|.|+++
T Consensus       431 ~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigt  510 (626)
T KOG1175|consen  431 NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGT  510 (626)
T ss_pred             CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecH
Confidence            56666554 8899987    5 9999999999966666544  899999999999  99999999999999999999999


Q ss_pred             HHHHHHHhcCCCcceEEEeC
Q 030653          155 AELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       155 ~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      .|||+++.+||.|.|++|||
T Consensus       511 aEIE~al~~hp~VaEsAvVg  530 (626)
T KOG1175|consen  511 AEIESALVEHPAVAESAVVG  530 (626)
T ss_pred             HHHHHHHhhCcchhheeeec
Confidence            99999999999999999997

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.87  E-value=1.5e-21  Score=168.77  Aligned_cols=146  Identities=15%  Similarity=0.221  Sum_probs=114.7

Q ss_pred             CccccceEEEccccCChhhHHHHHhh-----CCCCeEEcCCCCCcceeeeec----------------------------
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHT-----LPTRRLLLPSVLSSSSTCHSL----------------------------   73 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~-----~p~~~i~~~yg~te~~~~~~~----------------------------   73 (174)
                      .+..++.+.++++.+++...+.+.+.     +|...+++.||+||++.....                            
T Consensus       274 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (545)
T PRK07768        274 DLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATK  353 (545)
T ss_pred             CchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCC
Confidence            34578899999999999999988774     344579999999998643211                            


Q ss_pred             ------------cCCcccccccccCcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEE
Q 030653           74 ------------LPSVVSSSLLIRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFI  137 (174)
Q Consensus        74 ------------~~~~~~~~~~~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~  137 (174)
                                  .+.......+.++..++.++.|||++  +.+++||++++... .....++||+|||++++  ||++++
T Consensus       354 ~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~~g~l~~  432 (545)
T PRK07768        354 GNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFI-PAQDADGWLDTGDLGYLTEEGEVVV  432 (545)
T ss_pred             CCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCc-ccccCCCeeeccceEEEecCCEEEE
Confidence                        11111122233455666778899999  89999999865433 33346789999999999  799999


Q ss_pred             EeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEe
Q 030653          138 VDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI  173 (174)
Q Consensus       138 ~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vv  173 (174)
                      +||.+|+||++|++|+|.+||++|.++|+|.+++|+
T Consensus       433 ~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv  468 (545)
T PRK07768        433 CGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAV  468 (545)
T ss_pred             EccccceEEECCEecCHHHHHHHHHhCcccccceEE
Confidence            999999999999999999999999999999997765

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.86  E-value=1.7e-21  Score=168.23  Aligned_cols=143  Identities=20%  Similarity=0.264  Sum_probs=111.9

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCccee-eeeccCC-------------------c------ccccc
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSST-CHSLLPS-------------------V------VSSSL   82 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~-~~~~~~~-------------------~------~~~~~   82 (174)
                      .....+.+++........+.+++.  ++++++.||+||++. +......                   .      .....
T Consensus       296 ~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~  373 (545)
T PRK08162        296 DHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVL  373 (545)
T ss_pred             ccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEE
Confidence            345667788888888888888764  689999999999742 1111000                   0      00001


Q ss_pred             c-ccCccccc-C-CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChH
Q 030653           83 L-IRTLSMWV-A-VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPA  155 (174)
Q Consensus        83 ~-~~~~~~~~-~-~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~  155 (174)
                      + ..+..++. + +.|||++  +.++.||+++++.+...| .++||+|||++++  ||+++++||.||+||++|++|+|.
T Consensus       374 d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~  452 (545)
T PRK08162        374 DPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSI  452 (545)
T ss_pred             cCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHH
Confidence            1 12223333 2 4699999  999999999999998888 5799999999999  999999999999999999999999


Q ss_pred             HHHHHHhcCCCcceEEEeC
Q 030653          156 ELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       156 eVE~~l~~~~~V~~~~Vvg  174 (174)
                      +||++|.++|.|.+++|++
T Consensus       453 eIE~~l~~~~~v~~~~vv~  471 (545)
T PRK08162        453 EVEDVLYRHPAVLVAAVVA  471 (545)
T ss_pred             HHHHHHHhCCcccEEEEEe
Confidence            9999999999999999875

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.86  E-value=3.2e-21  Score=166.82  Aligned_cols=142  Identities=21%  Similarity=0.221  Sum_probs=113.1

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc---C----------------------Ccccccc
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL---P----------------------SVVSSSL   82 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~---~----------------------~~~~~~~   82 (174)
                      +..++.+.++|+.+++.+.+.+++  .++.+++.||+||++.+....   +                      .......
T Consensus       293 ~~~lr~~~~~G~~l~~~~~~~~~~--~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~  370 (542)
T PRK06018        293 LPHLKMVVCGGSAMPRSMIKAFED--MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKIT  370 (542)
T ss_pred             cccceEEEEcCCCCCHHHHHHHHH--hCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEE
Confidence            356889999999999999999999  578999999999987543221   0                      0001111


Q ss_pred             cccCccccc--CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           83 LIRTLSMWV--AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        83 ~~~~~~~~~--~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      +..+..++.  ...|||++  ++++.|||++   +...++.++||+|||++++  ||++++.||.+|+||++|++|+|.+
T Consensus       371 d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~e  447 (542)
T PRK06018        371 DDAGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSID  447 (542)
T ss_pred             CCCCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHH
Confidence            223333433  25799998  9999999983   2344556899999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||+++..||.|.+|+|+|
T Consensus       448 IE~~l~~~~~v~~~~v~~  465 (542)
T PRK06018        448 LENLAVGHPKVAEAAVIG  465 (542)
T ss_pred             HHHHHHhCCcceeEEEEe
Confidence            999999999999999985

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.86  E-value=3.3e-21  Score=161.70  Aligned_cols=143  Identities=20%  Similarity=0.280  Sum_probs=112.1

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcccc----c-ccccCccc-----ccCCcCeEE
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSS----S-LLIRTLSM-----WVAVLGSKF   98 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~~----~-~~~~~~~~-----~~~~~Gel~   98 (174)
                      ..++.+.++++.+++...+.+++.  +..+++.||+||++............    . .+..+.++     +..+.|||+
T Consensus       219 ~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~  296 (436)
T TIGR01923       219 ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIM  296 (436)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCCCCceEEE
Confidence            468889999999999999887763  78999999999986432211110000    0 01111111     112669999


Q ss_pred             e--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653           99 V--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus        99 v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      +  +.++.||+++++.+...+ .++||+|||++++  ||++++.||.+|+||++|++|+|.+||++|..++.|.+++|++
T Consensus       297 v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  375 (436)
T TIGR01923       297 VKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVP  375 (436)
T ss_pred             EECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeC
Confidence            9  899999999887776655 5799999999999  8999999999999999999999999999999999999999875

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.86  E-value=1.3e-21  Score=180.42  Aligned_cols=140  Identities=12%  Similarity=0.046  Sum_probs=103.8

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceee------------eeccCCc-cccc-----------cccc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTC------------HSLLPSV-VSSS-----------LLIR   85 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~------------~~~~~~~-~~~~-----------~~~~   85 (174)
                      .++.+. ++ .+++++.+++.+.+|++.+++.||+||++..            +.+.+.. ....           ++.+
T Consensus       721 slr~~~-g~-gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~  798 (994)
T PRK07868        721 PVRLFI-GS-GMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANVSGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDR  798 (994)
T ss_pred             ceEEEe-cC-CCCHHHHHHHHHHhCchheeeeeecccccccccccCCCCCcccCCccCCCCceeEEEecCcCCceeecCC
Confidence            455555 33 3889999999999999999999999997532            2223322 1100           0122


Q ss_pred             C--cccccCCcCeEEeCcccccccCCcccccc--ccc-CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHH
Q 030653           86 T--LSMWVAVLGSKFVKLISAGYVGEQEVTSA--TLL-PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELE  158 (174)
Q Consensus        86 ~--~~~~~~~~Gel~v~~v~~gY~~~~~~t~~--~~~-~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE  158 (174)
                      +  .+++.++.|||++.+  .+|+ +|+.+..  .|. .+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||
T Consensus       799 G~~~~~~~ge~Gel~~~~--~~~~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE  875 (994)
T PRK07868        799 GFVRRAEVNEVGVLLARA--RGPI-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVT  875 (994)
T ss_pred             ceEEEcCCCCceEEEEec--CCCC-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHH
Confidence            3  345668899998721  1234 4544322  242 4799999999999  999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEeC
Q 030653          159 HLLLSHPEMVDAAVIP  174 (174)
Q Consensus       159 ~~l~~~~~V~~~~Vvg  174 (174)
                      ++|.+||.|.+|+|+|
T Consensus       876 ~~L~~hp~V~~aaVvg  891 (994)
T PRK07868        876 DALGRIGGVDLAVTYG  891 (994)
T ss_pred             HHHhcCCCeeEEEEEe
Confidence            9999999999999986

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.84  E-value=2.1e-20  Score=167.72  Aligned_cols=147  Identities=10%  Similarity=-0.028  Sum_probs=110.3

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee---------------ccCCcccccccccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS---------------LLPSVVSSSLLIRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~---------------~~~~~~~~~~~~~~~~~~~   91 (174)
                      .+..++.+.++|+.++++....+.+.++...+.+.||.||++.+..               +.+.......+..+..++.
T Consensus       469 dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~  548 (728)
T PLN03052        469 DWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPD  548 (728)
T ss_pred             ChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCC
Confidence            4567899999999999888777777766567899999999864321               1112222223445556666


Q ss_pred             CC--cCeEEe-C---cccccccCCccccccccc------CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHH
Q 030653           92 AV--LGSKFV-K---LISAGYVGEQEVTSATLL------PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAEL  157 (174)
Q Consensus        92 ~~--~Gel~v-~---~v~~gY~~~~~~t~~~~~------~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eV  157 (174)
                      ++  .|||++ |   +...+|+++. .+...|.      .+.||+|||++++  ||+++|+||.||+||++|+||+|.||
T Consensus       549 g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EI  627 (728)
T PLN03052        549 DAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEI  627 (728)
T ss_pred             CCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHH
Confidence            64  699998 4   3345677764 2333331      2239999999999  99999999999999999999999999


Q ss_pred             HHHHh-cCCCcceEEEeC
Q 030653          158 EHLLL-SHPEMVDAAVIP  174 (174)
Q Consensus       158 E~~l~-~~~~V~~~~Vvg  174 (174)
                      |++|. .||.|.|++|+|
T Consensus       628 E~~l~~~~p~V~eaaVvg  645 (728)
T PLN03052        628 ERVCNAADESVLETAAIG  645 (728)
T ss_pred             HHHHHhcCCCcceEEEEe
Confidence            99995 799999999986

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.84  E-value=7e-21  Score=161.34  Aligned_cols=143  Identities=22%  Similarity=0.237  Sum_probs=114.1

Q ss_pred             cceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC-Ccc-------------cccccc-cCcccccC--C
Q 030653           31 HSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP-SVV-------------SSSLLI-RTLSMWVA--V   93 (174)
Q Consensus        31 ~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~-~~~-------------~~~~~~-~~~~~~~~--~   93 (174)
                      ++++.+||.++++++-+.+.-.+ .+.+.+-||.||+...+.+.. ...             ...++. +++-...+  .
T Consensus       404 lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PP  482 (678)
T KOG1180|consen  404 LRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPP  482 (678)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCC
Confidence            78999999999999988877765 457788999999763333221 111             111111 11211111  4


Q ss_pred             cCeEEe--CcccccccCCcccccccccC-CC--eEecCCeeee--CCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCC
Q 030653           94 LGSKFV--KLISAGYVGEQEVTSATLLP-DG--WMRTGDLCYE--DSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        94 ~Gel~v--~~v~~gY~~~~~~t~~~~~~-~g--~~~TGD~g~~--dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~  165 (174)
                      .|||++  +++..||++++++|++.|.. +|  ||+|||+|++  ||.|.|++|++|.+|+ +|+.|+++.||.++...|
T Consensus       483 rGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p  562 (678)
T KOG1180|consen  483 RGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSP  562 (678)
T ss_pred             CceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCc
Confidence            799999  99999999999999999966 78  9999999999  9999999999999999 999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      .|...+|++
T Consensus       563 ~V~NICvyA  571 (678)
T KOG1180|consen  563 YVDNICVYA  571 (678)
T ss_pred             chhheEEec
Confidence            999998875

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.81  E-value=3.5e-20  Score=154.64  Aligned_cols=122  Identities=18%  Similarity=0.287  Sum_probs=100.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------CCccccccccc-Cccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIR-TLSM   89 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~-~~~~   89 (174)
                      .+..++.+.++++.++++..+++++.++.+.+++.||+||++.+....                +......++.+ +..+
T Consensus       275 ~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~  354 (417)
T PF00501_consen  275 DLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPL  354 (417)
T ss_dssp             TGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBE
T ss_pred             ccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccc
Confidence            566789999999999999999999999989999999999998766533                11111222333 5566


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEEC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYK  148 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~  148 (174)
                      +.++.|||++  |.++.||+++|+.+++.|..+|||+|||+|++  ||+++++||+||+||++
T Consensus       355 ~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  355 PPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             STTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            7789999999  99999999999999999976689999999999  89999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.76  E-value=5.5e-18  Score=142.21  Aligned_cols=126  Identities=17%  Similarity=0.143  Sum_probs=93.6

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCccc-cc-ccccCcccc----cCCcCeEEeCccc
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVS-SS-LLIRTLSMW----VAVLGSKFVKLIS  103 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~-~~-~~~~~~~~~----~~~~Gel~v~~v~  103 (174)
                      .++.+.++|+.+++...+++++..  .++++.||+||++.+......... .. .+..+.++.    .+..||+++.   
T Consensus       213 ~l~~~~~~G~~l~~~~~~~~~~~~--~~~~~~YG~tE~~~~~~~~~~~~~~~~G~p~~~~~~~~~~~~~~~gel~v~---  287 (414)
T PRK08308        213 QFHAVMTSGTPLPEAWFYKLRERT--TYMMQQYGCSEAGCVSICPDMKSHLDLGNPLPHVSVSAGSDENAPEEIVVK---  287 (414)
T ss_pred             cccEEEEccCCCCHHHHHHHHHhC--ChhhhccCccccCCeeecCCCCCCCccCccCCCeEEEEecCCCCCceEEEE---
Confidence            467888999999999999998863  589999999998743321110000 00 011111111    2345666541   


Q ss_pred             ccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653          104 AGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       104 ~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                                    ..++||+|||++++  ||+++++||.||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus       288 --------------~~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~  346 (414)
T PRK08308        288 --------------MGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYR  346 (414)
T ss_pred             --------------cCCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence                          13689999999999  8999999999999999999999999999999999999998874

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.66  E-value=6.5e-16  Score=130.39  Aligned_cols=128  Identities=16%  Similarity=0.055  Sum_probs=97.7

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcce--eee-ecc---CCcc-------ccccc-ccCcccccCCc
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSS--TCH-SLL---PSVV-------SSSLL-IRTLSMWVAVL   94 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~--~~~-~~~---~~~~-------~~~~~-~~~~~~~~~~~   94 (174)
                      ..++.|+++|+.++++..+.+.+.| ++++++.||+||++  .+. .+.   ....       ...++ ..+..++.++.
T Consensus       195 ~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~  273 (422)
T TIGR02155       195 TSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSEVIGPGVAMECVETQDGLHIWEDHFYPEIIDPHTGEVLPDGEE  273 (422)
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccchhhcCCceeecccccCCCceEecCeeEEEEECCCCCCCCCCCCe
Confidence            3578899999999999999999988 47899999999973  121 110   1111       11223 24556777899


Q ss_pred             CeEEeCcccccccCCcccccccccCCCeEecCCeeee-C--C-----eEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           95 GSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-D--S-----FLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        95 Gel~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-d--G-----~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      |||++.+.          +...+ ..+||+|||++++ +  |     .+++.||.+|+|+++|.+|+|.+||++|..||.
T Consensus       274 Gelvvt~~----------~~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~  342 (422)
T TIGR02155       274 GELVFTTL----------TKEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDE  342 (422)
T ss_pred             eEEEEecC----------Ccccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcC
Confidence            99987432          22333 4679999999999 4  4     478999999999999999999999999999999


Q ss_pred             cc
Q 030653          167 MV  168 (174)
Q Consensus       167 V~  168 (174)
                      |.
T Consensus       343 v~  344 (422)
T TIGR02155       343 LS  344 (422)
T ss_pred             cC
Confidence            97

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.64  E-value=9.5e-16  Score=135.19  Aligned_cols=136  Identities=18%  Similarity=0.196  Sum_probs=112.0

Q ss_pred             ccceEEEccccCChhhHHHHHhhCC-CCeEEcCCCCCcceeee----------------eccCCcccccccccCcccccC
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLP-TRRLLLPSVLSSSSTCH----------------SLLPSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p-~~~i~~~yg~te~~~~~----------------~~~~~~~~~~~~~~~~~~~~~   92 (174)
                      +++.+.++++.++....+++.+..+ ...+.+.||.||+....                .+.++....+.+.....++.+
T Consensus       486 ~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~g  565 (642)
T COG1020         486 RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLG  565 (642)
T ss_pred             cccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCC
Confidence            5899999999999999999988777 68899999999954211                111111111123345577888


Q ss_pred             CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           93 VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        93 ~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.||+++  .++.+||+++|+.|+++|..+.+|+|||++++  ||.+.++||.|+++|+.|++|.+.|||..+..+|
T Consensus       566 v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         566 VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            9999999  89999999999999999965469999999997  9999999999999999999999999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.60  E-value=7.1e-15  Score=123.40  Aligned_cols=118  Identities=14%  Similarity=0.042  Sum_probs=83.5

Q ss_pred             EEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcccccccccCcccccCCcCeEEeCcccccccCCcccc
Q 030653           34 IRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFVKLISAGYVGEQEVT  113 (174)
Q Consensus        34 i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gel~v~~v~~gY~~~~~~t  113 (174)
                      +++++.+++++..+.+++. ...++++.||+||++++........               .+... |.+.. ..++   .
T Consensus       210 ~i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~~~---------------~~~~~-p~~~~-~~~~---~  268 (386)
T TIGR02372       210 GVSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAPDD---------------PFRLL-PDLAC-FADT---L  268 (386)
T ss_pred             eEecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCCCC---------------CcccC-CCccc-cCCC---c
Confidence            3567889999999999885 3357899999999876543221100               01110 11100 0000   0


Q ss_pred             cccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEe
Q 030653          114 SATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI  173 (174)
Q Consensus       114 ~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vv  173 (174)
                      .. -....|++|||++++  +|+|+|+||+||+||++|++|+|.+||++|.+||.|.+++|+
T Consensus       269 ~~-~g~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~  329 (386)
T TIGR02372       269 SS-AGLARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVR  329 (386)
T ss_pred             cC-CCccceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEE
Confidence            00 001247899999999  999999999999999999999999999999999999999875

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.55  E-value=3e-14  Score=121.61  Aligned_cols=133  Identities=19%  Similarity=0.146  Sum_probs=101.9

Q ss_pred             ChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------------------CCcccccccccCc--ccccCC
Q 030653           42 EVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------------------PSVVSSSLLIRTL--SMWVAV   93 (174)
Q Consensus        42 ~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------------------~~~~~~~~~~~~~--~~~~~~   93 (174)
                      -++.-+.+.++|...+|.+.||+||+.......                          +.......+.+|.  .++.|+
T Consensus       368 R~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GE  447 (649)
T KOG1179|consen  368 RPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGE  447 (649)
T ss_pred             CchHHHHHHHHcCCCeEEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCC
Confidence            356668889999889999999999987321110                          1000111122333  456689


Q ss_pred             cCeEEe----Ccc---cccccCCcccccccc------cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHH
Q 030653           94 LGSKFV----KLI---SAGYVGEQEVTSATL------LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELE  158 (174)
Q Consensus        94 ~Gel~v----~~v---~~gY~~~~~~t~~~~------~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE  158 (174)
                      +|.++.    ..-   |.||.+....|+...      .+|-||.|||+-..  .|++||.+|..|.+.+.||||+..|||
T Consensus       448 pGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe  527 (649)
T KOG1179|consen  448 PGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVE  527 (649)
T ss_pred             CceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHH
Confidence            997763    333   999999777776654      24569999999999  999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEeC
Q 030653          159 HLLLSHPEMVDAAVIP  174 (174)
Q Consensus       159 ~~l~~~~~V~~~~Vvg  174 (174)
                      .+|..+..++|+.|+|
T Consensus       528 ~~l~~~~~~~dv~VYG  543 (649)
T KOG1179|consen  528 DVLSALDFLQDVNVYG  543 (649)
T ss_pred             HHHhhhccccceeEEE
Confidence            9999999999999987

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.32  E-value=1.3e-11  Score=105.37  Aligned_cols=129  Identities=8%  Similarity=-0.049  Sum_probs=89.1

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCC---------cccccccccCc-ccccCCcCeEE
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPS---------VVSSSLLIRTL-SMWVAVLGSKF   98 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~Gel~   98 (174)
                      ..++.++++|+.++....+.+.+.+ ++.+++.||+||++.+..+...         ....+++.+++ .++.|+.|||+
T Consensus       204 ~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE~~~~~~c~~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELv  282 (445)
T TIGR03335       204 SSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTEGTMCGECQAVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIV  282 (445)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhhhhheEEecCCCCccccCCceEEEEEcCCCCCCCcCCCceEEE
Confidence            4688999999999999988888877 5899999999997533222111         11122344444 35779999999


Q ss_pred             eCcccccccCCcccccccccCCCeEecCCeeee-------CCe----EEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           99 VKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-------DSF----LFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        99 v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-------dG~----l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +..+.+.-  ..+..  .+   ==|+|||++.+       .|+    +...||.||+++++|.+|+|.+||++|.+++
T Consensus       283 vT~L~~~~--~r~~~--Pl---iRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~  353 (445)
T TIGR03335       283 LTTLLKPG--ERCGS--LL---INYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRE  353 (445)
T ss_pred             EEecCCCC--ccCCc--eE---EEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccC
Confidence            75543210  00000  00   12899999885       221    4456999999999999999999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.30  E-value=4.2e-12  Score=105.81  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=47.1

Q ss_pred             CCCeEecCCeeee---CCeEEEEeccCCeEEECc---EEeChHHHHHHHhcCCCcceEEEeC
Q 030653          119 PDGWMRTGDLCYE---DSFLFIVDGLKDLVKYKG---CQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       119 ~~g~~~TGD~g~~---dG~l~~~GR~~d~i~~~G---~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      .+|||+|||+|++   ||+|+|.||.+     +|   ++|+|. ||++|.+||+|.+|+|+|
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvg  262 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIAL  262 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEE
Confidence            5799999999995   99999999998     88   899999 999999999999999986

>PTZ00297 pantothenate kinase; Provisional

Probab=99.08  E-value=3e-10  Score=108.09  Aligned_cols=125  Identities=14%  Similarity=0.015  Sum_probs=82.8

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcccccccccCcccccC---------CcCeEEeC
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVA---------VLGSKFVK  100 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~Gel~v~  100 (174)
                      .++.+++|+.   ++.+.....  ....++..|+.||..++.... .......+..+.++...         ..|||++ 
T Consensus       758 rlr~~isGga---~~~l~~~l~--~~i~i~~g~glTE~~~~~~~~-~~~~~G~PlpgvEvKI~~~~E~~~~~~~GEIlv-  830 (1452)
T PTZ00297        758 CVEKIVLCVS---EESTSFSLL--EHISVCYVPCLREVFFLPSEG-VFCVDGTPAPSLQVDLEPFDEPSDGAGIGQLVL-  830 (1452)
T ss_pred             CeEEEEECCC---ccccChHHh--CCceEEEecceEEeeeecCCC-CcccCCeecCceEEEEcccccccCCCCCCeEEE-
Confidence            4677777752   111111111  135677788888865442211 11010112222222221         2499876 


Q ss_pred             cccccccCCcccccccccCCCeEecCCeeeeCCeEEEEeccCCeEEE-CcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653          101 LISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFIVDGLKDLVKY-KGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       101 ~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~dG~l~~~GR~~d~i~~-~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                          +|+++|++|++.+  ++|+.       ||+|.|+||++|+||. +|++|+|+.||+++..+|.|.+++|+|
T Consensus       831 ----r~~kdpe~T~e~~--~gW~~-------dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~G  892 (1452)
T PTZ00297        831 ----AKKGEPRRTLPIA--AQWKR-------DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYA  892 (1452)
T ss_pred             ----EECCChHHHHHhh--CcCcc-------CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEe
Confidence                4679999998743  56641       8999999999999999 999999999999999999999999997

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.02  E-value=3e-09  Score=89.92  Aligned_cols=128  Identities=14%  Similarity=0.048  Sum_probs=95.2

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee--eccCCc---------cccccc-ccCcccccCCcCe
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH--SLLPSV---------VSSSLL-IRTLSMWVAVLGS   96 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~--~~~~~~---------~~~~~~-~~~~~~~~~~~Ge   96 (174)
                      ..++.+++|+++.++++.+.+.+.| ++..++.||+||...++  .+....         ....++ ..+..++.+..||
T Consensus       210 ~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~~g~g~~eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~Ge  288 (438)
T COG1541         210 LSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEGFGPGAGECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGE  288 (438)
T ss_pred             cceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccccCCcccccccccCCCcchhhceeeeecCCcCccCCCCCeeE
Confidence            4578889999999999999999998 57889999999985442  222221         122233 2344667788899


Q ss_pred             EEeCcccccccCCcccccccccCCCeEecCCeeee-C-----Ce-----EEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           97 KFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-D-----SF-----LFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        97 l~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-d-----G~-----l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      |++..+.+...           +-==|+|||+..+ +     |+     -.+.||.||++++.|.+|+|..||++|.+.+
T Consensus       289 lV~T~L~~~~~-----------PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~  357 (438)
T COG1541         289 LVITTLTKEGM-----------PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIP  357 (438)
T ss_pred             EEEEeccccCc-----------ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhccc
Confidence            98755442111           1113899999999 3     32     5689999999999999999999999999999


Q ss_pred             Ccc
Q 030653          166 EMV  168 (174)
Q Consensus       166 ~V~  168 (174)
                      .+.
T Consensus       358 ~~~  360 (438)
T COG1541         358 EVT  360 (438)
T ss_pred             CCC
Confidence            987

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.44  E-value=6.5e-07  Score=82.65  Aligned_cols=54  Identities=24%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEe
Q 030653          120 DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI  173 (174)
Q Consensus       120 ~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vv  173 (174)
                      +..|+|||.|+.  +|.+.+.||.|++||.+|.|+.+.||+.++..||.|.++.+.
T Consensus       453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl  508 (1032)
T KOG1178|consen  453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITL  508 (1032)
T ss_pred             hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhhee
Confidence            468999999987  999999999999999999999999999999999999987654

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=97.98  E-value=9.7e-05  Score=63.17  Aligned_cols=131  Identities=11%  Similarity=0.066  Sum_probs=76.4

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcc---cccccccCcccccCCcCeEEeCccccc
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVV---SSSLLIRTLSMWVAVLGSKFVKLISAG  105 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Gel~v~~v~~g  105 (174)
                      ..++.|+++++.+++...+.+.+.|. +++++.||+||+.-...+..+.+   .+....+..-+.....+.+++.++   
T Consensus       212 ~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tEg~la~eC~~g~lHl~ed~~~vE~~ivD~~~~~~~ViT~L---  287 (430)
T TIGR02304       212 IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATEGFLASTCRCGTLHLNEDLVHIEKQYLDEHKRFVPIITDF---  287 (430)
T ss_pred             CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCchhheEEecCCCCEEEccccEEEEeeEECCCCceEEEEecC---
Confidence            35788999999999998899999995 78999999999422222221111   000111100000000111121111   


Q ss_pred             ccCCcccccccccCCCeEecCCeeee------CCe----E-EEEeccCCeEEE---Cc--EEeChHHHHHHHh-cCCCcc
Q 030653          106 YVGEQEVTSATLLPDGWMRTGDLCYE------DSF----L-FIVDGLKDLVKY---KG--CQVAPAELEHLLL-SHPEMV  168 (174)
Q Consensus       106 Y~~~~~~t~~~~~~~g~~~TGD~g~~------dG~----l-~~~GR~~d~i~~---~G--~~v~p~eVE~~l~-~~~~V~  168 (174)
                       .+...   . +   ==|+|||++..      .|.    + .|.||.+|++++   +|  .+|+|..+++++. ..+.|.
T Consensus       288 -~n~~~---P-l---IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~  359 (430)
T TIGR02304       288 -TRTTQ---P-I---VRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIV  359 (430)
T ss_pred             -CCccc---e-E---EeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCc
Confidence             11000   0 0   02899999887      243    3 378999999986   44  4559999998744 567876


Q ss_pred             eEE
Q 030653          169 DAA  171 (174)
Q Consensus       169 ~~~  171 (174)
                      +.-
T Consensus       360 ~yQ  362 (430)
T TIGR02304       360 EYR  362 (430)
T ss_pred             eEE
Confidence            653

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=97.70  E-value=0.0001  Score=68.05  Aligned_cols=91  Identities=21%  Similarity=0.333  Sum_probs=67.3

Q ss_pred             cccCcccccCCcCeEEe--CcccccccCCccc-ccccc---------cCCCeEecCCeeee------CC------eEEEE
Q 030653           83 LIRTLSMWVAVLGSKFV--KLISAGYVGEQEV-TSATL---------LPDGWMRTGDLCYE------DS------FLFIV  138 (174)
Q Consensus        83 ~~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~-t~~~~---------~~~g~~~TGD~g~~------dG------~l~~~  138 (174)
                      +..-..+..++.||+|+  +.-+.+|+.-.+. ....|         ...+|-||||+|++      |+      -||++
T Consensus      1169 PEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVl 1248 (1363)
T KOG3628|consen 1169 PETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVL 1248 (1363)
T ss_pred             CccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEe
Confidence            33445777899999999  4444445543211 11111         13469999999998      32      49999


Q ss_pred             eccCCeEEECcEEeChHHHHHHHhc-CCCcceEEEe
Q 030653          139 DGLKDLVKYKGCQVAPAELEHLLLS-HPEMVDAAVI  173 (174)
Q Consensus       139 GR~~d~i~~~G~~v~p~eVE~~l~~-~~~V~~~~Vv  173 (174)
                      |-.++.+.++|.+.+|.+||+.+.. ||.|..|+|+
T Consensus      1249 G~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF 1284 (1363)
T KOG3628|consen 1249 GAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVF 1284 (1363)
T ss_pred             ecccceeeecCcccCcchHHHHHHHhcccccceeeE
Confidence            9999999999999999999996665 9999999986

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.03  E-value=0.0031  Score=55.37  Aligned_cols=42  Identities=12%  Similarity=0.195  Sum_probs=36.1

Q ss_pred             EecCCeeee----CC--eEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653          123 MRTGDLCYE----DS--FLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus       123 ~~TGD~g~~----dG--~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      |+.||++++    ++  .+.|+||.+.++++.|++++-.+|++++.+.
T Consensus       371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~  418 (528)
T PF03321_consen  371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARA  418 (528)
T ss_dssp             EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHH
T ss_pred             eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHH
Confidence            889999998    66  7999999999999999999999999998875

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=96.25  E-value=0.033  Score=49.73  Aligned_cols=41  Identities=17%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             EecCCeeee----CC--eEEEEeccCCeEEECcEEeChHHHHHHHhc
Q 030653          123 MRTGDLCYE----DS--FLFIVDGLKDLVKYKGCQVAPAELEHLLLS  163 (174)
Q Consensus       123 ~~TGD~g~~----dG--~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~  163 (174)
                      |+.||+.++    ++  .|.|+||.+.++++-|+++.-.+++.++..
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            789999999    22  599999999999999999999999998877

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=95.18  E-value=0.03  Score=52.53  Aligned_cols=91  Identities=13%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             cccCcccccCCcCeEEe--CcccccccCCccccccccc------------CCCeEecCCeeee-CCeEEEEeccCCeEEE
Q 030653           83 LIRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL------------PDGWMRTGDLCYE-DSFLFIVDGLKDLVKY  147 (174)
Q Consensus        83 ~~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~------------~~g~~~TGD~g~~-dG~l~~~GR~~d~i~~  147 (174)
                      +....-|..+++|||||  +.....||.-+..|...|.            ...|.|||=+|++ .|.+||+|-++|++-.
T Consensus       519 ~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq  598 (1363)
T KOG3628|consen  519 PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQ  598 (1363)
T ss_pred             CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEechhhhhh
Confidence            33445677789999999  8999999988877777662            1238999999999 9999999976666554


Q ss_pred             -CcEEeChHHH----------HHHHhcCCCcceEEEe
Q 030653          148 -KGCQVAPAEL----------EHLLLSHPEMVDAAVI  173 (174)
Q Consensus       148 -~G~~v~p~eV----------E~~l~~~~~V~~~~Vv  173 (174)
                       .|.+.+..+|          +.+.+..+.|.+++++
T Consensus       599 ~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf  635 (1363)
T KOG3628|consen  599 VSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAF  635 (1363)
T ss_pred             hhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeee
Confidence             6666654443          4445556677777654

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=91.89  E-value=0.65  Score=39.04  Aligned_cols=99  Identities=12%  Similarity=0.121  Sum_probs=56.4

Q ss_pred             ccCCh-hhHHHHHhhCC---CCeEEcCCCCCcceeeeec-------cCCcccccccccC-cccccCCcCeEEe-Cccccc
Q 030653           39 QMAEV-RHHRPIPHTLP---TRRLLLPSVLSSSSTCHSL-------LPSVVSSSLLIRT-LSMWVAVLGSKFV-KLISAG  105 (174)
Q Consensus        39 ~~~~~-~~~~~l~~~~p---~~~i~~~yg~te~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~Gel~v-~~v~~g  105 (174)
                      +..++ +..+.+.+.|.   ..+++.+||+||..+...-       .|.. ....+..+ ..++.|+.|-|.+ .-....
T Consensus       237 e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~s  315 (365)
T PF04443_consen  237 EAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANTS  315 (365)
T ss_pred             CccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCcccCCCe-EEEECCCCCcCCCCCCeeEEEEEcccccC
Confidence            34444 55566667673   3689999999996642211       1211 11113222 3556677887765 222222


Q ss_pred             ccCCcccccccccCCCeEecCCeeee-CC---------eEEEEeccCCeEEECcEEe
Q 030653          106 YVGEQEVTSATLLPDGWMRTGDLCYE-DS---------FLFIVDGLKDLVKYKGCQV  152 (174)
Q Consensus       106 Y~~~~~~t~~~~~~~g~~~TGD~g~~-dG---------~l~~~GR~~d~i~~~G~~v  152 (174)
                      |             .+..-|.|+|.+ ++         ++.++||.+.. .++|...
T Consensus       316 ~-------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~a-e~RGCs~  358 (365)
T PF04443_consen  316 Y-------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADGA-EIRGCSL  358 (365)
T ss_pred             C-------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCCC-ccCCcHH
Confidence            2             344669999977 32         79999998743 2345443

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=81.62  E-value=2.6  Score=37.86  Aligned_cols=42  Identities=12%  Similarity=0.140  Sum_probs=36.7

Q ss_pred             EecCCeeee----CC--eEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653          123 MRTGDLCYE----DS--FLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus       123 ~~TGD~g~~----dG--~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      |+.||+.++    ++  .|.|++|.+.+..+.|+|+.-.++-.++...
T Consensus       417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence            779999998    33  5999999999999999999999988877663

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=80.36  E-value=3.2  Score=37.30  Aligned_cols=42  Identities=12%  Similarity=0.142  Sum_probs=36.2

Q ss_pred             EecCCeeee----CC--eEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653          123 MRTGDLCYE----DS--FLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus       123 ~~TGD~g~~----dG--~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      |+.||+.++    ++  .|.|++|.+.+.++.|+|+.-.++-.++...
T Consensus       423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA  470 (612)
T ss_pred             EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence            779999998    33  5999999999999999999999987776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-19
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		7e-18
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		7e-18
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		7e-18
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		8e-17
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		8e-15
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		8e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		8e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-14
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		7e-13
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-11
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		6e-07
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		7e-07
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-06
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		5e-06
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		5e-06
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		7e-06
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-05
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-05
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-04
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-04
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		6e-04

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           +I +GYV   E T+A +  DGW+ +GD+ Y  ED   FIVD LK L+KYKGCQVAPAELE
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELE 460
Query: 159 HLLLSHPEMVDAAV 172
            +LL HP + DA V
Sbjct: 461 SILLQHPNIFDAGV 474

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           +I +GYV   E T+A +  DGW+ +GD+ Y  ED   FIVD LK L+KYKG QVAPAELE
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 455
Query: 159 HLLLSHPEMVDAAV 172
            +LL HP + DA V
Sbjct: 456 SILLQHPNIFDAGV 469

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           +I +GYV   E T+A +  DGW+ +GD+ Y  ED   FIVD LK L+KYKG QVAPAELE
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 455
Query: 159 HLLLSHPEMVDAAV 172
            +LL HP + DA V
Sbjct: 456 SILLQHPNIFDAGV 469

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           +I +GYV   E T+A +  DGW+ +GD+ Y  ED   FIVD LK L+KYKG QVAPAELE
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 460
Query: 159 HLLLSHPEMVDAAV 172
            +LL HP + DA V
Sbjct: 461 SILLQHPNIFDAGV 474

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           +I  GYV   E TSA +  DGW+ +GD+ Y  +D + FIVD LK L+KYKG QV PAELE
Sbjct: 431 MIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELE 490
Query: 159 HLLLSHPEMVDAAV 172
            +LL HP + DA V
Sbjct: 491 SILLQHPFIFDAGV 504

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           ++  GYV   E T   +  +GW+ TGD+ Y  E+   FIVD LK L+KYKG QV PAELE
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELE 457
Query: 159 HLLLSHPEMVDAAV 172
            +LL HP + DA V
Sbjct: 458 SVLLQHPSIFDAGV 471

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           ++  GYV   E T   +  +GW+ TGD+ Y  E+   FIVD LK L+KYKG QV PAELE
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELE 457
Query: 159 HLLLSHPEMVDAAV 172
            +LL HP + DA V
Sbjct: 458 SVLLQHPSIFDAGV 471

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
           ++  GYV   E T   +  +GW+ TGD+ Y  E+   FIVD LK L+KYKG QV PAELE
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELE 457
Query: 159 HLLLSHPEMVDAAV 172
            +LL HP + DA V
Sbjct: 458 SVLLQHPSIFDAGV 471

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 6/91 (6%)
Query: 85  RTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSF--LFIVDGLK 142
           R     + + G + +K    GY+ + E TS T+  +GW+ TGD+ Y D    LFIVD LK
Sbjct: 379 RNQPGEICIRGDQIMK----GYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLK 434
Query: 143 DLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           +L+KYKG QVAPAELE LL++HPE+ DAAV+
Sbjct: 435 ELIKYKGFQVAPAELEALLIAHPEISDAAVV 465

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSF--LFIVDGLKDLVKYKGCQVAPAELEH 159
           I  GY+     T+ T+  DGW+ TGD+   D    LFIVD LK+L+KYKG QVAPAELE 
Sbjct: 439 IMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEA 498
Query: 160 LLLSHPEMVDAAVI 173
           LL+ HP++ D AV+
Sbjct: 499 LLIGHPDITDVAVV 512

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I+ GY G +E T + L PDG+ RTGD+    E+ ++ I D LKDL+K  G  ++  +LE+
Sbjct: 393 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 452
Query: 160 LLLSHPEMVDAAVI 173
            L+ HP++ +AAV+
Sbjct: 453 ALMGHPKVKEAAVV 466

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 106 YVGEQEVTSATLLPDGWMRTGDLCYEDSFLFI-VDGLK--DLVKYKGCQVAPAELEHLLL 162
           Y+   + T+A    DG+ RTGD+   D   ++ + G K  DL+K  G ++   E+E+ LL
Sbjct: 367 YLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL 426
Query: 163 SHPEMVDAAV 172
            HPE+ +AAV
Sbjct: 427 EHPEVREAAV 436

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 122 WMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           + RTGD+ +  E+ FL   D +K+++KYKG  +AP ELE LL  H  + D AVI
Sbjct: 417 FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVI 470

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY   +E  +A+   DG+ RTGD+     D ++ +    KD +   G +VA  E+E+ LL
Sbjct: 391 GYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL 450
Query: 163 SHPEMVDAAVI 173
           +HP + DAA++
Sbjct: 451 AHPAVHDAAMV 461

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           +GW RTGD+    ++ +L+I D LKD++   G  V PAE+E +++  P + + AVI
Sbjct: 389 NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 444

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEHL 160
           + +GY G+Q V+   +   GW+ TGDL Y  D +L++   +KDL+  +G  + P ++E++
Sbjct: 420 LXSGYFGDQ-VSQDEIAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYI 478
Query: 161 LLSHPEM 167
               PE+
Sbjct: 479 AEQEPEI 485

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLC--YEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY   +E  +A+   DG+ RTGD+     D ++ +    KD +   G +VA  E+E+ LL
Sbjct: 391 GYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL 450
Query: 163 SHPEMVDAAVI 173
           +HP + DAA +
Sbjct: 451 AHPAVHDAAXV 461

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAV 172
           DG+  TGD+ +  ED +L+ V    D++K  G +V P E+E  L+ HP +++ A+
Sbjct: 451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAI 505

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I +GYV   + T+A +  D W+  GD  +  ED +   +    D++   G ++ P+E+E+
Sbjct: 415 IFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVEN 473
Query: 160 LLLSHPEMVDAAVI 173
            L+ HP +V+ AVI
Sbjct: 474 ALMEHPAVVETAVI 487

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I +GYV   + T+A +  D W+  GD  +  ED +   +    D++   G ++ P+E+E+
Sbjct: 415 IFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVEN 473
Query: 160 LLLSHPEMVDAAVI 173
            L+ HP +V+ AVI
Sbjct: 474 ALMEHPAVVETAVI 487

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    E  S     D +  +GDL     D  L +V  +KD +   G ++A  E+E L+L
Sbjct: 400 GYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL 459
Query: 163 SHPEMVDAAVI 173
            HPE++ AA++
Sbjct: 460 LHPEVMHAALV 470

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 120 DGWMRTGDLCY--EDSFLFIVDGL--KDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
           +GW  TGD+     D +LF       K+L+K  G  V PAE+E  L  HP + DA VI
Sbjct: 374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVI 431

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 94  LGSKFVKLISAG--YVGEQEVTSATLLPDGWMRTGD-LCYEDSFLFIVDGLKD-LVKYKG 149
           +G  ++K  SA   Y   +E + AT L + W+R+GD  C   +  ++  G  D ++K  G
Sbjct: 378 VGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSG 436
Query: 150 CQVAPAELEHLLLSHPEMVDAAVI 173
             V+P E+E +L+ H  +++AAV+
Sbjct: 437 QYVSPVEVEMVLVQHDAVLEAAVV 460

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	3e-33
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	6e-33
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-32
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	3e-32
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-25
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-19
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	6e-19
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	8e-18
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-17
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-17
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-17
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	5e-17
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-16
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	3e-16
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-14
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	3e-12
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-09
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-08
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-07
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-06

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  123 bits (311), Expect = 3e-33
 Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+     T+ T+  DGW+ TGD+    +D  LFIVD LK+L+KYKG QVAPAELE LL+
Sbjct: 442 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 501

Query: 163 SHPEMVDAAVIP 174
            HP++ D AV+ 
Sbjct: 502 GHPDITDVAVVA 513

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  121 bits (306), Expect = 6e-33
 Identities = 42/72 (58%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+ + E TS T+  +GW+ TGD+ Y  +D  LFIVD LK+L+KYKG QVAPAELE LL+
Sbjct: 395 GYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 454

Query: 163 SHPEMVDAAVIP 174
           +HPE+ DAAV+ 
Sbjct: 455 AHPEISDAAVVG 466

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  120 bits (303), Expect = 2e-32
 Identities = 40/72 (55%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GYV   E T+A +  DGW+ +GD+ Y  ED   FIVD LK L+KYKG QVAPAELE +LL
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL 459

Query: 163 SHPEMVDAAVIP 174
            HP + DA V  
Sbjct: 460 QHPNIFDAGVAG 471

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  119 bits (301), Expect = 3e-32
 Identities = 37/72 (51%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GYV   E T   +  +GW+ TGD+ Y  E+   FIVD LK L+KYKG QV PAELE +LL
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461

Query: 163 SHPEMVDAAVIP 174
            HP + DA V  
Sbjct: 462 QHPSIFDAGVAG 473

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  100 bits (252), Expect = 1e-25
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 104 AGYVGEQEVTSATLLP----DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAEL 157
            GY   ++              + RTGD+ +  E+ FL   D +K+++KYKG  +AP EL
Sbjct: 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFEL 454

Query: 158 EHLLLSHPEMVDAAVIP 174
           E LL+ H  ++D AVI 
Sbjct: 455 EALLMKHEAVMDVAVIG 471

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY    E T +    DG+  TGDL    E  ++ I+   KDLV   G  V P E+E  +
Sbjct: 359 KGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEI 418

Query: 162 LSHPEMVDAAVI 173
            + P +V++AVI
Sbjct: 419 DAMPGVVESAVI 430

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 81.9 bits (203), Expect = 6e-19
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVD-GLKDLVKYKGCQVAPAELEHL 160
             Y+   + T+A    DG+ RTGD+     D ++ IV     DL+K  G ++   E+E+ 
Sbjct: 365 TEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENA 424

Query: 161 LLSHPEMVDAAVI 173
           LL HPE+ +AAV 
Sbjct: 425 LLEHPEVREAAVT 437

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 78.8 bits (195), Expect = 8e-18
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    +  ++    +G+  +GDL     + ++ +    KD +   G ++A  E+E+LLL
Sbjct: 395 GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL 454

Query: 163 SHPEMVDAAVI 173
            HP ++ AA++
Sbjct: 455 RHPAVIYAALV 465

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY   +E  +A+   DG+ RTGD+     D ++ +    KD +   G +VA  E+E+ LL
Sbjct: 391 GYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL 450

Query: 163 SHPEMVDAAVI 173
           +HP + DAA++
Sbjct: 451 AHPAVHDAAMV 461

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY    E  S     D +  +GDL     D  L +V  +KD +   G ++A  E+E L+L
Sbjct: 400 GYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL 459

Query: 163 SHPEMVDAAVI 173
            HPE++ AA++
Sbjct: 460 LHPEVMHAALV 470

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY+ + + T+  L  DGW RT D+     +  + I+  + D++   G  + P+E+E +L
Sbjct: 363 VGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421

Query: 162 LSHPEMVDAAVI 173
            + P + +  VI
Sbjct: 422 GTAPGVTEVVVI 433

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 76.4 bits (189), Expect = 5e-17
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
             Y    E T      +GW RTGD+    ++ +L+I D LKD++   G  V PAE+E ++
Sbjct: 374 KEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVI 432

Query: 162 LSHPEMVDAAVI 173
           +  P + + AVI
Sbjct: 433 IGVPGVSEVAVI 444

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 74.9 bits (185), Expect = 2e-16
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
            GY+   ++T      +G+  TGD+     + ++ I D  KDL+   G  + P ++E + 
Sbjct: 360 NGYLYPTDLTGT--FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVA 417

Query: 162 LSHPEMVDAAVI 173
              P + DA  +
Sbjct: 418 KQFPGISDAVCV 429

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 74.1 bits (183), Expect = 3e-16
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVD--GLKDLVKYKGCQVAPAELEH 159
            GY      T      +GW  TGD+     D +LF       K+L+K  G  V PAE+E 
Sbjct: 359 KGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEG 417

Query: 160 LLLSHPEMVDAAVI 173
            L  HP + DA VI
Sbjct: 418 ALKQHPAIADAVVI 431

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 67.6 bits (166), Expect = 5e-14
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 104 AGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLL 161
             Y   +E + AT     W+R+GD      +          D++K  G  V+P E+E +L
Sbjct: 390 VMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVL 448

Query: 162 LSHPEMVDAAVI 173
           + H  +++AAV+
Sbjct: 449 VQHDAVLEAAVV 460

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 62.9 bits (154), Expect = 3e-12
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I+ GY G +E T + L PDG+ RTGD+    E+ ++ I D LKDL+K  G  ++  +LE+
Sbjct: 393 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 452

Query: 160 LLLSHPEMVDAAVI 173
            L+ HP++ +AAV+
Sbjct: 453 ALMGHPKVKEAAVV 466

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIV---DGLKDLVKYKGCQVAPAELEH 159
           GYV   + T+A +    +   GD     ED +   +   D   D++   G ++ P+E+E+
Sbjct: 418 GYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRAD---DIINSSGYRIGPSEVEN 473

Query: 160 LLLSHPEMVDAAVIP 174
            L+ HP +V+ AVI 
Sbjct: 474 ALMEHPAVVETAVIS 488

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIV---DGLKDLVKYKGCQVAPAELEH 159
            Y  + E T  T   DG+  TGD+ +  ED +L+ V   D   D++K  G +V P E+E 
Sbjct: 437 HYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRAD---DIIKTSGYKVGPFEVES 492

Query: 160 LLLSHPEMVDAAVIP 174
            L+ HP +++ A+  
Sbjct: 493 ALIQHPAVLECAITG 507

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 102 ISAGYVGEQEVTSATL--------LPDGWMRTGDLCY-EDSFLFIVDGLKDLVKYKGCQV 152
           ++ GY  + E T                ++RTGDL +  ++ L++   +KDL+   G   
Sbjct: 409 VAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNH 468

Query: 153 APAELEHLLLSHPEMV 168
            P ++E  L+  P   
Sbjct: 469 YPQDIEFSLMHSPLHH 484

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.97
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.97
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.96
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.96
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.96
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.96
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.96
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.96
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.96
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.96
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.96
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.96
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.95
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.95
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.95
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.95
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.95
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.95
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.95
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.95
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.95
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.95
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.94
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.94
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.94
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.93
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.93
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.87
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.86
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.84
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.83
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.79
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	98.73
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.31
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.26
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.12

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.97  E-value=1.7e-31  Score=229.40  Aligned_cols=151  Identities=33%  Similarity=0.468  Sum_probs=131.0

Q ss_pred             ccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-------------------cCCccccccc-
Q 030653           24 LSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-------------------LPSVVSSSLL-   83 (174)
Q Consensus        24 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-------------------~~~~~~~~~~-   83 (174)
                      ....+..++.+.+||+.+++++.+.+++.+|++++++.||+||++.+...                   .+.......+ 
T Consensus       292 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~  371 (536)
T 3ni2_A          292 DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDP  371 (536)
T ss_dssp             GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECT
T ss_pred             ccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeC
Confidence            34456779999999999999999999999999999999999998743221                   1222222233 


Q ss_pred             ccCcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           84 IRTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        84 ~~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      ..+..++.++.|||++  |++++|||++|+.|++.|+.+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||+
T Consensus       372 ~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~  451 (536)
T 3ni2_A          372 ETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEA  451 (536)
T ss_dssp             TTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHH
T ss_pred             CCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHH
Confidence            3356778899999999  99999999999999999988999999999999  9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      +|.+||+|.+|+|+|
T Consensus       452 ~l~~~p~V~~a~Vv~  466 (536)
T 3ni2_A          452 LLIAHPEISDAAVVG  466 (536)
T ss_dssp             HHHTSTTEEEEEEEE
T ss_pred             HHHhCCCcceEEEEe
Confidence            999999999999985

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.97  E-value=9.8e-31  Score=223.31  Aligned_cols=150  Identities=17%  Similarity=0.187  Sum_probs=129.7

Q ss_pred             cCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-------------------ccCCccccccccc
Q 030653           25 SNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-------------------LLPSVVSSSLLIR   85 (174)
Q Consensus        25 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-------------------~~~~~~~~~~~~~   85 (174)
                      ...+..++.+.++|+.++++..+++.+.+|++++++.||+||++.+..                   +.+.......+..
T Consensus       257 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  336 (512)
T 3fce_A          257 ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKED  336 (512)
T ss_dssp             TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSS
T ss_pred             chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCC
Confidence            344667899999999999999999999999999999999999864322                   2222223333556


Q ss_pred             CcccccCCcCeEEe--CcccccccCCcccccccc---cCCCeEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           86 TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATL---LPDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        86 ~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~---~~~g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      +..++.++.|||++  |+++.|||++|+.|++.|   +.++||+|||+|++ ||+|+|+||+||+||++|++|+|.|||+
T Consensus       337 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE~  416 (512)
T 3fce_A          337 GTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEH  416 (512)
T ss_dssp             SCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHHHHH
T ss_pred             CCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHHHHH
Confidence            67788899999999  999999999999999887   34679999999999 9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      +|.+||+|.+|+|+|
T Consensus       417 ~l~~~p~V~~a~vv~  431 (512)
T 3fce_A          417 HLRACSYVEGAVIVP  431 (512)
T ss_dssp             HHHHSTTEEEEEEEE
T ss_pred             HHHhCCCcceEEEEE
Confidence            999999999999974

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.97  E-value=1.8e-30  Score=221.86  Aligned_cols=150  Identities=19%  Similarity=0.244  Sum_probs=129.5

Q ss_pred             cCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee-------------------eccCCccccccccc
Q 030653           25 SNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH-------------------SLLPSVVSSSLLIR   85 (174)
Q Consensus        25 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~-------------------~~~~~~~~~~~~~~   85 (174)
                      ...+..++.+.++|+.++++..+.+.+.+|++++++.||+||++.+.                   .+.+.......+.+
T Consensus       256 ~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  335 (511)
T 3e7w_A          256 QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEE  335 (511)
T ss_dssp             TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTT
T ss_pred             cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCC
Confidence            34566789999999999999999999999999999999999986422                   22233333444556


Q ss_pred             CcccccCCcCeEEe--CcccccccCCccccccccc-CCC--eEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           86 TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL-PDG--WMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        86 ~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~-~~g--~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      +..++.++.|||++  |+++.|||++|+.|++.|. .+|  ||+|||+|++ ||+|+|+||+||+||++|++|+|.|||+
T Consensus       336 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~  415 (511)
T 3e7w_A          336 GQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEF  415 (511)
T ss_dssp             SCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHHHHH
T ss_pred             CCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHHHHH
Confidence            77888899999999  9999999999999999883 233  8999999999 9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      +|.+||.|.+|+|+|
T Consensus       416 ~l~~~p~V~~a~vv~  430 (511)
T 3e7w_A          416 HVRQSQYVRSAVVIP  430 (511)
T ss_dssp             HHHHSTTEEEEEEEE
T ss_pred             HHHhCCCcceEEEEE
Confidence            999999999999984

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.97  E-value=1.4e-30  Score=222.45  Aligned_cols=148  Identities=23%  Similarity=0.220  Sum_probs=128.6

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee--------------eccCCccccccc-ccCcccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH--------------SLLPSVVSSSLL-IRTLSMW   90 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~--------------~~~~~~~~~~~~-~~~~~~~   90 (174)
                      ..+..++.+.+|++.++++..+.+.+.+ +.++++.||+||++.+.              .+.+.......+ ..+..++
T Consensus       265 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~  343 (503)
T 4fuq_A          265 ETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELP  343 (503)
T ss_dssp             TTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCC
T ss_pred             cchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCc
Confidence            3456789999999999999999999887 47899999999987432              222333333334 4566788


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  |++++|||++|+.|++.|..+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+||+
T Consensus       344 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~  423 (503)
T 4fuq_A          344 RGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPG  423 (503)
T ss_dssp             TTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTT
T ss_pred             CCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCC
Confidence            899999999  99999999999999999988999999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|+|
T Consensus       424 V~~a~vv~  431 (503)
T 4fuq_A          424 VVESAVIG  431 (503)
T ss_dssp             EEEEEEEE
T ss_pred             eeEEEEEE
Confidence            99999975

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.97  E-value=8.4e-31  Score=223.99  Aligned_cols=150  Identities=16%  Similarity=0.209  Sum_probs=127.3

Q ss_pred             cCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCccee-------------------eeeccCCccccccccc
Q 030653           25 SNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSST-------------------CHSLLPSVVSSSLLIR   85 (174)
Q Consensus        25 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~-------------------~~~~~~~~~~~~~~~~   85 (174)
                      ...+..++.+.++|+.++++..+++.+.+|++++++.||+||++.                   ++.+.+.......+.+
T Consensus       260 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~  339 (521)
T 3l8c_A          260 QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDED  339 (521)
T ss_dssp             TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTT
T ss_pred             cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCC
Confidence            345677899999999999999999999999999999999999863                   2333344444445666


Q ss_pred             CcccccCCcCeEEe--CcccccccCCcccccccc---cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHH
Q 030653           86 TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATL---LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELE  158 (174)
Q Consensus        86 ~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~---~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE  158 (174)
                      +.+++.++.|||++  |+++.|||++|+.|++.|   +.++||+|||+|++  ||+++|+||+||+||++|++|+|.|||
T Consensus       340 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE  419 (521)
T 3l8c_A          340 GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVS  419 (521)
T ss_dssp             SCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHH
T ss_pred             cCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHH
Confidence            77888899999999  999999999999999987   45689999999999  999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEeC
Q 030653          159 HLLLSHPEMVDAAVIP  174 (174)
Q Consensus       159 ~~l~~~~~V~~~~Vvg  174 (174)
                      ++|.+||+|.+|+|++
T Consensus       420 ~~l~~~p~V~~a~vv~  435 (521)
T 3l8c_A          420 QQLNQSPMVASAVAVP  435 (521)
T ss_dssp             HHHHTSTTEEEEEEEC
T ss_pred             HHHHcCCCcceEEEEE
Confidence            9999999999999885

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.96  E-value=5.9e-30  Score=224.06  Aligned_cols=149  Identities=19%  Similarity=0.154  Sum_probs=126.6

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee------------------ccCCcccccccccCc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS------------------LLPSVVSSSLLIRTL   87 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~------------------~~~~~~~~~~~~~~~   87 (174)
                      ..+..++.+.+||+.++++.++++.+.+|++++++.||.||++.+..                  +.++......+.++.
T Consensus       273 ~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~  352 (620)
T 4dg8_A          273 DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQ  352 (620)
T ss_dssp             GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSC
T ss_pred             hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCC
Confidence            34567899999999999999999999999999999999999874322                  112222222344444


Q ss_pred             c-cccCCcCeEEe--CcccccccCCcccccccccCC-------CeEecCCeeee--CCeEEEEeccCCeEEECcEEeChH
Q 030653           88 S-MWVAVLGSKFV--KLISAGYVGEQEVTSATLLPD-------GWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPA  155 (174)
Q Consensus        88 ~-~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~-------g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~  155 (174)
                      . ++.++.|||++  |++++|||++|+.|+++|..+       +||+|||+|++  ||+|+|+||+||+||++|+||+|.
T Consensus       353 ~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~  432 (620)
T 4dg8_A          353 EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLP  432 (620)
T ss_dssp             BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHH
T ss_pred             CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHH
Confidence            4 56789999999  999999999999999998542       79999999999  999999999999999999999999


Q ss_pred             HHHHHHhcCCCcceEEEeC
Q 030653          156 ELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       156 eVE~~l~~~~~V~~~~Vvg  174 (174)
                      |||++|.+||+|.+|+|++
T Consensus       433 eIE~~l~~~p~V~~a~Vv~  451 (620)
T 4dg8_A          433 ALEQRFRRQPGILDCALLV  451 (620)
T ss_dssp             HHHHHHHTSTTEEEEEEEE
T ss_pred             HHHHHHHhCCCccEEEEEE
Confidence            9999999999999999974

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.96  E-value=1.3e-30  Score=224.68  Aligned_cols=148  Identities=29%  Similarity=0.430  Sum_probs=129.1

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------CCccccccc-ccCccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------PSVVSSSLL-IRTLSMWV   91 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------~~~~~~~~~-~~~~~~~~   91 (174)
                      .+..++.+.++|+.++++..+++++.+|+.++++.||+||++.+....              +.......+ ..+..++.
T Consensus       307 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~  386 (548)
T 2d1s_A          307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGP  386 (548)
T ss_dssp             CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCT
T ss_pred             cccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCC
Confidence            456789999999999999999999999999999999999987543322              121222223 34567778


Q ss_pred             CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           92 AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        92 ~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      ++.|||++  |++++|||++|+.|++.|+.+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+||+|
T Consensus       387 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V  466 (548)
T 2d1s_A          387 NRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSI  466 (548)
T ss_dssp             TCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTE
T ss_pred             CCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCc
Confidence            89999999  99999999999999999978999999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+|+|+|
T Consensus       467 ~~a~V~~  473 (548)
T 2d1s_A          467 FDAGVAG  473 (548)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            9999985

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.96  E-value=1.8e-30  Score=224.72  Aligned_cols=149  Identities=26%  Similarity=0.264  Sum_probs=96.7

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceee------------------eeccCCcccccccccCc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTC------------------HSLLPSVVSSSLLIRTL   87 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~------------------~~~~~~~~~~~~~~~~~   87 (174)
                      ..+..++.+.+||+.++++.++++.+.+|++++++.||+||++.+                  +.+.+.....+.+.++.
T Consensus       323 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~  402 (570)
T 4gr5_A          323 EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLK  402 (570)
T ss_dssp             GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSC
T ss_pred             hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCC
Confidence            346678999999999999999999999999999999999998632                  22223333334455677


Q ss_pred             ccccCCcCeEEe--CcccccccCCcccccccccC--------CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChH
Q 030653           88 SMWVAVLGSKFV--KLISAGYVGEQEVTSATLLP--------DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPA  155 (174)
Q Consensus        88 ~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~--------~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~  155 (174)
                      .++.++.|||++  |+++.|||++|+.|+++|..        ++||+|||+|++  ||+|+|+||+||+||++|+||+|.
T Consensus       403 ~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~  482 (570)
T 4gr5_A          403 PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPG  482 (570)
T ss_dssp             BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------
T ss_pred             CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHH
Confidence            888899999999  99999999999999998843        379999999999  999999999999999999999999


Q ss_pred             HHHHHHhcCCCcceEEEeC
Q 030653          156 ELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       156 eVE~~l~~~~~V~~~~Vvg  174 (174)
                      |||++|.+||+|.+|+|+|
T Consensus       483 eIE~~l~~~p~V~~a~Vv~  501 (570)
T 4gr5_A          483 EVEARLVGHPAVRQAAVLA  501 (570)
T ss_dssp             -------------------
T ss_pred             HHHHHHhcCCCcceEEEEE
Confidence            9999999999999999985

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.96  E-value=3.4e-30  Score=221.66  Aligned_cols=148  Identities=20%  Similarity=0.254  Sum_probs=127.5

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec---------------cCCc-ccccccccCccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL---------------LPSV-VSSSLLIRTLSM   89 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~---------------~~~~-~~~~~~~~~~~~   89 (174)
                      ..+..++.+.+||+.++++..+++++.+ ++++++.||+||+......               .+.. .....+..+..+
T Consensus       295 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~  373 (539)
T 1mdb_A          295 DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV  373 (539)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBC
T ss_pred             CCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCC
Confidence            3567889999999999999999999988 5899999999996533221               1111 122234456677


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      +.++.|||++  |++++|||++|+.|++.|..+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+||
T Consensus       374 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p  453 (539)
T 1mdb_A          374 KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHP  453 (539)
T ss_dssp             CTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTST
T ss_pred             cCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCC
Confidence            8899999999  99999999999999999988999999999999  8999999999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      +|.+|+|+|
T Consensus       454 ~V~~a~vv~  462 (539)
T 1mdb_A          454 AVHDAAMVS  462 (539)
T ss_dssp             TEEEEEEEE
T ss_pred             CcceEEEEe
Confidence            999999985

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.96  E-value=1.5e-30  Score=224.30  Aligned_cols=149  Identities=32%  Similarity=0.466  Sum_probs=94.8

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee--------------ccCCccccccc-ccCcccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS--------------LLPSVVSSSLL-IRTLSMW   90 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~--------------~~~~~~~~~~~-~~~~~~~   90 (174)
                      ..+..++.+.++|+.+++++.+++++.++...+++.||+||++....              +.+.......+ ..+..++
T Consensus       304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~  383 (550)
T 3rix_A          304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLG  383 (550)
T ss_dssp             SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCC
T ss_pred             cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCC
Confidence            44677899999999999999999999998878999999999874433              22333333333 3456778


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  |+++.|||++|+.|++.|+.+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+||+
T Consensus       384 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~  463 (550)
T 3rix_A          384 VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN  463 (550)
T ss_dssp             TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------------------------
T ss_pred             CCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCC
Confidence            899999999  99999999999999999988999999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+|+|+|
T Consensus       464 V~~a~vv~  471 (550)
T 3rix_A          464 IFDAGVAG  471 (550)
T ss_dssp             --------
T ss_pred             cceEEEEE
Confidence            99999875

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.96  E-value=1.5e-29  Score=219.83  Aligned_cols=146  Identities=18%  Similarity=0.221  Sum_probs=127.2

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee--------------eccCCcccccccccCcccccC
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH--------------SLLPSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~--------------~~~~~~~~~~~~~~~~~~~~~   92 (174)
                      .+..++.+.++|+.+++++++++++.+ ++++++.||+||++.+.              .+.+.......+.++..++.+
T Consensus       339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g  417 (580)
T 3etc_A          339 NFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVG  417 (580)
T ss_dssp             CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTT
T ss_pred             CCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCC
Confidence            346789999999999999999999876 67899999999986432              223333344445567788889


Q ss_pred             CcCeEEe-------CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhc
Q 030653           93 VLGSKFV-------KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLS  163 (174)
Q Consensus        93 ~~Gel~v-------~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~  163 (174)
                      +.|||++       +++++|||++|+.|++.| .+|||+|||+|++  ||+|+|+||+||+||++|+||+|.|||++|.+
T Consensus       418 ~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~  496 (580)
T 3etc_A          418 EEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQ  496 (580)
T ss_dssp             CCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTT
T ss_pred             CceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence            9999998       469999999999999999 5899999999999  99999999999999999999999999999999


Q ss_pred             CCCcceEEEeC
Q 030653          164 HPEMVDAAVIP  174 (174)
Q Consensus       164 ~~~V~~~~Vvg  174 (174)
                      ||+|.+|+|+|
T Consensus       497 ~p~V~~a~Vvg  507 (580)
T 3etc_A          497 HPAVLECAITG  507 (580)
T ss_dssp             STTEEEEEEEE
T ss_pred             CCCeeeEEEEe
Confidence            99999999985

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.96  E-value=6.2e-29  Score=214.06  Aligned_cols=148  Identities=22%  Similarity=0.298  Sum_probs=114.9

Q ss_pred             CccccceEEEccccCChhhHHHHHhh----C--CCCeEEcCCCCCcceeeeecc---------------CCccccccc-c
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHT----L--PTRRLLLPSVLSSSSTCHSLL---------------PSVVSSSLL-I   84 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~----~--p~~~i~~~yg~te~~~~~~~~---------------~~~~~~~~~-~   84 (174)
                      .+..++.+.+|++.+++++.+.+.+.    +  |++++++.||+||++.+....               +.......+ .
T Consensus       294 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  373 (549)
T 3g7s_A          294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLE  373 (549)
T ss_dssp             CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSS
T ss_pred             CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCC
Confidence            45678999999999999999999987    4  458999999999987543322               222222333 4


Q ss_pred             cCcccccCCcCeEEe--CcccccccCCccccccccc--CCC--eEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           85 RTLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL--PDG--WMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        85 ~~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~--~~g--~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      .+..++.++.|||++  |++++|||++|+.|++.|.  .+|  ||+|||+|++  ||+|+|+||+||+||++|++|+|.|
T Consensus       374 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  453 (549)
T 3g7s_A          374 DGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE  453 (549)
T ss_dssp             SCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHH
T ss_pred             CCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHH
Confidence            566778899999999  9999999999999999883  566  9999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|.+||+|.+|+|+|
T Consensus       454 IE~~l~~~p~V~~a~Vv~  471 (549)
T 3g7s_A          454 LEALLMKHEAVMDVAVIG  471 (549)
T ss_dssp             HHHHHTTSTTEEEEEEEC
T ss_pred             HHHHHHhCCCeeeEEEEe
Confidence            999999999999999986

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.96  E-value=8.1e-29  Score=216.24  Aligned_cols=147  Identities=18%  Similarity=0.224  Sum_probs=128.4

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------CCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.+||+.+++.+.+++.+.+ ++++++.||.||++.+....                +.......+..+..++
T Consensus       300 ~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p  378 (617)
T 3rg2_A          300 QLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLP  378 (617)
T ss_dssp             TTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCC
T ss_pred             cCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCC
Confidence            467789999999999999999999987 68999999999987443221                1112222355567888


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  |++++|||++|+.|+++|..++||+|||+|++  ||+|+|+||+||+||++|+||+|.|||++|.+||+
T Consensus       379 ~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~  458 (617)
T 3rg2_A          379 QGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPA  458 (617)
T ss_dssp             TTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTT
T ss_pred             CCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCC
Confidence            899999999  99999999999999999988999999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|++
T Consensus       459 V~~a~vv~  466 (617)
T 3rg2_A          459 VIYAALVS  466 (617)
T ss_dssp             EEEEEEEE
T ss_pred             eeEEEEEe
Confidence            99999874

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.96  E-value=1.1e-29  Score=218.63  Aligned_cols=147  Identities=20%  Similarity=0.231  Sum_probs=97.1

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------CCcccccccccCcccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIRTLSMW   90 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~~~~~~   90 (174)
                      .+..++.+.+||+.+++++.+.+++.+ ++++++.||+||++......                +.......+..+..++
T Consensus       305 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~  383 (544)
T 3o83_A          305 QIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVP  383 (544)
T ss_dssp             HHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCC
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCC
Confidence            456789999999999999999999988 68999999999986433211                2222233355667788


Q ss_pred             cCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           91 VAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        91 ~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      .++.|||++  |+++.|||++|+.|++.|..+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+||+
T Consensus       384 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~  463 (544)
T 3o83_A          384 EGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPE  463 (544)
T ss_dssp             TTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC------------------------
T ss_pred             CCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCC
Confidence            899999999  99999999999999999988999999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|+|
T Consensus       464 V~~a~vv~  471 (544)
T 3o83_A          464 VMHAALVA  471 (544)
T ss_dssp             --------
T ss_pred             ccEEEEEe
Confidence            99999875

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.96  E-value=9.1e-29  Score=210.92  Aligned_cols=146  Identities=18%  Similarity=0.206  Sum_probs=123.8

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-----------cCCcccccccccC---cccccC
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-----------LPSVVSSSLLIRT---LSMWVA   92 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~   92 (174)
                      .+..++.+.++|+.+++++.+.+++.++ ..+++.||+||+..+...           .+.......+..+   ..++.+
T Consensus       270 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g  348 (504)
T 1t5h_X          270 KLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANG  348 (504)
T ss_dssp             CCTTCCEEEECCTTCCHHHHHHHHHHCC-SEEEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTT
T ss_pred             cCccccEEEEcCCcCCHHHHHHHHHhcC-cceeeeeccccccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCC
Confidence            4577899999999999999999999986 689999999998432221           1111122223333   567778


Q ss_pred             CcCeEEe---CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCc
Q 030653           93 VLGSKFV---KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEM  167 (174)
Q Consensus        93 ~~Gel~v---~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V  167 (174)
                      +.|||++   |.++.|||++|+.|++.| .+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+||+|
T Consensus       349 ~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V  427 (504)
T 1t5h_X          349 EEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV  427 (504)
T ss_dssp             CCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTE
T ss_pred             CcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCc
Confidence            9999998   789999999999999999 6899999999999  999999999999999999999999999999999999


Q ss_pred             ceEEEeC
Q 030653          168 VDAAVIP  174 (174)
Q Consensus       168 ~~~~Vvg  174 (174)
                      .+|+|+|
T Consensus       428 ~~a~Vv~  434 (504)
T 1t5h_X          428 TEVVVIG  434 (504)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEE
Confidence            9999985

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.95  E-value=2.6e-29  Score=215.21  Aligned_cols=146  Identities=21%  Similarity=0.246  Sum_probs=122.2

Q ss_pred             cCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc----------------CCcccccccccCcc
Q 030653           25 SNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIRTLS   88 (174)
Q Consensus        25 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~~~~   88 (174)
                      ...+..++.+.+||+.+++++.+.+.+.  ++++++.||+||++......                +.......+..+..
T Consensus       280 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~  357 (517)
T 3r44_A          280 ELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVI  357 (517)
T ss_dssp             HCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCE
T ss_pred             cCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCC
Confidence            3455678999999999999999999886  78999999999986432221                11111122333444


Q ss_pred             cccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653           89 MWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus        89 ~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      ++.+ .|||++  |+++.|||++|+.|++.| .+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+|
T Consensus       358 ~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~  435 (517)
T 3r44_A          358 REHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGV  435 (517)
T ss_dssp             ESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTS
T ss_pred             CCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhC
Confidence            4555 799999  999999999999999999 6899999999999  999999999999999999999999999999999


Q ss_pred             CCcceEEEeC
Q 030653          165 PEMVDAAVIP  174 (174)
Q Consensus       165 ~~V~~~~Vvg  174 (174)
                      |+|.+|+|+|
T Consensus       436 p~V~~~~Vv~  445 (517)
T 3r44_A          436 PGVSEVAVIG  445 (517)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEeEEEEEe
Confidence            9999999985

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.95  E-value=5.3e-29  Score=212.83  Aligned_cols=146  Identities=27%  Similarity=0.362  Sum_probs=121.5

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeecc--------------CCcccccccccCccccc--
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLL--------------PSVVSSSLLIRTLSMWV--   91 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~--------------~~~~~~~~~~~~~~~~~--   91 (174)
                      +..++.+.+|++.+++...+++.+.+ +.++++.||+||++......              +.......+.++..++.  
T Consensus       271 l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~  349 (505)
T 3nyq_A          271 LAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALD  349 (505)
T ss_dssp             HHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCC
T ss_pred             cccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCC
Confidence            45578999999999999999999876 67999999999987543322              22222233444444444  


Q ss_pred             -CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEecc-CCeEEECcEEeChHHHHHHHhcCC
Q 030653           92 -AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGL-KDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        92 -~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~-~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                       ++.|||++  |+++.|||++|+.|+++|..++||+|||+|++  ||+|+|+||+ ||+||++|++|+|.|||++|.+||
T Consensus       350 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p  429 (505)
T 3nyq_A          350 GESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHP  429 (505)
T ss_dssp             SCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTST
T ss_pred             CCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCc
Confidence             78999999  99999999999999999988999999999999  9999999997 699999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      +|.+|+|+|
T Consensus       430 ~V~~a~Vv~  438 (505)
T 3nyq_A          430 EVREAAVTG  438 (505)
T ss_dssp             TEEEEEEEE
T ss_pred             CccEEEEEe
Confidence            999999985

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.95  E-value=2e-29  Score=229.97  Aligned_cols=149  Identities=30%  Similarity=0.439  Sum_probs=99.7

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-------------------cCCccccccc-cc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-------------------LPSVVSSSLL-IR   85 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-------------------~~~~~~~~~~-~~   85 (174)
                      ..+..++.+.+|++.+++++.+.+.+.+|++++++.||+||++.+...                   .+.......+ ..
T Consensus       341 ~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~  420 (979)
T 3tsy_A          341 YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDT  420 (979)
T ss_dssp             SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTS
T ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCC
Confidence            346778999999999999999999999999999999999998744221                   1222222233 23


Q ss_pred             CcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHH
Q 030653           86 TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLL  161 (174)
Q Consensus        86 ~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l  161 (174)
                      +..++.++.|||++  |++++|||++|+.|++.|+.+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|
T Consensus       421 ~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l  500 (979)
T 3tsy_A          421 GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALL  500 (979)
T ss_dssp             CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------
T ss_pred             CCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHH
Confidence            56778899999999  99999999999999999988999999999999  999999999999999999999999999999


Q ss_pred             hcCCCcceEEEeC
Q 030653          162 LSHPEMVDAAVIP  174 (174)
Q Consensus       162 ~~~~~V~~~~Vvg  174 (174)
                      .+||+|.+++|+|
T Consensus       501 ~~~p~V~~~~Vv~  513 (979)
T 3tsy_A          501 IGHPDITDVAVVA  513 (979)
T ss_dssp             -------------
T ss_pred             HhCCCcceEEEEE
Confidence            9999999999875

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.95  E-value=8e-29  Score=213.19  Aligned_cols=146  Identities=25%  Similarity=0.310  Sum_probs=112.5

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC-------------------------Cccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP-------------------------SVVSSS   81 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~-------------------------~~~~~~   81 (174)
                      .+..++.+.+||+.+++++.+++ +.+ ++++++.||+||++.+.....                         ......
T Consensus       291 ~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i  368 (541)
T 1v25_A          291 RLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRV  368 (541)
T ss_dssp             CCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEE
T ss_pred             cchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEE
Confidence            45678999999999999999999 554 789999999999875433221                         111122


Q ss_pred             ccccCccccc--CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChH
Q 030653           82 LLIRTLSMWV--AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPA  155 (174)
Q Consensus        82 ~~~~~~~~~~--~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~  155 (174)
                      .+.++..++.  ++.|||++  |+++.|||++|+.|++.|..+|||+|||+|++  ||+|+|+||+||+||++|++|+|.
T Consensus       369 ~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~  448 (541)
T 1v25_A          369 ADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSV  448 (541)
T ss_dssp             ECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHH
T ss_pred             ECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHH
Confidence            2334445553  36899999  99999999999999999977999999999999  999999999999999999999999


Q ss_pred             HHHHHHhcCCCcceEEEeC
Q 030653          156 ELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       156 eVE~~l~~~~~V~~~~Vvg  174 (174)
                      |||++|.+||+|.+|+|+|
T Consensus       449 eIE~~l~~~p~V~~a~Vv~  467 (541)
T 1v25_A          449 DLENALMGHPKVKEAAVVA  467 (541)
T ss_dssp             HHHCC----------CEEE
T ss_pred             HHHHHHHhCCCceEEEEEE
Confidence            9999999999999999974

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.95  E-value=1.5e-28  Score=212.65  Aligned_cols=145  Identities=17%  Similarity=0.164  Sum_probs=122.0

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec-----------------cCCcccccccccCccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL-----------------LPSVVSSSLLIRTLSM   89 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~-----------------~~~~~~~~~~~~~~~~   89 (174)
                      .+..++.+.++|+.++++..+++++.   .++++.||+||++.+...                 .+.......+..+..+
T Consensus       291 ~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~  367 (563)
T 1amu_A          291 RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLK  367 (563)
T ss_dssp             TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBC
T ss_pred             ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCC
Confidence            45678999999999999999988774   789999999998643221                 1122222234456677


Q ss_pred             ccCCcCeEEe--CcccccccCCcccccccccC------CCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLLP------DGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~------~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      +.++.|||++  |++++|||++|+.|+++|..      ++||+|||+|++  ||+|+|+||+||+||++|++|+|.|||+
T Consensus       368 ~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~  447 (563)
T 1amu_A          368 SVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVES  447 (563)
T ss_dssp             CTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHH
T ss_pred             CCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHH
Confidence            8899999999  99999999999999988842      469999999999  9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      +|.+||+|.+|+|++
T Consensus       448 ~l~~~p~V~~a~Vv~  462 (563)
T 1amu_A          448 ILLKHMYISETAVSV  462 (563)
T ss_dssp             HHTTSTTEEEEEEEE
T ss_pred             HHHhCCCcceEEEEE
Confidence            999999999999974

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.95  E-value=4.3e-28  Score=210.13  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=125.1

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC--------------CcccccccccCcccccC
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP--------------SVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~--------------~~~~~~~~~~~~~~~~~   92 (174)
                      .+..++.+.++|+.++++.++++++.+ ++++++.||+||++.+....+              .......+.++..++.+
T Consensus       320 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G  398 (570)
T 3c5e_A          320 KFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPG  398 (570)
T ss_dssp             CCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTT
T ss_pred             ccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCC
Confidence            356789999999999999999999887 688999999999875433221              11222334456677889


Q ss_pred             CcCeEEe-------CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhc
Q 030653           93 VLGSKFV-------KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLS  163 (174)
Q Consensus        93 ~~Gel~v-------~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~  163 (174)
                      +.|||++       |+++.|||++|+.|++.| .++||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+
T Consensus       399 ~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~  477 (570)
T 3c5e_A          399 TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME  477 (570)
T ss_dssp             CCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHT
T ss_pred             CCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence            9999987       478999999999999998 4899999999999  99999999999999999999999999999999


Q ss_pred             CCCcceEEEeC
Q 030653          164 HPEMVDAAVIP  174 (174)
Q Consensus       164 ~~~V~~~~Vvg  174 (174)
                      ||+|.+|+|++
T Consensus       478 ~p~V~~a~Vv~  488 (570)
T 3c5e_A          478 HPAVVETAVIS  488 (570)
T ss_dssp             STTEEEEEEEE
T ss_pred             CCCcceEEEEe
Confidence            99999999985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.95  E-value=9.5e-28  Score=210.95  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=124.7

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCC--CCeEEcCCCCCcceeeeecc----------------CCcccccccccCcc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLP--TRRLLLPSVLSSSSTCHSLL----------------PSVVSSSLLIRTLS   88 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p--~~~i~~~yg~te~~~~~~~~----------------~~~~~~~~~~~~~~   88 (174)
                      .+..++.+.++|+.++++..+.+.+.++  ++.+++.||.||++.+....                +.......+.++..
T Consensus       376 ~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~  455 (652)
T 1pg4_A          376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHP  455 (652)
T ss_dssp             CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCB
T ss_pred             CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCC
Confidence            4577899999999999999999999886  48899999999987433221                11112223445667


Q ss_pred             cccCCcCeEEe----CcccccccCCccccccccc--CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHH
Q 030653           89 MWVAVLGSKFV----KLISAGYVGEQEVTSATLL--PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHL  160 (174)
Q Consensus        89 ~~~~~~Gel~v----~~v~~gY~~~~~~t~~~~~--~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~  160 (174)
                      ++.++.|||++    |++++|||++++.+.+.+.  .+|||+|||+|++  ||+|+|+||+||+||++|+||+|.|||++
T Consensus       456 v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~  535 (652)
T 1pg4_A          456 QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA  535 (652)
T ss_dssp             CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHH
T ss_pred             cCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHH
Confidence            77788999998    4799999999998887763  3789999999999  99999999999999999999999999999


Q ss_pred             HhcCCCcceEEEeC
Q 030653          161 LLSHPEMVDAAVIP  174 (174)
Q Consensus       161 l~~~~~V~~~~Vvg  174 (174)
                      |.+||.|.+|+|+|
T Consensus       536 l~~~p~V~ea~Vvg  549 (652)
T 1pg4_A          536 LVAHPKIAEAAVVG  549 (652)
T ss_dssp             HHHSTTEEEEEEEE
T ss_pred             HHhCCCcceEEEEE
Confidence            99999999999985

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.95  E-value=2.7e-28  Score=208.97  Aligned_cols=143  Identities=17%  Similarity=0.193  Sum_probs=120.5

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee--------------eccCCcccccccccCcccccCCcC
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH--------------SLLPSVVSSSLLIRTLSMWVAVLG   95 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~G   95 (174)
                      .++.+.++|+.++++..+++++.+ ++++++.||+||++.+.              .+.+.......+..+..++.++.|
T Consensus       301 ~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~G  379 (529)
T 2v7b_A          301 AIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVG  379 (529)
T ss_dssp             CCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCcc
Confidence            688999999999999999999987 68899999999985332              222232333345556678889999


Q ss_pred             eEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEE
Q 030653           96 SKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAA  171 (174)
Q Consensus        96 el~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~  171 (174)
                      ||++  |+++.|||++++.|++.|. ++||+|||+|++  ||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++
T Consensus       380 El~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~  458 (529)
T 2v7b_A          380 DLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAA  458 (529)
T ss_dssp             EEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEE
T ss_pred             EEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEE
Confidence            9999  9999999999999999984 899999999999  9999999999999999999999999999999999999999


Q ss_pred             EeC
Q 030653          172 VIP  174 (174)
Q Consensus       172 Vvg  174 (174)
                      |+|
T Consensus       459 vv~  461 (529)
T 2v7b_A          459 VVG  461 (529)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.95  E-value=7.4e-28  Score=225.15  Aligned_cols=147  Identities=20%  Similarity=0.225  Sum_probs=125.6

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeec------------------cCCcccccccccCccc
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSL------------------LPSVVSSSLLIRTLSM   89 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~------------------~~~~~~~~~~~~~~~~   89 (174)
                      +..++.+.+||+.++++.++++.+.+|+.++++.||.||++.+...                  .++....+.+..+..+
T Consensus       719 ~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~  798 (1304)
T 2vsq_A          719 MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQ  798 (1304)
T ss_dssp             HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBC
T ss_pred             CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCC
Confidence            4568999999999999999999999999999999999998743211                  1111112224455677


Q ss_pred             ccCCcCeEEe--CcccccccCCccccccccc------CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLL------PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~------~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      +.|+.|||++  |++++||+++|+.|+++|.      +++||+|||+|++  ||+|+|+||+||+||++|+||+|.|||+
T Consensus       799 p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~  878 (1304)
T 2vsq_A          799 PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEK  878 (1304)
T ss_dssp             CTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHH
T ss_pred             CCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHH
Confidence            8899999999  9999999999999999984      2459999999999  9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      +|.+||+|.+|+|++
T Consensus       879 ~l~~~p~V~~a~V~~  893 (1304)
T 2vsq_A          879 QLQEYPGVKDAVVVA  893 (1304)
T ss_dssp             HHHHSSSCCEEEEEE
T ss_pred             HHHhCCCCceEEEEE
Confidence            999999999999874

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.94  E-value=2.2e-28  Score=208.59  Aligned_cols=145  Identities=24%  Similarity=0.284  Sum_probs=92.8

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-------------ccCCcccccccccCcccccC
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-------------LLPSVVSSSLLIRTLSMWVA   92 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-------------~~~~~~~~~~~~~~~~~~~~   92 (174)
                      ..+..++.+..++..   ...+++.+.+|++++++.||+||++.+..             +.+.......+.++..++.+
T Consensus       269 ~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g  345 (509)
T 3ivr_A          269 AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPG  345 (509)
T ss_dssp             GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGSTTSCCEECTTCEEEEECTTSCBCCTT
T ss_pred             cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccCCCcccccCCCcEEEEECCCCCCCCCC
Confidence            345667888877765   88999999999999999999999875432             22233333445567788889


Q ss_pred             CcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEecc--CCeEEECcEEeChHHHHHHHhcCCC
Q 030653           93 VLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGL--KDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        93 ~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~--~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      +.|||++  |+++.|||++|+.|++.| .+|||+|||+|++  ||+++|+||+  +|+||++|++|+|.|||++|.+||+
T Consensus       346 ~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~  424 (509)
T 3ivr_A          346 EVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPA  424 (509)
T ss_dssp             CCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC---------------------------
T ss_pred             CceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCC
Confidence            9999999  999999999999999999 4899999999999  9999999999  9999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+|+|+|
T Consensus       425 V~~a~vv~  432 (509)
T 3ivr_A          425 IADAVVIG  432 (509)
T ss_dssp             --------
T ss_pred             ceeEEEEe
Confidence            99999985

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.94  E-value=2.1e-27  Score=204.76  Aligned_cols=147  Identities=15%  Similarity=0.167  Sum_probs=90.3

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeee---------------eccCCccccccc-ccCccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCH---------------SLLPSVVSSSLL-IRTLSM   89 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~---------------~~~~~~~~~~~~-~~~~~~   89 (174)
                      ..+..++.+.+|++.++++..+.+++ .+++.+++.||+||++...               .+.+.......+ ..+..+
T Consensus       291 ~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~  369 (562)
T 3ite_A          291 EDAPHLVYLGVGGEKMTPRTQQIWSS-SDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHV  369 (562)
T ss_dssp             GGSTTCCEEEEESSCCCHHHHHHHTT-CSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBC
T ss_pred             cccCceEEEEEecCCCCHHHHHHHhh-CCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCC
Confidence            34567899999999999999999887 4578999999999986322               122222222233 234467


Q ss_pred             ccCCcCeEEe--CcccccccCCccccccccc-CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653           90 WVAVLGSKFV--KLISAGYVGEQEVTSATLL-PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus        90 ~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~-~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      +.++.|||++  |++++|||++|+.|+..+. .++||+|||+|++  ||+|+|+||+||+||++|+||+|.|||++|.+|
T Consensus       370 ~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~  449 (562)
T 3ite_A          370 KKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSL  449 (562)
T ss_dssp             CTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------
T ss_pred             CCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhc
Confidence            8899999999  9999999999998887652 2349999999999  999999999999999999999999999999998


Q ss_pred             -CCcceEEEe
Q 030653          165 -PEMVDAAVI  173 (174)
Q Consensus       165 -~~V~~~~Vv  173 (174)
                       |.+.+++|+
T Consensus       450 ~~~~~~~~v~  459 (562)
T 3ite_A          450 SPTDIDVVTL  459 (562)
T ss_dssp             ----------
T ss_pred             CCCceeEEEE
Confidence             777777765

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.94  E-value=5.1e-27  Score=206.81  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=123.6

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCC--CCeEEcCCCCCcceeeeecc-----------------CCcccccccc-cC
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLP--TRRLLLPSVLSSSSTCHSLL-----------------PSVVSSSLLI-RT   86 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p--~~~i~~~yg~te~~~~~~~~-----------------~~~~~~~~~~-~~   86 (174)
                      .+..++.+.++|++++++..+.+.+.++  ++.+++.||.||++.+....                 +.....+.+. .+
T Consensus       382 ~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g  461 (663)
T 1ry2_A          382 SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTG  461 (663)
T ss_dssp             CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSST
T ss_pred             CcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCC
Confidence            4577899999999999999999999885  48999999999987432211                 1111122233 45


Q ss_pred             ccccc-CCcCeEEe----CcccccccCCccccccccc--CCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHH
Q 030653           87 LSMWV-AVLGSKFV----KLISAGYVGEQEVTSATLL--PDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAEL  157 (174)
Q Consensus        87 ~~~~~-~~~Gel~v----~~v~~gY~~~~~~t~~~~~--~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eV  157 (174)
                      ..++. ++.|||++    |++++|||++++.+.+.|.  .+|||+|||+|++  ||+|+|+||+||+||++|+||+|.||
T Consensus       462 ~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI  541 (663)
T 1ry2_A          462 EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEI  541 (663)
T ss_dssp             TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHH
T ss_pred             CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHH
Confidence            56666 78899998    4799999999999888774  3789999999999  99999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEeC
Q 030653          158 EHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       158 E~~l~~~~~V~~~~Vvg  174 (174)
                      |++|.+||.|.+|+|+|
T Consensus       542 E~~l~~~p~V~ea~Vvg  558 (663)
T 1ry2_A          542 EAAIIEDPIVAECAVVG  558 (663)
T ss_dssp             HHHHHSSTTEEEEEEEC
T ss_pred             HHHHHhCCCcceEEEEE
Confidence            99999999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.93  E-value=1.4e-27  Score=206.45  Aligned_cols=149  Identities=16%  Similarity=0.159  Sum_probs=122.0

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCC-----CCeEEcCCCCCcceeeeeccCC------------------------
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLP-----TRRLLLPSVLSSSSTCHSLLPS------------------------   76 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p-----~~~i~~~yg~te~~~~~~~~~~------------------------   76 (174)
                      ..+..++.+.++++.+++++++++.+.++     +.++++.||+||++.+....+.                        
T Consensus       286 ~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (590)
T 3kxw_A          286 LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADD  365 (590)
T ss_dssp             CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCT
T ss_pred             CCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccC
Confidence            35677899999999999999999998874     5689999999998754332110                        


Q ss_pred             ---------------ccccccccc-CcccccCCcCeEEe--CcccccccCCcccccccccC------CC--eEecCCeee
Q 030653           77 ---------------VVSSSLLIR-TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLP------DG--WMRTGDLCY  130 (174)
Q Consensus        77 ---------------~~~~~~~~~-~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~------~g--~~~TGD~g~  130 (174)
                                     ......+.+ +..++.++.|||++  |+++.|||++|+.|+++|..      +|  ||+|||+|+
T Consensus       366 ~~~~~~~~~~~G~p~~~v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~  445 (590)
T 3kxw_A          366 NSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF  445 (590)
T ss_dssp             TCTTCEEEECCCEESSEEEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEE
T ss_pred             CCCCcceEeccCCCCCCeEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEE
Confidence                           001112223 45677889999999  99999999999999999843      24  999999999


Q ss_pred             e-CCeEEEEeccCCeEEECcEEeChHHHHHHH-hcCCCcc--eEEEeC
Q 030653          131 E-DSFLFIVDGLKDLVKYKGCQVAPAELEHLL-LSHPEMV--DAAVIP  174 (174)
Q Consensus       131 ~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l-~~~~~V~--~~~Vvg  174 (174)
                      + ||+|+|+||+||+||++|+||+|.|||++| ..+|.|.  +|+|++
T Consensus       446 ~ddG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~  493 (590)
T 3kxw_A          446 LHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFV  493 (590)
T ss_dssp             EETTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEE
T ss_pred             EECCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEE
Confidence            9 999999999999999999999999999999 8899998  788764

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.93  E-value=1.8e-26  Score=196.38  Aligned_cols=141  Identities=14%  Similarity=0.182  Sum_probs=114.6

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcc-----cccc-cccCcc-----cccCCcCeEE
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVV-----SSSL-LIRTLS-----MWVAVLGSKF   98 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~-----~~~~-~~~~~~-----~~~~~~Gel~   98 (174)
                      .++.+.++|+.++++..+.+.+.  ++++++.||+||++..........     .... +..+.+     ...++.|||+
T Consensus       275 ~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~  352 (501)
T 3ipl_A          275 NLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELM  352 (501)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEE
T ss_pred             cccEEEEeCCCCCHHHHHHHHHh--CCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEE
Confidence            68899999999999999999873  789999999999865332211110     0000 111111     1135679999


Q ss_pred             e--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCCcceEEEeC
Q 030653           99 V--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus        99 v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      +  |.+++|||++++.|.. + .+|||+|||+|++  ||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|+|
T Consensus       353 v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~  430 (501)
T 3ipl_A          353 IKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVG  430 (501)
T ss_dssp             EESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             EeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence            9  9999999999998887 5 6899999999999  9999999999999999999999999999999999999999985

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.87  E-value=1.7e-22  Score=169.19  Aligned_cols=135  Identities=14%  Similarity=0.099  Sum_probs=108.2

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcc-ee-eeecc----------CCccccccc-ccCcccccCCc
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSS-ST-CHSLL----------PSVVSSSLL-IRTLSMWVAVL   94 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~-~~-~~~~~----------~~~~~~~~~-~~~~~~~~~~~   94 (174)
                      +..++.+.+||+.+++++.+.+++.| ++++++.||+||+ +. +....          +.......+ ..+..++.++.
T Consensus       205 ~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~  283 (436)
T 3qov_A          205 ETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEI  283 (436)
T ss_dssp             SSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEEGGGTEEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCC
T ss_pred             cCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcchhhcCCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCc
Confidence            46789999999999999999999988 7899999999998 43 21111          111122234 45667788999


Q ss_pred             CeEEeCcccccccCCcccccccccCCCeEecCCeeee--CC------e---EEEEeccCCeEEECcEEeChHHHHHHHhc
Q 030653           95 GSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DS------F---LFIVDGLKDLVKYKGCQVAPAELEHLLLS  163 (174)
Q Consensus        95 Gel~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG------~---l~~~GR~~d~i~~~G~~v~p~eVE~~l~~  163 (174)
                      |||++.+          .+...+ .++||+|||+|++  ||      +   ++|+||.||+||++|++|+|.+||++|.+
T Consensus       284 Gel~v~~----------~~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~  352 (436)
T 3qov_A          284 GELVLTT----------LDREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQ  352 (436)
T ss_dssp             EEEEEEE----------SSCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTT
T ss_pred             eEEEEec----------cCcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHh
Confidence            9999743          233344 5789999999999  66      4   69999999999999999999999999999


Q ss_pred             CCCcceEEEeC
Q 030653          164 HPEMVDAAVIP  174 (174)
Q Consensus       164 ~~~V~~~~Vvg  174 (174)
                      ||+|.+++|++
T Consensus       353 ~p~v~~~~vv~  363 (436)
T 3qov_A          353 FPELGSNYLIT  363 (436)
T ss_dssp             CTTEEEEEEEE
T ss_pred             CcCcCCcEEEE
Confidence            99999998874

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.86  E-value=5.6e-22  Score=163.03  Aligned_cols=132  Identities=8%  Similarity=0.042  Sum_probs=103.0

Q ss_pred             CccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcccccccccCcccccCCcCeEEe--Ccccc
Q 030653           27 SLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSSSLLIRTLSMWVAVLGSKFV--KLISA  104 (174)
Q Consensus        27 ~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gel~v--~~v~~  104 (174)
                      .+..++.+.+||+.+++++.+++++.  ++++++.||+||++......+.             +....|++.+  |++..
T Consensus       146 ~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~~~~-------------~~~~~g~~~~~~pgv~~  210 (358)
T 4gs5_A          146 QVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVALKAL-------------NGPEASELYVFLPGIQY  210 (358)
T ss_dssp             GGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEEEEC-------------SSTTCCSCEEECTTCEE
T ss_pred             cCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeecccc-------------cccccceeeccCCCeEE
Confidence            45678999999999999999999873  7899999999998754433221             1123455555  77777


Q ss_pred             cccCCcccccc-cccCCCeEecCCeeee-CCeEEEEeccCCeEEECcEEeChHHHHHHH---hcCCCcceEEEe
Q 030653          105 GYVGEQEVTSA-TLLPDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEHLL---LSHPEMVDAAVI  173 (174)
Q Consensus       105 gY~~~~~~t~~-~~~~~g~~~TGD~g~~-dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l---~~~~~V~~~~Vv  173 (174)
                      +|.++.+.... .+..+|||+|||+|++ ++.++|+||+||+||++|+||+|.|||++|   ..||.|.+++|+
T Consensus       211 ~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv  284 (358)
T 4gs5_A          211 GVDERGCLHISGAVTNGQTVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFC  284 (358)
T ss_dssp             EECTTSEEEEESGGGTTCCEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             EecCcCceEEecccccCcceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEE
Confidence            77776664433 3456899999999999 445778899999999999999999999877   468999998876

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.84  E-value=2.1e-21  Score=162.87  Aligned_cols=135  Identities=13%  Similarity=0.035  Sum_probs=106.6

Q ss_pred             ccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcc-ee-eeeccC-C----------ccccccc-ccCcccccCC
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSS-ST-CHSLLP-S----------VVSSSLL-IRTLSMWVAV   93 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~-~~-~~~~~~-~----------~~~~~~~-~~~~~~~~~~   93 (174)
                      +..++.+.+||+.+++++.+.+.+.+ ++++++.||+||+ +. +....+ .          ......+ ..+..++.++
T Consensus       211 ~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~  289 (443)
T 2y4o_A          211 ESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGS  289 (443)
T ss_dssp             GSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEETTTTEEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTC
T ss_pred             cCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCchhhcCCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCC
Confidence            35688999999999999999999988 7899999999996 43 222111 1          1111223 2356777889


Q ss_pred             cCeEEeCcccccccCCcccccccccCCCeEecCCeeee--C-CeE-----EEEeccCCeEEECcEEeChHHHHHHHhcCC
Q 030653           94 LGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--D-SFL-----FIVDGLKDLVKYKGCQVAPAELEHLLLSHP  165 (174)
Q Consensus        94 ~Gel~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--d-G~l-----~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~  165 (174)
                      .|||++.+          .+++.+ ..+||+|||+|++  | |++     +|+||.||+||++|++|+|.+||++|.+||
T Consensus       290 ~Gel~v~~----------~t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p  358 (443)
T 2y4o_A          290 QGELVFTS----------LTKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALP  358 (443)
T ss_dssp             CEEEEEEE----------SSCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTST
T ss_pred             ceEEEEeC----------CCcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCc
Confidence            99999743          233344 5789999999999  6 987     899999999999999999999999999999


Q ss_pred             CcceEEEeC
Q 030653          166 EMVDAAVIP  174 (174)
Q Consensus       166 ~V~~~~Vvg  174 (174)
                      +|.+++|++
T Consensus       359 ~V~~~~vv~  367 (443)
T 2y4o_A          359 LLSGQFQIT  367 (443)
T ss_dssp             TEEEEEEEE
T ss_pred             CcCccEEEE
Confidence            999888763

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.83  E-value=4.4e-21  Score=160.64  Aligned_cols=134  Identities=16%  Similarity=0.022  Sum_probs=105.4

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcc-ee-eeeccCC-c----------cccccc-ccCcccccCCc
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSS-ST-CHSLLPS-V----------VSSSLL-IRTLSMWVAVL   94 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~-~~-~~~~~~~-~----------~~~~~~-~~~~~~~~~~~   94 (174)
                      ..++.+.+||+.+++++.+.+.+.+ ++++++.||+||+ +. +....+. .          .....+ ..+..++.++.
T Consensus       210 ~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~  288 (437)
T 2y27_A          210 SSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGEL  288 (437)
T ss_dssp             SSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEETTTTEEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCC
T ss_pred             CCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCchhhcCCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCc
Confidence            5688999999999999999999888 7899999999997 44 2221111 1          111123 23557778899


Q ss_pred             CeEEeCcccccccCCcccccccccCCCeEecCCeeee-C--CeE-----EEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           95 GSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-D--SFL-----FIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        95 Gel~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-d--G~l-----~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      |||++.+          .+++.+ .++||+|||+|++ +  |++     +|+||.||+||++|++|+|.+||++|.+||+
T Consensus       289 Gel~v~~----------~t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~  357 (437)
T 2y27_A          289 GELVFTS----------LTKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRA  357 (437)
T ss_dssp             EEEEEEE----------SSCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTT
T ss_pred             cEEEEec----------CCcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcC
Confidence            9999743          233444 5789999999999 3  885     8999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+++|++
T Consensus       358 V~~~~vv~  365 (437)
T 2y27_A          358 LAPHYQIV  365 (437)
T ss_dssp             BCSCCEEE
T ss_pred             cCccEEEE
Confidence            98887653

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.79  E-value=7e-20  Score=154.32  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=93.8

Q ss_pred             cCCccccceEEEccccCChhhHHHHHhhC-----CCCeEEcCCCCCcceeeeeccCC-----------------------
Q 030653           25 SNSLAFHSQIRTKSQMAEVRHHRPIPHTL-----PTRRLLLPSVLSSSSTCHSLLPS-----------------------   76 (174)
Q Consensus        25 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~-----p~~~i~~~yg~te~~~~~~~~~~-----------------------   76 (174)
                      ...+..++.+.++++.+++++++++++.+     |++++++.||+||++.+......                       
T Consensus       307 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  386 (480)
T 3t5a_A          307 GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCA  386 (480)
T ss_dssp             TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCC
T ss_pred             ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecC
Confidence            34567899999999999999999999998     67789999999998754432211                       


Q ss_pred             ---------------ccccccccc-CcccccCCcCeEEe--CcccccccCCccccccccc-----------CCCeEecCC
Q 030653           77 ---------------VVSSSLLIR-TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLL-----------PDGWMRTGD  127 (174)
Q Consensus        77 ---------------~~~~~~~~~-~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~-----------~~g~~~TGD  127 (174)
                                     ....+++.+ +..++.++.|||++  |++++|||++|+.|+++|.           .+|||+|||
T Consensus       387 ~~~~~~~~~~G~p~~~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGD  466 (480)
T 3t5a_A          387 GGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGD  466 (480)
T ss_dssp             SSSCEEEECEECCSSSEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEE
T ss_pred             CCCcceeeecCcccCCEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccc
Confidence                           111222323 46778899999999  9999999999999999984           467999999


Q ss_pred             eeee-CCeEEEEec
Q 030653          128 LCYE-DSFLFIVDG  140 (174)
Q Consensus       128 ~g~~-dG~l~~~GR  140 (174)
                      +|++ ||+|+|+||
T Consensus       467 lg~~ddG~l~~~GR  480 (480)
T 3t5a_A          467 SGFVTDGKMFIIGR  480 (480)
T ss_dssp             EEEEETTEEEECC-
T ss_pred             eeeEECCEEEEeCC
Confidence            9999 999999998

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=98.73  E-value=3.2e-09  Score=86.57  Aligned_cols=111  Identities=11%  Similarity=-0.030  Sum_probs=68.5

Q ss_pred             ccccceEEEccccCChhhHHHHH-hhCCCCeEEcCCCCCcceeeeeccC---------------Ccccccccc-cCcccc
Q 030653           28 LAFHSQIRTKSQMAEVRHHRPIP-HTLPTRRLLLPSVLSSSSTCHSLLP---------------SVVSSSLLI-RTLSMW   90 (174)
Q Consensus        28 ~~~~~~i~~~~~~~~~~~~~~l~-~~~p~~~i~~~yg~te~~~~~~~~~---------------~~~~~~~~~-~~~~~~   90 (174)
                      +..++.+.+||+.++++..+++. +.||++++++.||+||++.+....+               .....+++. .+..++
T Consensus       230 ~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp  309 (369)
T 3hgu_A          230 KQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVE  309 (369)
T ss_dssp             HHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCC
T ss_pred             cCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceeccccccCCCcccccCCCCCeEEEEECCCCCcCCC
Confidence            45688999999999999999999 9999999999999999875433222               212223343 566778


Q ss_pred             cCCcCeEEeCcccccccCCcccccccccCCCeEecCCeeee----CC-------eEEEEeccCCeEEECcE
Q 030653           91 VAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE----DS-------FLFIVDGLKDLVKYKGC  150 (174)
Q Consensus        91 ~~~~Gel~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~----dG-------~l~~~GR~~d~i~~~G~  150 (174)
                      .|+.|||++.++.+.          .+  --.|+|||++..    +|       .+..++|.++..++.|.
T Consensus       310 ~G~~GEl~vt~l~~~----------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          310 YGERGNVIVTHLSPW----------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             TTCEEEEEEEEEETT----------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             CCCceEEEEEEcCcc----------cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            899999997332211          11  123667777665    22       25556777878877764

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.31  E-value=7.3e-07  Score=77.69  Aligned_cols=116  Identities=16%  Similarity=0.026  Sum_probs=75.6

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEE-cCCCCCcceeeeecc-CC----cc----------ccccccc-------
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLL-LPSVLSSSSTCHSLL-PS----VV----------SSSLLIR-------   85 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~-~~yg~te~~~~~~~~-~~----~~----------~~~~~~~-------   85 (174)
                      .++.-+.+|+.   ...++.|+..+++..++ ..|++||+- ++... |.    ..          ..-++.+       
T Consensus       305 k~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~  380 (609)
T 4b2g_A          305 KYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLS  380 (609)
T ss_dssp             CEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred             cEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCCCCcccCceeecCCcEEEEEEeccccccccc
Confidence            34566677763   55667777777777776 899999974 33221 21    00          0001100       


Q ss_pred             ---------CcccccCCcCeEEeCcccccccCCcccccccccCCCeEecCCeeee-C-----CeEEEEeccCCeEEECcE
Q 030653           86 ---------TLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-D-----SFLFIVDGLKDLVKYKGC  150 (174)
Q Consensus        86 ---------~~~~~~~~~Gel~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-d-----G~l~~~GR~~d~i~~~G~  150 (174)
                               -.++..|..+||++.+. .|.|.              |++||++++ .     .++.|+||.++++++.|+
T Consensus       381 ~~~~~~~v~l~eVe~G~~YelViTt~-~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Ge  445 (609)
T 4b2g_A          381 RDSPPRLVDLAHVEVGKEYELVITTY-AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSD  445 (609)
T ss_dssp             SSSCCCCEEGGGCCTTCEEEEEEECT-TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSC
T ss_pred             cCCCCccccHhHcCCCCeEEEehhhh-hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEcccc
Confidence                     12344455566655221 23332              899999998 3     469999999999999999


Q ss_pred             EeChHHHHHHHhc
Q 030653          151 QVAPAELEHLLLS  163 (174)
Q Consensus       151 ~v~p~eVE~~l~~  163 (174)
                      ++++.+||+++.+
T Consensus       446 ki~~~~v~~av~~  458 (609)
T 4b2g_A          446 KTDEAELQKAVDN  458 (609)
T ss_dssp             CBCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999884

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.26  E-value=1.6e-06  Score=75.35  Aligned_cols=117  Identities=13%  Similarity=0.010  Sum_probs=76.2

Q ss_pred             cccceEEEccccCChhhHHHHHhhCCCCeEE-cCCCCCcceeeeec-cCC----cc---------c-ccccc--------
Q 030653           29 AFHSQIRTKSQMAEVRHHRPIPHTLPTRRLL-LPSVLSSSSTCHSL-LPS----VV---------S-SSLLI--------   84 (174)
Q Consensus        29 ~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~-~~yg~te~~~~~~~-~~~----~~---------~-~~~~~--------   84 (174)
                      .++.-+.+|+.   ...++.|++.+++..++ ..|++||+- ++.. .|.    ..         - .-++.        
T Consensus       300 ~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~  375 (581)
T 4eql_A          300 KYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDV  375 (581)
T ss_dssp             CEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred             cEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcE
Confidence            34666677772   66667788877888777 899999973 3321 121    00         0 00111        


Q ss_pred             -cCcccccCCcCeEEeCcccccccCCcccccccccCCCeEecCCeeee------CCeEEEEeccCCeEEECcEEeChHHH
Q 030653           85 -RTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE------DSFLFIVDGLKDLVKYKGCQVAPAEL  157 (174)
Q Consensus        85 -~~~~~~~~~~Gel~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~------dG~l~~~GR~~d~i~~~G~~v~p~eV  157 (174)
                       .-.++..|+.+||++.+. .|.|              =|++||++++      ..++.|.||.++++++.|+++++.+|
T Consensus       376 v~l~eVe~G~~YelViTt~-~GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v  440 (581)
T 4eql_A          376 VDLEDVKLGCTYEPVVTNF-AGLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDL  440 (581)
T ss_dssp             EEGGGCCTTCEEEEEEECS-SSCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHH
T ss_pred             eCHHHcCCCceEEEEEeec-ccee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHH
Confidence             112333455555654222 1222              1899999998      23699999999999999999999999


Q ss_pred             HHHHhcC
Q 030653          158 EHLLLSH  164 (174)
Q Consensus       158 E~~l~~~  164 (174)
                      |+++.+.
T Consensus       441 ~~al~~a  447 (581)
T 4eql_A          441 FKAVSQA  447 (581)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9999864

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.12  E-value=3.2e-06  Score=73.32  Aligned_cols=115  Identities=13%  Similarity=0.004  Sum_probs=74.6

Q ss_pred             ccceEEEccccCChhhHHHHHhhCCCCeEE-cCCCCCcceeeeecc-CCccc--------------cccc----------
Q 030653           30 FHSQIRTKSQMAEVRHHRPIPHTLPTRRLL-LPSVLSSSSTCHSLL-PSVVS--------------SSLL----------   83 (174)
Q Consensus        30 ~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~-~~yg~te~~~~~~~~-~~~~~--------------~~~~----------   83 (174)
                      ++.-+.+|+.   ...++.|++.+++..++ ..|.+||+- ++... |....              .-++          
T Consensus       306 ~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~  381 (581)
T 4epl_A          306 YVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGEGEEK  381 (581)
T ss_dssp             CEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEE-EEECCCTTSCTTTCCEEECTTSCEEEEEEC-------CC
T ss_pred             eEEEEeCCCh---HHHHHHHHHHcCCCccccCceecccee-eeeecCCCCCccccceeecCCcEEEEEEecccccCCCCc
Confidence            3455566643   55667777777888776 899999973 33221 21000              0000          


Q ss_pred             -ccCcccccCCcCeEEeCcccccccCCcccccccccCCCeEecCCeeee-C-----CeEEEEeccCCeEEECcEEeChHH
Q 030653           84 -IRTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYE-D-----SFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        84 -~~~~~~~~~~~Gel~v~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~-d-----G~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                       +.-.++..|+.+||++.+.. |.|              =|++||+.++ +     -++.|+||.++++++.|+++++.+
T Consensus       382 ~v~l~eve~G~~YelviTt~~-GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~  446 (581)
T 4epl_A          382 PVGLTQVKIGEEYEVVITNYA-GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERD  446 (581)
T ss_dssp             CEEGGGCCTTCEEEEEEESTT-SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHH
T ss_pred             eeeHHHcCCCCeEEEEEeecc-cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHH
Confidence             01124445566666652221 222              1899999999 3     469999999999999999999999


Q ss_pred             HHHHHhc
Q 030653          157 LEHLLLS  163 (174)
Q Consensus       157 VE~~l~~  163 (174)
                      ||+++.+
T Consensus       447 v~~al~~  453 (581)
T 4epl_A          447 LQLSVES  453 (581)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-18
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-17
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	6e-16
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-15
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	3e-13
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-11
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	9e-11

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 78.8 bits (193), Expect = 3e-18
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I+ GY G +E T + L PDG+ RTGD+    E+ ++ I D LKDL+K  G  ++  +LE+
Sbjct: 386 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 445

Query: 160 LLLSHPEMVDAAVI 173
            L+ HP++ +AAV+
Sbjct: 446 ALMGHPKVKEAAVV 459

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 77.3 bits (189), Expect = 1e-17
 Identities = 41/75 (54%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
           I +GYV   E T+A +  DGW+ +GD+ Y  ED   FIVD LK L+KYKG QVAPAELE 
Sbjct: 394 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 453

Query: 160 LLLSHPEMVDAAVIP 174
           +LL HP + DA V  
Sbjct: 454 ILLQHPNIFDAGVAG 468

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (176), Expect = 6e-16
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 105 GYVGEQEVTSATLLP--DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHL 160
                 +    T L    G+  TGD     +D +++I+  + D+V   G +++ AE+E  
Sbjct: 462 TIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAA 521

Query: 161 LLSHPEMVDAAVI 173
           ++  P + + AV+
Sbjct: 522 IIEDPIVAECAVV 534

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 71.2 bits (174), Expect = 1e-15
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 105 GYVGEQEVTSATLL--PDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHL 160
              G+ E    T          +GD     ED + +I   + D++   G ++  AE+E  
Sbjct: 472 TLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 531

Query: 161 LLSHPEMVDAAVI 173
           L++HP++ +AAV+
Sbjct: 532 LVAHPKIAEAAVV 544

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 102 ISAGYVGEQEVTSATLLP------DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVA 153
           ++ GY    E+TS   +       +   +TGD      D  +  +  + + VK +G +V 
Sbjct: 366 LARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVE 425

Query: 154 PAELEHLLLSHPEMVDAAVIP 174
             E+E +LL H  + + AV  
Sbjct: 426 LEEVESILLKHMYISETAVSV 446

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 60.0 bits (144), Expect = 1e-11
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDL--CYEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY+ + + T+  L  DGW RT D+     +  + I+  + D++   G  + P+E+E +L 
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422

Query: 163 SHPEMVDAAVIP 174
           + P + +  VI 
Sbjct: 423 TAPGVTEVVVIG 434

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 57.3 bits (137), Expect = 9e-11
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
           GY   +E  +A+   DG+ RTGD+     D ++ +    KD +   G +VA  E+E+ LL
Sbjct: 391 GYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL 450

Query: 163 SHPEMVDAAVIP 174
           +HP + DAA++ 
Sbjct: 451 AHPAVHDAAMVS 462

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.95
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.94
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.94
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.93
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.93
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.9
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.88

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.95  E-value=2.3e-28  Score=205.56  Aligned_cols=154  Identities=31%  Similarity=0.471  Sum_probs=126.7

Q ss_pred             cccccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceee--------------eeccCCcccccccc-c
Q 030653           21 KIFLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTC--------------HSLLPSVVSSSLLI-R   85 (174)
Q Consensus        21 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~--------------~~~~~~~~~~~~~~-~   85 (174)
                      .......+..++.+.+|++.+++...+.+.+.++...+++.||+||++.+              +.+.|+......+. .
T Consensus       296 ~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~  375 (541)
T d1lcia_         296 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDT  375 (541)
T ss_dssp             SCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTT
T ss_pred             ccccccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECCC
Confidence            33445566789999999999999999999999998889999999998743              33333333333332 3


Q ss_pred             CcccccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHH
Q 030653           86 TLSMWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLL  161 (174)
Q Consensus        86 ~~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l  161 (174)
                      +..++.++.|||++  |+++.||+++++.+...+..++||+|||+|++  ||+++++||.||+||++|++|+|.+||++|
T Consensus       376 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l  455 (541)
T d1lcia_         376 GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESIL  455 (541)
T ss_dssp             CCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHH
T ss_pred             CcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHH
Confidence            45677789999999  99999999999988888878999999999999  999999999999999999999999999999


Q ss_pred             hcCCCcceEEEeC
Q 030653          162 LSHPEMVDAAVIP  174 (174)
Q Consensus       162 ~~~~~V~~~~Vvg  174 (174)
                      .+||+|.+|+|+|
T Consensus       456 ~~~p~V~~~~v~~  468 (541)
T d1lcia_         456 LQHPNIFDAGVAG  468 (541)
T ss_dssp             HTSTTEEEEEEEE
T ss_pred             HhCCCccEEEEEE
Confidence            9999999999875

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.94  E-value=2e-27  Score=206.55  Aligned_cols=149  Identities=14%  Similarity=0.114  Sum_probs=125.2

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCC--CCeEEcCCCCCcceeeeec----------------cCCcccccccccCc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLP--TRRLLLPSVLSSSSTCHSL----------------LPSVVSSSLLIRTL   87 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p--~~~i~~~yg~te~~~~~~~----------------~~~~~~~~~~~~~~   87 (174)
                      ..+..++.+.++|+++++++.+.+.+.++  ++.+++.||+||++.+...                .+.......+.++.
T Consensus       371 ~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~  450 (643)
T d1pg4a_         371 TDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGH  450 (643)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCC
T ss_pred             cCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCC
Confidence            34677999999999999999999999985  6789999999998743221                12222223344566


Q ss_pred             ccccCCcCeEEe----CcccccccCCcccccccc--cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHH
Q 030653           88 SMWVAVLGSKFV----KLISAGYVGEQEVTSATL--LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEH  159 (174)
Q Consensus        88 ~~~~~~~Gel~v----~~v~~gY~~~~~~t~~~~--~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~  159 (174)
                      +++.++.|||++    |+++.|||++++.+.+.+  ..+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|||+
T Consensus       451 ~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~  530 (643)
T d1pg4a_         451 PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIES  530 (643)
T ss_dssp             BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHH
T ss_pred             CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHH
Confidence            777788999998    678999999999887765  34899999999999  9999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEeC
Q 030653          160 LLLSHPEMVDAAVIP  174 (174)
Q Consensus       160 ~l~~~~~V~~~~Vvg  174 (174)
                      +|.+||.|.||+|+|
T Consensus       531 ~l~~~p~V~eaaVvg  545 (643)
T d1pg4a_         531 ALVAHPKIAEAAVVG  545 (643)
T ss_dssp             HHHHSTTEEEEEEEE
T ss_pred             HHHhCCCcceEEEEE
Confidence            999999999999986

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=6.9e-28  Score=203.20  Aligned_cols=150  Identities=25%  Similarity=0.325  Sum_probs=117.1

Q ss_pred             cccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee-------------------------ccCCc
Q 030653           23 FLSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS-------------------------LLPSV   77 (174)
Q Consensus        23 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~-------------------------~~~~~   77 (174)
                      .....+..++.+.+|++.+++.+.+.+++.  +.++++.||+||++.+..                         +.+..
T Consensus       280 ~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~  357 (534)
T d1v25a_         280 STGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV  357 (534)
T ss_dssp             HHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC
T ss_pred             cccccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCc
Confidence            345566778999999999999999998875  468999999999875433                         22333


Q ss_pred             ccccccccCccccc--CCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEE
Q 030653           78 VSSSLLIRTLSMWV--AVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQ  151 (174)
Q Consensus        78 ~~~~~~~~~~~~~~--~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~  151 (174)
                      .....+.++.+++.  ++.|||++  |+++.||+++++.++..+..+|||+|||+|++  ||+|+++||+||+||++|++
T Consensus       358 ~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~  437 (534)
T d1v25a_         358 RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEW  437 (534)
T ss_dssp             EEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEE
T ss_pred             EEEEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEE
Confidence            33333445555544  67899999  99999999999999999988999999999999  99999999999999999999


Q ss_pred             eChHHHHHHHhcCCCcceEEEeC
Q 030653          152 VAPAELEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       152 v~p~eVE~~l~~~~~V~~~~Vvg  174 (174)
                      |+|.+||++|.+||+|.||+|+|
T Consensus       438 v~~~eIE~~l~~~~~V~~a~v~~  460 (534)
T d1v25a_         438 ISSVDLENALMGHPKVKEAAVVA  460 (534)
T ss_dssp             EEHHHHHCC----------CEEE
T ss_pred             ECHHHHHHHHHhCCCcceEEEEE
Confidence            99999999999999999999875

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-26  Score=200.47  Aligned_cols=149  Identities=15%  Similarity=0.126  Sum_probs=121.9

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCC--CeEEcCCCCCcceeeee-----------------ccCCcccccccccC
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPT--RRLLLPSVLSSSSTCHS-----------------LLPSVVSSSLLIRT   86 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~--~~i~~~yg~te~~~~~~-----------------~~~~~~~~~~~~~~   86 (174)
                      ..+..++.+.++|+++++++.+.+++.++.  ..+++.||.||++....                 +.+.......+..+
T Consensus       358 ~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~  437 (640)
T d1ry2a_         358 HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNT  437 (640)
T ss_dssp             CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSS
T ss_pred             CCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCC
Confidence            346778999999999999999999999974  46899999999874322                 22222222333333


Q ss_pred             ccc--ccCCcCeEEe----CcccccccCCcccccccc--cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           87 LSM--WVAVLGSKFV----KLISAGYVGEQEVTSATL--LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        87 ~~~--~~~~~Gel~v----~~v~~gY~~~~~~t~~~~--~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      ++.  +.+..|||++    |+++.|||++++++.+.|  +.+|||+|||+|++  ||+|+|+||+||+||++|++|+|.|
T Consensus       438 ~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~e  517 (640)
T d1ry2a_         438 GEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAE  517 (640)
T ss_dssp             TTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHH
T ss_pred             CcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHH
Confidence            322  3355699988    689999999999998887  34699999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|.+||.|.+|+|+|
T Consensus       518 IE~~l~~~p~V~~a~Vvg  535 (640)
T d1ry2a_         518 IEAAIIEDPIVAECAVVG  535 (640)
T ss_dssp             HHHHHHSSTTEEEEEEEC
T ss_pred             HHHHHHhCCCccEEEEEE
Confidence            999999999999999986

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.93  E-value=3.7e-26  Score=191.29  Aligned_cols=148  Identities=16%  Similarity=0.132  Sum_probs=121.4

Q ss_pred             ccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccC-----------------CcccccccccC
Q 030653           24 LSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLP-----------------SVVSSSLLIRT   86 (174)
Q Consensus        24 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~-----------------~~~~~~~~~~~   86 (174)
                      ....+..++.+.+++..++++.++++.+   +..+++.||+||++.+.....                 .......+..+
T Consensus       272 ~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  348 (514)
T d1amua_         272 DPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL  348 (514)
T ss_dssp             CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTS
T ss_pred             cccccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccc
Confidence            3455777899999999999988876654   678899999999875432211                 11111223455


Q ss_pred             cccccCCcCeEEe--CcccccccCCcccccccc------cCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHH
Q 030653           87 LSMWVAVLGSKFV--KLISAGYVGEQEVTSATL------LPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAE  156 (174)
Q Consensus        87 ~~~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~------~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~e  156 (174)
                      ..++.++.|||++  |.+++|||++++.+.+.|      +.++||+|||+|++  ||+|+|+||++|+||++|++|+|.+
T Consensus       349 ~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~  428 (514)
T d1amua_         349 QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE  428 (514)
T ss_dssp             CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred             eecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHH
Confidence            5677889999999  999999999999887776      34789999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEeC
Q 030653          157 LEHLLLSHPEMVDAAVIP  174 (174)
Q Consensus       157 VE~~l~~~~~V~~~~Vvg  174 (174)
                      ||++|.+||+|.+|+|+|
T Consensus       429 IE~~l~~~~~V~~~~V~~  446 (514)
T d1amua_         429 VESILLKHMYISETAVSV  446 (514)
T ss_dssp             HHHHHTTSTTEEEEEEEE
T ss_pred             HHHHHHhCCCccEEEEEE
Confidence            999999999999999975

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=5.2e-24  Score=178.29  Aligned_cols=151  Identities=19%  Similarity=0.239  Sum_probs=123.1

Q ss_pred             ccCCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeee--------------ccCCcc-cccccccCcc
Q 030653           24 LSNSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHS--------------LLPSVV-SSSLLIRTLS   88 (174)
Q Consensus        24 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~--------------~~~~~~-~~~~~~~~~~   88 (174)
                      ....+..++.+.+|++.+++...+++.+.++.......++.+++..+..              +.+... ....+..+.+
T Consensus       293 ~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~  372 (536)
T d1mdba_         293 RRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD  372 (536)
T ss_dssp             CCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCB
T ss_pred             cccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCe
Confidence            3345677899999999999999999999998665555554444433222              111111 1222445667


Q ss_pred             cccCCcCeEEe--CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcC
Q 030653           89 MWVAVLGSKFV--KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSH  164 (174)
Q Consensus        89 ~~~~~~Gel~v--~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~  164 (174)
                      ++.++.|||++  |.++.||+++++.+...+..++||+|||++++  ||+|+++||+||+||++|++|+|.+||++|.+|
T Consensus       373 ~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~  452 (536)
T d1mdba_         373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAH  452 (536)
T ss_dssp             CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTS
T ss_pred             ecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhC
Confidence            88899999999  99999999999998888888999999999999  999999999999999999999999999999999


Q ss_pred             CCcceEEEeC
Q 030653          165 PEMVDAAVIP  174 (174)
Q Consensus       165 ~~V~~~~Vvg  174 (174)
                      |+|.+|+|+|
T Consensus       453 p~V~~a~vvg  462 (536)
T d1mdba_         453 PAVHDAAMVS  462 (536)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCccEEEEEE
Confidence            9999999985

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.88  E-value=5.3e-23  Score=169.72  Aligned_cols=147  Identities=17%  Similarity=0.189  Sum_probs=119.8

Q ss_pred             CCccccceEEEccccCChhhHHHHHhhCCCCeEEcCCCCCcceeeeeccCCcccc--------------cccccCccccc
Q 030653           26 NSLAFHSQIRTKSQMAEVRHHRPIPHTLPTRRLLLPSVLSSSSTCHSLLPSVVSS--------------SLLIRTLSMWV   91 (174)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~p~~~i~~~yg~te~~~~~~~~~~~~~~--------------~~~~~~~~~~~   91 (174)
                      .....++.+..+|+.++++....+.+.++. .+.+.||.+|+.............              .....+..++.
T Consensus       269 ~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (503)
T d3cw9a1         269 LKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVAN  347 (503)
T ss_dssp             CCCTTCCEEEECSSCCCHHHHHHHHHHCCS-EEEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCT
T ss_pred             ccccceEEEEeccccccccccccccccccc-cccccccccccceeeeeccccccccccccccccceeeeeecccCcccCC
Confidence            344678999999999999999999988864 688899999987544332222211              11223345556


Q ss_pred             CCcCeEEe---CcccccccCCcccccccccCCCeEecCCeeee--CCeEEEEeccCCeEEECcEEeChHHHHHHHhcCCC
Q 030653           92 AVLGSKFV---KLISAGYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPE  166 (174)
Q Consensus        92 ~~~Gel~v---~~v~~gY~~~~~~t~~~~~~~g~~~TGD~g~~--dG~l~~~GR~~d~i~~~G~~v~p~eVE~~l~~~~~  166 (174)
                      ++.|++.+   +....+|+++++.+.+.| .+|||+|||+|++  ||+|+++||+||+||++|++|+|.+||++|.+||+
T Consensus       348 g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~  426 (503)
T d3cw9a1         348 GEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG  426 (503)
T ss_dssp             TCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTT
T ss_pred             CccccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCC
Confidence            77887766   788889999999998888 6899999999999  99999999999999999999999999999999999


Q ss_pred             cceEEEeC
Q 030653          167 MVDAAVIP  174 (174)
Q Consensus       167 V~~~~Vvg  174 (174)
                      |.+|+|+|
T Consensus       427 V~~~~v~~  434 (503)
T d3cw9a1         427 VTEVVVIG  434 (503)
T ss_dssp             EEEEEEEE
T ss_pred             ccEEEEEE
Confidence            99999985