Citrus Sinensis ID: 030655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MNRRIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAADHSSNGFQFQDQFVSLGHEIGRKGILRADS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccEEEEEEccccEEEEEEcccccEEEccEEEEEEEEEEEEEcccEEccccEEEEEEEEEEEEEEEEEccccccEEEEEEccEEccccccccccccccccccccccccEEEHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccEEEEEcccccEEEEEEcccEEEEEccEEEEccEEEEEEEcccEccEcEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEccccHHHcccccccccccccccHHHHHHHHHHHHHEEcccccEEccc
Coil and Loop (DISEMBL)
MNRRIILWAILLVGLCRIEAKAQASSSIYDHLkahglpigilpkgiteysvdptsgffqinltepcdakfenqfhydfnisgylsmgkigelsgvsqqelflwfpvrcirvddpssgliyfdvgvvdkqfslslfedprdctaadhssngfqfQDQFVSLGHEigrkgilrads
Flexible Loop (DISEMBL)
MNRRIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAADHSSNGFQFQDQFVSLGHEIgrkgilrads
Low Complexity Region (SEG)
MNRRIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAADHSSNGFQFQDQFVSLGHEIGRKGILRADS
Disordered region (IsUnstruct)
***RIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAAD***NGFQFQDQFVSLGHEIG*********
Disordered Region (DISOPRED)
**RRIILWAILLVGLC*************DHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDC***********FQ********************
Disordered Region (DISEMBL)
MNRRIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAADHSSNGFQFQDQFVSLGHEIGRKGILRADS
Disordered Region (DISPRO)
*NRRIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAADHSSNGFQFQDQFVSLGHEIGRK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNRRIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAADHSSNGFQFQDQFVSLGHEIGRKGILRADS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9M015	170	Uncharacterized protein A	no	no	0.695	0.711	0.234	4e-05

>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 7/128 (5%)

Query: 21  KAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQ--FHYDF 78
           K +    + + LK + LPIGI P   T Y  D  +    + +   C+  +++     +  
Sbjct: 47  KGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTT 106

Query: 79  NISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDP 138
            ++G+L  GK+ ++ G+ + ++ +W  V  I  D   +  +YF  G + K  S   +E  
Sbjct: 107 TVTGHLEKGKLTDVEGI-KTKVMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYEVQ 161

Query: 139 RDCTAADH 146
           R+    D 
Sbjct: 162 RNGLRVDK 169

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
255547534	184	conserved hypothetical protein [Ricinus	0.913	0.864	0.634	2e-51
449442285	209	PREDICTED: uncharacterized protein LOC10	0.839	0.698	0.595	1e-44
356531880	163	PREDICTED: uncharacterized protein LOC10	0.879	0.938	0.562	4e-44
356568511	164	PREDICTED: uncharacterized protein LOC10	0.787	0.835	0.598	1e-43
224069670	181	predicted protein [Populus trichocarpa]	0.810	0.779	0.597	5e-42
357507815	170	hypothetical protein MTR_7g080280 [Medic	0.706	0.723	0.658	2e-41
224129380	165	predicted protein [Populus trichocarpa]	0.810	0.854	0.590	3e-41
225430914	192	PREDICTED: uncharacterized protein LOC10	0.965	0.875	0.522	6e-41
147860225	192	hypothetical protein VITISV_040145 [Viti	0.925	0.838	0.517	7e-41
255572654	186	conserved hypothetical protein [Ricinus	0.706	0.661	0.645	1e-40

>gi|255547534|ref|XP_002514824.1| conserved hypothetical protein [Ricinus communis] gi|223545875|gb|EEF47378.1| conserved hypothetical protein [Ricinus communis]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/164 (63%), Positives = 127/164 (77%), Gaps = 5/164 (3%)

Query: 15  LCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQF 74
           L  +    Q++ SIYDHL+ + LP+G+ PKGIT++S D T+G FQINL +PC+AKFENQ 
Sbjct: 22  LIILPFSTQSTPSIYDHLRQNSLPVGLFPKGITDFSYDTTNGHFQINLIQPCNAKFENQL 81

Query: 75  HYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSL 134
           HYDFNISG+LS GKIGELSG+SQQELFLWFPV+ IRVD PSSGLIYFDVGVVDKQFSLSL
Sbjct: 82  HYDFNISGFLSFGKIGELSGISQQELFLWFPVKGIRVDVPSSGLIYFDVGVVDKQFSLSL 141

Query: 135 FEDPRDCTAADHSSNGFQFQD----QFVSLGHEIGRKGILRADS 174
           FE+P +CTA D S +  +F+     Q   L ++I + G LRA S
Sbjct: 142 FENPIECTAVDGSVDPLRFEKDLKVQSGKLEYKIAQ-GELRAAS 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442285|ref|XP_004138912.1| PREDICTED: uncharacterized protein LOC101222871 [Cucumis sativus] gi|449495922|ref|XP_004159986.1| PREDICTED: uncharacterized LOC101222871 [Cucumis sativus]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 109/146 (74%)

Query: 22  AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNIS 81
           A   S+IYDHL  +GLPIG+LPK IT++S+D ++G FQ+ L +PC+AKFEN+ HYDFN+S
Sbjct: 46  ASDPSTIYDHLHLYGLPIGLLPKNITKFSIDSSTGRFQVFLDQPCNAKFENEVHYDFNVS 105

Query: 82  GYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDC 141
           G LS G+I EL+G+S QELFLWFPV+ IRVD  +SGLI+FDVGVVDKQFSLSLFE P DC
Sbjct: 106 GRLSYGQIAELAGISSQELFLWFPVKGIRVDLSTSGLIHFDVGVVDKQFSLSLFESPIDC 165

Query: 142 TAADHSSNGFQFQDQFVSLGHEIGRK 167
           TAAD       F    + +   +  K
Sbjct: 166 TAADPVDRSIAFNAASLDMDRPLSTK 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531880|ref|XP_003534504.1| PREDICTED: uncharacterized protein LOC100778787 [Glycine max]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 111/153 (72%)

Query: 6   ILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEP 65
           IL A++    C +      S++IY+ L+A GLP+G+LPKGI +YS++ TSG F++ + E 
Sbjct: 10  ILLALIAAAWCLLTPARANSTTIYEELRAQGLPVGLLPKGIAKYSMNATSGEFEVWMKEA 69

Query: 66  CDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGV 125
           C+AKFEN+ HYD NI G L  G+IGELSGVS QELFLWFPV+ IRVD P+SGLI+FDVGV
Sbjct: 70  CNAKFENEVHYDSNIKGVLGYGRIGELSGVSAQELFLWFPVKGIRVDVPTSGLIHFDVGV 129

Query: 126 VDKQFSLSLFEDPRDCTAADHSSNGFQFQDQFV 158
            DKQFSLSLFEDP DC      + G + + + V
Sbjct: 130 ADKQFSLSLFEDPPDCNPQAQVNVGGEGEQRAV 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568511|ref|XP_003552454.1| PREDICTED: uncharacterized protein LOC100793358 [Glycine max]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 106/137 (77%)

Query: 6   ILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEP 65
           IL  +++   C +      S++IY+ L+A GLP+G+LPKGI +YS++ +SG F++ + EP
Sbjct: 10  ILLPLIVAASCLLSPATANSTTIYEELRAQGLPVGLLPKGIAKYSLNASSGEFEVWMKEP 69

Query: 66  CDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGV 125
           C+AKFEN+ HYD NI G L  G+IG+LSGVS QELFLWFPV+ IRVD P+SGLI+FDVGV
Sbjct: 70  CNAKFENEVHYDSNIKGVLGYGRIGKLSGVSAQELFLWFPVKGIRVDVPTSGLIHFDVGV 129

Query: 126 VDKQFSLSLFEDPRDCT 142
            DKQFSLSLFEDP DC 
Sbjct: 130 ADKQFSLSLFEDPPDCN 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069670|ref|XP_002303019.1| predicted protein [Populus trichocarpa] gi|222844745|gb|EEE82292.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 109/144 (75%), Gaps = 3/144 (2%)

Query: 1   MNRRIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQI 60
           M R I   + L++ +  + +  +   SIYD LKAHGLPIG+LPKG+ E+ +D T G F++
Sbjct: 1   MLRLICYLSFLVISITTVYSDQE--KSIYDVLKAHGLPIGLLPKGVKEFKIDET-GRFEV 57

Query: 61  NLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIY 120
           +L + C+AKFE++ HYD N++G LS G+IG LSG+S QELFLWFPV+ IRVD PSSGLIY
Sbjct: 58  HLDQACNAKFESELHYDMNVTGSLSYGQIGALSGISSQELFLWFPVKGIRVDVPSSGLIY 117

Query: 121 FDVGVVDKQFSLSLFEDPRDCTAA 144
           FDVGVV KQFSLSLFE PRDC A 
Sbjct: 118 FDVGVVFKQFSLSLFEMPRDCVAV 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507815|ref|XP_003624196.1| hypothetical protein MTR_7g080280 [Medicago truncatula] gi|355499211|gb|AES80414.1| hypothetical protein MTR_7g080280 [Medicago truncatula] gi|388520575|gb|AFK48349.1| unknown [Medicago truncatula]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 97/123 (78%)

Query: 20  AKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFN 79
           A    S++IYD L+A GLP+G+LPKGIT Y ++ TSG FQ+ + EPC+A+FEN+ HYD N
Sbjct: 33  ANGSNSTTIYDELRAKGLPVGLLPKGITRYEINGTSGEFQVWMKEPCNARFENEVHYDPN 92

Query: 80  ISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPR 139
           I G L  GKI  LSG++ QELFLWFPV+ IRVD PSSGLI+FDVGV DKQFSLSLFEDP 
Sbjct: 93  IKGTLGYGKIKGLSGMTAQELFLWFPVKGIRVDLPSSGLIHFDVGVADKQFSLSLFEDPP 152

Query: 140 DCT 142
           DC 
Sbjct: 153 DCN 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129380|ref|XP_002320572.1| predicted protein [Populus trichocarpa] gi|222861345|gb|EEE98887.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 109/144 (75%), Gaps = 3/144 (2%)

Query: 1   MNRRIILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQI 60
           M R I   + LL+ +  +   +  + SIYD LKAHGLP+G+LP G+ E+++D T G F++
Sbjct: 4   MLRLICFLSFLLISVPTV--CSDKNQSIYDVLKAHGLPMGLLPTGVKEFNIDET-GRFEV 60

Query: 61  NLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIY 120
           +L + C+AKFE++ HYD N++G LS G+IG LSG+S QELFLWFPV+ IRVD PSSGLIY
Sbjct: 61  HLDQACNAKFESELHYDMNVTGSLSFGQIGALSGISAQELFLWFPVKGIRVDVPSSGLIY 120

Query: 121 FDVGVVDKQFSLSLFEDPRDCTAA 144
           FDVGVV KQFSLSLFE PRDC A 
Sbjct: 121 FDVGVVFKQFSLSLFEMPRDCVAV 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430914|ref|XP_002276904.1| PREDICTED: uncharacterized protein LOC100244442 [Vitis vinifera] gi|297735246|emb|CBI17608.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 119/180 (66%), Gaps = 12/180 (6%)

Query: 7   LWAILLVGLCRIEAKAQASS-SIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEP 65
           L+ + L  L  I + A ASS S++D L+ +GLPIG+LP  +  +S+D TSG F++ L   
Sbjct: 13  LYFLALSFLLSICSFAAASSVSVHDALRHNGLPIGLLPTNVLNFSLDATSGRFELLLRCA 72

Query: 66  CDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGV 125
           C+AKFENQ HYD+N++G LS G+IG +SGVS QELFLWFPV+ IRVD PSSGLIYFDVGV
Sbjct: 73  CNAKFENQLHYDYNVTGTLSYGQIGGMSGVSAQELFLWFPVKGIRVDIPSSGLIYFDVGV 132

Query: 126 VDKQFSLSLFEDPRDCTAADHSSNGFQFQDQFV-----------SLGHEIGRKGILRADS 174
           + KQFSLSLFE P DCT    S     F+D  +            LG+E  +   LRA S
Sbjct: 133 IYKQFSLSLFESPPDCTEVTDSPPQLVFRDGRIVNSELSQSRPGKLGYEAKQGNALRAVS 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860225|emb|CAN80852.1| hypothetical protein VITISV_040145 [Vitis vinifera]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 115/174 (66%), Gaps = 13/174 (7%)

Query: 12  LVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFE 71
           L+ +C   A +  S S++D L+ +GLPIG+LP  +  +S+D TSG F++ L   C+AKFE
Sbjct: 21  LLSICSFAAAS--SVSVHDALRHNGLPIGLLPTNVLNFSLDATSGRFELLLRCACNAKFE 78

Query: 72  NQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFS 131
           NQ HYD+N++G LS G+IG +SGVS QELFLWFPV+ IRVD PSSGLIYFDVGV+ KQFS
Sbjct: 79  NQLHYDYNVTGTLSYGQIGGMSGVSAQELFLWFPVKGIRVDIPSSGLIYFDVGVIYKQFS 138

Query: 132 LSLFEDPRDCTAADHSSNGFQFQDQFV-----------SLGHEIGRKGILRADS 174
           LSLFE P DCT    S     F+D  +            LG+E  +   LRA S
Sbjct: 139 LSLFESPPDCTEVTDSPPQLVFRDGRIVNSELSQSRPGXLGYEAKQGNALRAVS 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572654|ref|XP_002527260.1| conserved hypothetical protein [Ricinus communis] gi|223533353|gb|EEF35104.1| conserved hypothetical protein [Ricinus communis]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 99/124 (79%), Gaps = 1/124 (0%)

Query: 21  KAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNI 80
           + Q   S YD LK HGLP+G+LPKG+ ++ ++ T G F+++L + C+AKFE++ HYD N+
Sbjct: 24  RQQHEISFYDVLKDHGLPMGLLPKGVKDFKINET-GAFEVHLDQACNAKFESELHYDMNV 82

Query: 81  SGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRD 140
           SG LS G+IG LSG+S QELFLWFPV+ IRVD PSSGLIYFDVGVV KQFSLSLFE PRD
Sbjct: 83  SGTLSYGQIGALSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVSKQFSLSLFETPRD 142

Query: 141 CTAA 144
           CTA 
Sbjct: 143 CTAV 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2171297	195	AT5G16380 "AT5G16380" [Arabido	0.683	0.610	0.663	8.7e-40
TAIR|locus:2079601	169	AT3G07470 [Arabidopsis thalian	0.770	0.792	0.548	5.7e-36
TAIR|locus:2079701	271	AT3G07460 "AT3G07460" [Arabido	0.787	0.505	0.5	9.8e-32
TAIR|locus:505006197	156	AT1G61667 "AT1G61667" [Arabido	0.764	0.852	0.467	1.5e-26
TAIR|locus:2172094	161	AT5G54530 "AT5G54530" [Arabido	0.798	0.863	0.419	1.2e-24
TAIR|locus:2147610	181	AT5G19860 "AT5G19860" [Arabido	0.701	0.674	0.349	2.8e-18
TAIR|locus:505006187	175	AT1G55265 [Arabidopsis thalian	0.706	0.702	0.341	1.6e-17
TAIR|locus:2133254	154	AT4G02360 "AT4G02360" [Arabido	0.701	0.792	0.325	9.8e-16
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.626	0.656	0.336	1.3e-13
TAIR|locus:2133264	167	AT4G02370 "AT4G02370" [Arabido	0.689	0.718	0.322	1.3e-13

TAIR|locus:2171297 AT5G16380 "AT5G16380" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 79/119 (66%), Positives = 95/119 (79%)

Query:    27 SIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSM 86
             S YD+L+   LP GI+PKG+T +S+D  +G F + L  PCDAKFENQFH+D+NISG LS 
Sbjct:    30 SFYDYLRESNLPAGIVPKGVTNFSIDIKTGRFTVALPVPCDAKFENQFHFDYNISGVLSD 89

Query:    87 GKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAAD 145
             G+IG LSGV+Q+ELFLWF V+ I VD  SSGLI+FDVGV DKQ SLSLFE PRDCTAA+
Sbjct:    90 GRIGNLSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGVADKQLSLSLFESPRDCTAAE 148

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2079601 AT3G07470 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 74/135 (54%), Positives = 97/135 (71%)

Query:     7 LWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPC 66
             L  +L+ G+  I      + +IY+ L A+GLP GI PKG+ E++ D  +G F + L + C
Sbjct:    11 LCLVLVAGIS-ISTAISETETIYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQAC 69

Query:    67 DAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVV 126
             +AK+E + HYD NI+G +   +I +LSG+S QELFLWFPV+ IRVD PSSGLIYFDVGVV
Sbjct:    70 EAKYETEIHYDANITGTIGSAQISDLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVV 129

Query:   127 DKQFSLSLFEDPRDC 141
              KQ+SLSLFE PRDC
Sbjct:   130 RKQYSLSLFETPRDC 144

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2079701 AT3G07460 "AT3G07460" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/138 (50%), Positives = 95/138 (68%)

Query:     6 ILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEP 65
             +L  +L  G+  I A    + SI + L A+GLP+G+ PKG+  ++V+  +G F + L + 
Sbjct:     9 LLCFVLAAGIS-ISAVIAENESIDEILLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQS 67

Query:    66 CDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGV 125
             C AK+E + HYD  +SG +   +I +LSG+S QELFLW  V+ IRVD PSSGLI+FDVGV
Sbjct:    68 CQAKYETELHYDEIVSGTIGYAQIRDLSGISAQELFLWLQVKGIRVDVPSSGLIFFDVGV 127

Query:   126 VDKQFSLSLFEDPRDCTA 143
             + KQ+SLSLFE PRDC A
Sbjct:   128 LRKQYSLSLFETPRDCVA 145

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:505006197 AT1G61667 "AT1G61667" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 64/137 (46%), Positives = 88/137 (64%)

Query:     5 IILWAILLVGLCRIEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTE 64
             ++L  +LLV    I   +Q  SSI + L+A GLP G+ P  +  YS+D  +G  ++ L  
Sbjct:     3 MLLLLLLLVPF--ITPSSQ--SSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQN 58

Query:    65 PCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVG 124
             PC A+FEN+ ++D  I   LS G +  L G++Q+ELFLW PV+ I V+DPSSGL+ FD+G
Sbjct:    59 PCFARFENRVYFDRVIKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIG 118

Query:   125 VVDKQFSLSLFEDPRDC 141
             V  KQ S SLFEDP  C
Sbjct:   119 VAHKQISRSLFEDPPVC 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2172094 AT5G54530 "AT5G54530" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 60/143 (41%), Positives = 89/143 (62%)

Query:     1 MNRRIILWAILLVGLCRIEAKAQASS--SIYDHLKAHGLPIGILPKGITEYSVDPTSGFF 58
             MN+ +I   ILL+   R+     + S  +++D L++ GLP G+LP+ +  Y +    G  
Sbjct:     1 MNK-LISRMILLLTTLRLSLSLSSPSYPTVHDVLRSEGLPAGLLPQEVDSYILH-NDGRL 58

Query:    59 QINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGL 118
             ++ L  PC AKFE   H++  + G LS G +  + G+SQ+ELFLW  V+ I V++P+SG+
Sbjct:    59 EVFLAAPCYAKFETNVHFEAVVRGNLSYGSLVGVEGLSQKELFLWLQVKDIVVENPNSGV 118

Query:   119 IYFDVGVVDKQFSLSLFEDPRDC 141
             I FD+GV  KQ SLSLFEDP  C
Sbjct:   119 IVFDIGVAFKQLSLSLFEDPPKC 141

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2147610 AT5G19860 "AT5G19860" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 43/123 (34%), Positives = 70/123 (56%)

Query:    19 EAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDF 78
             E    + S++Y+ L  +GLP G+LP  +T++++    G F ++L   C+ +F+   HYD 
Sbjct:    27 EPDPDSISTVYELLPKYGLPSGLLPDTVTDFTLSD-DGRFVVHLPNSCEIEFDYLVHYDK 85

Query:    79 NISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDP 138
              ISG +  G I EL G+  ++ F+W  V  I+VD P S  IYF VG ++K+  +  F+  
Sbjct:    86 TISGRIGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTI 145

Query:   139 RDC 141
               C
Sbjct:   146 HSC 148

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:505006187 AT1G55265 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 43/126 (34%), Positives = 68/126 (53%)

Query:    18 IEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQF-HY 76
             ++  + A+  I+D L  +G P G+LP  +  Y++    G F ++L   C  KF +Q   Y
Sbjct:    44 LDRPSLAADDIHDLLPRYGFPKGLLPNNVKSYTISD-DGDFTVDLISSCYVKFSDQLVFY 102

Query:    77 DFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFE 136
               NI+G LS G + ++ G+  +E FLW P+  +   DPSS  + F VG V K    S+FE
Sbjct:   103 GKNIAGKLSYGSVKDVRGIQAKEAFLWLPITAME-SDPSSATVVFSVGFVSKTLPASMFE 161

Query:   137 DPRDCT 142
             +   C+
Sbjct:   162 NVPSCS 167

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2133254 AT4G02360 "AT4G02360" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/126 (32%), Positives = 65/126 (51%)

Query:    29 YDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFEN-QFHYDFNISGYLSMG 87
             YD +K + LP GILPKG+ +Y ++P +G F++   + C+   ++ Q  Y   ISG +S G
Sbjct:    30 YDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTIQSYQLKYKSTISGVISPG 89

Query:    88 KIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAADHS 147
              +  L GVS + LF W  +  + +D      + F VG+    F  + FE+   C      
Sbjct:    90 HVKNLKGVSVKVLFFWVNIAEVSLDGAD---LDFSVGIASASFPAANFEESPQCGCGFDC 146

Query:   148 SNGFQF 153
             +NG  F
Sbjct:   147 NNGLLF 152

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/116 (33%), Positives = 59/116 (50%)

Query:    29 YDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFN--ISGYLSM 86
             Y  L+++  P+GILPKG+  Y +D ++G F     + C    +  +  D+   ISGY+S 
Sbjct:    33 YTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLDYKSTISGYISE 92

Query:    87 GKIGELSGVSQQELFLWFP-VRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDC 141
              KI +L+GV  + LFLW   V  IR  D     + F VG+    F +  F +   C
Sbjct:    93 NKITKLTGVKVKVLFLWLNIVEVIRNGDE----LEFSVGITSANFEIDEFYESPQC 144

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2133264 AT4G02370 "AT4G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 41/127 (32%), Positives = 62/127 (48%)

Query:    18 IEAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFEN--QFH 75
             + A    + + Y  L+++  P+GILPKG+  Y +D T+G F     + C        Q +
Sbjct:    22 VTAAESDTPTAYSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDSCSFNLVGSYQLN 81

Query:    76 YDFNISGYLSMGKIGELSGVSQQELFLWFP-VRCIRVDDPSSGLIYFDVGVVDKQFSLSL 134
             Y   ISGY+S  K+ +L+GV  + LFLW   V  IR  D       F VG+    F++  
Sbjct:    82 YKSTISGYISENKLKKLTGVKVKVLFLWLNIVEVIRNGDEME----FSVGITSANFAIQE 137

Query:   135 FEDPRDC 141
             F +   C
Sbjct:   138 FLESPQC 144

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002441 hypothetical protein (181 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	4e-41

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score =  133 bits (337), Expect = 4e-41
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 27  SIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFEN-QFHYDFNISGYLS 85
           + Y+ L+ +GLP+G+LPKG+TEY++D T+G F + L   C+  FE     YD  ++GY+S
Sbjct: 1   TAYELLEEYGLPVGLLPKGVTEYTLDETTGKFWVYLNGTCEFTFEGYSVRYDPTVTGYIS 60

Query: 86  MGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLF 135
            G++  L GV  + LFLW P+  I VDD     + F VGV+ K F    F
Sbjct: 61  KGRLSGLEGVKVKVLFLWVPIVEISVDD--GDKLTFSVGVLSKSFPADAF 108

This family consists of several plant proteins of unknown function. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	100.0

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=6.7e-46  Score=283.23  Aligned_cols=109  Identities=47%  Similarity=0.924  Sum_probs=83.3

Q ss_pred             cHHHHHHhcCCCCCCCCCCceeEEEeCCCcEEEEEecCceeEEece-eEEEccEEEEEEeccccccccceeEEEEEeeee
Q 030655           27 SIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFEN-QFHYDFNISGYLSMGKIGELSGVSQQELFLWFP  105 (174)
Q Consensus        27 ta~elL~~~gLP~GLLP~~V~~y~l~~~tG~f~V~L~~~C~~~f~~-~v~Y~~~ItG~i~~G~I~~L~GVkvK~lflWv~  105 (174)
                      ||||+|++||||+||||++|++|+||++||+|||+|+++|+|+|+. +|+|+++|||+|++|+|++|+|||+|++|+|++
T Consensus         1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~~   80 (110)
T PF04398_consen    1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEFRFEGYLVSYDSEITGYIEKGKIKNLTGVKVKELFLWVP   80 (110)
T ss_dssp             --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEEESTTSEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEES
T ss_pred             CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEEEEEEEEEEEcCeEEEEECCCcCccccCEEEEEEEEEee
Confidence            7999999999999999999999999999999999999999999984 999999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCCeEEEEEceeeeeeccccccCC
Q 030655          106 VRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDP  138 (174)
Q Consensus       106 I~eI~vd~p~~~~I~F~vG~~sksFP~s~F~~~  138 (174)
                      |++|.++   +++|+|++|.++++||+++|++|
T Consensus        81 v~~i~~~---~~~i~F~~g~~s~sfp~~~F~~s  110 (110)
T PF04398_consen   81 VTEISVD---GDKIYFKVGGISKSFPVSAFEES  110 (110)
T ss_dssp             ---BEE----SSSEE-TTSSSS----TTTTSS-
T ss_pred             EEEEEEc---CCEEEEEEeeEeccCCHHHhccC
Confidence            9999995   89999999999999999999986

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1ydu_A	170	Solution Nmr Structure Of At5g01610, An Arabidopsis		8e-06

>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis Thaliana Protein Containing Duf538 Domain Length = 170

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 21  KAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQ--FHYDF 78
           K +    + + LK + LPIGI P   T Y  D  +    + +   C+  +++     +  
Sbjct: 47  KGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTT 106
Query: 79  NISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGV 125
            ++G+L  GK+ ++ G+ + ++ +W  V  I  D   +  +YF  G+
Sbjct: 107 TVTGHLEKGKLTDVEGI-KTKVMIWVKVTSISTD---ASKVYFTAGM 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	2e-41

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score =  136 bits (343), Expect = 2e-41
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 19  EAKAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFEN--QFHY 76
           + K +    + + LK + LPIGI P   T Y  D  +    + +   C+  +++     +
Sbjct: 45  KIKGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKF 104

Query: 77  DFNISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFE 136
              ++G+L  GK+ ++ G+  + + +W  V  I  D      +YF  G+  K  S   + 
Sbjct: 105 TTTVTGHLEKGKLTDVEGIKTK-VMIWVKVTSISTDASK---VYFTAGMK-KSRSRDAYG 159

Query: 137 DPRDCTAAD 145
             R+    D
Sbjct: 160 VQRNGLRVD 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	100.0

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=100.00  E-value=2.8e-44  Score=291.24  Aligned_cols=120  Identities=24%  Similarity=0.523  Sum_probs=113.7

Q ss_pred             hccCCccHHHHHHhcCCCCCCCCCCceeEEEeCCCcEEEEEecCceeEEec--eeEEEccEEEEEEeccccccccceeEE
Q 030655           21 KAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFE--NQFHYDFNISGYLSMGKIGELSGVSQQ   98 (174)
Q Consensus        21 ~~~~~~ta~elL~~~gLP~GLLP~~V~~y~l~~~tG~f~V~L~~~C~~~f~--~~v~Y~~~ItG~i~~G~I~~L~GVkvK   98 (174)
                      ...+++++||+|++||||+||||++|++|+||++||+|||+|+++|+|+|+  ++|+|+++|||+|++|+|++|+|||+|
T Consensus        47 kg~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K  126 (170)
T 1ydu_A           47 KGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK  126 (170)
T ss_dssp             TTTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE
T ss_pred             cccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEE
Confidence            346788999999999999999999999999999999999999999999997  699999999999999999999999999


Q ss_pred             EEEeeeeeeEEEEcCCCCCeEEEEEceeeeeeccccccCCCCCCcCc
Q 030655           99 ELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTAAD  145 (174)
Q Consensus        99 ~lflWv~I~eI~vd~p~~~~I~F~vG~~sksFP~s~F~~~p~C~~~~  145 (174)
                      +| +|++|++|.|+   +++|+|++|+ +++||+++|+.+|+|....
T Consensus       127 ~L-lWv~V~eI~v~---~~kI~F~vGi-~ksfp~saFe~~~~c~~~~  168 (170)
T 1ydu_A          127 VM-IWVKVTSISTD---ASKVYFTAGM-KKSRSRDAYGVQRNGLRVD  168 (170)
T ss_dssp             SS-SEESCCCBEEC---SSSEECTTSS-SSCCCHHHHSSCCCCCCTT
T ss_pred             EE-EEeeEEEEEEe---CCEEEEEEcC-cccccHHHhcCCcCCcccC
Confidence            99 99999999995   8999999996 7999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	2e-42

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  137 bits (347), Expect = 2e-42
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 21  KAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFEN--QFHYDF 78
           K +    + + LK + LPIGI P   T Y  D  +    + +   C+  +++     +  
Sbjct: 46  KGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTT 105

Query: 79  NISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDP 138
            ++G+L  GK+ ++ G+ + ++ +W  V  I  D      +YF  G+  K  S   +   
Sbjct: 106 TVTGHLEKGKLTDVEGI-KTKVMIWVKVTSISTDASK---VYFTAGMK-KSRSRDAYGVQ 160

Query: 139 RDCTAAD 145
           R+    D
Sbjct: 161 RNGLRVD 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	100.0

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-43  Score=284.08  Aligned_cols=117  Identities=23%  Similarity=0.521  Sum_probs=109.4

Q ss_pred             ccCCccHHHHHHhcCCCCCCCCCCceeEEEeCCCcEEEEEecCceeEEec--eeEEEccEEEEEEeccccccccceeEEE
Q 030655           22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFE--NQFHYDFNISGYLSMGKIGELSGVSQQE   99 (174)
Q Consensus        22 ~~~~~ta~elL~~~gLP~GLLP~~V~~y~l~~~tG~f~V~L~~~C~~~f~--~~v~Y~~~ItG~i~~G~I~~L~GVkvK~   99 (174)
                      --++++++|||++||||+||||++|++|+||++||+|||+|+++|+|+|+  ++|+|+++|||+|++|+|++|+|||+| 
T Consensus        47 gk~~k~l~ELL~eygLP~GLLP~~V~~Y~l~~~TG~f~V~l~~~C~~~f~~sy~v~Y~~~VtG~ls~Gki~~L~GVkvK-  125 (169)
T d1ydua1          47 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-  125 (169)
T ss_dssp             TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE-
T ss_pred             CCCCCCHHHHHHhcCCCCccCCCCceEEEEECCCcEEEEEeCCCEEEEecCceEEEEcCEEEEEEcCCcCccccceEEE-
Confidence            34678999999999999999999999999999999999999999999997  799999999999999999999999999 


Q ss_pred             EEeeeeeeEEEEcCCCCCeEEEEEceeeeeeccccccCCCCCCc
Q 030655          100 LFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDPRDCTA  143 (174)
Q Consensus       100 lflWv~I~eI~vd~p~~~~I~F~vG~~sksFP~s~F~~~p~C~~  143 (174)
                      +|+|++|++|.+|   +++|+|++| ++|+||+++||.+++|..
T Consensus       126 lflWv~V~eI~vd---~~kI~F~vG-I~KsfP~daFE~prdg~~  165 (169)
T d1ydua1         126 VMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYGVQRNGLR  165 (169)
T ss_dssp             SSSEESCCCBEEC---SSSEECTTS-SSSCCCHHHHSSCCCCCC
T ss_pred             EEEEEEEEEEEEc---CCeEEEEec-ccccCCHHHccCCcccee
Confidence            7899999999998   789999999 589999999988776654