Citrus Sinensis ID: 030660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MDQELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Secondary Structure (PSIPRED)
cccHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccHHHHccccccccHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccccEEEEEEEcccEEEc
Coil and Loop (DISEMBL)
mdqelpttmdHELLNVLRRRDSLlrknnwkgetplhiaarvgdpAIVSTILKYapaitngtesepesllritddegntplhnavrNKHENVVRMLVKkdriplgylnnaeqtplsiaidsslTDIACFIidqrpeslnhrlpeELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Flexible Loop (DISEMBL)
mdqelpttmdhellNVLRRRDSLlrknnwkgetplhiaarvgdPAIVSTILKYAPAitngtesepeSLLRITDdegntplhnavrnkhenvVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Low Complexity Region (SEG)
MDQELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Disordered region (IsUnstruct)
************LLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT***************************NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS**
Disordered Region (DISOPRED)
MDQELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Disordered Region (DISEMBL)
********MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Disordered Region (DISPRO)
**QELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q96NW4	1050	Ankyrin repeat domain-con	yes	no	0.526	0.086	0.302	1e-06
Q5REW9	1050	Ankyrin repeat domain-con	yes	no	0.526	0.086	0.302	2e-06
Q5ZLC8	1073	Serine/threonine-protein	yes	no	0.780	0.125	0.267	2e-06
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.751	0.110	0.305	3e-06
P97819	807	85/88 kDa calcium-indepen	no	no	0.456	0.097	0.333	4e-06
P97570	807	85/88 kDa calcium-indepen	yes	no	0.456	0.097	0.333	4e-06
Q6P6B7	361	Ankyrin repeat domain-con	no	no	0.583	0.279	0.303	7e-06
Q14DN9	465	Ankyrin repeat and death	no	no	0.589	0.219	0.354	1e-05
Q9P2R3	1169	Ankyrin repeat and FYVE d	no	no	0.791	0.117	0.272	1e-05
Q54KA7	986	Ankyrin repeat, PH and SE	yes	no	0.508	0.089	0.316	1e-05

>sp|Q96NW4|ANR27_HUMAN Ankyrin repeat domain-containing protein 27 OS=Homo sapiens GN=ANKRD27 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 18/109 (16%)

Query: 13  LLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT 72
           L+++L  + +++   ++ G TPLH+A + G  ++   +L Y  +              + 
Sbjct: 478 LIDLLVSKGAMVNATDYHGATPLHLACQKGYQSVTLLLLHYKASA------------EVQ 525

Query: 73  DDEGNTPLHNAVRNKHENVVRMLVKKD----RIPLGYLNNAEQTPLSIA 117
           D+ GNTPLH A    HE+ V+ LV  D    R+ +G  N    TPL IA
Sbjct: 526 DNNGNTPLHLACTYGHEDCVKALVYYDVESCRLDIG--NEKGDTPLHIA 572

May be a Rab21 guanine exchange factor and regulate endosome dynamics.
Homo sapiens (taxid: 9606)

>sp|Q5REW9|ANR27_PONAB Ankyrin repeat domain-containing protein 27 OS=Pongo abelii GN=ANKRD27 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 18/109 (16%)

Query: 13  LLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT 72
           L+++L  + +++   ++ G TPLH+A + G  ++   +L Y  +              + 
Sbjct: 478 LIDLLVSKGAVVNATDYHGATPLHLACQKGYQSVTLLLLHYKASA------------EVQ 525

Query: 73  DDEGNTPLHNAVRNKHENVVRMLVKKD----RIPLGYLNNAEQTPLSIA 117
           D+ GNTPLH A    HE+ V+ LV  D    R+ +G  N    TPL IA
Sbjct: 526 DNNGNTPLHLACTYGHEDCVKALVYYDVESCRLDIG--NEKGDTPLHIA 572

May be a Rab21 guanine exchange factor and regulate endosome dynamics.

Pongo abelii (taxid: 9601)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 11/146 (7%)

Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           + L  L   D+ +   ++KG TP+H A+  G   I+ T+L+ A        ++P  L  +
Sbjct: 734 DCLAALLDHDAFVLCRDFKGRTPIHFASACGHLEILRTLLQAA------LSTDP--LDSV 785

Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
            D  G +P+H A  + HE+ + +L++ +  P  YL     TPL  A+ ++    A  +++
Sbjct: 786 VDYSGYSPMHWASYSGHEDCLELLLEHN--PFAYLEGNPFTPLHCAVINNQDSTAEMLVE 843

Query: 132 Q-RPESLNHRLPEELTLLHSAVMRQN 156
               + +N R  +  T LH+A    N
Sbjct: 844 ALGAKIVNSRDAKGRTPLHAAAFADN 869

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 13   LLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT 72
            L+N L +  + +      GET LH AA  G+  +VS +      I NGT+   ++     
Sbjct: 946  LVNWLIKNKADIHAKTNSGETILHFAAESGNLNLVSLL------IHNGTDINTKT----- 994

Query: 73   DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             D+G T LH AV + + N+V +L+ K  I +    N+ +T L  A+D    D+   ++  
Sbjct: 995  -DDGLTALHYAVESGNLNLVSLLIHKG-IDVNAKTNSGETILHFAVDLGSLDLVSLLM-V 1051

Query: 133  RPESLNHRLPEELTLLHSAVMRQN 156
            R   +N +  + LT LH AV   N
Sbjct: 1052 RGADVNAKTDDGLTALHYAVESDN 1075

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|P97819|PLPL9_MOUSE 85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus GN=Pla2g6 PE=1 SV=3

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           N +G TPLH+A R GD  I+  +++Y  A            + +TD++G T  H AV+  
Sbjct: 149 NEEGCTPLHLACRKGDSEILVELVQYCHA-----------QMDVTDNKGETAFHYAVQGD 197

Query: 88  HENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
           +  V+++L K     L  +NN   TPL +A
Sbjct: 198 NPQVLQLLGKNASAGLNQVNNQGLTPLHLA 227

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|P97570|PLPL9_RAT 85/88 kDa calcium-independent phospholipase A2 OS=Rattus norvegicus GN=Pla2g6 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           N +G TPLH+A R GD  I+  +++Y  A            + +TD++G T  H AV+  
Sbjct: 149 NEEGCTPLHLACRKGDSEILVELVQYCHA-----------QMDVTDNKGETAFHYAVQGD 197

Query: 88  HENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
           +  V+++L K     L  +NN   TPL +A
Sbjct: 198 NPQVLQLLGKNASAGLNQVNNQGLTPLHLA 227

Catalyzes the release of fatty acids from phospholipids. It has been implicated in normal phospholipid remodeling, nitric oxide-induced or vasopressin-induced arachidonic acid release and in leukotriene and prostaglandin production. May participate in fas mediated apoptosis and in regulating transmembrane ion flux in glucose-stimulated B-cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q6P6B7|ANR16_HUMAN Ankyrin repeat domain-containing protein 16 OS=Homo sapiens GN=ANKRD16 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 27  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
            N  G    HIA+R GDP I+  +L   P        + ES +R       TPLH A  +
Sbjct: 133 KNKDGWNSFHIASREGDPLILQYLLTVCPGAW-----KTESKIR------RTPLHTAAMH 181

Query: 87  KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
            H   V++L+K+ +    Y +N   T L  AI     D+A  ++D+    L+
Sbjct: 182 GHLEAVKVLLKRCQYEPDYRDNCGVTALMDAIQCGHIDVARLLLDEHGACLS 233

Homo sapiens (taxid: 9606)

>sp|Q14DN9|AKD1B_MOUSE Ankyrin repeat and death domain-containing protein 1B OS=Mus musculus GN=Ankdd1b PE=2 SV=2

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 22/124 (17%)

Query: 32  ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV 91
           +TPLH+AA +G+  +V T+LK   A  N         L+ITD +G T L  A R++H  V
Sbjct: 272 QTPLHVAADLGNVELVETLLK---AGCN---------LKITDKQGKTALAVAARSQHSLV 319

Query: 92  VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA 151
           V ML+K +R    Y    E+   SI  DS+++    F  D   E+   R     TLL + 
Sbjct: 320 VDMLIKAER----YYAWREEHRESIQ-DSAVSSTLTFKQDHSLETRQIR-----TLLWNL 369

Query: 152 VMRQ 155
             RQ
Sbjct: 370 AYRQ 373

Mus musculus (taxid: 10090)

>sp|Q9P2R3|ANFY1_HUMAN Ankyrin repeat and FYVE domain-containing protein 1 OS=Homo sapiens GN=ANKFY1 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTE------SEPESLLRITDD-EGNT 78
           +N W GETPLH A R G   + + +L+        TE       E  SL  + D     T
Sbjct: 487 RNKW-GETPLHTACRHGLANLTAELLQQGANPNLQTEEALPLPKEAASLTSLADSVHLQT 545

Query: 79  PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE------------QTPLSIAIDSSLTDIA 126
           PLH A+   H +VV +++++    L   NN +            QT L +A+ + +  IA
Sbjct: 546 PLHMAIAYNHPDVVSVILEQKANALHATNNLQIIPDFSLKDSRDQTVLGLALWTGMHTIA 605

Query: 127 CFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI 164
             ++     ++N  + +  TLLH A+ RQ+    +  +
Sbjct: 606 AQLLGSGA-AINDTMSDGQTLLHMAIQRQDSKSALFLL 642

Homo sapiens (taxid: 9606)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 13/101 (12%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
           +G TPLH AA  G    ++T+++      +G E      L + D +G TPLHNA  N H 
Sbjct: 400 QGATPLHKAAFNGRSKCLATLIR------SGAE------LEVKDSQGGTPLHNAAYNGHS 447

Query: 90  NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 130
           +  R+L+KK    +  ++    TPL +A  +   D    +I
Sbjct: 448 DCCRILLKKG-ANVNAVDTHSSTPLHLASAAGARDTVDVLI 487

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
147799695	595	hypothetical protein VITISV_033922 [Viti	0.780	0.226	0.369	1e-17
302143222	617	unnamed protein product [Vitis vinifera]	0.820	0.230	0.406	2e-16
147820412	624	hypothetical protein VITISV_004974 [Viti	0.820	0.227	0.406	2e-16
147798514	1884	hypothetical protein VITISV_007944 [Viti	0.809	0.074	0.360	4e-14
147826716	545	hypothetical protein VITISV_009182 [Viti	0.774	0.245	0.372	4e-14
147865209	563	hypothetical protein VITISV_038601 [Viti	0.774	0.238	0.373	4e-14
296087900	589	unnamed protein product [Vitis vinifera]	0.734	0.215	0.345	5e-14
147794488	625	hypothetical protein VITISV_007072 [Viti	0.734	0.203	0.345	6e-14
297745183	270	unnamed protein product [Vitis vinifera]	0.820	0.525	0.363	9e-14
255547568	679	ankyrin repeat-containing protein, putat	0.791	0.201	0.328	1e-13

>gi|147799695|emb|CAN77325.1| hypothetical protein VITISV_033922 [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 14/149 (9%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 82
           LL + N KG+TPLH A+R G P +V   +  + A+ +  E+ P +LLR+ + EG+T LH 
Sbjct: 43  LLSEANMKGDTPLHTASRTGCPRMVELFISCSEALCDDIENAPRNLLRMVNQEGDTALHV 102

Query: 83  AVRNK-------------HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 129
           AVRN              H +VV++LVK D   L   N A ++PL +A++  L D   ++
Sbjct: 103 AVRNGHLDTALHAAVKYDHLDVVKLLVKADIELLHMDNKANESPLYLAVERGLFDFTKYM 162

Query: 130 IDQRPESLNHRLPEELTLLHSAVMRQNYG 158
           +++ P+  +HR  + LT LH+AV+R + G
Sbjct: 163 LNKCPKC-SHRGTKGLTALHAAVVRTHQG 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143222|emb|CBI20517.3| unnamed protein product [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 3/145 (2%)

Query: 22  SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
           SLL +N+ K ETPLHIAAR G   +V  ++ +A   T+      + +LR+ + EGNTPLH
Sbjct: 72  SLLTENS-KHETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGIQQVLRMRNMEGNTPLH 130

Query: 82  NAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFII-DQRPESLNH 139
            AVRN H + V +LV+  D   L  LNNA ++PL +A+D   ++I   I+ +  P SL H
Sbjct: 131 EAVRNGHHSTVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSLLH 190

Query: 140 RLPEELTLLHSAVMRQNYGEPMIFI 164
           R  +  T+LH A++R +     I I
Sbjct: 191 RSSDGQTILHRAILRADLKTMKIII 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820412|emb|CAN63354.1| hypothetical protein VITISV_004974 [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 3/145 (2%)

Query: 22  SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
           SLL +N+ K ETPLHIAAR G   +V  ++ +A   T+      + +LR+ + EGNTPLH
Sbjct: 72  SLLTENS-KHETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGIQQVLRMRNMEGNTPLH 130

Query: 82  NAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFII-DQRPESLNH 139
            AVRN H + V +LV+  D   L  LNNA ++PL +A+D   ++I   I+ +  P SL H
Sbjct: 131 EAVRNGHHSTVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSLLH 190

Query: 140 RLPEELTLLHSAVMRQNYGEPMIFI 164
           R  +  T+LH A++R +     I I
Sbjct: 191 RSSDGQTILHRAILRADLKTMKIII 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798514|emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 7/147 (4%)

Query: 17   LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGT----ESEPESLLRIT 72
            +R    LL + N KG+TPLH A+R G   +V   +  + A+        E+EP+ LL + 
Sbjct: 1309 IRLNPGLLSQANMKGDTPLHTASRTGCLGMVEQFISSSKALCYDIERIRENEPQDLLMV- 1367

Query: 73   DDEGNTPLHNAVRNKHENVVRMLVKKD-RIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
            + EG+T LH AVR  H +VV +LV  D  + L   N A ++PL +A++     IA  I++
Sbjct: 1368 NQEGDTALHVAVRYGHLDVVELLVNADIELMLHMYNKANESPLYLAVERGFFAIAKHILN 1427

Query: 132  QRPESLNHRLPEELTLLHSAVMRQNYG 158
            + P + +HR  + +T LH+AV+R + G
Sbjct: 1428 KCP-TCSHRGTKGMTALHAAVVRTHQG 1453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826716|emb|CAN61889.1| hypothetical protein VITISV_009182 [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 3/137 (2%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES---EPESLLRITDDEGNTP 79
           LL++ N KG+TPLH+AAR G  AIV  +L  A  +    ES     +++LR+T+ E +T 
Sbjct: 77  LLQQPNRKGDTPLHLAAREGHGAIVKALLDAAKTLHQEIESGVGTDKAMLRMTNKEKDTA 136

Query: 80  LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH 139
           LH AVR  H  +V  L+++D   +   N    TPL +A +    D+ C IID+   S +H
Sbjct: 137 LHEAVRYHHSEIVVSLIEEDPEFIYGANITGYTPLYMAAERGYGDLVCIIIDKTRASPSH 196

Query: 140 RLPEELTLLHSAVMRQN 156
                 T LH+AV+ ++
Sbjct: 197 SGIMGRTALHAAVIHED 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865209|emb|CAN79828.1| hypothetical protein VITISV_038601 [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 22  SLLRKNNWKGETPLHIAARVGDPAIVSTILKYA------PA-ITNGTESEPESLLRITDD 74
           SLLR+ N  G+TPLH+AAR G   +V  ++  A      P+ I NG E   E +LR  + 
Sbjct: 97  SLLRRVNKHGDTPLHLAAREGYQKVVEALIHAAKPQPPQPSDIENGVEFH-EGMLRTMNQ 155

Query: 75  EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP 134
           EG+T LH AVR +H  VV++L+K+D       N+   TPL +A +    D+   I++   
Sbjct: 156 EGDTALHEAVRYRHPKVVKLLIKEDAKFTYGPNHKGNTPLYMAAERGFDDLVDIILENSV 215

Query: 135 ESLNHRLPEELTLLHSAVMRQN 156
            S +HR  +  T LH+AV+ ++
Sbjct: 216 TSSDHRGLKGRTALHAAVISKH 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087900|emb|CBI35183.3| unnamed protein product [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 82
           LL   ++KG+TPLHIA+R G   IV   LK   A         E  L + ++  +T LH 
Sbjct: 60  LLTSADFKGDTPLHIASRTGCSDIVVCFLKSKKA---------EQALEMKNERADTALHV 110

Query: 83  AVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP 142
           AVRN H  VV+ LV+++ + L  +NN +++PL +A++     IA F+++++    +    
Sbjct: 111 AVRNGHLEVVKPLVQENSMLLDLVNNHKESPLYLAVERGFFKIANFLLEEKSSVCSCEGT 170

Query: 143 EELTLLHSAVMRQNYG 158
           + +T LH+AV+R + G
Sbjct: 171 KGMTALHAAVIRTHKG 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794488|emb|CAN67080.1| hypothetical protein VITISV_007072 [Vitis vinifera]

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 82
           LL   ++KG+TPLHIA+R G   IV   LK   A         E  L + ++  +T LH 
Sbjct: 60  LLTSADFKGDTPLHIASRTGCSDIVVCFLKSKNA---------EQALEMKNERADTALHV 110

Query: 83  AVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP 142
           AVRN H  VV+ LV+++ + L  +NN +++PL +A++     IA F+++++    +    
Sbjct: 111 AVRNGHLEVVKPLVQENSMLLDLVNNHKESPLYLAVERGFFKIANFLLEEKSSVCSCEGT 170

Query: 143 EELTLLHSAVMRQNYG 158
           + +T LH+AV+R + G
Sbjct: 171 KGMTALHAAVIRTHKG 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745183|emb|CBI39175.3| unnamed protein product [Vitis vinifera]

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 1/143 (0%)

Query: 17  LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTE-SEPESLLRITDDE 75
            R   SLL + N KG+TPLH+AAR G   +   +++ A A+ +G+     + +LR+T++E
Sbjct: 126 FRPLSSLLLQPNLKGDTPLHLAAREGYWMVTQALIEAAKALPSGSGIGADKMMLRMTNNE 185

Query: 76  GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE 135
            +T LH AVR  H NVV++L+ KD   +   N +  TPL +A +    ++   IID    
Sbjct: 186 NDTALHEAVRYNHSNVVKLLILKDPDFIYGANFSGGTPLYMAAERGFHELVQIIIDNTRT 245

Query: 136 SLNHRLPEELTLLHSAVMRQNYG 158
           S  H      T LH+AV+  N G
Sbjct: 246 SPAHSGLTGRTALHAAVICNNEG 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547568|ref|XP_002514841.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223545892|gb|EEF47395.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 3/140 (2%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 82
           LL K N+ G++PLHIAAR+G   +   ++  A  +    E E   LLR+ + + +T LH+
Sbjct: 62  LLHKPNFNGDSPLHIAARLGRVRMCRLLINCANLLEVEVEKE---LLRMQNLDHDTALHD 118

Query: 83  AVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP 142
           AVRN H   VR+L+++D      +N A ++PL +A+D    +I+  I+   P   + +  
Sbjct: 119 AVRNGHFETVRLLIQQDSQLTRVINKAGESPLFLAVDRRSYEISQHILQAAPAVCSFKGR 178

Query: 143 EELTLLHSAVMRQNYGEPMI 162
             + +LH+A++R N+   +I
Sbjct: 179 NSMNVLHAAIIRSNFMHEVI 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.774	0.209	0.323	8.9e-09
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.630	0.164	0.346	1.8e-07
FB|FBgn0016920	1726	nompC "no mechanoreceptor pote	0.809	0.081	0.308	2.2e-07
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.589	0.150	0.342	3e-07
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.739	0.207	0.284	8.8e-07
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.566	0.156	0.351	1.7e-06
UNIPROTKB|F1RZ13	1153	ANKS1A "Uncharacterized protei	0.797	0.119	0.282	1.9e-06
FB|FBgn0014018	971	Rel "Relish" [Drosophila melan	0.670	0.119	0.277	3e-06
WB|WBGene00185078	240	F40G9.17 [Caenorhabditis elega	0.849	0.612	0.302	3.3e-06
CGD|CAL0003397	249	orf19.5961 [Candida albicans (	0.768	0.534	0.240	5.2e-06

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 45/139 (32%), Positives = 71/139 (51%)

Query:    23 LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG-TESEPE--SLLRITDDEGNTP 79
             LL + N K + PLH AA  G  A+V   +     I++G +E E E  +L  + D +GNT 
Sbjct:    97 LLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNLYAMKDIDGNTA 156

Query:    80 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS-SLTDI-ACFIIDQRPESL 137
             LH A++  H      LVK + +     NN   +PL  AI + SLT + A   +  +  +L
Sbjct:   157 LHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVEAMMYVPGQTCNL 216

Query:   138 NHRLPEELTLLHSAVMRQN 156
               +L    +L+H+A+  +N
Sbjct:   217 ASKLEGRKSLVHAALKAKN 235

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 44/127 (34%), Positives = 64/127 (50%)

Query:     8 TMDH-ELLNVLRRRDSLLRK---NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
             T  H +++N+L   DS L K   NN  G+T LH AAR+G   +V +++   P+I  G   
Sbjct:   267 TQGHIDVVNLLLETDSNLAKIAKNN--GKTALHSAARMGHVEVVKSLIGKDPSI--GFR- 321

Query:    64 EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT 123
                     TD +G T LH AV+ +++ +V  LVK D   L   +N   TPL IA +    
Sbjct:   322 --------TDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNKGRI 373

Query:   124 DIA-CFI 129
              I  C +
Sbjct:   374 KIVRCLV 380

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0016920 nompC "no mechanoreceptor potential C" [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 45/146 (30%), Positives = 69/146 (47%)

Query:    12 ELLNVLRRRDSLLRKNNWK-GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR 70
             ++L+VL+  +SL R N+ K G TPLH+AA  G    V  +L   PA         +SL  
Sbjct:   910 QVLDVLKSTNSL-RINSKKLGLTPLHVAAYYGQADTVRELLTSVPATVKSETPTGQSLFG 968

Query:    71 -ITDDEGNTPLHNAVRNKHENVVRMLVKKD--RIPLGYLNNAEQTPLSIAIDSSLTDIAC 127
              +  + G TPLH A  + +ENVVR+L+     ++    + N    PL +A       +  
Sbjct:   969 DLGTESGMTPLHLAAFSGNENVVRLLLNSAGVQVDAATIENG-YNPLHLACFGGHMSVVG 1027

Query:   128 FIIDQRPESLNHRLPEELTLLHSAVM 153
              ++ +  E L  +     T LH A M
Sbjct:  1028 LLLSRSAELLQSQDRNGRTGLHIAAM 1053

GO:0005262 "calcium channel activity" evidence=IEA;ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0005216 "ion channel activity" evidence=ISS

GO:0008381 "mechanically-gated ion channel activity" evidence=NAS;TAS

GO:0050954 "sensory perception of mechanical stimulus" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0030506 "ankyrin binding" evidence=NAS

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=TAS

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0040011 "locomotion" evidence=IMP

GO:0050975 "sensory perception of touch" evidence=IMP

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 38/111 (34%), Positives = 55/111 (49%)

Query:    16 VLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE 75
             +L+R    L   + + +  LH+AA+ G   ++  IL+         +   E L+   D  
Sbjct:   369 ILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCK------DKNKEKLINEEDAN 422

Query:    76 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA---IDSSLT 123
             GNTPLH A +N H  VV ML   +R+ L  LN+   T L IA   +DSS T
Sbjct:   423 GNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEKNMDSSYT 473

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 39/137 (28%), Positives = 70/137 (51%)

Query:    22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
             +LL+  N  GET LH+AAR G   IV  ++++   IT    S  ++ +      G+T LH
Sbjct:    97 NLLQNVNLMGETTLHVAARAGSLNIVEILVRF---ITES--SSYDAFIAAKSKNGDTALH 151

Query:    82 NAVRNKHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE-SLNH 139
              A++ KH  V   LV  K  +     NN E +PL +A+++   ++   +++     S+  
Sbjct:   152 AALKGKHVEVAFCLVSVKHDVSFDK-NNDEASPLYMAVEAGYHELVLKMLESSSSPSILA 210

Query:   140 RLPEELTLLHSAVMRQN 156
              +    +++H+A M+ N
Sbjct:   211 SMFSGKSVIHAA-MKAN 226

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 39/111 (35%), Positives = 55/111 (49%)

Query:     9 MDH-ELLNVLRRRDSLLR-KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPE 66
             M H E++  L   D+ +  + + KG+T LH+A +  +  IV  ++K  PAI         
Sbjct:   266 MGHREVVKSLIGNDASIGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAI--------- 316

Query:    67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
               L + D +GNTPLH A       +VR LV  D I L  +N A  T L IA
Sbjct:   317 --LSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDIA 365

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1RZ13 ANKS1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 43/152 (28%), Positives = 71/152 (46%)

Query:    12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESE------- 64
             +++ VL R D+L    + KG  PLH+AA  GD  IV  ++   P+ T   E         
Sbjct:    92 DVVEVLLRNDALTNVADCKGCYPLHLAAWKGDAQIVRLLIHQGPSHTKVNEQNALEIKEL 151

Query:    65 ----P-ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID 119
                 P ++ L   +++  T LH A +  H  VV++L+++   P    NN  +TPL +A  
Sbjct:   152 KKYGPFDTYLNAKNNDNETALHCAAQYGHTEVVKVLLEELTDPT-MRNNKFETPLDLAAL 210

Query:   120 SSLTDIACFIIDQRPESLNHRLPEELTLLHSA 151
                 D+   +++  P  L+    +  T LH A
Sbjct:   211 YGRLDVVKMLLNAHPNLLSCNTKKH-TPLHLA 241

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0014018 Rel "Relish" [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 35/126 (27%), Positives = 59/126 (46%)

Query:    26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
             KNN  G TPLH+A +    + V + L   P +        +  L +T+D+G TPLH A+R
Sbjct:   670 KNN-AGNTPLHVAVKEEHLSCVESFLNGVPTV--------QLDLSLTNDDGLTPLHMAIR 720

Query:    86 NKHENVVRMLVKKDRIPLGYLNNAE-QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE 144
                 +V + L+  DR  +   N  +    L +A+     ++   I+D + E+L   L  +
Sbjct:   721 QNKYDVAKKLISYDRTSISVANTMDGNNALHMAVLEQSVELLVLILDAQNENLTDILQAQ 780

Query:   145 LTLLHS 150
                 H+
Sbjct:   781 NAAGHT 786

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA;TAS

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IEP;NAS;IMP;TAS

GO:0006955 "immune response" evidence=IEP;IMP;TAS

GO:0006967 "positive regulation of antifungal peptide biosynthetic process" evidence=IMP

GO:0061057 "peptidoglycan recognition protein signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0009617 "response to bacterium" evidence=TAS

GO:0050829 "defense response to Gram-negative bacterium" evidence=IGI;IMP;TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0045087 "innate immune response" evidence=IDA;NAS

GO:0006964 "positive regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria" evidence=IMP

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0045089 "positive regulation of innate immune response" evidence=IMP

GO:0034198 "cellular response to amino acid starvation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IMP

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0051607 "defense response to virus" evidence=IMP

GO:0048935 "peripheral nervous system neuron development" evidence=IMP

WB|WBGene00185078 F40G9.17 [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 49/162 (30%), Positives = 74/162 (45%)

Query:    10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLL 69
             D E   +L R   L+   +  G + +H AA VG       +L++A  I N    +PE + 
Sbjct:    29 DDEAKRLLTRYPKLVGYTDDSGRSTIHFAA-VGGSL---PLLQFA--ILN----DPE-MA 77

Query:    70 RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 129
               TDD G TPL  A      +VVR L+    + + + N+ +QT L  A   +  +I   +
Sbjct:    78 HKTDDLGWTPLMIASSAGRVDVVRYLLTLPDVDVKHTNSNKQTSLHYACSKNHVEIVKLL 137

Query:   130 IDQRPESLNHRLPEEL--TLLHSAVMRQNYGEPMIFISLNKC 169
             I+  P  +N  LP++   T LH A  R N       +S  KC
Sbjct:   138 IEADPNIIN--LPDKFGATALHRAASRGNDVIVRALVSTGKC 177

GO:0040010 "positive regulation of growth rate" evidence=IMP

CGD|CAL0003397 orf19.5961 [Candida albicans (taxid:5476)]

 Score = 119 (46.9 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 33/137 (24%), Positives = 68/137 (49%)

Query:    31 GETPLHIAARVGDPAIVSTILKYAPA---ITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
             G TPLHIAA +G+  I + +L+ A +    T+   ++PE  + +  + G T LH A+   
Sbjct:    80 GWTPLHIAASLGNSTIFNQLLRRANSSSTTTSNNSTQPELDVNLQTNSGTTCLHLAISKN 139

Query:    88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 147
             + ++V+ L++  +      +    TPL  A       I   ++++   ++N +  +  T 
Sbjct:   140 NYDIVKELIETYKANCRIKDKKGYTPLHRAASIGSIPIIKLLVEKGKININAQDNDGWTS 199

Query:   148 LHSAVMRQNYGEPMIFI 164
             LH A + + +G+  + +
Sbjct:   200 LHHA-LAEGHGDVAVLL 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027408001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (668 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	3e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.002
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 3e-17
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 14/129 (10%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           +  G TPLH+AA  G   +V  +L+    +               D++G TPLH A +N 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN------------AKDNDGRTPLHLAAKNG 51

Query: 88  HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 147
           H  +V++L++K        +    TPL +A  +   D+   ++      +N R  +  T 
Sbjct: 52  HLEIVKLLLEKGADVN-ARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTP 109

Query: 148 LHSAVMRQN 156
           LH A    +
Sbjct: 110 LHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 13/117 (11%)

Query: 10  DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLL 69
             E++ +L    + +   +  G TPLH+AA+ G   IV  +L+    +            
Sbjct: 19  HLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV------------ 66

Query: 70  RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
              D +GNTPLH A RN + +VV++L+K         +   +TPL +A  +   ++ 
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 130
             D++G TPLH A  N H  VV++L++         +N  +TPL +A  +   +I   ++
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 131 DQRPESLNHRLPEELTLLHSAVMRQNY 157
           ++    +N R  +  T LH A    N 
Sbjct: 61  EKGA-DVNARDKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 10  DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLL 69
             E++ +L  + + +   +  G TPLH+AAR G+  +V  +LK+   +            
Sbjct: 52  HLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN----------- 100

Query: 70  RITDDEGNTPLHNAVRNKHENVVRMLV 96
              D +G TPLH A +N H  VV++L+
Sbjct: 101 -ARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.9 bits (120), Expect = 8e-09
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
          N    +T LH+AAR G+  IV  +L++   +               D +GNT LH A RN
Sbjct: 24 NLGDTDTALHLAARNGNLEIVKLLLEHGADVNA------------KDKDGNTALHLAARN 71

Query: 87 KHENVVRMLVKKD 99
           +  +V++L++  
Sbjct: 72 GNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 35  LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRM 94
           LH+AA+ G+  +V  +L+    +  G                +T LH A RN +  +V++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--------------DTALHLAARNGNLEIVKL 46

Query: 95  LVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE 135
           L++     +   +    T L +A  +   +I   +++   +
Sbjct: 47  LLEHG-ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 44/165 (26%)

Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAA--RVGDPAIVSTILKYAPAITNGTESEPESLL 69
           E++ +L    + +   +  G TPL  A   +    +IV  +L    A  N   S+ E+LL
Sbjct: 87  EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG-ANVNIKNSDGENLL 145

Query: 70  R----------------------------------------ITDDEGNTPLHNAVRNKHE 89
                                                    I D  G TPLH AV N + 
Sbjct: 146 HLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP 205

Query: 90  NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP 134
             V+ L+         +N    TPL IAI ++  +I   +++  P
Sbjct: 206 EFVKYLLDL-GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)

Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
          T LH AA  G   +V  +L+    I              TD++GNT LH A  N +  V+
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDIN------------RTDEDGNTALHIAAENGNLEVL 50

Query: 93 RMLV 96
          ++L+
Sbjct: 51 KLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.3 bits (92), Expect = 4e-05
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 68  LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
            L  TD  GNTPLH A +     +V+ L+K   + L   ++   T L +A
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 80  LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH 139
           LH A +N +  +V++L++K    +   +    T L +A  +   +I   +++     +N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKG-ADVNLGDT--DTALHLAARNGNLEIVKLLLEHGA-DVNA 56

Query: 140 RLPEELTLLHSAVMRQNY 157
           +  +  T LH A    N 
Sbjct: 57  KDKDGNTALHLAARNGNL 74

Length = 91

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 12/66 (18%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
           KG TPLHIAA  G    V  +LK+A  +             I D  GNT L NA+  KH 
Sbjct: 557 KGRTPLHIAASKGYEDCVLVLLKHACNV------------HIRDANGNTALWNAISAKHH 604

Query: 90  NVVRML 95
            + R+L
Sbjct: 605 KIFRIL 610

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 75 EGNTPLHNAVRNKHENVVRMLVKK 98
          +GNTPLH A RN H  VV++L++ 
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 23  LLRKNNWKGETPLHIAARVG--DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 80
           L+ + N  G+  +HI +     DP     +L    A  NG E             GNTPL
Sbjct: 47  LVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV----------FGNTPL 96

Query: 81  HNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID 119
           H AV  ++  +   L  +  + +  LN A +TP  +A +
Sbjct: 97  HIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACE 135

Length = 154

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 36/153 (23%), Positives = 54/153 (35%), Gaps = 20/153 (13%)

Query: 11  HELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR 70
              L +    D  L   +  G  PLH AA  GD  IV  +L               + + 
Sbjct: 53  LSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLL------------ASGADVN 100

Query: 71  ITDDEGNTPLHNAVRNKHEN-----VVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLT 123
             D +G+TPLH A  N +       V ++L++   D       +    TPL  A  +   
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160

Query: 124 DIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 156
           DI   +++      N R    +T L  A     
Sbjct: 161 DIVELLLE-AGADPNSRNSYGVTALDPAAKNGR 192

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 15/109 (13%)

Query: 11  HELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR 70
            +++ +L  + +     +  GE+PLH AA  GD A +  ++ +   I N  ++       
Sbjct: 170 FDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN------- 222

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID 119
                G TPLHNA+ + + + + +L+    I    ++ +  TPL  AI+
Sbjct: 223 -----GFTPLHNAIIH-NRSAIELLINNASINDQDIDGS--TPLHHAIN 263

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           ++ G TPLHIA   G   +V  +L++    T            + D +G TPL  A  N 
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADPT------------LLDKDGKTPLELAEENG 159

Query: 88  HENVVRML 95
              VV++L
Sbjct: 160 FREVVQLL 167

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 24/140 (17%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           + + +T LH A + GD   +  + +Y   +             I DD G  P+H A+++ 
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVN------------IEDDNGCYPIHIAIKHN 168

Query: 88  HENVVRMLVKKDRIPLGYLN---NAEQTPLSIAIDSSLTDIAC--FIIDQRPESLNHRLP 142
             +++++L++K      Y N   N  ++PL  A +    D AC   +ID     +N +  
Sbjct: 169 FFDIIKLLLEKG----AYANVKDNNGESPLHNAAEYG--DYACIKLLIDHGNHIMN-KCK 221

Query: 143 EELTLLHSAVMRQNYGEPMI 162
              T LH+A++       ++
Sbjct: 222 NGFTPLHNAIIHNRSAIELL 241

Length = 434

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 82
            L   +  G+  +HIAA   +  + + I+ +   I  G +   + +L     EG+T LH 
Sbjct: 52  ALNATDDAGQMCIHIAAEKHEAQLAAEIIDHL--IELGADINAQEML-----EGDTALHL 104

Query: 83  AVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 120
           A   +  ++   L  +  I L + N   ++P  +AID+
Sbjct: 105 AAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN 142

Length = 169

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 17 LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG 76
          L      L   +  G TPLH+AA+ G   +V  +LK                L + D +G
Sbjct: 2  LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP------------GVDLNLRDSDG 49

Query: 77 NTPLHNA 83
           T L  A
Sbjct: 50 LTALDLA 56

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 75 EGNTPLHNAVRNKHENVVRMLVKKD 99
          +G TPLH A  N +  VV++L+ K 
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKG 25

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02741	169	hypothetical protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02989	494	ankyrin repeat protein; Provisional	99.93
PHA02736	154	Viral ankyrin protein; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02792	631	ankyrin-like protein; Provisional	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.85
PHA02792	631	ankyrin-like protein; Provisional	99.84
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.84
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.81
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.74
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.73
KOG0514	452	consensus Ankyrin repeat protein [General function	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.62
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.61
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.6
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.58
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.57
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.57
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.57
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.55
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.46
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.1
PF13606	30	Ank_3: Ankyrin repeat	99.09
PF13606	30	Ank_3: Ankyrin repeat	99.09
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.03
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.01
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.95
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.95
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.94
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.92
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.91
KOG0522	560	consensus Ankyrin repeat protein [General function	98.81
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.8
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.79
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.77
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
KOG0522	560	consensus Ankyrin repeat protein [General function	98.68
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
KOG2384	223	consensus Major histocompatibility complex protein	98.49
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.47
KOG0511	516	consensus Ankyrin repeat protein [General function	98.41
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.35
KOG2384	223	consensus Major histocompatibility complex protein	98.27
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.25
KOG0511	516	consensus Ankyrin repeat protein [General function	98.19
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.16
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.07
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.78
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.67
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.6
KOG2505	591	consensus Ankyrin repeat protein [General function	97.44
KOG2505	591	consensus Ankyrin repeat protein [General function	97.27
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.08
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.25
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.82
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.17

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-34  Score=183.71  Aligned_cols=149  Identities=23%  Similarity=0.290  Sum_probs=137.9

Q ss_pred             hHHHHHHHH-hcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhh-CcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660           10 DHELLNVLR-RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus        10 ~~~~~~~l~-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      +.+++.||+ ..+..+|..|..||||||+|++.|+.++|+.|+.. |+++            +..+..|.||||+|+..|
T Consensus        50 ~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv------------na~tn~G~T~LHyAagK~  117 (226)
T KOG4412|consen   50 HVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV------------NATTNGGQTCLHYAAGKG  117 (226)
T ss_pred             chhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc------------ceecCCCcceehhhhcCC
Confidence            578999998 56778899999999999999999999999999988 8775            467789999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      +.+++.+|+++|+.+ ..+|..|.||||-|+..|.++++++|+..+ +.+|..|.+|+||||.|..-|+.++...|+.+|
T Consensus       118 r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~-a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  118 RLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQG-APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             hhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcC-CCCCcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            999999999999888 999999999999999999999999999999 999999999999999998889999999999999


Q ss_pred             cccCC
Q 030660          168 KCLSI  172 (173)
Q Consensus       168 ~~~~~  172 (173)
                      |++.+
T Consensus       196 Ad~~~  200 (226)
T KOG4412|consen  196 ADTDR  200 (226)
T ss_pred             cceee
Confidence            98754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.3e-32  Score=175.42  Aligned_cols=144  Identities=26%  Similarity=0.267  Sum_probs=127.5

Q ss_pred             HHHhcccchhccCC-CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHH
Q 030660           16 VLRRRDSLLRKNNW-KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRM   94 (173)
Q Consensus        16 ~l~~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~   94 (173)
                      ++-+..-.++.++. +|+|||||||+.|+.+++++|++.- .          ..++.+|..||||||+|+..|..++++.
T Consensus        22 l~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~-n----------v~~ddkDdaGWtPlhia~s~g~~evVk~   90 (226)
T KOG4412|consen   22 LIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQP-N----------VKPDDKDDAGWTPLHIAASNGNDEVVKE   90 (226)
T ss_pred             HHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcC-C----------CCCCCccccCCchhhhhhhcCcHHHHHH
Confidence            33334435666766 8999999999999999999999722 1          1245679999999999999999999999


Q ss_pred             HHhc-CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660           95 LVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus        95 Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+.+ ++++ +.+++.|.|+||+|+..+..++.++|+++| +.++.+|..|.||||-|+.-|+.+++++|++.|+.++.
T Consensus        91 Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~  167 (226)
T KOG4412|consen   91 LLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT  167 (226)
T ss_pred             HhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcC-CCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc
Confidence            9998 7877 999999999999999999999999999999 99999999999999999999999999999999988763

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=8.2e-31  Score=186.04  Aligned_cols=148  Identities=15%  Similarity=0.127  Sum_probs=126.9

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCC-CcHHHHHHhcC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG-NTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~a~~~~   87 (173)
                      -+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|+++            +..+..| .||||+|+..|
T Consensus        72 g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi------------n~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         72 EDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL------------MFYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc------------CccCCCCCcHHHHHHHHcC
Confidence            3567888888888888888888888888888888888888888888774            3455566 48999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCC-CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcH-HHHHHHhCCCcHHHHHHh
Q 030660           88 HENVVRMLVKKDRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL-LHSAVMRQNYGEPMIFIS  165 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~ll~  165 (173)
                      +.+++++|++.++..   .+ ..|.||||.|+.+|+.+++++|+++| ++++..+..|.|| ||+|+..|+.+++++|++
T Consensus       140 ~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~  215 (284)
T PHA02791        140 DVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK  215 (284)
T ss_pred             CHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHH
Confidence            999999999987543   23 35899999999999999999999999 8999999888877 999999999999999999


Q ss_pred             cccccCC
Q 030660          166 LNKCLSI  172 (173)
Q Consensus       166 ~~~~~~~  172 (173)
                      +|++++.
T Consensus       216 ~Ga~in~  222 (284)
T PHA02791        216 YDINIYS  222 (284)
T ss_pred             CCCCCcc
Confidence            9999875

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.2e-30  Score=192.86  Aligned_cols=162  Identities=15%  Similarity=0.159  Sum_probs=139.4

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Cc
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ES   67 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~   67 (173)
                      -+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.....+.                     +.
T Consensus        13 g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~   92 (413)
T PHA02875         13 GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK   92 (413)
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence            467899999999999999999999999999999999999999999988765432221                     11


Q ss_pred             -cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCc
Q 030660           68 -LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT  146 (173)
Q Consensus        68 -~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  146 (173)
                       ..+..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++++ ++++..|..|.|
T Consensus        93 ~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~T  170 (413)
T PHA02875         93 FADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHK-ACLDIEDCCGCT  170 (413)
T ss_pred             cccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCC
Confidence             11234567899999999999999999999999988 788889999999999999999999999998 889999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          147 LLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       147 ~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |||+|+..|+.+++++|+++|++++.
T Consensus       171 pL~~A~~~g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        171 PLIIAMAKGDIAICKMLLDSGANIDY  196 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCc
Confidence            99999999999999999999998864

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=184.62  Aligned_cols=162  Identities=18%  Similarity=0.192  Sum_probs=137.2

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCC-----------CCccccccCCCCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESE-----------PESLLRITDDEGN   77 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-----------~~~~~~~~~~~g~   77 (173)
                      -+.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++|++........           .+..++..+..|.
T Consensus        46 g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~  125 (434)
T PHA02874         46 GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELK  125 (434)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCc
Confidence            45677888888888888777788888888888888888888888776643211110           1333556788999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCC
Q 030660           78 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY  157 (173)
Q Consensus        78 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  157 (173)
                      ||||+|+..|+.+++++|++.|+++ +..+..|.||+|+|+..++.+++++|+++| ++++..+..|.||||+|+..|+.
T Consensus       126 T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~g~~  203 (434)
T PHA02874        126 TFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEYGDY  203 (434)
T ss_pred             cHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999998 888999999999999999999999999999 99999999999999999999999


Q ss_pred             cHHHHHHhcccccCC
Q 030660          158 GEPMIFISLNKCLSI  172 (173)
Q Consensus       158 ~~~~~ll~~~~~~~~  172 (173)
                      +++++|+++|+++..
T Consensus       204 ~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        204 ACIKLLIDHGNHIMN  218 (434)
T ss_pred             HHHHHHHhCCCCCcC
Confidence            999999999998753

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=2e-28  Score=173.87  Aligned_cols=162  Identities=19%  Similarity=0.179  Sum_probs=121.4

Q ss_pred             CCccchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC-------------------
Q 030660            5 LPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-------------------   65 (173)
Q Consensus         5 ~~~~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-------------------   65 (173)
                      +..+...+++++|++.|+  +..|..|+||||+|+..|+.+++++|++.|++++.......                   
T Consensus         6 ~~~~~~~~~~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          6 INTWKSKQLKSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             hcccCHHHHHHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            344556777788887776  35677788888888888888888888887776544322111                   


Q ss_pred             CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCC-CCHHHHHHhcCcHHHHHHHHhcCCCcccccC-CC
Q 030660           66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE-QTPLSIAIDSSLTDIACFIIDQRPESLNHRL-PE  143 (173)
Q Consensus        66 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~  143 (173)
                      +..++..+..|+||||+|+..|+.+++++|++.|++. +..+..| .||+|.|+..++.+++++|++++ .+.  .+ ..
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~-~~~--~d~~~  159 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PST--FDLAI  159 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcC-Ccc--ccccc
Confidence            3344567788888888888888888888888888877 6666666 48888888888888888888876 322  22 24


Q ss_pred             CCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          144 ELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       144 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |.||||+|+..|+.+++++|+++|++++.
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~  188 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDYMTSTNT  188 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            78999999999999999999999998764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2e-28  Score=186.76  Aligned_cols=149  Identities=21%  Similarity=0.363  Sum_probs=136.8

Q ss_pred             chHHHHHHHHhcccchhccCCC-CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWK-GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      .+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|++.|+++            +..+..|.||||.|+..+
T Consensus       145 ~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~------------n~~d~~g~tpLh~A~~~~  212 (477)
T PHA02878        145 IEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV------------NIPDKTNNSPLHHAVKHY  212 (477)
T ss_pred             HHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC------------CCcCCCCCCHHHHHHHhC
Confidence            3456999999999999999998 999999999999999999999999885            467889999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhc-CcHHHHHHHHhcCCCcccccCC-CCCcHHHHHHHhCCCcHHHHHHh
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS-SLTDIACFIIDQRPESLNHRLP-EELTLLHSAVMRQNYGEPMIFIS  165 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~ll~  165 (173)
                      +.+++++|++.|+++ +.++..|.||||+|+.. ++.+++++|+++| ++++..+. .|.||||+|  .++.+++++|++
T Consensus       213 ~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-advn~~~~~~g~TpLh~A--~~~~~~v~~Ll~  288 (477)
T PHA02878        213 NKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHG-VDVNAKSYILGLTALHSS--IKSERKLKLLLE  288 (477)
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC-CCCCccCCCCCCCHHHHH--ccCHHHHHHHHH
Confidence            999999999999999 88899999999999976 6899999999999 99998875 799999999  578899999999


Q ss_pred             cccccCCC
Q 030660          166 LNKCLSIV  173 (173)
Q Consensus       166 ~~~~~~~~  173 (173)
                      +|++++++
T Consensus       289 ~gadin~~  296 (477)
T PHA02878        289 YGADINSL  296 (477)
T ss_pred             CCCCCCCc
Confidence            99998863

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.7e-28  Score=185.28  Aligned_cols=163  Identities=17%  Similarity=0.220  Sum_probs=141.0

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCC-------------------------
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTE-------------------------   62 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------------------   62 (173)
                      ..+.+++++|+++|++++.++..|+||||+||..|+.+++++|++.+........                         
T Consensus        47 ~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~  126 (477)
T PHA02878         47 ARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYK  126 (477)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCccc
Confidence            3578999999999999999999999999999999999988888876543321000                         


Q ss_pred             --CC-------------------------CCccccccCCC-CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 030660           63 --SE-------------------------PESLLRITDDE-GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  114 (173)
Q Consensus        63 --~~-------------------------~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  114 (173)
                        ..                         .+..++..+.. |.||||+|+..|+.+++++|++.|+++ +..+..|.|||
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpL  205 (477)
T PHA02878        127 NIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPL  205 (477)
T ss_pred             CcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHH
Confidence              00                         03334556667 999999999999999999999999998 88899999999


Q ss_pred             HHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHh-CCCcHHHHHHhcccccCC
Q 030660          115 SIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR-QNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       115 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~ll~~~~~~~~  172 (173)
                      |.|+..++.+++++|++.| ++++..|..|.||||+|+.. ++.+++++|+++|++++.
T Consensus       206 h~A~~~~~~~iv~~Ll~~g-a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~  263 (477)
T PHA02878        206 HHAVKHYNKPIVHILLENG-ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA  263 (477)
T ss_pred             HHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc
Confidence            9999999999999999999 99999999999999999975 789999999999999875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=183.67  Aligned_cols=151  Identities=21%  Similarity=0.217  Sum_probs=126.0

Q ss_pred             chHHHHHHHHhc-ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      -+++.++.+++. |..++..|.+|.|+||||+.+++.+++++|+++|++++...           ..-+.||||+|+++|
T Consensus        55 G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g-----------G~l~stPLHWAar~G  123 (600)
T KOG0509|consen   55 GELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIG-----------GVLGSTPLHWAARNG  123 (600)
T ss_pred             chHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccC-----------CCCCCCcchHHHHcC
Confidence            456777888777 88888888888888888888888888888888888875422           256778888888888


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      +..++.+|+++|+++ +.+|..|.+|+|.|++.++...+-+|+.++ ++++..|++|+|||++|+.+|....++.|+..|
T Consensus       124 ~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            888888888888888 888888888888888888888888888888 888888888888888888888887788888888


Q ss_pred             cccCC
Q 030660          168 KCLSI  172 (173)
Q Consensus       168 ~~~~~  172 (173)
                      +.+..
T Consensus       202 a~~~~  206 (600)
T KOG0509|consen  202 ASLLL  206 (600)
T ss_pred             ccccc
Confidence            87654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6e-28  Score=181.22  Aligned_cols=129  Identities=20%  Similarity=0.240  Sum_probs=109.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      .|.||||+|+..|+.+++++|++.|++            ++..+..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus       101 ~g~tpL~~A~~~~~~~iv~~Ll~~gad------------~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~-~~~d~~  167 (413)
T PHA02875        101 DGMTPLHLATILKKLDIMKLLIARGAD------------PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL-DIEDCC  167 (413)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCC
Confidence            445555555555555555555555544            3567788999999999999999999999999988 888999


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCC-CcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE-LTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |.||||.|+..|+.+++++|+++| ++++..+..| .||+|+|+..|+.+++++|+++|+++++
T Consensus       168 g~TpL~~A~~~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        168 GCTPLIIAMAKGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            999999999999999999999999 9999888776 5899999999999999999999999875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.6e-28  Score=182.13  Aligned_cols=148  Identities=25%  Similarity=0.234  Sum_probs=136.2

Q ss_pred             hHHHHHHHHhcccchhccCC-CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660           10 DHELLNVLRRRDSLLRKNNW-KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      ..+++++|+++|+++|..+. -+.||||||++.|+..+|..|+++|+++            ..+|..|.+|+|.|+..++
T Consensus        90 rl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp------------t~~D~~G~~~lHla~~~~~  157 (600)
T KOG0509|consen   90 RLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP------------TLKDKQGLTPLHLAAQFGH  157 (600)
T ss_pred             cHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC------------ceecCCCCcHHHHHHHhCc
Confidence            35789999999999999984 5899999999999999999999999997            4688999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL-PEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      .-++.+|+.+++++ +.+|.+|+||||+|+..+....+..|++.+ +.+...| .+|.||||+|+..|+.+.++.+++.|
T Consensus       158 ~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~-a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~  235 (600)
T KOG0509|consen  158 TALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFG-ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGG  235 (600)
T ss_pred             hHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhc-ccccccccccCCchHHHHHhcCCcceEehhhhcC
Confidence            99999999999888 999999999999999999888799999999 8888887 99999999999999999999777777


Q ss_pred             cccC
Q 030660          168 KCLS  171 (173)
Q Consensus       168 ~~~~  171 (173)
                      ++..
T Consensus       236 ~~~d  239 (600)
T KOG0509|consen  236 ADLD  239 (600)
T ss_pred             Cccc
Confidence            7654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.8e-28  Score=183.15  Aligned_cols=92  Identities=21%  Similarity=0.172  Sum_probs=46.4

Q ss_pred             CcHHHHHHhcCC--HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHh
Q 030660           77 NTPLHNAVRNKH--ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  154 (173)
Q Consensus        77 ~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  154 (173)
                      .||+|.|+..+.  .+++++|++.|+++ +.++..|.||||.|+..++.+++++|+++| ++++..+..|.||+++|+..
T Consensus       216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        216 ETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVYGFTPLHYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             HhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHh
Confidence            444444444444  44444444444444 444445555555555555555555555555 45555555555555555555


Q ss_pred             CCCcHHHHHHhccccc
Q 030660          155 QNYGEPMIFISLNKCL  170 (173)
Q Consensus       155 ~~~~~~~~ll~~~~~~  170 (173)
                      ++.+++++|+++|+++
T Consensus       294 ~~~~iv~~Ll~~g~~i  309 (480)
T PHA03100        294 NNKEIFKLLLNNGPSI  309 (480)
T ss_pred             CCHHHHHHHHhcCCCH
Confidence            5555555555555543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.2e-27  Score=179.18  Aligned_cols=150  Identities=21%  Similarity=0.312  Sum_probs=111.0

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE   89 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~   89 (173)
                      ..++++.+++.|++++.++..|.||||+|+..|+.+++++|++.|++++            ..+..|.||||+|+..+..
T Consensus       103 ~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n------------~~d~~g~tpLh~A~~~~~~  170 (434)
T PHA02874        103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN------------IEDDNGCYPIHIAIKHNFF  170 (434)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC------------CcCCCCCCHHHHHHHCCcH
Confidence            4567777777788888888888888888888888888888888887753            4455666666666666666


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCC------------------------------Ccccc
Q 030660           90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP------------------------------ESLNH  139 (173)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~------------------------------~~~~~  139 (173)
                      +++++|++.|+.+ +..+..|.||+|.|+..++.+++++|+++++                              ++++.
T Consensus       171 ~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~  249 (434)
T PHA02874        171 DIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASIND  249 (434)
T ss_pred             HHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCC
Confidence            6666666666655 5556666666666666666666666666551                              34556


Q ss_pred             cCCCCCcHHHHHHHhC-CCcHHHHHHhcccccCC
Q 030660          140 RLPEELTLLHSAVMRQ-NYGEPMIFISLNKCLSI  172 (173)
Q Consensus       140 ~~~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~  172 (173)
                      .|..|.||||+|+..+ +.+++++|+++|+++++
T Consensus       250 ~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~  283 (434)
T PHA02874        250 QDIDGSTPLHHAINPPCDIDIIDILLYHKADISI  283 (434)
T ss_pred             cCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCC
Confidence            6778888888888865 77999999999998875

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1e-27  Score=183.01  Aligned_cols=151  Identities=21%  Similarity=0.226  Sum_probs=129.2

Q ss_pred             ccchHHHHHHHHhcccchhccCCCCCcHHHHHHHhC--CHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660            7 TTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVG--DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV   84 (173)
Q Consensus         7 ~~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~   84 (173)
                      ..-+.+++++|+++|++++..+..|.||||+|+..+  +.+++++|+++|+++            +..+..|.||||+|+
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di------------n~~d~~g~tpL~~A~  184 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI------------NAKNRYGYTPLHIAV  184 (480)
T ss_pred             ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc------------ccccCCCCCHHHHHH
Confidence            456889999999999999999999999999999999  999999999999885            456779999999999


Q ss_pred             hcCC-HHHHHHHHhcCCCCCCCCCCCC------CCHHHHHHhcCc--HHHHHHHHhcCCCcccccCCCCCcHHHHHHHhC
Q 030660           85 RNKH-ENVVRMLVKKDRIPLGYLNNAE------QTPLSIAIDSSL--TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  155 (173)
Q Consensus        85 ~~~~-~~~~~~Ll~~~~~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  155 (173)
                      ..|+ .-+--++-.....  +..+..|      .||+|.|+..++  .+++++|+++| ++++..|..|.||||+|+..|
T Consensus       185 ~~~~~~iv~~Ll~~ga~~--~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL~~A~~~~  261 (480)
T PHA03100        185 EKGNIDVIKFLLDNGADI--NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPLHYAVYNN  261 (480)
T ss_pred             HhCCHHHHHHHHHcCCCc--cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC
Confidence            8875 3333333332221  2334555      899999999999  99999999999 999999999999999999999


Q ss_pred             CCcHHHHHHhcccccCC
Q 030660          156 NYGEPMIFISLNKCLSI  172 (173)
Q Consensus       156 ~~~~~~~ll~~~~~~~~  172 (173)
                      +.+++++|+++|+++++
T Consensus       262 ~~~iv~~Ll~~gad~n~  278 (480)
T PHA03100        262 NPEFVKYLLDLGANPNL  278 (480)
T ss_pred             CHHHHHHHHHcCCCCCc
Confidence            99999999999998875

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=2.4e-27  Score=178.68  Aligned_cols=161  Identities=16%  Similarity=0.211  Sum_probs=108.9

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------   65 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------   65 (173)
                      ..+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.....+.                      
T Consensus        49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~  128 (446)
T PHA02946         49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ  128 (446)
T ss_pred             CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999765433332                      


Q ss_pred             -Ccccc-ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcC--cHHHHHHHHhcCCCcccccC
Q 030660           66 -ESLLR-ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS--LTDIACFIIDQRPESLNHRL  141 (173)
Q Consensus        66 -~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~  141 (173)
                       +..++ ..+..|.|||| |+..+..+++++|++.|++. +..+..|+||+|.|+..+  +.+++++|+++| ++++..|
T Consensus       129 ~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin~~d  205 (446)
T PHA02946        129 YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLG-ISPSKPD  205 (446)
T ss_pred             cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCcccC
Confidence             11111 12445555554 34445555555555555555 555666666666655533  346666666666 6666667


Q ss_pred             CCCCcHHHHHHHhC--CCcHHHHHHhcccccCC
Q 030660          142 PEELTLLHSAVMRQ--NYGEPMIFISLNKCLSI  172 (173)
Q Consensus       142 ~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~  172 (173)
                      ..|.||||+|+..|  +.+++++|+. |++++.
T Consensus       206 ~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~  237 (446)
T PHA02946        206 HDGNTPLHIVCSKTVKNVDIINLLLP-STDVNK  237 (446)
T ss_pred             CCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCC
Confidence            77777777777654  5566666664 566553

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=2e-27  Score=185.75  Aligned_cols=149  Identities=21%  Similarity=0.208  Sum_probs=128.5

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCC--HHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHH----
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGD--PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA----   83 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a----   83 (173)
                      +.+++++|++.|++++.+|..|+||||+|+..|+  .+++++|+++|+++            +.++..|.||||.|    
T Consensus       191 ~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV------------N~kD~~G~TPLh~Ai~~a  258 (764)
T PHA02716        191 DIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM------------DMKCVNGMSPIMTYIINI  258 (764)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHhh
Confidence            4678999999999999999999999999998885  48899999999886            45677888888864    


Q ss_pred             ---------------------------------HhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHh--cCcHHHHHH
Q 030660           84 ---------------------------------VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID--SSLTDIACF  128 (173)
Q Consensus        84 ---------------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~  128 (173)
                                                       +..|+.+++++|++.|+++ +.++..|+||||+|+.  .++.+++++
T Consensus       259 ~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVkl  337 (764)
T PHA02716        259 DNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKL  337 (764)
T ss_pred             hccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHH
Confidence                                             3457788999999999988 8889999999998764  467899999


Q ss_pred             HHhcCCCcccccCCCCCcHHHHHHH--------------hCCCcHHHHHHhcccccCC
Q 030660          129 IIDQRPESLNHRLPEELTLLHSAVM--------------RQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       129 Ll~~~~~~~~~~~~~g~t~l~~a~~--------------~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+++| ++++..|..|.||||+|+.              .++.+++++|+++|++++.
T Consensus       338 LLe~G-ADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~  394 (764)
T PHA02716        338 LHEYG-NDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA  394 (764)
T ss_pred             HHHcC-CCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence            99999 9999999999999999875              3688999999999999875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=2.8e-27  Score=189.91  Aligned_cols=148  Identities=26%  Similarity=0.243  Sum_probs=137.1

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.++++.+++.|.++|..|..|.||||+|+..|+.++++.|+++|+++            +..|..|+||||.|+..|+
T Consensus       536 g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi------------n~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        536 GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV------------HIRDANGNTALWNAISAKH  603 (823)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC------------CCcCCCCCCHHHHHHHhCC
Confidence            4678999999999999999999999999999999999999999999885            4678899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                      .+++++|+..+...   ....+.+++|.|+.+|+.+++++|+++| ++++..|.+|.||||+|+..|+.+++++|+++|+
T Consensus       604 ~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        604 HKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             HHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            99999999877644   2345789999999999999999999999 9999999999999999999999999999999999


Q ss_pred             ccCC
Q 030660          169 CLSI  172 (173)
Q Consensus       169 ~~~~  172 (173)
                      +++.
T Consensus       680 dv~~  683 (823)
T PLN03192        680 DVDK  683 (823)
T ss_pred             CCCC
Confidence            9875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=173.98  Aligned_cols=155  Identities=13%  Similarity=0.102  Sum_probs=135.7

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      .-+.+++++|+++|++++..  .+.||||.|+..++.+++++|+++|++......      .+..+..+.+++|.|...+
T Consensus       128 ~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~------~~l~~~~~~t~l~~a~~~~  199 (437)
T PHA02795        128 YVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVK------LDLYKIIQYTRGFLVDEPT  199 (437)
T ss_pred             CCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCccccccc------chhhhhhccchhHHHHhcC
Confidence            45789999999999999874  458999999999999999999999975422110      1112345779999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC--------CcH
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN--------YGE  159 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~--------~~~  159 (173)
                      ..+++++|+++|++. +.++..|.||||+|+..++.+++++|+++| ++++..+..|.||||+|+..|+        .++
T Consensus       200 ~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eI  277 (437)
T PHA02795        200 VLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKI  277 (437)
T ss_pred             HHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCcccccccHHHH
Confidence            999999999999999 889999999999999999999999999999 9999999999999999999985        589


Q ss_pred             HHHHHhcccccCC
Q 030660          160 PMIFISLNKCLSI  172 (173)
Q Consensus       160 ~~~ll~~~~~~~~  172 (173)
                      +++|+++|++++.
T Consensus       278 velLL~~gadI~~  290 (437)
T PHA02795        278 LEILLREPLSIDC  290 (437)
T ss_pred             HHHHHhCCCCCCc
Confidence            9999999998763

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=158.78  Aligned_cols=148  Identities=13%  Similarity=0.120  Sum_probs=128.5

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhC--CHHHHHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHH
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVG--DPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAV   84 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~   84 (173)
                      ..+++.++.|++.   ++..+..|.||||+|+..+  +.+++++|++.|++++            ..+ ..|.||||+|+
T Consensus        31 ~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn------------~~~~~~g~TpLh~a~   95 (209)
T PHA02859         31 KDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN------------FKTRDNNLSALHHYL   95 (209)
T ss_pred             hCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC------------ccCCCCCCCHHHHHH
Confidence            3577889999875   4677889999999999854  8999999999999864            444 57999999987


Q ss_pred             hc---CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHh--cCcHHHHHHHHhcCCCcccccCCCCCcHHHH-HHHhCCCc
Q 030660           85 RN---KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID--SSLTDIACFIIDQRPESLNHRLPEELTLLHS-AVMRQNYG  158 (173)
Q Consensus        85 ~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~  158 (173)
                      ..   +..+++++|+++|+++ +.++..|.||+|.|+.  .++.+++++|++.| ++++..|..|.||||. |+..++.+
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHHhcCCHH
Confidence            63   4689999999999999 8899999999999876  46899999999999 9999999999999995 56678999


Q ss_pred             HHHHHHhcccccCC
Q 030660          159 EPMIFISLNKCLSI  172 (173)
Q Consensus       159 ~~~~ll~~~~~~~~  172 (173)
                      ++++|+++|+++++
T Consensus       174 iv~~Ll~~Gadi~~  187 (209)
T PHA02859        174 IFDFLTSLGIDINE  187 (209)
T ss_pred             HHHHHHHcCCCCCC
Confidence            99999999999875

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=176.77  Aligned_cols=98  Identities=22%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             CCCCCcHHHHHHhc--CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcH--HHHHHHHhcCCCcccccCCCCCcHH
Q 030660           73 DDEGNTPLHNAVRN--KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT--DIACFIIDQRPESLNHRLPEELTLL  148 (173)
Q Consensus        73 ~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~g~t~l  148 (173)
                      +..|.||||.++..  +..++++.|+..|+++ +.++..|.||||+|+..++.  .+++.|++.| ++++..|..|.|||
T Consensus       184 d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g-~din~~d~~g~TpL  261 (471)
T PHA03095        184 DDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCKRSLVLPLLIAG-ISINARNRYGQTPL  261 (471)
T ss_pred             CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHHHHHHHHHcC-CCCCCcCCCCCCHH
Confidence            33444444444332  3334444444444444 44444444444444444432  2344444444 55555555555555


Q ss_pred             HHHHHhCCCcHHHHHHhcccccCC
Q 030660          149 HSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       149 ~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+|+..|+.+++++|+++|+++++
T Consensus       262 h~A~~~~~~~~v~~LL~~gad~n~  285 (471)
T PHA03095        262 HYAAVFNNPRACRRLIALGADINA  285 (471)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcc
Confidence            555555555555555555555543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.7e-26  Score=175.98  Aligned_cols=152  Identities=18%  Similarity=0.187  Sum_probs=133.5

Q ss_pred             CccchHHHHHHHHhcccchhccCCCCCcHHHHHHHhC---CHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHH
Q 030660            6 PTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVG---DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN   82 (173)
Q Consensus         6 ~~~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~   82 (173)
                      .++.+.+++++|++.|++++..+..|.||||+|+..+   +.+++++|++.|+++            +..+..|.||||+
T Consensus        22 ~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi------------n~~~~~g~TpLh~   89 (471)
T PHA03095         22 ASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV------------NAPERCGFTPLHL   89 (471)
T ss_pred             CCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC------------CCCCCCCCCHHHH
Confidence            3567889999999999999999999999999999988   999999999999885            4567789999999


Q ss_pred             HHhcC-CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH--hcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhC--CC
Q 030660           83 AVRNK-HENVVRMLVKKDRIPLGYLNNAEQTPLSIAI--DSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ--NY  157 (173)
Q Consensus        83 a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~  157 (173)
                      |+..+ ..+++++|++.|+++ +..+..|.||||.|+  ..++.+++++|+++| ++++..+..|.||||+|+..+  +.
T Consensus        90 A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g-ad~~~~d~~g~tpL~~a~~~~~~~~  167 (471)
T PHA03095         90 YLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG-ADVNALDLYGMTPLAVLLKSRNANV  167 (471)
T ss_pred             HHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCCCH
Confidence            99999 589999999999988 888889999999999  456788999999998 889999999999999888765  56


Q ss_pred             cHHHHHHhcccccC
Q 030660          158 GEPMIFISLNKCLS  171 (173)
Q Consensus       158 ~~~~~ll~~~~~~~  171 (173)
                      +++++|+++|+++.
T Consensus       168 ~iv~~Ll~~g~~~~  181 (471)
T PHA03095        168 ELLRLLIDAGADVY  181 (471)
T ss_pred             HHHHHHHHcCCCCc
Confidence            88999999988765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=1.7e-26  Score=180.60  Aligned_cols=151  Identities=13%  Similarity=0.093  Sum_probs=134.1

Q ss_pred             cchHHHHHHHHhcc-cchhcc-CCCCCcHHHHHHH--hCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHH
Q 030660            8 TMDHELLNVLRRRD-SLLRKN-NWKGETPLHIAAR--VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA   83 (173)
Q Consensus         8 ~~~~~~~~~l~~~g-~~~~~~-~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a   83 (173)
                      ..+.+++++|++.| ++++.. +..|.||||+|+.  .++.+++++|++.|+++            +.++..|.||||+|
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV------------N~kD~~G~TPLH~A  219 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV------------NLQNNHLITPLHTY  219 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHH
Confidence            47889999999999 999998 8899999999864  46789999999999885            46788999999999


Q ss_pred             HhcCC--HHHHHHHHhcCCCCCCCCCCCCCCHHHHH-------------------------------------HhcCcHH
Q 030660           84 VRNKH--ENVVRMLVKKDRIPLGYLNNAEQTPLSIA-------------------------------------IDSSLTD  124 (173)
Q Consensus        84 ~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a-------------------------------------~~~~~~~  124 (173)
                      +..|+  .+++++|++.|+++ +.++..|.||||.|                                     ++.++.+
T Consensus       220 a~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~le  298 (764)
T PHA02716        220 LITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDIS  298 (764)
T ss_pred             HHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHH
Confidence            99985  48999999999999 88999999999965                                     3456788


Q ss_pred             HHHHHHhcCCCcccccCCCCCcHHHHHHH--hCCCcHHHHHHhcccccCC
Q 030660          125 IACFIIDQRPESLNHRLPEELTLLHSAVM--RQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       125 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~ll~~~~~~~~  172 (173)
                      ++++|++.| ++++..|..|+||||+|+.  .++.+++++|+++|++++.
T Consensus       299 iVklLLe~G-AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~  347 (764)
T PHA02716        299 VVYSFLQPG-VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE  347 (764)
T ss_pred             HHHHHHhCC-CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc
Confidence            999999999 9999999999999999864  4688999999999999864

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.9e-27  Score=172.45  Aligned_cols=144  Identities=18%  Similarity=0.190  Sum_probs=135.8

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      --|+++|+.|+++|+.+|.......|||--||.-|+.++|++|+++|+++            ++.+..|.|+|++|+++|
T Consensus        94 AGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~------------~IanrhGhTcLmIa~ykG  161 (615)
T KOG0508|consen   94 AGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP------------EIANRHGHTCLMIACYKG  161 (615)
T ss_pred             cCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCC------------cccccCCCeeEEeeeccC
Confidence            35889999999999999999888889999999999999999999999996            578899999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  166 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  166 (173)
                      +.+++++|++.|+++ +.++..|+|+||.+++.|+.+++++|+.++ +.++ .|.+|.|||..|...|+.++|++|++.
T Consensus       162 h~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~g-a~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  162 HVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHG-AKID-VDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             chHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCC-ceee-ecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            999999999999999 999999999999999999999999999999 8887 677899999999999999999999963

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=176.32  Aligned_cols=95  Identities=20%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             HHHHHHHHhcccchhccCCCCCcHHHHHHHhC---CHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660           11 HELLNVLRRRDSLLRKNNWKGETPLHIAARVG---DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus        11 ~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      .+++++|++.|++++.++..|+||||+|+..+   +.+++++|+++|+++            +..+..|.||||+|+..+
T Consensus        89 ~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv------------n~~d~~g~tpL~~a~~~~  156 (489)
T PHA02798         89 LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT------------TLLDKDGFTMLQVYLQSN  156 (489)
T ss_pred             HHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc------------cccCCCCCcHHHHHHHcC
Confidence            45555555555555555555555555555543   445555555555553            345556666666666655


Q ss_pred             C---HHHHHHHHhcCCCCCCCC-CCCCCCHHHHHH
Q 030660           88 H---ENVVRMLVKKDRIPLGYL-NNAEQTPLSIAI  118 (173)
Q Consensus        88 ~---~~~~~~Ll~~~~~~~~~~-~~~g~t~l~~a~  118 (173)
                      .   .+++++|++.|+++ +.. +..|.||+|.++
T Consensus       157 ~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        157 HHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCYF  190 (489)
T ss_pred             CcchHHHHHHHHHhCCCc-ccccCcCCCcHHHHHH
Confidence            4   55666666655554 222 223444444443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.5e-26  Score=175.05  Aligned_cols=158  Identities=15%  Similarity=0.134  Sum_probs=86.3

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHh---CCHHHHHHHHhhCccc-CCCCCCCC--------------------
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARV---GDPAIVSTILKYAPAI-TNGTESEP--------------------   65 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~-~~~~~~~~--------------------   65 (173)
                      ..+++++|+++|++++.++..|+||||.|+..   ++.+++++|+++|+++ +.....+.                    
T Consensus        87 ~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         87 IKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            45677777777777777777777887776654   5677777787777775 32221111                    


Q ss_pred             ---Cccccc-cCCCCCcHHHHHHhcC----CHHHHHHHHhcCCCCC----------------------------------
Q 030660           66 ---ESLLRI-TDDEGNTPLHNAVRNK----HENVVRMLVKKDRIPL----------------------------------  103 (173)
Q Consensus        66 ---~~~~~~-~~~~g~t~l~~a~~~~----~~~~~~~Ll~~~~~~~----------------------------------  103 (173)
                         +..++. .+..|.||||.|+..+    +.+++++|++.|++..                                  
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~  246 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKY  246 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhC
Confidence               111111 2334555555544332    3445555554444321                                  


Q ss_pred             ---CCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660          104 ---GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus       104 ---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                         +.+|..|+||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|++++.
T Consensus       247 advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        247 IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence               122334555555555555555555555555 5555555555555555555555555555555543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.3e-26  Score=179.96  Aligned_cols=162  Identities=20%  Similarity=0.216  Sum_probs=117.8

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC-----------------------
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-----------------------   65 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-----------------------   65 (173)
                      -+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|++.|++++.....+.                       
T Consensus       156 ~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~  235 (682)
T PHA02876        156 DELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRS  235 (682)
T ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            468899999999999999999999999999999999999999999998865443332                       


Q ss_pred             ---------------------------CccccccCCCCCcHHHHHHhcCCH-HHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 030660           66 ---------------------------ESLLRITDDEGNTPLHNAVRNKHE-NVVRMLVKKDRIPLGYLNNAEQTPLSIA  117 (173)
Q Consensus        66 ---------------------------~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  117 (173)
                                                 +..++..+..|.||||+|+..+.. +++++|++.|+++ +..+..|.||||.|
T Consensus       236 ~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~A  314 (682)
T PHA02876        236 NINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLM  314 (682)
T ss_pred             CCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHH
Confidence                                       111233455667777777766654 4666666666655 55555566666655


Q ss_pred             HhcC-----------------------------------cHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHH
Q 030660          118 IDSS-----------------------------------LTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMI  162 (173)
Q Consensus       118 ~~~~-----------------------------------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  162 (173)
                      +..|                                   ..+++++|++.| ++++..|..|.||||+|+..|+.+++++
T Consensus       315 a~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~g-adin~~d~~G~TpLh~Aa~~~~~~iv~~  393 (682)
T PHA02876        315 AKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELG-ANVNARDYCDKTPIHYAAVRNNVVIINT  393 (682)
T ss_pred             HHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcC-CCCccCCCCCCCHHHHHHHcCCHHHHHH
Confidence            5544                                   345556666666 6677777778888888888888888888


Q ss_pred             HHhcccccCC
Q 030660          163 FISLNKCLSI  172 (173)
Q Consensus       163 ll~~~~~~~~  172 (173)
                      |+++|++++.
T Consensus       394 Ll~~gad~~~  403 (682)
T PHA02876        394 LLDYGADIEA  403 (682)
T ss_pred             HHHCCCCccc
Confidence            8888877653

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=6.4e-26  Score=170.99  Aligned_cols=159  Identities=15%  Similarity=0.174  Sum_probs=136.6

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhC--CHHHHHHHHhhCcccCCC-CCCCC--------------------
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVG--DPAIVSTILKYAPAITNG-TESEP--------------------   65 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~-~~~~~--------------------   65 (173)
                      -+.+++++|+++|++++.+|..|.||||+|+..+  ..+++++|+++|++++.. ...+.                    
T Consensus        83 g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~  162 (446)
T PHA02946         83 NNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSI  162 (446)
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhc
Confidence            4678999999999999999999999999998765  478999999999998742 22221                    


Q ss_pred             CccccccCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcC--cHHHHHHHHhcCCCcccccC
Q 030660           66 ESLLRITDDEGNTPLHNAVRNK--HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS--LTDIACFIIDQRPESLNHRL  141 (173)
Q Consensus        66 ~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~  141 (173)
                      +..++..+..|.||||.|+..+  ..+++++|++.|+++ +.+|..|.||||+|+..+  +.+++++|+. + ++++..|
T Consensus       163 gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d  239 (446)
T PHA02946        163 GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQN  239 (446)
T ss_pred             cccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCC
Confidence            4445678899999999987754  468999999999999 888999999999999875  7899999985 7 9999999


Q ss_pred             CCCCcHHHHHHHhCCC-cHHHHHHhccccc
Q 030660          142 PEELTLLHSAVMRQNY-GEPMIFISLNKCL  170 (173)
Q Consensus       142 ~~g~t~l~~a~~~~~~-~~~~~ll~~~~~~  170 (173)
                      ..|.||||+|+..++. +++++|+++|+..
T Consensus       240 ~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        240 KFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             CCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            9999999999999884 8999999998753

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=9e-26  Score=178.67  Aligned_cols=160  Identities=19%  Similarity=0.210  Sum_probs=135.3

Q ss_pred             HHHHHHHhcccchhccCCCCCcHHHHHHHhC-CHHHHHHHHhhCcccCCCCCCCC----------------------Ccc
Q 030660           12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVG-DPAIVSTILKYAPAITNGTESEP----------------------ESL   68 (173)
Q Consensus        12 ~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~----------------------~~~   68 (173)
                      +++++|++.|++++..+..|.||||+|+..| +.++++.|+..|++++.....+.                      +..
T Consensus       288 ~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad  367 (682)
T PHA02876        288 RLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN  367 (682)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC
Confidence            5778888888888888888888888888887 58888888888888765544332                      444


Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCc-HHHHHHHHhcCCCcccccCCCCCcH
Q 030660           69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL-TDIACFIIDQRPESLNHRLPEELTL  147 (173)
Q Consensus        69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~  147 (173)
                      ++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||.|+..++ ..++++|+++| ++++..|..|.||
T Consensus       368 in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-adin~~d~~G~Tp  445 (682)
T PHA02876        368 VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALCGTNPYMSVKTLIDRG-ANVNSKNKDLSTP  445 (682)
T ss_pred             CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHHcCCHHHHHHHHHhCC-CCCCcCCCCCChH
Confidence            5678889999999999999999999999999988 7788889999999987655 56789999999 9999999999999


Q ss_pred             HHHHHHhC-CCcHHHHHHhcccccCCC
Q 030660          148 LHSAVMRQ-NYGEPMIFISLNKCLSIV  173 (173)
Q Consensus       148 l~~a~~~~-~~~~~~~ll~~~~~~~~~  173 (173)
                      ||+|+..+ +.+++++|+++|++++++
T Consensus       446 Lh~Aa~~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        446 LHYACKKNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             HHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence            99999877 679999999999998763

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=4.5e-26  Score=150.95  Aligned_cols=138  Identities=14%  Similarity=0.048  Sum_probs=121.2

Q ss_pred             cccchhccCCCCCcHHHHHHHhCCH----HHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHH---HH
Q 030660           20 RDSLLRKNNWKGETPLHIAARVGDP----AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN---VV   92 (173)
Q Consensus        20 ~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~---~~   92 (173)
                      ++.+++..+..+.++||.||+.|+.    +++++|++.+...            +..+..|+||||+|+..+..+   ++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~------------~~~d~~g~t~Lh~Aa~~g~~~~~~~i   76 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL------------HRYDHHGRQCTHMVAWYDRANAVMKI   76 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh------------hccCCCCCcHHHHHHHhCccCHHHHH
Confidence            5667777888899999999999998    5566777777653            467889999999999988754   48


Q ss_pred             HHHHhcCCCCCCCCC-CCCCCHHHHHHhcCcHHHHHHHHh-cCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660           93 RMLVKKDRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIID-QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus        93 ~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      ++|+..|+++ +.++ ..|.||||+|+.+++.+++++|++ .+ ++++..+..|.||||+|+..++.+++++|+++|+++
T Consensus        77 ~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         77 ELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLG-VNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             HHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999988 7777 589999999999999999999995 67 999999999999999999999999999999999987


Q ss_pred             C
Q 030660          171 S  171 (173)
Q Consensus       171 ~  171 (173)
                      +
T Consensus       155 ~  155 (166)
T PHA02743        155 D  155 (166)
T ss_pred             C
Confidence            5

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=2.4e-26  Score=175.61  Aligned_cols=162  Identities=20%  Similarity=0.193  Sum_probs=133.9

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------   65 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------   65 (173)
                      ....++++.|+++|+++|..|..|.||||+||..++.|..+.|++.|+++...+..++                      
T Consensus       131 ~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~  210 (929)
T KOG0510|consen  131 SGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEH  210 (929)
T ss_pred             cchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccc
Confidence            3467889999999999999999999999999999999988999999999877666664                      


Q ss_pred             ----------------------------------------------------CccccccCCCCCcHHHHHHhcCCHHHHH
Q 030660           66 ----------------------------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVR   93 (173)
Q Consensus        66 ----------------------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~   93 (173)
                                                                          +.+++..|..|.||||+|+..|+.+.++
T Consensus       211 g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd  290 (929)
T KOG0510|consen  211 GYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVD  290 (929)
T ss_pred             cchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHH
Confidence                                                                3345667889999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHh-cCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660           94 MLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID-QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus        94 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      .|+..|++. +.++.++.+|||.|+.+|++++++.|++ .+...++..|-.|.||||+|+..|+.++++.|++.||..
T Consensus       291 ~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~  367 (929)
T KOG0510|consen  291 NLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF  367 (929)
T ss_pred             HHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh
Confidence            999999999 8888888899999998888888888887 444456666677777777777777777777777777654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.4e-25  Score=171.63  Aligned_cols=151  Identities=14%  Similarity=0.187  Sum_probs=135.2

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHh-----CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHH
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARV-----GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN   82 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~   82 (173)
                      ..+.+++++|+++|++++..+..|.||||.|+..     +..+++++|+++|+++            +.++..|.||||.
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi------------N~~d~~G~TpLh~  115 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI------------NKKNSDGETPLYC  115 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC------------CCCCCCcCcHHHH
Confidence            4578999999999999999999999999998864     6789999999999985            5678899999999


Q ss_pred             HHhcC---CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCc---HHHHHHHHhcCCCcccccC-CCCCcHHHHHHHh-
Q 030660           83 AVRNK---HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL---TDIACFIIDQRPESLNHRL-PEELTLLHSAVMR-  154 (173)
Q Consensus        83 a~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~-  154 (173)
                      |+..+   ..+++++|++.|+++ +..+..|.||+|.|++.++   .+++++|+++| ++++..+ ..|.||+|.++.. 
T Consensus       116 a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-adin~~~~~~~~t~Lh~~~~~~  193 (489)
T PHA02798        116 LLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG-VDINTHNNKEKYDTLHCYFKYN  193 (489)
T ss_pred             HHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC-CCcccccCcCCCcHHHHHHHhc
Confidence            99876   679999999999999 8899999999999999887   89999999999 9998875 5789999988764 


Q ss_pred             ---CCCcHHHHHHhcccccCC
Q 030660          155 ---QNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       155 ---~~~~~~~~ll~~~~~~~~  172 (173)
                         ++.+++++|+++|++++.
T Consensus       194 ~~~~~~~ivk~Li~~Ga~i~~  214 (489)
T PHA02798        194 IDRIDADILKLFVDNGFIINK  214 (489)
T ss_pred             cccCCHHHHHHHHHCCCCccc
Confidence               478999999999998753

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=165.50  Aligned_cols=150  Identities=13%  Similarity=0.052  Sum_probs=133.1

Q ss_pred             cchHHHHHHHHhcccchh------ccCCCCCcHHHHHHH--hCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcH
Q 030660            8 TMDHELLNVLRRRDSLLR------KNNWKGETPLHIAAR--VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTP   79 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~------~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~   79 (173)
                      .-..|++++|++.|++++      .++..++|+||.++.  .|+.++|++|+++|++++.              ..+.||
T Consensus        87 ~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~--------------~~~~t~  152 (437)
T PHA02795         87 ITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK--------------IECLNA  152 (437)
T ss_pred             cchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC--------------CCCCCH
Confidence            345689999999999988      778889999999998  8999999999999999632              234799


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCC-----CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHh
Q 030660           80 LHNAVRNKHENVVRMLVKKDRIPLGYLN-----NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  154 (173)
Q Consensus        80 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  154 (173)
                      +|.|+..++.+++++|+++|+...+..+     ..+.+++|.|...+..+++++|+++| ++++..|..|.||||+|+..
T Consensus       153 lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-ADIN~kD~~G~TpLh~Aa~~  231 (437)
T PHA02795        153 YFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-EDINQLDAGGRTLLYRAIYA  231 (437)
T ss_pred             HHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-CCcCcCCCCCCCHHHHHHHc
Confidence            9999999999999999999975533331     34789999999999999999999999 99999999999999999999


Q ss_pred             CCCcHHHHHHhcccccCC
Q 030660          155 QNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~  172 (173)
                      |+.+++++|+++|+++++
T Consensus       232 g~~eiVelLL~~GAdIN~  249 (437)
T PHA02795        232 GYIDLVSWLLENGANVNA  249 (437)
T ss_pred             CCHHHHHHHHHCCCCCCC
Confidence            999999999999999875

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=3e-25  Score=147.58  Aligned_cols=138  Identities=19%  Similarity=0.196  Sum_probs=117.6

Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC----HHHHHHHHhcC
Q 030660           24 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH----ENVVRMLVKKD   99 (173)
Q Consensus        24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~   99 (173)
                      ++.++..|.||||+|++.|+.++++.|+......      ..+..++..+..|.||||+|+..++    .+++++|++.|
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g   87 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGD------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG   87 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccc------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            5567889999999999999999999987542100      0011245778899999999999998    48899999999


Q ss_pred             CCCCCCCCC-CCCCHHHHHHhcCcHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660          100 RIPLGYLNN-AEQTPLSIAIDSSLTDIACFIIDQ-RPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       100 ~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      ++. +.++. .|.||||+|+..++.+++++|+.. + ++++..|.+|+|||++|+..++.+++++|++.++.
T Consensus        88 adi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g-~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         88 ADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG-IDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            988 77774 899999999999999999999975 6 89999999999999999999999999999988654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=2.4e-25  Score=170.20  Aligned_cols=153  Identities=25%  Similarity=0.309  Sum_probs=133.3

Q ss_pred             cchHHHHHHHHhcccc---------------hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCcccccc
Q 030660            8 TMDHELLNVLRRRDSL---------------LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT   72 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   72 (173)
                      .-++|+++.+++.|..               ++..|++|.||||+|++.|++++|+.|+.+|+++            +.+
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I------------~~k  302 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI------------NSK  302 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc------------ccc
Confidence            3467777777776542               4456889999999999999999999999999996            467


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCccc--ccCCCCCcHHH
Q 030660           73 DDEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN--HRLPEELTLLH  149 (173)
Q Consensus        73 ~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~t~l~  149 (173)
                      +.++.||||.|+..|+...++.|++ .+....+..|-.|.||+|.|+++|+..+++.|+++|+...+  ..|.+|.||||
T Consensus       303 n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH  382 (929)
T KOG0510|consen  303 NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALH  382 (929)
T ss_pred             CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhh
Confidence            7899999999999999999999999 66666677888999999999999999999999999933343  34899999999


Q ss_pred             HHHHhCCCcHHHHHHhcccccCC
Q 030660          150 SAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       150 ~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +|+..|+...|++|+++|+++.+
T Consensus       383 ~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  383 LAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             HHHHhccHHHHHHHHHcCCceee
Confidence            99999999999999999999854

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1e-24  Score=149.54  Aligned_cols=133  Identities=17%  Similarity=0.168  Sum_probs=118.6

Q ss_pred             chHHHHHHHHhcccchhccCC-CCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660            9 MDHELLNVLRRRDSLLRKNNW-KGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV   84 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~-~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~   84 (173)
                      .+.+++++|++.|++++.++. .|+||||+|+..   ++.+++++|+++|+++            +..+..|.||||.|+
T Consensus        64 ~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi------------n~~d~~G~TpLh~a~  131 (209)
T PHA02859         64 VNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI------------TEEDEDGKNLLHMYM  131 (209)
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC------------CCcCCCCCCHHHHHH
Confidence            367999999999999999974 799999998764   4799999999999985            567889999999987


Q ss_pred             h--cCCHHHHHHHHhcCCCCCCCCCCCCCCHHHH-HHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhC
Q 030660           85 R--NKHENVVRMLVKKDRIPLGYLNNAEQTPLSI-AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  155 (173)
Q Consensus        85 ~--~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  155 (173)
                      .  .++.+++++|++.|+++ +.++..|.||+|. ++..++.+++++|+++| ++++..|..|+|||++|...+
T Consensus       132 ~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        132 CNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKKIFDFLTSLG-IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhhh
Confidence            5  46789999999999998 8889999999995 56678999999999999 999999999999999998764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.2e-24  Score=166.56  Aligned_cols=164  Identities=15%  Similarity=0.136  Sum_probs=104.9

Q ss_pred             CccchHHHHHHHHhcccchhccCCCCCcHHHHHHHh--CCHHHHHHHHhhCcccCCCCCCC-------------------
Q 030660            6 PTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARV--GDPAIVSTILKYAPAITNGTESE-------------------   64 (173)
Q Consensus         6 ~~~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~-------------------   64 (173)
                      ..+.+.+++++|++.|+++|.. ..|.||||.++..  ++.++|++|+++|++++......                   
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHH
Confidence            3467888899999999888887 5688888765544  36888999999988876432100                   


Q ss_pred             -------CCccccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhc--CcHHHHHHHHhc
Q 030660           65 -------PESLLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS--SLTDIACFIIDQ  132 (173)
Q Consensus        65 -------~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~  132 (173)
                             .+..++.++..|.||||.|+..   +..+++++|+++|+++.+..+..|.||||.|+..  ++.+++++|+++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence                   0233445556666666665543   4456666666666665334556666666666543  456666666666


Q ss_pred             CCCcccc-cCCCCCcHHHHHHHhC----CCcHHHHHHhcccccC
Q 030660          133 RPESLNH-RLPEELTLLHSAVMRQ----NYGEPMIFISLNKCLS  171 (173)
Q Consensus       133 ~~~~~~~-~~~~g~t~l~~a~~~~----~~~~~~~ll~~~~~~~  171 (173)
                      | ++++. .+..|.||||+|+..+    +.+++++|+++|++++
T Consensus       170 G-adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn  212 (494)
T PHA02989        170 G-VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE  212 (494)
T ss_pred             C-CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc
Confidence            6 66655 4556666666665443    5666666666666654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.93  E-value=1.6e-25  Score=146.88  Aligned_cols=142  Identities=15%  Similarity=0.090  Sum_probs=114.7

Q ss_pred             cchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH---HHHHHHHhc
Q 030660           22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE---NVVRMLVKK   98 (173)
Q Consensus        22 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~---~~~~~Ll~~   98 (173)
                      ..++.+|..|.||||+|++.|+.  +..+...+.....     ....+...+..|.||||+|+..+..   +++++|++.
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~-----~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~   80 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDE-----NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW   80 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcch-----hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc
Confidence            34567788999999999999984  3333322221100     0111234678999999999999876   468899999


Q ss_pred             CCCCCCCCC-CCCCCHHHHHHhcCcHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660           99 DRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIIDQ-RPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus        99 ~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |++. +.++ ..|.||||+|+..++.+++++|+.+ + ++++..+..|.||||+|+..|+.+++++|+++|++..|
T Consensus        81 gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         81 GADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPG-VNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             CCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-CCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9988 7776 5899999999999999999999975 6 99999999999999999999999999999999998765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=3.2e-24  Score=165.31  Aligned_cols=151  Identities=16%  Similarity=0.147  Sum_probs=130.1

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCC----HHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHH-
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGD----PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN-   82 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~-   82 (173)
                      .++++++++|+++|++++.. ..|+||||+|+..++    .+++++|+++|++..          ++.++..|.||||. 
T Consensus       356 ~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~d----------IN~kd~~G~T~Lh~~  424 (672)
T PHA02730        356 MVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMA----------INHVSNNGRLCMYGL  424 (672)
T ss_pred             cCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcc----------ccccccCCCchHhHH
Confidence            37899999999999999985 789999999998874    899999999987311          24567889999984 


Q ss_pred             --HHhcC---------CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCC-CCCcHHHH
Q 030660           83 --AVRNK---------HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP-EELTLLHS  150 (173)
Q Consensus        83 --a~~~~---------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~  150 (173)
                        |...+         ..+++++|+++|++. +.+|..|.||||+|+..++.+++++|+++| ++++..+. .|.||+|+
T Consensus       425 i~a~~~n~~~~~~e~~~~~ivk~LIs~GADI-NakD~~G~TPLh~Aa~~~~~eive~LI~~G-AdIN~~d~~~g~TaL~~  502 (672)
T PHA02730        425 ILSRFNNCGYHCYETILIDVFDILSKYMDDI-DMIDNENKTLLYYAVDVNNIQFARRLLEYG-ASVNTTSRSIINTAIQK  502 (672)
T ss_pred             HHHHhccccccccchhHHHHHHHHHhcccch-hccCCCCCCHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCcCCcCHHHH
Confidence              33332         125699999999998 899999999999999999999999999999 99999996 59999999


Q ss_pred             HHHh--CCCcHHHHHHhcccccC
Q 030660          151 AVMR--QNYGEPMIFISLNKCLS  171 (173)
Q Consensus       151 a~~~--~~~~~~~~ll~~~~~~~  171 (173)
                      |+..  ++.+++++|+++|+++.
T Consensus       503 Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        503 SSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HHHhhcCcHHHHHHHHHcCCCHH
Confidence            9874  78999999999998764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=5.8e-24  Score=163.91  Aligned_cols=164  Identities=18%  Similarity=0.227  Sum_probs=131.9

Q ss_pred             ccchHHHHHHHHhcccchhccCCCCCcHHHH--HHHhCCHHHHHHHHh--------------------------------
Q 030660            7 TTMDHELLNVLRRRDSLLRKNNWKGETPLHI--AARVGDPAIVSTILK--------------------------------   52 (173)
Q Consensus         7 ~~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~--------------------------------   52 (173)
                      ..-..|++++|+++|++++.+|..|+||||+  ++..++.|++++|++                                
T Consensus       211 ~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (672)
T PHA02730        211 ESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTP  290 (672)
T ss_pred             hccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhccc
Confidence            3447899999999999999999999999995  556678999999999                                


Q ss_pred             hCcccCC--------------------CCCCC---------------------------------------------CCc
Q 030660           53 YAPAITN--------------------GTESE---------------------------------------------PES   67 (173)
Q Consensus        53 ~~~~~~~--------------------~~~~~---------------------------------------------~~~   67 (173)
                      +|.+...                    ....+                                             +++
T Consensus       291 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GA  370 (672)
T PHA02730        291 YNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGA  370 (672)
T ss_pred             CCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCC
Confidence            5655422                    00000                                             033


Q ss_pred             cccccCCCCCcHHHHHHhcCC----HHHHHHHHhcCCC-CCCCCCCCCCCHHHH---HHhcC---------cHHHHHHHH
Q 030660           68 LLRITDDEGNTPLHNAVRNKH----ENVVRMLVKKDRI-PLGYLNNAEQTPLSI---AIDSS---------LTDIACFII  130 (173)
Q Consensus        68 ~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~---a~~~~---------~~~~~~~Ll  130 (173)
                      .++.. ..|.||||+|+..+.    .+++++|+++|+. ..+.++..|.||||.   |...+         ..+++++|+
T Consensus       371 dIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI  449 (672)
T PHA02730        371 TMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS  449 (672)
T ss_pred             CCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH
Confidence            44443 689999999988775    7999999999873 237788899999984   33222         235799999


Q ss_pred             hcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          131 DQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       131 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      .+| ++++..|..|.||||+|+..++.+++++|+++||+++.
T Consensus       450 s~G-ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~  490 (672)
T PHA02730        450 KYM-DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNT  490 (672)
T ss_pred             hcc-cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCC
Confidence            999 99999999999999999999999999999999999875

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-24  Score=157.11  Aligned_cols=151  Identities=21%  Similarity=0.271  Sum_probs=134.7

Q ss_pred             ccchHHHHHHHHh-cccchhcc--------CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCC
Q 030660            7 TTMDHELLNVLRR-RDSLLRKN--------NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGN   77 (173)
Q Consensus         7 ~~~~~~~~~~l~~-~g~~~~~~--------~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~   77 (173)
                      ..-+..+++++++ .++.+...        ...|.+||-.|+--|+.++|+.|+++|++++            .....+.
T Consensus        51 RnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN------------~tT~TNS  118 (615)
T KOG0508|consen   51 RNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVN------------DTTRTNS  118 (615)
T ss_pred             hcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccc------------cccccCC
Confidence            3457789999988 45544433        4478899999999999999999999998864            4556678


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCC
Q 030660           78 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY  157 (173)
Q Consensus        78 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  157 (173)
                      |||..||.-|+.+++++|+++|+++ +..++.|.|.||+|+..|+.+++++|++.| ++++.++..|.|+||.|++.|+.
T Consensus       119 tPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~g-ADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQG-ADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhC-CCcchhcccCchHHHhhhhcccH
Confidence            9999999999999999999999999 999999999999999999999999999999 99999999999999999999999


Q ss_pred             cHHHHHHhcccccC
Q 030660          158 GEPMIFISLNKCLS  171 (173)
Q Consensus       158 ~~~~~ll~~~~~~~  171 (173)
                      +++++|+.+|+-+.
T Consensus       197 divq~Ll~~ga~i~  210 (615)
T KOG0508|consen  197 DIVQLLLKHGAKID  210 (615)
T ss_pred             HHHHHHHhCCceee
Confidence            99999999988653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=4.9e-23  Score=161.18  Aligned_cols=158  Identities=12%  Similarity=0.083  Sum_probs=120.3

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHH----HHHHHHhhCcccCCCCC---------CC----------CC
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPA----IVSTILKYAPAITNGTE---------SE----------PE   66 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~---------~~----------~~   66 (173)
                      +.+++++|++.|++++..+..|+||||+|+..|+.+    +++.|++.+...+....         .+          .+
T Consensus        47 ~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~G  126 (661)
T PHA02917         47 NVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHG  126 (661)
T ss_pred             cHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcC
Confidence            468899999999999999999999999999888743    45666655322211111         00          15


Q ss_pred             ccccccCCCCCcHHHHHH--hcCCHHHHHHHHhcCCCCCCCCC---CCC-----------CCHHHHHHh-----------
Q 030660           67 SLLRITDDEGNTPLHNAV--RNKHENVVRMLVKKDRIPLGYLN---NAE-----------QTPLSIAID-----------  119 (173)
Q Consensus        67 ~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~---~~g-----------~t~l~~a~~-----------  119 (173)
                      ..++.++..|.||||.++  ..++.+++++|+++|+++ +..+   ..|           .||||+|+.           
T Consensus       127 adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  205 (661)
T PHA02917        127 FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRA  205 (661)
T ss_pred             CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccc
Confidence            556778889999998653  477899999999999887 4332   223           599999975           


Q ss_pred             cCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCC--cHHHHHHhccccc
Q 030660          120 SSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY--GEPMIFISLNKCL  170 (173)
Q Consensus       120 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~ll~~~~~~  170 (173)
                      +++.+++++|+++| ++++..|..|.||||+|+..|+.  +++++|++ |+++
T Consensus       206 ~~~~eiv~~Li~~G-advn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        206 YVRPEVVKCLINHG-IKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             cCcHHHHHHHHHCC-CCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence            45789999999999 99999999999999999999986  69999875 7754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=1.1e-23  Score=168.48  Aligned_cols=158  Identities=22%  Similarity=0.235  Sum_probs=142.8

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Ccc
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESL   68 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~   68 (173)
                      ..+....+.+.|.+++.....|+||||+|...|+.+++..+++.++..+...+.+.                     +..
T Consensus       453 ~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~  532 (1143)
T KOG4177|consen  453 YLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN  532 (1143)
T ss_pred             HhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCc
Confidence            45667778899999999999999999999999999999999998866655444443                     666


Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660           69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  148 (173)
Q Consensus        69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  148 (173)
                      ++..+.+|.||||.|+..|+.++|++|+++|++. +.+++.|+||||.|+..|+.+|+.+|+++| +++|..+..|.|||
T Consensus       533 v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G-A~vna~d~~g~TpL  610 (1143)
T KOG4177|consen  533 VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHG-ASVNAADLDGFTPL  610 (1143)
T ss_pred             eehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcC-CCCCcccccCcchh
Confidence            7788899999999999999999999999999999 888899999999999999999999999999 99999999999999


Q ss_pred             HHHHHhCCCcHHHHHHhcccc
Q 030660          149 HSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       149 ~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      ++|+..|+.++++.++..++.
T Consensus       611 ~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  611 HIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHHhcccchhhHHHhccCc
Confidence            999999999999999988876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=6.9e-23  Score=145.89  Aligned_cols=133  Identities=16%  Similarity=0.181  Sum_probs=109.3

Q ss_pred             cchhccCCCCCcH-HHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 030660           22 SLLRKNNWKGETP-LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  100 (173)
Q Consensus        22 ~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  100 (173)
                      ..+..+|..|+|+ ||.|++.++.+++++|+++|++++....        ..+..|.||||+|+..++.+++++|+++|+
T Consensus        23 ~~~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~--------~sd~~g~TpLh~Aa~~~~~eivklLL~~GA   94 (300)
T PHA02884         23 IAIKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP--------LSENSKTNPLIYAIDCDNDDAAKLLIRYGA   94 (300)
T ss_pred             HHhhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc--------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3466677777765 5566788999999999999998753211        124689999999999999999999999999


Q ss_pred             CCCCCC-CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660          101 IPLGYL-NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  164 (173)
Q Consensus       101 ~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  164 (173)
                      ++ +.+ +..|.||||.|+..++.+++++|+..| ++++..+..|.||+|+|+..++.+++..+.
T Consensus        95 DV-N~~~~~~g~TpLh~Aa~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884         95 DV-NRYAEEAKITPLYISVLHGCLKCLEILLSYG-ADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             Cc-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            88 654 567999999999999999999999999 999999999999999999877666554443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=2e-23  Score=138.41  Aligned_cols=133  Identities=16%  Similarity=0.122  Sum_probs=121.7

Q ss_pred             ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 030660           21 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  100 (173)
Q Consensus        21 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  100 (173)
                      ...+|..|+.|.|||.||+.+|+.++|++|++.|++++            ....+..++|.+|++.|..+++++|+.+++
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~------------~lgk~resALsLAt~ggytdiV~lLL~r~v  217 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD------------ALGKYRESALSLATRGGYTDIVELLLTREV  217 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChh------------hhhhhhhhhHhHHhcCChHHHHHHHHhcCC
Confidence            34688999999999999999999999999999999963            456678899999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660          101 IPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus       101 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                      +. +..|++|-|||-+|++.++.+|++.|++.| ++++..+..|.+++.+|+..|+. +|+..++..+
T Consensus       218 dV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~  282 (296)
T KOG0502|consen  218 DV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHA  282 (296)
T ss_pred             Cc-ceeccCCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHHHhhhH-HHHHHHHHHH
Confidence            99 999999999999999999999999999999 99999999999999999999997 7777776543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=159.15  Aligned_cols=148  Identities=11%  Similarity=0.049  Sum_probs=124.6

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV   84 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~   84 (173)
                      ..-.+.++.|+..|..++.+|..|+||||+|+..   |+.++|++|++.|+++            +..+..|.||||.|+
T Consensus         9 ~~~~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v------------~~~~~~g~TpL~~Aa   76 (661)
T PHA02917          9 EVALDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP------------LHKNWRQLTPLEEYT   76 (661)
T ss_pred             HHHHHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc------------cccCCCCCCHHHHHH
Confidence            4456778888888888898899999999998655   8899999999999986            357789999999999


Q ss_pred             hcCCH----HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHH--HHhCCCc
Q 030660           85 RNKHE----NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA--VMRQNYG  158 (173)
Q Consensus        85 ~~~~~----~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a--~~~~~~~  158 (173)
                      ..|+.    +++++|++.+... +..+  ..++++.|+.+++.+++++|+++| ++++..|..|+|||+.+  +..|+.+
T Consensus        77 ~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~G-adin~~d~~g~T~L~~~~a~~~~~~e  152 (661)
T PHA02917         77 NSRHVKVNKDIAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHG-FDLSVKCENHRSVIENYVMTDDPVPE  152 (661)
T ss_pred             HcCChhHHHHHHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcC-CCCCccCCCCccHHHHHHHccCCCHH
Confidence            99984    4667888765433 3322  347788899999999999999999 99999999999999965  3578999


Q ss_pred             HHHHHHhcccccC
Q 030660          159 EPMIFISLNKCLS  171 (173)
Q Consensus       159 ~~~~ll~~~~~~~  171 (173)
                      ++++|+++|++++
T Consensus       153 ivklLi~~Ga~vn  165 (661)
T PHA02917        153 IIDLFIENGCSVL  165 (661)
T ss_pred             HHHHHHHcCCCcc
Confidence            9999999999985

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.1e-22  Score=142.55  Aligned_cols=137  Identities=13%  Similarity=0.083  Sum_probs=117.8

Q ss_pred             hHHHHHHHHhcccchhccC----CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCcccccc-CCCCCcHHHHHH
Q 030660           10 DHELLNVLRRRDSLLRKNN----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT-DDEGNTPLHNAV   84 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~~g~t~l~~a~   84 (173)
                      +.+++++|++.|++++.++    ..|.||||+|+..++.+++++|+++|++++            .. +..|.||||.|+
T Consensus        45 ~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN------------~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         45 YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN------------RYAEEAKITPLYISV  112 (300)
T ss_pred             CHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC------------cccCCCCCCHHHHHH
Confidence            6889999999999999874    589999999999999999999999999864            33 357999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660           85 RNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  164 (173)
Q Consensus        85 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  164 (173)
                      ..++.+++++|+..|+++ +.++..|.||+|.|++.++.+++..+.  + ..   .+..+.+|.+++   ++.|++++|+
T Consensus       113 ~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~--~-~~---~~~~~~~~~~~~---~n~ei~~~Li  182 (300)
T PHA02884        113 LHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMIC--D-NE---ISNFYKHPKKIL---INFDILKILV  182 (300)
T ss_pred             HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhc--C-Cc---ccccccChhhhh---ccHHHHHHHH
Confidence            999999999999999999 888999999999999988887765553  3 22   456677888875   3679999999


Q ss_pred             hccc
Q 030660          165 SLNK  168 (173)
Q Consensus       165 ~~~~  168 (173)
                      +++.
T Consensus       183 sh~v  186 (300)
T PHA02884        183 SHFI  186 (300)
T ss_pred             HHHH
Confidence            9876

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=3.9e-23  Score=145.87  Aligned_cols=142  Identities=15%  Similarity=0.155  Sum_probs=116.6

Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHHHHhhC-cccCCCCCCCCCc-------------------------cccc-cCCCC
Q 030660           24 LRKNNWKGETPLHIAARVGDPAIVSTILKYA-PAITNGTESEPES-------------------------LLRI-TDDEG   76 (173)
Q Consensus        24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~-------------------------~~~~-~~~~g   76 (173)
                      +|..|..|+|+|||++.++++++|+.||+.| ++++.....||..                         .++. -.+.|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g  340 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG  340 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence            6778999999999999999999999999987 3444444445400                         0111 23468


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660           77 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  156 (173)
Q Consensus        77 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  156 (173)
                      .|+|++|...|+.++++.|+..|++. +.+|.+|.|+|+.|+++|+.+++++|+....+++...|.+|.|+|.+|...|+
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            89999999999999999999999988 88899999999999999999999999887768888889999999999999999


Q ss_pred             CcHHHHHHhc
Q 030660          157 YGEPMIFISL  166 (173)
Q Consensus       157 ~~~~~~ll~~  166 (173)
                      .||..+|..+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            9998888754

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=6.7e-22  Score=131.02  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=106.9

Q ss_pred             HHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHH---HHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHHhcC
Q 030660           12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAI---VSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNK   87 (173)
Q Consensus        12 ~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~   87 (173)
                      ++++++.+.|..++..|..|+||||+|+..|+.+.   +++|++.|+++            +..+ ..|.||||+|+..+
T Consensus        38 ~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi------------n~~d~~~g~TpLh~A~~~g  105 (166)
T PHA02743         38 EVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI------------NARELGTGNTLLHIAASTK  105 (166)
T ss_pred             HHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC------------CCCCCCCCCcHHHHHHHhC
Confidence            56778889999999999999999999999988654   78999999885            3455 58999999999999


Q ss_pred             CHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCC
Q 030660           88 HENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL  145 (173)
Q Consensus        88 ~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  145 (173)
                      +.+++++|+. .++++ +.++..|.||+|+|+..++.+++++|++++ ++++.++..|.
T Consensus       106 ~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~  162 (166)
T PHA02743        106 NYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANG-AVCDDPLSIGL  162 (166)
T ss_pred             CHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCCc
Confidence            9999999995 68888 788999999999999999999999999999 88988887764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=3.9e-23  Score=136.99  Aligned_cols=140  Identities=19%  Similarity=0.140  Sum_probs=115.8

Q ss_pred             HHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030660           17 LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV   96 (173)
Q Consensus        17 l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   96 (173)
                      .+.+|+..|..+-.+|+|+.+++..-+.+.+..+.+.              .++.+|.+|+|||.||+..|++.++++|+
T Consensus       115 tltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--------------~VN~~De~GfTpLiWAaa~G~i~vV~fLL  180 (296)
T KOG0502|consen  115 TLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--------------KVNACDEFGFTPLIWAAAKGHIPVVQFLL  180 (296)
T ss_pred             eecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--------------cccCccccCchHhHHHHhcCchHHHHHHH
Confidence            3444444444555555555555555544444444433              35688999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660           97 KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus        97 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +.|+++ ........++|.+|++.|..+++++|+.++ .++|..|.+|-|||-+|+.-++.++++.|++.||+++.
T Consensus       181 ~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~-vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  181 NSGADP-DALGKYRESALSLATRGGYTDIVELLLTRE-VDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQ  254 (296)
T ss_pred             HcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcC-CCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccc
Confidence            999999 888888899999999999999999999999 99999999999999999999999999999999999864

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.88  E-value=6.9e-23  Score=164.01  Aligned_cols=162  Identities=21%  Similarity=0.293  Sum_probs=117.1

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------C
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------E   66 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------~   66 (173)
                      ...+.++++++.|.+++...+.|+||||.|...++..+++.+++.|++.+.....+.                      +
T Consensus       385 g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g  464 (1143)
T KOG4177|consen  385 GRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYG  464 (1143)
T ss_pred             CchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcC
Confidence            345566666666666666666666666666666666666666666665544332222                      2


Q ss_pred             ccccccCCCCCcHHHHHHhcCCHHHHHHHH---------------------------------hcCCCCCCCCCCCCCCH
Q 030660           67 SLLRITDDEGNTPLHNAVRNKHENVVRMLV---------------------------------KKDRIPLGYLNNAEQTP  113 (173)
Q Consensus        67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll---------------------------------~~~~~~~~~~~~~g~t~  113 (173)
                      ..++.....|.||||.|...|+.+++..++                                 ++|+.. +.++.+|+||
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~Tp  543 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTP  543 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccch
Confidence            222334445556666655555555554444                                 444444 6677789999


Q ss_pred             HHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       114 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ||.|+.+|+.+++++|++++ ++++..++.|+||||.|+..|+.+++.+|+++||+++.
T Consensus       544 Lh~A~~~g~v~~VkfLLe~g-Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  544 LHVAVHYGNVDLVKFLLEHG-ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             HHHHHhcCCchHHHHhhhCC-ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            99999999999999999999 99999999999999999999999999999999999975

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.4e-22  Score=148.96  Aligned_cols=144  Identities=20%  Similarity=0.214  Sum_probs=117.6

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------   65 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------   65 (173)
                      +.+.+|+++++++|++++..|..||||||.|+..|+..++++|+++|++......++.                      
T Consensus        83 d~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~  162 (527)
T KOG0505|consen   83 DDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQ  162 (527)
T ss_pred             cccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999999999998765444442                      


Q ss_pred             -------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhc
Q 030660           66 -------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS  120 (173)
Q Consensus        66 -------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  120 (173)
                                               +...+..+..|.|.||.|+.+|..++.++|+..|..+ +.+|..||||||.|+..
T Consensus       163 gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~W  241 (527)
T KOG0505|consen  163 GIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHW  241 (527)
T ss_pred             cccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHh
Confidence                                     3333444455788888888888888888888888877 77788888888888888


Q ss_pred             CcHHHHHHHHhcCCCcccccCCCCCcHHHHHHH
Q 030660          121 SLTDIACFIIDQRPESLNHRLPEELTLLHSAVM  153 (173)
Q Consensus       121 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  153 (173)
                      ++.+++++|++++ ++++.....|.||+.+|..
T Consensus       242 g~~~~~elL~~~g-a~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  242 GQEDACELLVEHG-ADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             hhHhHHHHHHHhh-cccchhhhcCCCCccchhh
Confidence            8888888888888 7888877888888877765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=4.6e-22  Score=146.31  Aligned_cols=151  Identities=23%  Similarity=0.235  Sum_probs=138.0

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+-++.|+..|+.++..+-+|.|+||-+|.-.+.+||++|+++|+++            +..|..+|||+|-|+..|+
T Consensus        51 ~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V------------n~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   51 GDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV------------NAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             ccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc------------cccccccCCcchhhccccc
Confidence            4567788999999999999999999999999999999999999999985            5788999999999999999


Q ss_pred             HHHHHHHHhcCCCCC----------------------------------------------------------CCCCCCC
Q 030660           89 ENVVRMLVKKDRIPL----------------------------------------------------------GYLNNAE  110 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~----------------------------------------------------------~~~~~~g  110 (173)
                      ..++.+|+.+|++..                                                          ......|
T Consensus       119 ~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG  198 (527)
T KOG0505|consen  119 LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARG  198 (527)
T ss_pred             HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccccc
Confidence            999999999886653                                                          2333359


Q ss_pred             CCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          111 QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       111 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      .|.+|.|+.+|..++.++|++.+ .+++..|.+|+||||.|+..|..++.++|+++|+++..
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            99999999999999999999999 99999999999999999999999999999999998754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=5.1e-21  Score=122.66  Aligned_cols=117  Identities=24%  Similarity=0.237  Sum_probs=107.0

Q ss_pred             HHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 030660           35 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  114 (173)
Q Consensus        35 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  114 (173)
                      +-+|+..+..+.|+.|++..++.           ++..|..|.||||-|+++|+.+++..|+..|+++ +.+...|+|||
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~-----------vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPL  134 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANH-----------VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPL  134 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhcccc-----------ccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccch
Confidence            56899999999999999988765           5688999999999999999999999999999999 89999999999


Q ss_pred             HHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660          115 SIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  164 (173)
Q Consensus       115 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  164 (173)
                      |.||...+.+++.+|+++| ++++.......||||+|+...+..+...+|
T Consensus       135 hSAckWnN~~va~~LLqhg-aDVnA~t~g~ltpLhlaa~~rn~r~t~~~L  183 (228)
T KOG0512|consen  135 HSACKWNNFEVAGRLLQHG-ADVNAQTKGLLTPLHLAAGNRNSRDTLELL  183 (228)
T ss_pred             hhhhcccchhHHHHHHhcc-CcccccccccchhhHHhhcccchHHHHHHH
Confidence            9999999999999999999 999999988899999999988766555444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.86  E-value=1.7e-21  Score=134.35  Aligned_cols=141  Identities=24%  Similarity=0.212  Sum_probs=119.8

Q ss_pred             HhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHh
Q 030660           18 RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK   97 (173)
Q Consensus        18 ~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   97 (173)
                      -+...+.|..|..|.+|||||++.|+..+++.|++.|+.++            ..+....||||+|+..|+.+++..|++
T Consensus        21 d~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn------------~tnmgddtplhlaaahghrdivqkll~   88 (448)
T KOG0195|consen   21 DDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVN------------STNMGDDTPLHLAAAHGHRDIVQKLLS   88 (448)
T ss_pred             cCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccc------------cccCCCCcchhhhhhcccHHHHHHHHH
Confidence            34455788889999999999999999999999999998863            556677899999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660           98 KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus        98 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ..++. +.++..|+||||+||..|.-.+.+-|+..| +.++..+.+|.||+..|--.-...+.+.--.+|.+++.
T Consensus        89 ~kadv-navnehgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   89 RKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             Hhccc-chhhccCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            99999 999999999999999999999999999999 99999999999999988443333334444456665543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.3e-20  Score=120.81  Aligned_cols=132  Identities=23%  Similarity=0.206  Sum_probs=112.7

Q ss_pred             HHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHH
Q 030660           12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV   91 (173)
Q Consensus        12 ~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~   91 (173)
                      ++-++|.+..-.+|.+|.+|.||||-|+++|+.++++.|+..|++++            .+...||||||-||...+.++
T Consensus        78 eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~------------a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   78 EVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE------------AKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc------------cccccCccchhhhhcccchhH
Confidence            34444555667899999999999999999999999999999999975            466789999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHhcCc-HHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660           92 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL-TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  156 (173)
Q Consensus        92 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  156 (173)
                      +.+|+.+|+++ +.......||||.|+...+ ...+++|+......+-..++.+.||+.+|-+.+.
T Consensus       146 a~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  146 AGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            99999999999 8888888999999998755 4567777754436777788999999999987754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.6e-20  Score=143.86  Aligned_cols=148  Identities=16%  Similarity=0.161  Sum_probs=125.8

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCC--CCcHHHHHHh
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE--GNTPLHNAVR   85 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~--g~t~l~~a~~   85 (173)
                      ..+++++++|+++|++..  .....++++.|+..++.+++++|+++|++++            .++..  +.||||.|..
T Consensus       318 ~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN------------~kD~~g~~~TpLh~A~~  383 (631)
T PHA02792        318 TVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVV------------EDDDNIINIMPLFPTLS  383 (631)
T ss_pred             CccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchh------------hhcCCCCChhHHHHHHH
Confidence            478999999999999875  2235678999999999999999999999864            34444  5699999877


Q ss_pred             cCCH---HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHH--hC-----
Q 030660           86 NKHE---NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM--RQ-----  155 (173)
Q Consensus        86 ~~~~---~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~--~~-----  155 (173)
                      ....   +++++|+++|++. +.++..|.||||.|+..++.+++++|+++| ++++..+..|.||+++|+.  .+     
T Consensus       384 n~~~~v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~~~~~~~~~i  461 (631)
T PHA02792        384 IHESDVLSILKLCKPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVILAHACIPEI  461 (631)
T ss_pred             hccHhHHHHHHHHHhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHHHhcccHHH
Confidence            6654   4688899999998 889999999999999999999999999999 9999999999999999976  22     


Q ss_pred             ---CCcHHHHHHhcccccC
Q 030660          156 ---NYGEPMIFISLNKCLS  171 (173)
Q Consensus       156 ---~~~~~~~ll~~~~~~~  171 (173)
                         ..++++.|+++|.++.
T Consensus       462 ~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        462 AELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHHHHHhcCCChh
Confidence               2567999999987753

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=1.8e-20  Score=150.96  Aligned_cols=131  Identities=14%  Similarity=0.158  Sum_probs=119.3

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.++..              ....+.++||.|+..|+
T Consensus       569 g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~--------------~~~~~~~~L~~Aa~~g~  634 (823)
T PLN03192        569 GYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASIS--------------DPHAAGDLLCTAAKRND  634 (823)
T ss_pred             ChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc--------------CcccCchHHHHHHHhCC
Confidence            4678999999999999999999999999999999999999999877542              23457789999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCC-CcHHHHHHHhC
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE-LTLLHSAVMRQ  155 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a~~~~  155 (173)
                      .+++++|+++|+++ +.+|..|.||||.|+..|+.+++++|+++| ++++..+..| .||..++....
T Consensus       635 ~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G-Adv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        635 LTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRLLIMNG-ADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHHH
Confidence            99999999999999 889999999999999999999999999999 9999999888 89998875543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.85  E-value=5.9e-20  Score=115.74  Aligned_cols=124  Identities=27%  Similarity=0.420  Sum_probs=113.5

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660           27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL  106 (173)
Q Consensus        27 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  106 (173)
                      .+..|.||||+|+..++.+++++|++.+...            ...+..|.+|+|.|+..+..+++++|+..+... +..
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~------------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~   69 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV------------NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NAR   69 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccc
Confidence            4578999999999999999999999999764            356789999999999999999999999999766 667


Q ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660          107 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  164 (173)
Q Consensus       107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  164 (173)
                      +..|.||+|.|+..++.+++++|++++ .+++..+..+.||+++|...++.+++++|+
T Consensus        70 ~~~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          70 DKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            788999999999999999999999988 888889999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.84  E-value=8.8e-20  Score=139.82  Aligned_cols=95  Identities=12%  Similarity=0.065  Sum_probs=83.6

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCC--CCHHHHHHhcCcH---HHHHHHHhcCCCcccccCCCCCcHHHH
Q 030660           76 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE--QTPLSIAIDSSLT---DIACFIIDQRPESLNHRLPEELTLLHS  150 (173)
Q Consensus        76 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~~~~g~t~l~~  150 (173)
                      ....++.|+..+..+++++|+++|+++ +.++..|  .||||.|+.....   +++++|+++| ++++..|..|.||||+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G-ADIN~kD~~G~TPLh~  416 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI-DDINKIDKHGRSILYY  416 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC-CccccccccCcchHHH
Confidence            455688899999999999999999998 7777664  6999988776554   4688889999 9999999999999999


Q ss_pred             HHHhCCCcHHHHHHhcccccCC
Q 030660          151 AVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       151 a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+..++.+++++|+++|++++.
T Consensus       417 Aa~~~n~eivelLLs~GADIN~  438 (631)
T PHA02792        417 CIESHSVSLVEWLIDNGADINI  438 (631)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCC
Confidence            9999999999999999999875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.84  E-value=2.9e-20  Score=110.95  Aligned_cols=88  Identities=19%  Similarity=0.236  Sum_probs=80.3

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcH
Q 030660           80 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGE  159 (173)
Q Consensus        80 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  159 (173)
                      ||+|+..++.+++++|++.+... +.    |.||+|+|+.+++.+++++|++++ ++++..+..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            79999999999999999988666 33    889999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHhcccccCCC
Q 030660          160 PMIFISLNKCLSIV  173 (173)
Q Consensus       160 ~~~ll~~~~~~~~~  173 (173)
                      +++|+++|++++++
T Consensus        75 ~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   75 VKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHTTT-TTSS
T ss_pred             HHHHHHcCCCCCCc
Confidence            99999999998864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.83  E-value=7.3e-20  Score=140.59  Aligned_cols=157  Identities=18%  Similarity=0.133  Sum_probs=131.1

Q ss_pred             cchHHHHHHHHhcc-cchhcc----CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCcccccc----------
Q 030660            8 TMDHELLNVLRRRD-SLLRKN----NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT----------   72 (173)
Q Consensus         8 ~~~~~~~~~l~~~g-~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~----------   72 (173)
                      +.+.++++.|++.- ..+|..    ...|+||||+|+.+.+.++|+.|++.|++++++.....-..-+++          
T Consensus       156 ~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G  235 (782)
T KOG3676|consen  156 DGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTG  235 (782)
T ss_pred             hhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcc
Confidence            34557777777643 233332    347999999999999999999999999999876653221111111          


Q ss_pred             -CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCc--ccccCCCCCcHHH
Q 030660           73 -DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES--LNHRLPEELTLLH  149 (173)
Q Consensus        73 -~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~  149 (173)
                       -..|..||..|+-.+..+++++|+++|+++ +.+|.+|+|.||..+..-..++...+++.+ ++  ....|.+|.|||.
T Consensus       236 ~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~g-a~~l~~v~N~qgLTPLt  313 (782)
T KOG3676|consen  236 YFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELG-ANALEHVRNNQGLTPLT  313 (782)
T ss_pred             eeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcC-CCccccccccCCCChHH
Confidence             135889999999999999999999999999 999999999999999998999999999999 87  8889999999999


Q ss_pred             HHHHhCCCcHHHHHHhc
Q 030660          150 SAVMRQNYGEPMIFISL  166 (173)
Q Consensus       150 ~a~~~~~~~~~~~ll~~  166 (173)
                      +|+..|+.+|.+.+++.
T Consensus       314 LAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  314 LAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHhhhHHHHHHHHHh
Confidence            99999999999999987

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=1.2e-19  Score=145.15  Aligned_cols=148  Identities=14%  Similarity=0.047  Sum_probs=118.4

Q ss_pred             cchHHHHHHHHhc--ccchhccCCCCCcHHH-HHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660            8 TMDHELLNVLRRR--DSLLRKNNWKGETPLH-IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV   84 (173)
Q Consensus         8 ~~~~~~~~~l~~~--g~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~   84 (173)
                      .-+.+.++.++++  +.++|..|..|.|||| .|+..++.++++.|++.++                .+..|.||||.|+
T Consensus        27 ~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----------------~~~~G~T~Lh~A~   90 (743)
T TIGR00870        27 RGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----------------RGAVGDTLLHAIS   90 (743)
T ss_pred             cCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----------------CCCcChHHHHHHH
Confidence            3467788889988  8899999999999999 8889999999999999884                3567999999998


Q ss_pred             hcCC---HHHHHHHHhcCCC---------CCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccC-----------
Q 030660           85 RNKH---ENVVRMLVKKDRI---------PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL-----------  141 (173)
Q Consensus        85 ~~~~---~~~~~~Ll~~~~~---------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-----------  141 (173)
                      ..+.   ..++..+...+..         ........|.||||.|+.+++.+++++|+++| ++++..+           
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~G-Adv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERG-ASVPARACGDFFVKSQGV  169 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCcCcCCchhhcCCCC
Confidence            7332   2334444443321         10112346999999999999999999999999 8887542           


Q ss_pred             ---CCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          142 ---PEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       142 ---~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                         ..|.||||.|+..|+.+++++|++.|++++.
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPADILT  203 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence               3689999999999999999999999998763

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=4.1e-19  Score=105.94  Aligned_cols=89  Identities=27%  Similarity=0.388  Sum_probs=79.3

Q ss_pred             HHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 030660           35 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  114 (173)
Q Consensus        35 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  114 (173)
                      ||+|++.|+.+++++|++.+.+.               +. |.||||+|+..|+.+++++|++.|+++ +.++..|+||+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~---------------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L   63 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI---------------NL-GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTAL   63 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT---------------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC---------------CC-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHH
Confidence            79999999999999999988653               12 889999999999999999999999988 88889999999


Q ss_pred             HHHHhcCcHHHHHHHHhcCCCcccccC
Q 030660          115 SIAIDSSLTDIACFIIDQRPESLNHRL  141 (173)
Q Consensus       115 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~  141 (173)
                      |.|+.+++.+++++|+++| ++++.+|
T Consensus        64 ~~A~~~~~~~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   64 HYAAENGNLEIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             HHHHHTTHHHHHHHHHHTT-T-TTSS-
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCCcC
Confidence            9999999999999999998 8887654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=5.3e-19  Score=117.57  Aligned_cols=113  Identities=18%  Similarity=0.279  Sum_probs=98.4

Q ss_pred             cchHHHHHHHH------hcccchhccCCCCCcHHHHHHHhCC----HHHHHHHHhhCcccCCCCCCCCCccccccCC-CC
Q 030660            8 TMDHELLNVLR------RRDSLLRKNNWKGETPLHIAARVGD----PAIVSTILKYAPAITNGTESEPESLLRITDD-EG   76 (173)
Q Consensus         8 ~~~~~~~~~l~------~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~-~g   76 (173)
                      .-+.++++.++      ..|++++.+|..|+||||+|+..|+    .+++++|++.|+++            +.++. .|
T Consensus        31 ~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi------------n~~~~~~g   98 (169)
T PHA02741         31 CGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI------------NAQEMLEG   98 (169)
T ss_pred             cCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC------------CCCCcCCC
Confidence            34667888774      3468899999999999999999998    58899999999885            34554 89


Q ss_pred             CcHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           77 NTPLHNAVRNKHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        77 ~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      .||||+|+..++.+++++|+. .+.++ +..+..|.||+|.|+..++.+++++|++.+
T Consensus        99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         99 DTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999998 47777 888999999999999999999999999876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.81  E-value=3.4e-19  Score=142.54  Aligned_cols=137  Identities=17%  Similarity=0.099  Sum_probs=110.2

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCcccc--ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660           29 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR--ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL  106 (173)
Q Consensus        29 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  106 (173)
                      ..|.||||+|+..|+.++++.|++.|++++.......-....  .....|.+|||.|+..++.+++++|++.|+++ +..
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~  204 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTA  204 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhH
Confidence            469999999999999999999999999987543211000000  11246899999999999999999999999988 888


Q ss_pred             CCCCCCHHHHHHhcC---------cHHHHHHHHhcCCCcc-------cccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660          107 NNAEQTPLSIAIDSS---------LTDIACFIIDQRPESL-------NHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus       107 ~~~g~t~l~~a~~~~---------~~~~~~~Ll~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      |..|+||+|.|+..+         ...+.++++..+ +..       +..|.+|.|||++|+..|+.+++++|++.+
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll-~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL-DKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            999999999999876         234666676655 333       557899999999999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.77  E-value=8.7e-19  Score=133.79  Aligned_cols=135  Identities=22%  Similarity=0.277  Sum_probs=123.6

Q ss_pred             cchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 030660           22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  101 (173)
Q Consensus        22 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  101 (173)
                      ...+..|..|.|.||-|+.+|+.++++.|+++-+-            ++.++..|.+|||+|++.|+.++++.++..+..
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~------------ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~  107 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL------------LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI  107 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhh------------hhhhhccCcceEEehhhcCcchHHHHHHhcccC
Confidence            34666788999999999999999999999998865            467889999999999999999999999999866


Q ss_pred             CCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          102 PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       102 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      . +.....|.||+|.|++.++.+++.+|++++ ++.-..|+.+.|++.+|++.|..++++.|++..-++
T Consensus       108 ~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~-adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~  174 (854)
T KOG0507|consen  108 L-NAVNIENETPLHLAAQHGHLEVVFYLLKKN-ADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPV  174 (854)
T ss_pred             C-CcccccCcCccchhhhhcchHHHHHHHhcC-CCccccCcccccHHHHHHHhhhhHHHHHHhhhccch
Confidence            6 888999999999999999999999999999 999999999999999999999999999999875443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=2.3e-18  Score=112.88  Aligned_cols=101  Identities=20%  Similarity=0.252  Sum_probs=88.5

Q ss_pred             hhccCCCCCcHHHHHHHhCCH---HHHHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHHhcCCHHHHHHHHhc-
Q 030660           24 LRKNNWKGETPLHIAARVGDP---AIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVKK-   98 (173)
Q Consensus        24 ~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~-   98 (173)
                      ++.+|..|+||||+|+..++.   +++++|++.|+++            +.++ ..|.||||+|+..++.+++++|+.. 
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi------------n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~  115 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI------------NGKERVFGNTPLHIAVYTQNYELATWLCNQP  115 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc------------cccCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Confidence            455788999999999999986   4688999999885            3555 4899999999999999999999985 


Q ss_pred             CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCccc
Q 030660           99 DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN  138 (173)
Q Consensus        99 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  138 (173)
                      ++++ +.++..|.||+|+|+..++.+++++|+++| ++.+
T Consensus       116 g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g-a~~~  153 (154)
T PHA02736        116 GVNM-EILNYAFKTPYYVACERHDAKMMNILRAKG-AQCK  153 (154)
T ss_pred             CCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            7777 888999999999999999999999999988 6553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=2.9e-18  Score=118.53  Aligned_cols=102  Identities=26%  Similarity=0.322  Sum_probs=96.5

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660           69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  148 (173)
Q Consensus        69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  148 (173)
                      ++.-|..|++|||+|+..|+..+++.|+..|+.. +..+.-..||||+|+..|+-++++.|++.. +++|..+..|.|||
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~k-advnavnehgntpl  104 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRK-ADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHh-cccchhhccCCCch
Confidence            4677889999999999999999999999999988 777777889999999999999999999998 99999999999999


Q ss_pred             HHHHHhCCCcHHHHHHhcccccCC
Q 030660          149 HSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       149 ~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ||||-.|+..+.+-|++.||.++|
T Consensus       105 hyacfwgydqiaedli~~ga~v~i  128 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVNI  128 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceeee
Confidence            999999999999999999998876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.74  E-value=4.8e-18  Score=129.81  Aligned_cols=148  Identities=25%  Similarity=0.275  Sum_probs=93.2

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE   89 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~   89 (173)
                      +.+++++++++-+.++..+.+|.+|||+|+..|+.++|+.++.++..            ++....+|.||||.|+..|+.
T Consensus        61 ~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~------------~na~~~e~~tplhlaaqhgh~  128 (854)
T KOG0507|consen   61 QNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI------------LNAVNIENETPLHLAAQHGHL  128 (854)
T ss_pred             chHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccC------------CCcccccCcCccchhhhhcch
Confidence            45666777777766677777777777777777777777777766633            234556677777777777777


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCc--------ccccCCCCCcHHHHHHHhCCCcHHH
Q 030660           90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES--------LNHRLPEELTLLHSAVMRQNYGEPM  161 (173)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--------~~~~~~~g~t~l~~a~~~~~~~~~~  161 (173)
                      +++.+|+.+++++ -+++..+.|++-+|++.|..++++.|++.. -.        -...+..+.+|+|+|+.+|+.++++
T Consensus       129 dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~-~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~  206 (854)
T KOG0507|consen  129 EVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKK-FPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQ  206 (854)
T ss_pred             HHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhc-cchhhcccCCCCCCCCCCcCCcchhhhcchHHHHH
Confidence            7777777777766 566666666666666666666666665431 11        1112334455666666666666666


Q ss_pred             HHHhcccccC
Q 030660          162 IFISLNKCLS  171 (173)
Q Consensus       162 ~ll~~~~~~~  171 (173)
                      .|++.|.+++
T Consensus       207 ~ll~ag~din  216 (854)
T KOG0507|consen  207 ALLEAGFDIN  216 (854)
T ss_pred             HHHhcCCCcc
Confidence            6666666554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.73  E-value=1.2e-16  Score=110.34  Aligned_cols=131  Identities=25%  Similarity=0.325  Sum_probs=120.1

Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC-----HHHHHHHHhc
Q 030660           24 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-----ENVVRMLVKK   98 (173)
Q Consensus        24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~   98 (173)
                      ....+..+.++++.++..+...++++++..+.++            +..+..|.||+|+|+..++     .+++++|+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~  133 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV------------NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA  133 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc------------ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc
Confidence            3445566899999999999999999999999885            4688999999999999999     9999999999


Q ss_pred             CC--CCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           99 DR--IPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        99 ~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      |+  ......+..|.||+|+|+..++.++++.|++.+ ++++..+..|.|+++.|+..++.++++.++..+
T Consensus       134 g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99  565777999999999999999999999999999 999999999999999999999999999999865

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=2.3e-17  Score=116.95  Aligned_cols=101  Identities=22%  Similarity=0.303  Sum_probs=85.4

Q ss_pred             cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCC--------------------------------------C
Q 030660           68 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN--------------------------------------A  109 (173)
Q Consensus        68 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~--------------------------------------~  109 (173)
                      .++..|.+|+|+||+|....+.++|..|++.|.+..+..++                                      .
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~  339 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH  339 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh
Confidence            35688999999999999999999999999988777555444                                      4


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      |.|+|++|+.+|+.++++.|+.-| +++|.+|.+|.|+|+.|+++|++||+++||...-|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacg-AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~c  398 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACG-ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSC  398 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHcc-CCCccccCCccHHHhhhhhhChHHHHHHHhccCcc
Confidence            777888888888889999999888 89999999999999999999999999999876543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=7.4e-16  Score=89.03  Aligned_cols=91  Identities=20%  Similarity=0.157  Sum_probs=76.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCc
Q 030660           79 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYG  158 (173)
Q Consensus        79 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  158 (173)
                      .+.|+..+|..+-++-.+..|-+. +.. ..|++|+|+|+-+|+.+++++|+..| ++++.+|..|-|||-.|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-n~~-~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-NEI-YGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-HHH-hCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHhhHH
Confidence            466778888888888888777555 322 26889999999999999999999888 899999999999999999999999


Q ss_pred             HHHHHHhcccccCC
Q 030660          159 EPMIFISLNKCLSI  172 (173)
Q Consensus       159 ~~~~ll~~~~~~~~  172 (173)
                      .|++|+++||+..+
T Consensus        82 cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   82 CVKLLLQNGADRTI   95 (117)
T ss_pred             HHHHHHHcCcccce
Confidence            99999999998765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=3.7e-15  Score=86.19  Aligned_cols=103  Identities=16%  Similarity=0.176  Sum_probs=90.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 030660           34 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP  113 (173)
Q Consensus        34 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  113 (173)
                      .+.|++.+|..+-|+..+..|-+++             ....|++|||+|+-.|..+++++|+..|++. +.+|++|-||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn-------------~~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITP   70 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVN-------------EIYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITP   70 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHH-------------HHhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcH
Confidence            4678999999999999998886542             2247999999999999999999999999999 8899999999


Q ss_pred             HHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 030660          114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA  151 (173)
Q Consensus       114 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  151 (173)
                      |..|+..|+.+|+++|++.| ++-.....+|.+.+.-+
T Consensus        71 LLsAvwEGH~~cVklLL~~G-Adrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNG-ADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcC-cccceeCCCchhHHhhc
Confidence            99999999999999999999 88777778887776443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=1.8e-14  Score=90.47  Aligned_cols=109  Identities=28%  Similarity=0.459  Sum_probs=97.9

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.+.+.+..+..|.+|||.|+..++.+++++|++.++..            +..+..+.+|+|.|+..+.
T Consensus        18 ~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~------------~~~~~~~~~~l~~a~~~~~   85 (126)
T cd00204          18 GHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV------------NARDKDGNTPLHLAARNGN   85 (126)
T ss_pred             CcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc------------cccCCCCCCHHHHHHHcCc
Confidence            3568999999999988899999999999999999999999999999653            3556788999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHH
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII  130 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  130 (173)
                      .+++++|+..+... +..+..+.||++.|...++.+++++|+
T Consensus        86 ~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          86 LDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999998766 677888999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.62  E-value=1.1e-15  Score=82.43  Aligned_cols=54  Identities=22%  Similarity=0.259  Sum_probs=40.4

Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  164 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  164 (173)
                      |.||+|+|++.|+.+++++|++++ .+++..|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578888888888888888888887 888888888888888888888888888875

...

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.61  E-value=4.5e-15  Score=114.68  Aligned_cols=140  Identities=21%  Similarity=0.211  Sum_probs=116.5

Q ss_pred             cchhccCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 030660           22 SLLRKNNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK   98 (173)
Q Consensus        22 ~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   98 (173)
                      .+++.+...|.|.||.|..+   ++-++++.|++..+..-....       .....+|.|+||+|+.+.+.++|.+|++.
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~-------~~eeY~GqSaLHiAIv~~~~~~V~lLl~~  206 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIY-------TSEEYYGQSALHIAIVNRDAELVRLLLAA  206 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhh-------hhHhhcCcchHHHHHHhccHHHHHHHHHc
Confidence            45666777899999999874   456899999998764311110       12346899999999999999999999999


Q ss_pred             CCCCC-----------CCC-----------CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660           99 DRIPL-----------GYL-----------NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  156 (173)
Q Consensus        99 ~~~~~-----------~~~-----------~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  156 (173)
                      |+++.           +.+           -..|..||-.|+.-++.+++++|++++ +|++..|..|.|.||..+.+-.
T Consensus       207 gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~g-Ad~~aqDS~GNTVLH~lVi~~~  285 (782)
T KOG3676|consen  207 GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHG-ADPNAQDSNGNTVLHMLVIHFV  285 (782)
T ss_pred             CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcC-CCCCccccCCChHHHHHHHHHH
Confidence            98773           110           125889999999999999999999999 9999999999999999999999


Q ss_pred             CcHHHHHHhcccc
Q 030660          157 YGEPMIFISLNKC  169 (173)
Q Consensus       157 ~~~~~~ll~~~~~  169 (173)
                      .+|..+++++|++
T Consensus       286 ~~My~~~L~~ga~  298 (782)
T KOG3676|consen  286 TEMYDLALELGAN  298 (782)
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999999998

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.60  E-value=1.8e-15  Score=120.40  Aligned_cols=151  Identities=22%  Similarity=0.262  Sum_probs=106.8

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      .-+.|.+++++.+|+++..+|+.|.+||.+|+--||..+|+.|+++.+++.+           +.|..+.|+|.+||..|
T Consensus       767 ggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~vea-----------Qsdrtkdt~lSlacsgg  835 (2131)
T KOG4369|consen  767 GGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEA-----------QSDRTKDTMLSLACSGG  835 (2131)
T ss_pred             CccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhh-----------hcccccCceEEEecCCC
Confidence            3467899999999999999999999999999999999999999999988754           44556666666666666


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccC--CCCCcHHHHHHHhCCCcHHHHHHh
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL--PEELTLLHSAVMRQNYGEPMIFIS  165 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~ll~  165 (173)
                      +.+++++|+..|+.. .-++-...||+.+|..-|..+++..|+..| ..++...  ..|-.||++|...|+-+-++.|++
T Consensus       836 r~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~G-seInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  836 RTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSG-SEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             cchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcc-cccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            666666666666655 444555566666666666666666666666 5554432  344456666666655555555555


Q ss_pred             cccccC
Q 030660          166 LNKCLS  171 (173)
Q Consensus       166 ~~~~~~  171 (173)
                      .|-+++
T Consensus       914 ~gsdiN  919 (2131)
T KOG4369|consen  914 PGSDIN  919 (2131)
T ss_pred             ccchhc
Confidence            555543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.59  E-value=1.5e-14  Score=114.28  Aligned_cols=105  Identities=23%  Similarity=0.264  Sum_probs=93.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 030660           34 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP  113 (173)
Q Consensus        34 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  113 (173)
                      .|+.|+..|+.++++.|++.|+++            +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi------------n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~Tp  151 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP------------NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTP  151 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------------CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence            488899999999999999999885            457788999999999999999999999999998 8899999999


Q ss_pred             HHHHHhcCcHHHHHHHHhc-------CCCcccccCCCCCcHHHHHH
Q 030660          114 LSIAIDSSLTDIACFIIDQ-------RPESLNHRLPEELTLLHSAV  152 (173)
Q Consensus       114 l~~a~~~~~~~~~~~Ll~~-------~~~~~~~~~~~g~t~l~~a~  152 (173)
                      ||+|+..++.+++++|+++       + ++.+..+..|.+|+..+.
T Consensus       152 Lh~A~~~g~~~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        152 LELAEENGFREVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHCCcHHHHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence            9999999999999999988       5 677777777777776554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=2.9e-14  Score=98.42  Aligned_cols=112  Identities=25%  Similarity=0.427  Sum_probs=101.8

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCC-----HHHHHHHHhhCc--ccCCCCCCCCCccccccCCCCCcHHHH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGD-----PAIVSTILKYAP--AITNGTESEPESLLRITDDEGNTPLHN   82 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~~~--~~~~~~~~~~~~~~~~~~~~g~t~l~~   82 (173)
                      +.+.+.+++..|.+++.++..|.||||+|+..++     .++++.|++.|+  +.           ....+..|.||||+
T Consensus        85 ~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~-----------~~~~~~~g~tpl~~  153 (235)
T COG0666          85 DDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV-----------NNLRDEDGNTPLHW  153 (235)
T ss_pred             cHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC-----------ccccCCCCCchhHH
Confidence            4456689999999999999999999999999999     999999999998  32           24568999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           83 AVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        83 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      |+..|..+++++|++.++.+ +..+..|.|+++.|+..++.++++.+++.+
T Consensus       154 A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         154 AALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999998 778999999999999999999999998753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.58  E-value=2.9e-15  Score=81.19  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=32.0

Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 030660           95 LVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA  151 (173)
Q Consensus        95 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  151 (173)
                      |++.+....+..|..|.||||+|+.+|+.+++++|++.+ ++++.+|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            456663333888999999999999999999999999878 99999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.57  E-value=1.8e-14  Score=113.86  Aligned_cols=87  Identities=14%  Similarity=0.063  Sum_probs=83.2

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCC
Q 030660           78 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY  157 (173)
Q Consensus        78 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  157 (173)
                      ..|+.|+..|+.+.+++|+..|+++ +.++..|.||||+|+.+++.+++++|++.| ++++..|..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcH
Confidence            3588899999999999999999998 888999999999999999999999999999 99999999999999999999999


Q ss_pred             cHHHHHHhc
Q 030660          158 GEPMIFISL  166 (173)
Q Consensus       158 ~~~~~ll~~  166 (173)
                      +++++|+++
T Consensus       162 ~iv~~Ll~~  170 (664)
T PTZ00322        162 EVVQLLSRH  170 (664)
T ss_pred             HHHHHHHhC
Confidence            999999998

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.57  E-value=4e-15  Score=80.63  Aligned_cols=55  Identities=35%  Similarity=0.524  Sum_probs=32.4

Q ss_pred             HHhcc-cchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHH
Q 030660           17 LRRRD-SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA   83 (173)
Q Consensus        17 l~~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a   83 (173)
                      |++.| .+++.+|..|.||||+|++.|+.+++++|++.|+++            +.++..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~------------~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP------------NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T------------T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC------------CCCcCCCCCHHHhC
Confidence            45666 899999999999999999999999999999999885            57889999999987

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.57  E-value=5.6e-15  Score=117.62  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=120.6

Q ss_pred             chHHHHHHHHhcccchhcc-CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------C
Q 030660            9 MDHELLNVLRRRDSLLRKN-NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------E   66 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~   66 (173)
                      .++.+|+.|+++.++++.. |+.+.|+|.+||..|+.++|+.||.+|+....+.-.++                     +
T Consensus       801 gh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~G  880 (2131)
T KOG4369|consen  801 GHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSG  880 (2131)
T ss_pred             CchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcc
Confidence            3556666666666666654 44566777777777777777777776665543332222                     1


Q ss_pred             cccc--ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCC
Q 030660           67 SLLR--ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE  144 (173)
Q Consensus        67 ~~~~--~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  144 (173)
                      .-++  .-..-|-.||..|+.+|+...+..|++.|.+.......+-+|+|.+|+..|+.+.+.+|+... +++...-..|
T Consensus       881 seInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktg  959 (2131)
T KOG4369|consen  881 SEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTG  959 (2131)
T ss_pred             cccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh-hhhhhhcccC
Confidence            1111  123457788999999999888888888888875555667889999999999999999999888 8888888889


Q ss_pred             CcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          145 LTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       145 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      .|||+-++..|..++-++|+..|||++.
T Consensus       960 ltplme~AsgGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  960 LTPLMEMASGGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             CcccchhhcCCccccchhhhhccccccc
Confidence            9999999999999999999999999864

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2.5e-14  Score=106.10  Aligned_cols=122  Identities=20%  Similarity=0.194  Sum_probs=101.4

Q ss_pred             CCcHHH---HHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660           31 GETPLH---IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        31 g~t~L~---~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      ..+||-   -|+..|.+++|+..+..-.++            .+.+..|-|+||.|+..|+.+||+||++.|++. +..|
T Consensus       547 rfnPLaLLLDaaLeGEldlVq~~i~ev~Dp------------SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~D  613 (752)
T KOG0515|consen  547 RFNPLALLLDAALEGELDLVQRIIYEVTDP------------SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAAD  613 (752)
T ss_pred             ecchHHHHHhhhhcchHHHHHHHHHhhcCC------------CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCcc
Confidence            345654   567889999999998876664            367789999999999999999999999999999 8999


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHH--HHhCCCcHHHHHHh
Q 030660          108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA--VMRQNYGEPMIFIS  165 (173)
Q Consensus       108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~ll~  165 (173)
                      .+||||||.|+..++..+++.|.+.|++-+-..-.++.||...+  .+.|+.+..++|..
T Consensus       614 SdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  614 SDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999999999999999999999554544456778998776  44678888888764

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=2.3e-14  Score=106.34  Aligned_cols=89  Identities=20%  Similarity=0.178  Sum_probs=83.1

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcH
Q 030660           80 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGE  159 (173)
Q Consensus        80 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  159 (173)
                      |.-|+..|..++|...+..-.++ ...+..|-|+||.|+..|++++++||++.| +++|..|.+|+||||.|+.+.+..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~g-anVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFG-ANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcC-CcccCccCCCCchhhhhhhcCchHH
Confidence            45588899999999999887777 677888999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHhccccc
Q 030660          160 PMIFISLNKCL  170 (173)
Q Consensus       160 ~~~ll~~~~~~  170 (173)
                      ++.|++.|+++
T Consensus       632 ckqLVe~Gaav  642 (752)
T KOG0515|consen  632 CKQLVESGAAV  642 (752)
T ss_pred             HHHHHhccceE
Confidence            99999999986

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=5.1e-14  Score=75.81  Aligned_cols=54  Identities=30%  Similarity=0.458  Sum_probs=45.6

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHH
Q 030660           76 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII  130 (173)
Q Consensus        76 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  130 (173)
                      |.||+|+|+..|+.+++++|++.+.++ +.+|..|.||+|.|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999988 888999999999999999999999986

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=7e-13  Score=91.94  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=86.9

Q ss_pred             HHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHH
Q 030660           12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV   91 (173)
Q Consensus        12 ~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~   91 (173)
                      +...-|++.-..+|.+|..|.++|.-|+..|+.++|+.|+++|++++.           .++..+.||||.|+..|+.++
T Consensus        26 ~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~-----------~qhg~~YTpLmFAALSGn~dv   94 (396)
T KOG1710|consen   26 EAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND-----------KQHGTLYTPLMFAALSGNQDV   94 (396)
T ss_pred             HHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc-----------ccccccccHHHHHHHcCCchH
Confidence            334444555556788888899999999999999999999999988764           345778899999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHh
Q 030660           92 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID  131 (173)
Q Consensus        92 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  131 (173)
                      .++|++.|+.+ ..++.-|+|+...|+..|+-+|+..+-.
T Consensus        95 crllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   95 CRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999988888 7888889999999998888888776644

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.46  E-value=1.4e-12  Score=90.55  Aligned_cols=121  Identities=17%  Similarity=0.116  Sum_probs=108.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCC
Q 030660           32 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ  111 (173)
Q Consensus        32 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  111 (173)
                      ..||.-++-.++.+-...|++.-..            ++..|..|.++|.-|++.|+.+++++|++.|++...-+...+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~Y   80 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLY   80 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccc
Confidence            4799999999999999988886433            3578999999999999999999999999999999666677899


Q ss_pred             CHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHh
Q 030660          112 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  165 (173)
Q Consensus       112 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  165 (173)
                      ||||.|+.+|+.++..+|++.| +.....|.-|+|+-..|+--|+-+.|..+=+
T Consensus        81 TpLmFAALSGn~dvcrllldaG-a~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   81 TPLMFAALSGNQDVCRLLLDAG-ARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cHHHHHHHcCCchHHHHHHhcc-CccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999999999999 9999999999999999999999988877643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.10  E-value=5.4e-11  Score=92.96  Aligned_cols=84  Identities=25%  Similarity=0.221  Sum_probs=77.2

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660           69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  148 (173)
Q Consensus        69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  148 (173)
                      .+++|.+|+++||+|+..+..+++++|+.+|.+..-.....|+||||-|..+|+.+|+-.|+++| +.+...|.+|..||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-CceEEecccCCCHH
Confidence            46899999999999999999999999999999994444456999999999999999999999999 99999999999999


Q ss_pred             HHHHH
Q 030660          149 HSAVM  153 (173)
Q Consensus       149 ~~a~~  153 (173)
                      +..++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            98876

>PF13606 Ank_3: Ankyrin repeat

Probab=99.09  E-value=1e-10  Score=54.61  Aligned_cols=29  Identities=17%  Similarity=0.047  Sum_probs=20.2

Q ss_pred             CCCcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660          143 EELTLLHSAVMRQNYGEPMIFISLNKCLS  171 (173)
Q Consensus       143 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  171 (173)
                      +|+||||+|+..|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36677777777777777777777777665

>PF13606 Ank_3: Ankyrin repeat

Probab=99.09  E-value=1.9e-10  Score=53.72  Aligned_cols=29  Identities=38%  Similarity=0.636  Sum_probs=26.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAIT   58 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~   58 (173)
                      .|+||||+||+.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999998864

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.03  E-value=2.3e-10  Score=89.56  Aligned_cols=97  Identities=20%  Similarity=0.250  Sum_probs=81.8

Q ss_pred             HHHHHHHhccc-chhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHH
Q 030660           12 ELLNVLRRRDS-LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN   90 (173)
Q Consensus        12 ~~~~~l~~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~   90 (173)
                      ++..++.+.+. ..+..|..|.|+||+++..+..++++||+++|.++..           +-...|+||||-|++.|+++
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~v-----------qD~ESG~taLHRaiyyG~id  100 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFV-----------QDEESGYTALHRAIYYGNID  100 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeee-----------ccccccchHhhHhhhhchHH
Confidence            34445544443 4677899999999999999999999999999988633           22368999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHhc
Q 030660           91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDS  120 (173)
Q Consensus        91 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  120 (173)
                      ++..|+.+|... .++|..|..||...++-
T Consensus       101 ca~lLL~~g~SL-~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  101 CASLLLSKGRSL-RIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             HHHHHHhcCCce-EEecccCCCHHHHHhhc
Confidence            999999999888 99999999999887763

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.01  E-value=2.6e-09  Score=79.38  Aligned_cols=87  Identities=14%  Similarity=0.069  Sum_probs=79.9

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcH
Q 030660           80 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGE  159 (173)
Q Consensus        80 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  159 (173)
                      ||-.++.++.+..-.|+..|+.+.......|.||||.|++.|+..-+++|.-+| +++...|..|+||+.+|-..|+-++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-ADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc-CCCCCCCCCCCcHHHHHHhcCchHH
Confidence            888899999999999999999996666678999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHhcc
Q 030660          160 PMIFISLN  167 (173)
Q Consensus       160 ~~~ll~~~  167 (173)
                      .+-|++.-
T Consensus       216 aeRl~e~~  223 (669)
T KOG0818|consen  216 AERLVEIQ  223 (669)
T ss_pred             HHHHHHHH
Confidence            98887643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.95  E-value=1.4e-09  Score=80.34  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660           28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      ..++..++.+|++.|+...++.+.-.|.+.            ..+|...+|+||.|+..|+.+++++|++........+|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~------------~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD  570 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL------------ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD  570 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc------------cccccccchhheeecccCceeHHHHHHHHHcCCCChhh
Confidence            346778899999999999999998888774            57889999999999999999999999998555558899


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660          108 NAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus       108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      ++|+|||.-|...++.+++++|-+..
T Consensus       571 Rw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  571 RWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             ccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            99999999999999999999997643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.95  E-value=7.7e-10  Score=53.03  Aligned_cols=30  Identities=17%  Similarity=0.115  Sum_probs=20.7

Q ss_pred             CCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          143 EELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       143 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +|.||||+|+..|+.+++++|+++|+++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            366777777777777777777777776654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.94  E-value=8e-09  Score=76.84  Aligned_cols=84  Identities=23%  Similarity=0.317  Sum_probs=73.7

Q ss_pred             HHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 030660           34 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP  113 (173)
Q Consensus        34 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  113 (173)
                      .||-+++.|+.+..-.|+..|++.+.           .....|.||||+|+..|...-+++|+-+|+++ ...|..|.||
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~-----------~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP  203 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANF-----------FHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTP  203 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCC-----------CCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcH
Confidence            48999999999999999999999865           33467999999999999999999999999999 8899999999


Q ss_pred             HHHHHhcCcHHHHHHH
Q 030660          114 LSIAIDSSLTDIACFI  129 (173)
Q Consensus       114 l~~a~~~~~~~~~~~L  129 (173)
                      +.+|...|+-++.+.|
T Consensus       204 ~~~AR~~gH~~laeRl  219 (669)
T KOG0818|consen  204 VDYARQGGHHELAERL  219 (669)
T ss_pred             HHHHHhcCchHHHHHH
Confidence            9999998875544433

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.92  E-value=4.6e-09  Score=79.48  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC-CCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 030660           72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS  150 (173)
Q Consensus        72 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  150 (173)
                      .+....+.||+|+..|+-+++++++++++.. ++..+..|.|+||.|+..++-.++++|.+.| +.+...|..|.||-.-
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag-asl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG-ASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc-hhheecccCCCChHHH
Confidence            3334444455555555555555555544322 1233444555555555555544555555554 4444455555555555


Q ss_pred             HHHhCCCcHHHHHHh
Q 030660          151 AVMRQNYGEPMIFIS  165 (173)
Q Consensus       151 a~~~~~~~~~~~ll~  165 (173)
                      |-..|.++++.||-+
T Consensus       974 aqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHhcCCchHHHHHhh
Confidence            555555555555443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.91  E-value=3.1e-09  Score=50.91  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=24.3

Q ss_pred             CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccC
Q 030660          109 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL  141 (173)
Q Consensus       109 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  141 (173)
                      +|.||||+|+.+++.+++++|+++| ++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCC
Confidence            4677888888888888888888777 7777665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.81  E-value=1.6e-08  Score=75.74  Aligned_cols=88  Identities=20%  Similarity=0.235  Sum_probs=71.4

Q ss_pred             cHHHHHHhcCCHH-HHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660           78 TPLHNAVRNKHEN-VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  156 (173)
Q Consensus        78 t~l~~a~~~~~~~-~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  156 (173)
                      .|+|++......+ +.+.|...........|..|.||||+|+..|+..+++.|+..+ +++..+|++|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG-ADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC-CCccccccccccHHHHHHHcCC
Confidence            5689988766654 4444444433333677888999999999999999999999999 9999999999999999999999


Q ss_pred             CcHHHHHHhc
Q 030660          157 YGEPMIFISL  166 (173)
Q Consensus       157 ~~~~~~ll~~  166 (173)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9888777644

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.80  E-value=1.9e-08  Score=76.18  Aligned_cols=89  Identities=15%  Similarity=0.008  Sum_probs=75.4

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCC---CCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660           80 LHNAVRNKHENVVRMLVKKDRIP---LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  156 (173)
Q Consensus        80 l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  156 (173)
                      |.-|........+-+|+.+|...   ...-+..|.|+||+|++.|+..+.++|+.+| +++...|.+|.|||.||-..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhccc
Confidence            55566666667788888876433   1344567899999999999999999999999 9999999999999999999999


Q ss_pred             CcHHHHHHhcccc
Q 030660          157 YGEPMIFISLNKC  169 (173)
Q Consensus       157 ~~~~~~ll~~~~~  169 (173)
                      -|++..|+.+|.-
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999864

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.79  E-value=2.9e-08  Score=75.28  Aligned_cols=83  Identities=30%  Similarity=0.478  Sum_probs=39.9

Q ss_pred             HHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 030660           36 HIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS  115 (173)
Q Consensus        36 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  115 (173)
                      |+|+..|+-++|+|++++|+.          .+++..+..|.|+||.|+..++..++.+|++.|+.. ...|..|.||-.
T Consensus       904 h~a~~tg~~eivkyildh~p~----------elld~~de~get~lhkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~e  972 (1004)
T KOG0782|consen  904 HYAAKTGNGEIVKYILDHGPS----------ELLDMADETGETALHKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQE  972 (1004)
T ss_pred             HHHHhcCChHHHHHHHhcCCH----------HHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh-eecccCCCChHH
Confidence            344444555555555555433          123334444555555555444445555555555444 344445555555


Q ss_pred             HHHhcCcHHHHHHH
Q 030660          116 IAIDSSLTDIACFI  129 (173)
Q Consensus       116 ~a~~~~~~~~~~~L  129 (173)
                      -|-+.++.+...+|
T Consensus       973 raqqa~d~dlaayl  986 (1004)
T KOG0782|consen  973 RAQQAGDPDLAAYL  986 (1004)
T ss_pred             HHHhcCCchHHHHH
Confidence            55444555544444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.77  E-value=4.9e-08  Score=76.94  Aligned_cols=126  Identities=18%  Similarity=0.279  Sum_probs=101.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      .+.--+..|+..|+...|+..++......        ..++..|.-|.++++.|..+.+.++.++|++++...       
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~--------lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------   88 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSK--------LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------   88 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccc--------cchhccChHhhhceecccccccHHHHHHHhcCcccc-------
Confidence            44556789999999999999998765521        224578889999999999999999999999876433       


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCc---------ccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPES---------LNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  171 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~---------~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  171 (173)
                       ..+|..|+..+..++++.++.+....         ....-..+.||+.+||.+.++|++++|+.+|+++.
T Consensus        89 -gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   89 -GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             -chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence             45788999999999999999765221         01123456899999999999999999999999875

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=1.3e-08  Score=75.46  Aligned_cols=95  Identities=11%  Similarity=0.055  Sum_probs=85.6

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 030660           73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV  152 (173)
Q Consensus        73 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  152 (173)
                      ...+...+.+|+..|....++.+.-.|.+. +..|.+.+|+||.|+..|+.+++++|++....+++.+|.-|+|||+-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            345666799999999999999888888888 8899999999999999999999999998766899999999999999999


Q ss_pred             HhCCCcHHHHHHhccc
Q 030660          153 MRQNYGEPMIFISLNK  168 (173)
Q Consensus       153 ~~~~~~~~~~ll~~~~  168 (173)
                      ..++.+++++|-+...
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9999999999987644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.68  E-value=1.1e-07  Score=71.35  Aligned_cols=90  Identities=27%  Similarity=0.307  Sum_probs=73.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 030660           33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT  112 (173)
Q Consensus        33 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  112 (173)
                      .|+|+++...+.+-+..++.....          ..++..|..|.||||.|+..|+...++.|+..+++. ..++..|++
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~----------~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs   90 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVS----------LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWS   90 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhh----------ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-ccccccccc
Confidence            459999988877666654443321          124578889999999999999999999999999988 899999999


Q ss_pred             HHHHHHhcCcHHHHHHHHhcC
Q 030660          113 PLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus       113 ~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      |||.|+.+|+..++..++.+.
T Consensus        91 ~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   91 PLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHcCCHHHHHHHHHHh
Confidence            999999999998887776543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=1.4e-07  Score=71.55  Aligned_cols=92  Identities=15%  Similarity=0.074  Sum_probs=78.2

Q ss_pred             HHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 030660           35 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  114 (173)
Q Consensus        35 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  114 (173)
                      |.-|+.-.++..+-.||.+|.......        ...+..|+|+||+|+..|+..+..+|+=+|++. ...|..|+|+|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~--------t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l  698 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNE--------TCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTAL  698 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhc--------cccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhh
Confidence            556667778888889999997653222        134677899999999999999999999999999 88899999999


Q ss_pred             HHHHhcCcHHHHHHHHhcCCCc
Q 030660          115 SIAIDSSLTDIACFIIDQRPES  136 (173)
Q Consensus       115 ~~a~~~~~~~~~~~Ll~~~~~~  136 (173)
                      ++|.+.+.-+|+..|+++| +.
T Consensus       699 ~yar~a~sqec~d~llq~g-cp  719 (749)
T KOG0705|consen  699 FYARQAGSQECIDVLLQYG-CP  719 (749)
T ss_pred             hhHhhcccHHHHHHHHHcC-CC
Confidence            9999999999999999998 54

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.49  E-value=7.2e-07  Score=58.87  Aligned_cols=66  Identities=21%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhC-cccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 030660           21 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK   98 (173)
Q Consensus        21 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   98 (173)
                      +.++|.+|..|||+|..|++.|..+.+.||+..| +.            +...|..+.+++.+|-..|...+++.|.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~------------vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF------------VGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc------------ccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4679999999999999999999999999999999 54            357889999999999999999999998886

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.47  E-value=3e-07  Score=73.80  Aligned_cols=90  Identities=24%  Similarity=0.257  Sum_probs=81.0

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 030660           73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV  152 (173)
Q Consensus        73 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  152 (173)
                      -..|.+++|.|+..+...++++|+..|++. +..+..|++|+|.+...|+......|++++ ++.+..+.+|.+|+++|.
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchhhHHh
Confidence            456899999999999999999999999997 999999999999999999999999999988 999999999999999998


Q ss_pred             HhCCCcHHHHHH
Q 030660          153 MRQNYGEPMIFI  164 (173)
Q Consensus       153 ~~~~~~~~~~ll  164 (173)
                      ...+.+++-++.
T Consensus       731 ~~~~~d~~~l~~  742 (785)
T KOG0521|consen  731 EAANADIVLLLR  742 (785)
T ss_pred             hhccccHHHHHh
Confidence            887777766554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.41  E-value=5.1e-07  Score=65.50  Aligned_cols=74  Identities=16%  Similarity=0.138  Sum_probs=64.4

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 030660           77 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV  152 (173)
Q Consensus        77 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  152 (173)
                      +--|-.||+.|..+.++.|++.|... +.+|.+...||.+|+-.|+.+++++|+++| +-.+.-..+|..+++=|.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenG-AiC~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENG-AICSRDTFDGDRCHYGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcC-CcccccccCcchhhhhhh
Confidence            44588899999999999999999988 999999999999999999999999999999 777766678888865444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.35  E-value=1.1e-06  Score=71.01  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=95.2

Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHhh-CcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCC
Q 030660           26 KNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPL  103 (173)
Q Consensus        26 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  103 (173)
                      ...-.|++.+|++...+..-.++.+++. |..            ....+..|...+|+ |..++.+++.+++.- +... 
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~------------~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai-  634 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG------------DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAI-  634 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccC------------chhhcccCCChhhH-hhhcCCceeEEEEeeccccc-
Confidence            3455789999999999988888888875 322            12456667777787 555666666666654 4444 


Q ss_pred             CCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCC-----cccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660          104 GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE-----SLNHRLPEELTLLHSAVMRQNYGEPMIFISL  166 (173)
Q Consensus       104 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  166 (173)
                      +++|..|+||||+|+.+|+..++..|++.+..     +++.....|.|+-.+|...|+..+..+|-+.
T Consensus       635 ~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  635 DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            88999999999999999999999999876621     3344556789999999999999988887654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.27  E-value=2e-06  Score=56.85  Aligned_cols=66  Identities=14%  Similarity=0.137  Sum_probs=57.1

Q ss_pred             cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           68 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        68 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      .++..|.+|||+++.|+..|.-+.+.+|+.+|+......+..|.+.+.+|-+.|..+++..|.+..
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            467889999999999999999999999999995555888888999999999999998888888765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.25  E-value=4e-06  Score=66.55  Aligned_cols=98  Identities=15%  Similarity=0.088  Sum_probs=79.2

Q ss_pred             cchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 030660           22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  101 (173)
Q Consensus        22 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  101 (173)
                      .++|-.|.-|.++|++|+.+.+.+++++|+++.-.              .     ..+|..|+..|..+++++++.+...
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~--------------~-----gdALL~aI~~~~v~~VE~ll~~~~~  113 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSE--------------E-----GDALLLAIAVGSVPLVELLLVHFVD  113 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCccc--------------c-----chHHHHHHHHHHHHHHHHHHhcccc
Confidence            46777788899999999999999999999998732              1     4588999999999999999986432


Q ss_pred             C---------CCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccc
Q 030660          102 P---------LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH  139 (173)
Q Consensus       102 ~---------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  139 (173)
                      .         ....-.-+.||+..||..++++|+++|+.+| +.+..
T Consensus       114 ~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg-~~i~~  159 (822)
T KOG3609|consen  114 APYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRG-HCIPI  159 (822)
T ss_pred             cchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcC-CCCCC
Confidence            2         1122235789999999999999999999999 65533

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.19  E-value=8.1e-06  Score=59.48  Aligned_cols=58  Identities=10%  Similarity=-0.001  Sum_probs=54.1

Q ss_pred             CCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660          111 QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       111 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      .--+..||+.|..+.++.|++.| .++|..|.-...||.+|+-+|+..++++|+++||-
T Consensus        37 f~elceacR~GD~d~v~~LVetg-vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG-VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC-CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            55678999999999999999988 99999999999999999999999999999999983

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.16  E-value=3.1e-06  Score=68.17  Aligned_cols=87  Identities=29%  Similarity=0.521  Sum_probs=78.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      .|.|+||.|+..+..-.++.|++.|+++            +..|..|++|+|.+...|+...+..++.+++.+ +..+..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v------------n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~  721 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV------------NALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPD  721 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc------------hhhhccCCCcchhhhhhcccchhhhhccccccc-cccCcc
Confidence            5689999999999999999999999984            678899999999999999999999999999999 888999


Q ss_pred             CCCHHHHHHhcCcHHHHHHH
Q 030660          110 EQTPLSIAIDSSLTDIACFI  129 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~L  129 (173)
                      |.+|+..|.+..+.+.+-++
T Consensus       722 ~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             CcchhhHHhhhccccHHHHH
Confidence            99999999887666655444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.07  E-value=2.3e-06  Score=69.13  Aligned_cols=100  Identities=14%  Similarity=-0.013  Sum_probs=78.1

Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHH
Q 030660           71 ITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLH  149 (173)
Q Consensus        71 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  149 (173)
                      .....|.+.+|.++..+...+++.+++- +... ...+..|.-.+|.++ .+.++..-+++......++.+|..|+||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccc
Confidence            4556789999999999999999999885 4444 455666666677644 455565555543333889999999999999


Q ss_pred             HHHHhCCCcHHHHHHhcccccCC
Q 030660          150 SAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       150 ~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +|+..|+..++..|.+.|+...+
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGA  669 (975)
T ss_pred             hHhhcCHHHHHHHHHHhcccccc
Confidence            99999999999999999988654

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.78  E-value=0.00011  Score=50.25  Aligned_cols=90  Identities=14%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhc----CCCCCCCCCCCCCCHHHHHHh--cCcHHHHHHHHhcCCCcccc---cCCCCCcH
Q 030660           77 NTPLHNAVRNKHENVVRMLVKK----DRIPLGYLNNAEQTPLSIAID--SSLTDIACFIIDQRPESLNH---RLPEELTL  147 (173)
Q Consensus        77 ~t~l~~a~~~~~~~~~~~Ll~~----~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~---~~~~g~t~  147 (173)
                      .+++..|+.++..+++.+|++.    ..+......  +.--+-++..  ..+..+++.++++|.+++|.   .-+.|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            3567777778888899888874    122212111  1112223332  34678999999999888876   45789999


Q ss_pred             HHHHHHhCCCcHHHHHHhccc
Q 030660          148 LHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus       148 l~~a~~~~~~~~~~~ll~~~~  168 (173)
                      |..|+.+++.|++..|+.+||
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCc
Confidence            999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00248 ANK ankyrin repeats

Probab=97.67  E-value=6e-05  Score=33.72  Aligned_cols=27  Identities=19%  Similarity=0.106  Sum_probs=14.7

Q ss_pred             CCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          144 ELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       144 g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      |.||+|+|+..++.++++.|+.+|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555555543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.60  E-value=0.00015  Score=32.31  Aligned_cols=28  Identities=39%  Similarity=0.654  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCccc
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAI   57 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~   57 (173)
                      .|.||+|+|+..++.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3689999999999999999999988653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.44  E-value=0.00021  Score=54.01  Aligned_cols=65  Identities=8%  Similarity=-0.050  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcCCCCC-----CCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHh
Q 030660           89 ENVVRMLVKKDRIPL-----GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  154 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~-----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  154 (173)
                      ...+++|.+.+....     ...+..-.|+||+|+.+|..+++.+|++.+ +++...|..|+||+.++.+.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccccH
Confidence            456777777654441     233445679999999999999999999999 99999999999999988743

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.27  E-value=0.00084  Score=50.91  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             HHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHh
Q 030660           44 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID  119 (173)
Q Consensus        44 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  119 (173)
                      +..+++|.+++.+.+....      ....+.-..|+||+|+..|..+++.+|++.|+++ ..+|..|.||+.++..
T Consensus       404 p~~ie~lken~lsgnf~~~------pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVT------PEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCccccccc------ccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCccccccc
Confidence            6678888888887765443      2234455778999999999999999999999888 8999999999998873

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.08  E-value=0.034  Score=37.09  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=70.5

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHH----HHHHhcCCCCCC
Q 030660           29 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV----RMLVKKDRIPLG  104 (173)
Q Consensus        29 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~----~~Ll~~~~~~~~  104 (173)
                      ...++.+-+||+..+.++|+|+=+.-..                 ..-.+.+-+|......++.    .++.++.... .
T Consensus        74 ~~~q~LFElAC~~qkydiV~WI~qnL~i-----------------~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~  135 (192)
T PF03158_consen   74 YLNQELFELACEEQKYDIVKWIGQNLHI-----------------YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-H  135 (192)
T ss_pred             hHHHHHHHHHHHHccccHHHHHhhccCC-----------------CCchhhhhhhhhccchhHHHHHHHHHHhhcccc-c
Confidence            3456778899999999999999443321                 2233446667666665442    2233321111 0


Q ss_pred             CCC--CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHh
Q 030660          105 YLN--NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  165 (173)
Q Consensus       105 ~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  165 (173)
                      ..+  .--..-+..|+..|-.+.+-..+++| .+++      .+.|..|+.+.+.+++.+|+.
T Consensus       136 ~~d~~~ll~~hl~~a~~kgll~F~letlkyg-g~~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  136 NEDPTSLLTQHLEKAAAKGLLPFVLETLKYG-GNVD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             ccCHHHHHHHHHHHHHHCCCHHHHHHHHHcC-Cccc------HHHHHHHHHhhHHHHHHHhhc
Confidence            011  11123456888889888887777887 4443      288999999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.25  E-value=0.44  Score=33.19  Aligned_cols=93  Identities=8%  Similarity=0.122  Sum_probs=63.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc--CCHHHHHHHHhcCCCCCCC---C
Q 030660           32 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN--KHENVVRMLVKKDRIPLGY---L  106 (173)
Q Consensus        32 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~~---~  106 (173)
                      .+++-+++..+..+++.+|+.........       ......  +.--+.++...  ....+++.+++.|-...+.   +
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~d-------v~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~  250 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQD-------VASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQK  250 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecch-------hhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhc
Confidence            46788888888889999999876432110       011111  22245555443  3457899999987544332   2


Q ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660          107 NNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus       107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      ...|.|.|-.|+.+++.+++.+|+++|
T Consensus       251 ~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  251 VNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             cCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            356999999999999999999999999

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.82  E-value=0.12  Score=29.41  Aligned_cols=47  Identities=23%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhc
Q 030660           78 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ  132 (173)
Q Consensus        78 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  132 (173)
                      ..+..|...|+.++++.++..+  .  .    ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~--~--~----~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN--K--P----DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh--c--c----HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4577788888888888777432  1  1    14567788888888888888764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.17  E-value=0.37  Score=27.37  Aligned_cols=48  Identities=21%  Similarity=0.309  Sum_probs=40.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 030660           32 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK   98 (173)
Q Consensus        32 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   98 (173)
                      ...+..|+..|+.|+++.+++.+..                   ...++..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-------------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-------------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-------------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4578999999999999999987622                   14579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-05
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-04
3kea_A	285	Structure Function Studies Of Vaccinia Virus Host-R		9e-04

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   +  G TPLH+AAR G   IV  +LK    +              
Sbjct: 49  EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------A 96
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D +G TPLH A R  H  +V +L+K      G   NA+    +TP  +AID+   DIA
Sbjct: 97  KDKDGYTPLHLAAREGHLEIVEVLLKA-----GADVNAQDKFGKTPFDLAIDNGNEDIA 150

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 16  VLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP---------------AITNG 60
           +L    + +   +W G TPLH+AA+ G   IV  +LKY                 A  NG
Sbjct: 32  ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNG 91
Query: 61  TESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE---- 110
                E LL+        D EG TPLH A  + H  +V +L+K      G   NA+    
Sbjct: 92  HLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK-----YGADVNAQDKFG 146
Query: 111 QTPLSIAIDSSLTDIA 126
           +T   I+ID+   D+A
Sbjct: 147 KTAFDISIDNGNEDLA 162

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   +  G TPLH+AAR G   IV  +LK A A  N            
Sbjct: 49  EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNA----------- 96
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D +G TPLH A R  H  +V +L+K      G   NA+    +TP  +AI     DIA
Sbjct: 97  KDKDGYTPLHLAAREGHLEIVEVLLKA-----GADVNAQDKFGKTPFDLAIREGHEDIA 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   +  G TPLH+AAR G   IV  +LK    +              
Sbjct: 61  EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------A 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D +G TPLH A R  H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLLKA-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G+TPLH+AA  G   +V  +L           ++P +     D +G TPLH A  N H+ 
Sbjct: 37  GKTPLHLAAENGHKEVVKLLLSQG--------ADPNA----KDSDGKTPLHLAAENGHKE 84
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           VV++L+ +   P    ++  +TPL +A ++   ++   ++ Q
Sbjct: 85  VVKLLLSQGADPNAKDSDG-KTPLHLAAENGHKEVVKLLLSQ 125

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   +  G TPLH+AA  G   IV  +LKY   +              
Sbjct: 61  EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN------------A 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D  G TPLH A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 109 QDAYGLTPLHLAADRGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +  ++  G TPLH+AA  G   IV  +LK+   +              
Sbjct: 61  EIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV------------NA 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D++G+TPLH A +  H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 109 YDNDGHTPLHLAAKYGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   ++ G TPLH+AA+ G   IV  +LKY   +              
Sbjct: 61  EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN------------A 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D  G+TPLH A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 109 DDTIGSTPLHLAADTGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +  ++  G TPLH+AA  G   IV  +LKY   +              
Sbjct: 61  EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------A 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D +G TPLH A  + H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 109 MDYQGYTPLHLAAEDGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   +  G TPLH+AAR G   IV  +LK      NG +      +  
Sbjct: 61  EIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK------NGAD------VNA 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
           +D  G TPLH A +  H  +V +L+ K+   +   +   +T   I+ID+   D+A
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 15  NVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD 74
           +VL +   ++      G TPLH+A+  G+  +V  +L++   +   T+            
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL----------- 343
Query: 75  EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID---SSLTDIACFIID 131
            G +PLH A +  H ++V +L+K    P   +++   TPL+IA      S+TD+   + D
Sbjct: 344 -GYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401
Query: 132 Q 132
           +
Sbjct: 402 E 402

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH AA  G   IV  +L           ++P +     D +G TPLH A  N H+ 
Sbjct: 37  GRTPLHYAAENGHKEIVKLLLSKG--------ADPNA----KDSDGRTPLHYAAENGHKE 84
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           +V++L+ K   P    ++  +TPL  A ++   +I   ++ +
Sbjct: 85  IVKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLSK 125

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   +  G+TPLH+AA  G   IV  +LK      NG +      +  
Sbjct: 61  EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK------NGAD------VNA 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
           TD  G TPLH A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 109 TDTYGFTPLHLAADAGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   +  G TPLH+AA  G   IV  +LKY   +              
Sbjct: 61  EIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV------------NA 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D  G+TPLH A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 109 FDMTGSTPLHLAADEGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 5   LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
           L  T  H E++ VL +  + +   +  G TPLH+AA +G   IV  +LK+   +      
Sbjct: 53  LAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV------ 106
Query: 64  EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAID 119
                    D  G+TPLH A    H  +V +L+K      G   NA+    +T   I+ID
Sbjct: 107 ------NAVDTWGDTPLHLAAIMGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISID 155
Query: 120 SSLTDIA 126
           +   D+A
Sbjct: 156 NGNEDLA 162

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 5   LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
           L  T  H E++ VL +  + +   +  G TPLH+AA +G   IV  +LK+   +      
Sbjct: 53  LAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV------ 106
Query: 64  EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAID 119
                    D  G+TPLH A    H  +V +L+K      G   NA+    +T   I+ID
Sbjct: 107 ------NAVDTWGDTPLHLAAIMGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISID 155
Query: 120 SSLTDIA 126
           +   D+A
Sbjct: 156 NGNEDLA 162

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH AA+ G   IV  +      I+ G +      +   D +G TPLH A +  H+ 
Sbjct: 37  GRTPLHYAAKEGHKEIVKLL------ISKGAD------VNAKDSDGRTPLHYAAKEGHKE 84
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           +V++L+ K    +   ++  +TPL  A      +I   +I +
Sbjct: 85  IVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH AA  G   +V  +      I+ G +      +   D +G TPLH+A  N H+ 
Sbjct: 37  GRTPLHHAAENGHKEVVKLL------ISKGAD------VNAKDSDGRTPLHHAAENGHKE 84
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           VV++L+ K    +   ++  +TPL  A ++   ++   +I +
Sbjct: 85  VVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 16  VLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE 75
           +L    + +  N++ G TPLH+AA +G   IV  +LK      NG +      +  T + 
Sbjct: 32  ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK------NGAD------VNATGNT 79
Query: 76  GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
           G TPLH A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 80  GRTPLHLAAWADHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +   +  G TPLH+AA  G   IV  +LK      NG +      +  
Sbjct: 61  EIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------NGAD------VNA 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            DD G TPLH A    H  +V +L+K      G   NA+    +T   I+I++   D+A
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISINNGNEDLA 162

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 27  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
           N+ KG TPLH+AA      IV  +LK+   +               D++G+TPLH A   
Sbjct: 43  NDRKGNTPLHLAADYDHLEIVEVLLKHGADVN------------AHDNDGSTPLHLAALF 90
Query: 87  KHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 91  GHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G   +H AAR G    + T+L++   +             I D+EGN PLH A +  H  
Sbjct: 70  GFAVIHDAARAGQLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLR 117
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
           VV  LVK     +G+ N+   T   +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH+AAR G   +V  +L            E  + +   D  G TPLH A RN H  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
           VV++L++     +   +   +TPL +A  +   ++   +++
Sbjct: 50  VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH+AA++G   IV  +LKY   +               D+ G TPLH A    H  
Sbjct: 47  GLTPLHLAAQLGHLEIVEVLLKYGADVN------------AEDNFGITPLHLAAIRGHLE 94
Query: 91  VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
           +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 95  IVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH+AAR G   +V  +L            E  + +   D  G TPLH A RN H  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
           VV++L++     +   +   +TPL +A  +   ++   +++
Sbjct: 50  VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G   +H AAR G    + T+L++   +             I D+EGN PLH A +  H  
Sbjct: 70  GNAVIHDAARAGFLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLR 117
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
           VV  LVK     +G+ N+   T   +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL +  + +  ++  G TPLH+AA  G   IV  +LK      NG +      +  
Sbjct: 61  EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK------NGAD------VNA 108
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D +G TPLH A +  +  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++ VL R  + +   +  G TPLH+AA +G   IV  +LKY   +              
Sbjct: 49  EIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV------------NA 96
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
            D  G TPL+ A    H  +V +L+K      G   NA+    +T   I+ID    D+A
Sbjct: 97  KDATGITPLYLAAYWGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDIGNEDLA 150

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G   +H AAR G    + T+L++   +             I D+EGN PLH A +  H  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLR 117
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
           VV  LVK     +G+ N+   T   +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G   +H AAR G    + T+L++   +             I D+EGN PLH A +  H  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLR 117
Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
           VV  LVK     +G+ N+   T   +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E +  L +  +L+   + +G T LH+AA+ G   +V  +L      +NG        +  
Sbjct: 58  EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL------SNGQMD-----VNC 106
Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
            DD G TP+  A   KH ++V++L+ K    +   +N E   L  A  S   DIA
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIA 160

>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function Length = 285

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           KN  + E PLH AA + D  IV  +L       +G +          DD+GNT L+ AV 
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILL------FSGLDDSQ------FDDKGNTALYYAVD 104
Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
           + +   V++ VKK+     Y     +T    A+  +   I  + + + P + +
Sbjct: 105 SGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFD 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-09
2etb_A	256	Transient receptor potential cation channel subfam	8e-13
2etb_A	256	Transient receptor potential cation channel subfam	5e-08
2etb_A	256	Transient receptor potential cation channel subfam	6e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-11
2pnn_A	273	Transient receptor potential cation channel subfa	1e-10
2pnn_A	273	Transient receptor potential cation channel subfa	3e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-09
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	8e-11
2rfa_A	232	Transient receptor potential cation channel subfa	8e-10
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.7 bits (156), Expect = 5e-13
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH+A   G  A V  + +      + T     S+L+ T+  G+T LH A  + +  
Sbjct: 78  GNTPLHLACEQGCLASVGVLTQ------SCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131

Query: 91  VVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPE 143
           +V +LV        ++           +T L +A+D    D+   ++    + +N    +
Sbjct: 132 IVELLVSLGADVNAQE-------PCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQ 183

Query: 144 ELTLLHSAVMRQN 156
             +       R +
Sbjct: 184 GYSPYQLTWGRPS 196

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 23/137 (16%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                G++ LH+A    + A+   +++      +         L   ++   TPLH AV 
Sbjct: 4   LTE-DGDSFLHLAIIHEEKALTMEVIRQV--KGDLAF------LNFQNNLQQTPLHLAVI 54

Query: 86  NKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL 141
                +   L+       G      +    TPL +A +         +         H +
Sbjct: 55  TNQPEIAEALLGA-----GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109

Query: 142 PEE-----LTLLHSAVM 153
            +       T LH A +
Sbjct: 110 LKATNYNGHTCLHLASI 126

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.9 bits (133), Expect = 7e-10
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +    G T LH+A  + +P +VS +LK    +                 +G +P      
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN------------RVTYQGYSPYQLTWG 193

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
                + + L +     L  L  +E    S   +S  T+  
Sbjct: 194 RPSTRIQQQLGQLTLENLQMLPESE-DEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.2 bits (126), Expect = 8e-09
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 27/133 (20%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           N+ G T LH+A+  G   IV  +L     ++ G +   +         G T LH AV  +
Sbjct: 114 NYNGHTCLHLASIHGYLGIVE-LL-----VSLGADVNAQ-----EPCNGRTALHLAVDLQ 162

Query: 88  HENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHR 140
           + ++V +L+       +              +P  +      T I   +     E+    
Sbjct: 163 NPDLVSLLLKCGADVNRVT--------YQGYSPYQLTWGRPSTRIQQQLGQLTLEN-LQM 213

Query: 141 LPEELTLLHSAVM 153
           LPE          
Sbjct: 214 LPESEDEESYDTE 226

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 63.7 bits (155), Expect = 8e-13
 Identities = 32/191 (16%), Positives = 72/191 (37%), Gaps = 22/191 (11%)

Query: 3   QELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAA---RVGDPAIVSTILKYAPAITN 59
           +EL   +++   N     DS   + +  G+T L  A    + G  A +  +L+     + 
Sbjct: 16  EELTGLLEYLRWNSKYLTDSAYTEGS-TGKTCLMKAVLNLQDGVNACIMPLLQID-KDSG 73

Query: 60  GTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNAE-- 110
             +    +       +G++ LH A+  +    V++LV+       +        +     
Sbjct: 74  NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCF 133

Query: 111 ---QTPLSIAIDSSLTDIACFIIDQRPE--SLNHRLPEELTLLHSAVMRQNYGE---PMI 162
              + PLS+A  +   D+  ++++   +  SL        T+LH+ VM  +       ++
Sbjct: 134 YFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV 193

Query: 163 FISLNKCLSIV 173
               +  L + 
Sbjct: 194 IHMYDGLLQMG 204

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR------ITDDEGNTPLHNAV 84
           G T LH    + D +  ++ L     + +G       L        I++ +G TPL  A 
Sbjct: 172 GNTVLHALVMIADNSPENSALVIH--MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA 229

Query: 85  RNKHENVVRMLVKKD 99
           +     + R +++++
Sbjct: 230 KEGKIEIFRHILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 20/157 (12%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK--- 87
               L      G P  ++ +L+Y     N       +        G T L  AV N    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEY--LRWNSKYLTDSAYTE--GSTGKTCLMKAVLNLQDG 57

Query: 88  HENVVRMLVK--KDRIPLGYLNNAE--------QTPLSIAIDSSLTDIACFIIDQRPESL 137
               +  L++  KD      L NA+         + L IAI+         +++     +
Sbjct: 58  VNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA-DV 116

Query: 138 NHRLPEELTLLHSAVMRQNYGE-PMIFISLNKCLSIV 173
           + R        H       +GE P+   +  K   +V
Sbjct: 117 HLRACGRFFQKHQGTC-FYFGELPLSLAACTKQWDVV 152

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.9 bits (149), Expect = 5e-12
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
           R +   G+TPLHIA   G+   V  ++        G E +      I ++   TPLH AV
Sbjct: 4   RADE-DGDTPLHIAVVQGNLPAVHRLVNLF--QQGGRELD------IYNNLRQTPLHLAV 54

Query: 85  RNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ---RPESLNHRL 141
                +VVR+LV         L+   QT   +A +         ++D        L  R 
Sbjct: 55  ITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113

Query: 142 PEELTLLHSAVMR 154
            + LT LH AV  
Sbjct: 114 YDGLTALHVAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 27/114 (23%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +   G +PL  A      ++V  +L     + +G               G++ LH+A  
Sbjct: 145 VDIKSGRSPLIHAVENNSLSMVQ-LL-----LQHGANVN------AQMYSGSSALHSASG 192

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
                +VR LV        K+            TPL +A    + DI      +
Sbjct: 193 RGLLPLVRTLVRSGADSSLKN--------CHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 26/137 (18%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAV 84
            +   G+T  H+A     P  +  +L   AP   +         L   + +G T LH AV
Sbjct: 75  LDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTLD---------LEARNYDGLTALHVAV 124

Query: 85  RNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESL 137
             + +  V++L+         D         + ++PL  A++++   +   ++      +
Sbjct: 125 NTECQETVQLLLERGADIDAVD-------IKSGRSPLIHAVENNSLSMVQLLLQHGAN-V 176

Query: 138 NHRLPEELTLLHSAVMR 154
           N ++    + LHSA  R
Sbjct: 177 NAQMYSGSSALHSASGR 193

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 27  NNWKGETPLHIAARVGDPAI-VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            + KG+T LH    +G   + +  IL     +  G            D    TPL  A+ 
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKIL-----VQLGASPT------AKDKADETPLMRAME 182

Query: 86  NKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
            ++   + +++            Y N    + L  AI  +  D+A   ++ 
Sbjct: 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 20/109 (18%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            ++ +    +H+AAR G    V   L     I  G          I +  G T LH A +
Sbjct: 16  SDD-ENMEKIHVAARKGQTDEVR-RL-----IETGVSPT------IQNRFGCTALHLACK 62

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAE--QTPLSIAIDSSLTDIACFIIDQ 132
               +  + L        G +++    Q P+ +A+ ++ TD+   +++ 
Sbjct: 63  FGCVDTAKYLASV-----GEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 26/143 (18%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            N  +G + LH A  +    +    ++      N           + D+E   PL+ +VR
Sbjct: 207 ANK-QGNSHLHWAILINWEDVAMRFVEMG-IDVN-----------MEDNEHTVPLYLSVR 253

Query: 86  NKHENVVRMLVKKDRIPLG------------YLNNAEQTPLSIAIDSSLTDIACFIIDQR 133
                + + L++K  + L                      +  A D S  ++   + ++ 
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

Query: 134 PESLNHRLPEELTLLHSAVMRQN 156
            E +   L            +  
Sbjct: 314 DE-VVRSLNTGAGGAVKRKKKAA 335

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 10/109 (9%), Positives = 32/109 (29%), Gaps = 5/109 (4%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI--TDDEGNTPLHNA 83
           ++N +   PL+++ R     +   +L+    +         +   +          +  A
Sbjct: 240 EDN-EHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297

Query: 84  VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
                + V+++L +K    +    N            +   +    +  
Sbjct: 298 ADPSKQEVLQLLQEKL-DEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP 345

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 39/144 (27%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 82
           L+     +G+ P  +     +  +                   E    +   +G T LH 
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVN------------------EIGSHVKHCKGQTALHW 144

Query: 83  AVR--NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133
            V    ++  ++++LV        KD         A++TPL  A++    +    ++D  
Sbjct: 145 CVGLGPEYLEMIKILVQLGASPTAKD--------KADETPLMRAMEFRNREALDLMMDTV 196

Query: 134 PES----LNHRLPEELTLLHSAVM 153
           P      L++   +  + LH A++
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAIL 220

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 28/129 (21%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            + W G+ P+H+A       +V                   +L+    + G  P      
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLV------------------VALVEGAKERGQMPESLLNE 120

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID--SSLTDIACFIIDQRPESLNHRLPE 143
                V  +            +   QT L   +       ++   ++         +   
Sbjct: 121 CDEREVNEIGSHVK-------HCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKA 172

Query: 144 ELTLLHSAV 152
           + T L  A+
Sbjct: 173 DETPLMRAM 181

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 7/92 (7%), Positives = 24/92 (26%), Gaps = 13/92 (14%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +       +  AA      ++  + +    +              + + G        +
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVV------------RSLNTGAGGAVKRKK 332

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
                V RM +     P+   + +     +++
Sbjct: 333 KAAPAVKRMKLAPS-APVRTRSRSRARSSAVS 363

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 23/167 (13%)

Query: 12  ELLNVLRRRDSLLR----KNNWKGETPLHIA---ARVGDPAIVSTILKYAPAITNGTESE 64
            LL  L+R    L     K+   G+T L  A      G    ++ +L  A   T+  +  
Sbjct: 31  SLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA-RKTDSLKQF 89

Query: 65  PESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNAE------Q 111
             +    +  +G T LH A+  ++  +V +LV+                          +
Sbjct: 90  VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149

Query: 112 TPLSIAIDSSLTDIACFIIDQRPES--LNHRLPEELTLLHSAVMRQN 156
            PLS+A  ++   I  F++    +   ++ R     T+LH+ V   +
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 31  GETPLHIAARVGDPAIVSTIL---KYAPAITNGTE-SEPESLLRITDDEGNTPLHNAVRN 86
           G T LH    V D  + +T      Y   +  G +      L  IT+ +G TPL  A  +
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243

Query: 87  KHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
               V+  +++++          E      A
Sbjct: 244 GKIGVLAYILQRE--------IHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 24/108 (22%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
           R   + GE PL +AA     AIV  +L+ +    +         +   D  GNT LH  V
Sbjct: 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD---------ISARDSVGNTVLHALV 192

Query: 85  RNKHENVVRML-----------VKKDRIPLGYLNNAE----QTPLSIA 117
                 V               +     P   L         TPL++A
Sbjct: 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 21/161 (13%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAV-- 84
                  +  A    +   + ++L +   +    T+SE +       + G T L  A+  
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKD-----PETGKTCLLKAMLN 64

Query: 85  -RNKHENVVRMLVKK--DRIPLGYLNNAE--------QTPLSIAIDSSLTDIACFIIDQR 133
             N   + + +L+        L    NA         QT L IAI+     +   +++  
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 134 PESLNHRLPEELTLLHSAVMRQNYGE-PMIFISLNKCLSIV 173
              +      +            +GE P+   +    L+IV
Sbjct: 125 A-DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 20/76 (26%)

Query: 15  NVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD 74
            +          N  KG TPL +AA  G   +++ IL+                    + 
Sbjct: 218 KLHPTLKLEEITNR-KGLTPLALAASSGKIGVLAYILQ-------------------REI 257

Query: 75  EGNTPLHNAVRNKHEN 90
                 H A  + H +
Sbjct: 258 HEPECRHAAAHHHHHH 273

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 20/119 (16%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +    GET LHIAA   +      +++ AP +     +           EG T LH AV 
Sbjct: 33  RGA-MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS-------ELYEGQTALHIAVI 84

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAE-----QTPLSIAIDSSLTDIACFIIDQ 132
           N++ N+VR L+        +    + +          + PLS A      +I   +I+ 
Sbjct: 85  NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.6 bits (140), Expect = 8e-11
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 27/142 (19%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
            E+PL +AA+  D   +S +L        G E      +      G T LH A    +  
Sbjct: 3   WESPLLLAAKENDVQALSKLL-----KFEGCE------VHQRGAMGETALHIAALYDNLE 51

Query: 91  VVRMLVKKD-RIPLGYLN---NAEQTPLSIAIDSSLTDIACFIIDQ------------RP 134
              +L++    +    +       QT L IA+ +   ++   ++ +              
Sbjct: 52  AAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFH 111

Query: 135 ESLNHRLPEELTLLHSAVMRQN 156
              ++ +      L  A    +
Sbjct: 112 YRPHNLIYYGEHPLSFAACVGS 133

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.9 bits (133), Expect = 8e-10
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           GE PL  AA VG   IV  +L     I +G +      +R  D  GNT LH  +   ++ 
Sbjct: 121 GEHPLSFAACVGSEEIVR-LL-----IEHGAD------IRAQDSLGNTVLHILILQPNKT 168

Query: 91  VVRMLVK---------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133
               +             +      NN   TP  +A       +   ++ +R
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +++  G T LHI     +      +      ++       +SL  + +++G TP   A  
Sbjct: 150 QDS-LGNTVLHILILQPNKTFACQMYNLL--LSYDGGDHLKSLELVPNNQGLTPFKLAGV 206

Query: 86  NKHENVVRMLVKK 98
             +  + + L++K
Sbjct: 207 EGNIVMFQHLMQK 219

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.4 bits (145), Expect = 2e-11
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+    + PLH AA VG   ++  +     +  N             D +G TPL +A+ 
Sbjct: 136 KDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVN-----------WQDKQGWTPLFHALA 183

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID 119
             H +   +LV+K       ++N       +A++
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.5 bits (140), Expect = 8e-11
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
              PLH A    +   V  +L      +  +           D +G  PLH +V  +   
Sbjct: 2   SNYPLHQACMENEFFKVQELL-----HSKPSLLL------QKDQDGRIPLHWSVSFQAHE 50

Query: 91  VVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES-LNHRLPEELTL 147
           +   L+ K  +     Y +++  TP  IA      ++   + D+  +  LN    + +T 
Sbjct: 51  ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110

Query: 148 LHSAV 152
           LH AV
Sbjct: 111 LHLAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.8 bits (133), Expect = 7e-10
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+   G  PLH +       I S +L     +               DD G TP H A  
Sbjct: 32  KDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY---------PDDSGWTPFHIACS 81

Query: 86  NKHENVVRMLVKKDR-IPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             +  VV+ L  +     L  + N   T L +A+     +++ F+I+ 
Sbjct: 82  VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 28/137 (20%)

Query: 31  GETPLHIAARVGDPAIVST-ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
           G TP HIA  VG+  +V +   +      N              ++G T LH AV  K  
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLN-----------KITNQGVTCLHLAVGKKWF 120

Query: 90  NVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP 142
            V + L+        KD           Q PL  A       +   +      ++N +  
Sbjct: 121 EVSQFLIENGASVRIKD--------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

Query: 143 EELTLLHSAVMRQNYGE 159
           +  T L  A+  + +G+
Sbjct: 173 QGWTPLFHAL-AEGHGD 188

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.9 bits (97), Expect = 7e-05
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 15/72 (20%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           ++   G TPL  A   G       +++   A  +           + D++G      A+ 
Sbjct: 170 QDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAEYD-----------LVDNKGAKAEDVAL- 216

Query: 86  NKHENVVRMLVK 97
             +E V +  + 
Sbjct: 217 --NEQVKKFFLN 226

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 26  KNNWKGETPLHIAA---RVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 82
           +    G+T L  A      G    +  +L  A    N  E        +    G T LH 
Sbjct: 41  REPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV-YYRGQTALHI 99

Query: 83  AVRNKHENVVRMLVK-------KDRIPLGYLNNAE------QTPLSIAIDSSLTDIACFI 129
           A+  + ++ V +LV+       + R       +        + PLS+A  ++   I  ++
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 130 IDQRPESLNHRLPEEL--TLLHSAVMRQNYGEPM 161
            +   +  + R  +    T+LH+ V   +     
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTREN 193

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 24/117 (20%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           GE PL +AA    P IV  + +      +         LR  D  GNT LH  V      
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQAD---------LRRQDSRGNTVLHALVAIADNT 190

Query: 91  ---------VVRMLVKKD------RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
                    +  +L+ K             LNN   +PL +A  +    I   II +
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 31  GETPLHIAARVGD---PAIVSTILKYAPAITNGTE-SEPESLLRITDDEGNTPLHNAVRN 86
           G T LH    + D            Y   +    +     +L  + +++G +PL  A + 
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 87  KHENVVRMLVKKD 99
               + + +++++
Sbjct: 236 GKIGIFQHIIRRE 248

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 23/118 (19%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNG---TESEPESLLRITDDEGNTPLHNAVRNK 87
               L      G P  +  +L +   +T+    T+ E           G T L  A+ N 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSF--LLTHKKRLTDEEFRE-----PSTGKTCLPKALLNL 57

Query: 88  ---HENVVRMLVK--KDRIPLGYLNNAE--------QTPLSIAIDSSLTDIACFIIDQ 132
                + + +L+   +    +    N+         QT L IAI+         ++++
Sbjct: 58  SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 3e-11
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +N  G   L  A    D + V  I      + +G +        +  + G TPL  AV 
Sbjct: 178 CDN-MGRNALIHALLSSDDSDVEAITHLL--LDHGADVN------VRGERGKTPLILAVE 228

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
            KH  +V+ L++++ I +   ++  +T L +A++  L  IA  +  +
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 22/143 (15%), Positives = 38/143 (26%), Gaps = 36/143 (25%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +    G TPLH A ++    IV  +L     + +G +        +    G TP   A  
Sbjct: 34  QEEEGGWTPLHNAVQMSREDIVE-LL-----LRHGADPV------LRKKNGATPFLLAAI 81

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII-------- 130
                ++++ +       + D            T    A          F+         
Sbjct: 82  AGSVKLLKLFLSKGADVNECD--------FYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133

Query: 131 -DQRPESLNHRLPEELTLLHSAV 152
             +  E          T L  A 
Sbjct: 134 RRKTKEDQERLRKGGATALMDAA 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 5e-09
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 28/148 (18%)

Query: 15  NVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD 74
           N+ R+      +    G T L  AA  G   ++  +L    A  N             D+
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-----------ACDN 180

Query: 75  EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL----------NNAEQTPLSIAIDSSLTD 124
            G   L +A+ +  ++ V  +          L              +TPL +A++     
Sbjct: 181 MGRNALIHALLSSDDSDVEAITH-------LLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 125 IACFIIDQRPESLNHRLPEELTLLHSAV 152
           +   +++Q    +N    +  T L  AV
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.5 bits (127), Expect = 7e-09
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG----TESEPESLLRITDDEGNTPLH 81
            + + G T    AA  G    +   L        G       + +         G T L 
Sbjct: 101 CDFY-GFTAFMEAAVYGKVKAL-KFL-----YKRGANVNLRRKTKEDQERLRKGGATALM 153

Query: 82  NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI----DSSLTDIACFIIDQ 132
           +A    H  V+++L+ +    +   +N  +  L  A+    DS +  I   ++D 
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
             +    L  A +  D  +V   L     +  G     +      ++ G TPLHNAV+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLV-QQL-----LEGGANVNFQ-----EEEGGWTPLHNAVQMS 50

Query: 88  HENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHR 140
            E++V +L+        +             TP  +A  +    +    + +  + +N  
Sbjct: 51  REDIVELLLRHGADPVLRK--------KNGATPFLLAAIAGSVKLLKLFLSKGAD-VNEC 101

Query: 141 LPEELTLLHSAVMR 154
                T    A + 
Sbjct: 102 DFYGFTAFMEAAVY 115

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +     + PLH AA+ G+ + +   L     +               D  G+T L+ A  
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN------------GLDKAGSTALYWACH 115

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             H+++V ML  +  I L   N    T L  A      DI   ++ +
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 14/92 (15%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +N   G+T LH AA  G   IV  +L    A T+           + + E       A  
Sbjct: 136 QNKL-GDTALHAAAWKGYADIVQLLLAKG-ARTD-----------LRNIEKKLAFDMATN 182

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
               ++++     D +     N  +      +
Sbjct: 183 AACASLLKKKQGTDAVRT-LSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 17/140 (12%)

Query: 31  GETPLHIAARVGDPAIVSTILK------------YAP---AITNG-TESEPESLLRITDD 74
           G+  +  A    +P     +                      + G T   P + +    +
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE 71

Query: 75  EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP 134
             + PLH A +  + + +R  +   R+ +  L+ A  T L  A      DI   +  Q  
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPN 130

Query: 135 ESLNHRLPEELTLLHSAVMR 154
             LN +     T LH+A  +
Sbjct: 131 IELNQQNKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 5/63 (7%), Positives = 17/63 (26%), Gaps = 13/63 (20%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +N  + +    +A      +++          T            +++ E      ++  
Sbjct: 169 RNI-EKKLAFDMATNAACASLLKKKQGTDAVRT------------LSNAEDYLDDEDSDL 215

Query: 86  NKH 88
             H
Sbjct: 216 EHH 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.0 bits (144), Expect = 5e-11
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                G TPLHIAA+     +  ++L+Y     N               +G TPLH A +
Sbjct: 208 PAWN-GYTPLHIAAKQNQVEVARSLLQYG-GSAN-----------AESVQGVTPLHLAAQ 254

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL 145
             H  +V +L+ K        N +  TPL +        +A  +I      ++       
Sbjct: 255 EGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGY 312

Query: 146 TLLHSAV 152
           T LH A 
Sbjct: 313 TPLHVAS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.3 bits (142), Expect = 8e-11
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 15/127 (11%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            N   G TPLH+ A+ G   +   ++K+   +              T   G TPLH A  
Sbjct: 274 GNK-SGLTPLHLVAQEGHVPVADVLIKHGVMVD------------ATTRMGYTPLHVASH 320

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL 145
             +  +V+ L++     +        +PL  A     TDI   ++       N    +  
Sbjct: 321 YGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGT 378

Query: 146 TLLHSAV 152
           T L  A 
Sbjct: 379 TPLAIAK 385

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.9 bits (141), Expect = 1e-10
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
              G TPLH+A+ +G   IV  +L+       G          +++ +  TPLH A R  
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQ------RGASPN------VSNVKVETPLHMAARAG 58

Query: 88  HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 147
           H  V + L++     +      +QTPL  A     T++   +++      N       T 
Sbjct: 59  HTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTP 116

Query: 148 LHSAVMR 154
           LH A   
Sbjct: 117 LHIAARE 123

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 2e-10
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 14/122 (11%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
            +TPLH AAR+G   +V  +L+   A  N           +    G+TPLH A R  H  
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENN-ANPN-----------LATTAGHTPLHIAAREGHVE 127

Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 150
            V  L++K+      +     TPL +A       +A  ++++     N      LT LH 
Sbjct: 128 TVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHV 185

Query: 151 AV 152
           AV
Sbjct: 186 AV 187

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 22/127 (17%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
           KG TPLH+AA+ G   +   +L     +                  G TPLH AV + + 
Sbjct: 145 KGFTPLHVAAKYGKVRVAE-LL-----LERDAHPN------AAGKNGLTPLHVAVHHNNL 192

Query: 90  NVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL 145
           ++V++L+ +     G           TPL IA   +  ++A  ++       N    + +
Sbjct: 193 DIVKLLLPR-----GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGV 246

Query: 146 TLLHSAV 152
           T LH A 
Sbjct: 247 TPLHLAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                G TPLH+A+  G+  +V  +L+      +  +             G +PLH A +
Sbjct: 307 TTR-MGYTPLHVASHYGNIKLVKFLLQ------HQADVN------AKTKLGYSPLHQAAQ 353

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
             H ++V +L+K    P   +++   TPL+IA       + 
Sbjct: 354 QGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVT 393

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
            K    G +PLH AA+ G   IV+ +LK   +                  +G TPL  A 
Sbjct: 339 AKTKL-GYSPLHQAAQQGHTDIVTLLLKNGASPN------------EVSSDGTTPLAIAK 385

Query: 85  RNKHENVVRMLVKK 98
           R  + +V  +L   
Sbjct: 386 RLGYISVTDVLKVV 399

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 130
              + G TPLH A    H  +V+ L+++        N   +TPL +A  +  T++A +++
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLL 67

Query: 131 DQRPESLNHRLPEELTLLHSAV 152
             + + +N +  ++ T LH A 
Sbjct: 68  QNKAK-VNAKAKDDQTPLHCAA 88

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.1 bits (140), Expect = 7e-11
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 24  LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 83
           L   +   ET LH+A R  D   +  +      + N         L     +G+T LH  
Sbjct: 162 LANGHEPDETALHLAVRSVDRTSLHIVDF---LVQNSGN------LDKQTGKGSTALHYC 212

Query: 84  VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 130
               +   +++L++  +  +   N + +TPL IA           + 
Sbjct: 213 CLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
           KG T LH      +   +  +L+   +I             I ++ G TPL  A R KHE
Sbjct: 204 KGSTALHYCCLTDNAECLKLLLRGKASIE------------IANESGETPLDIAKRLKHE 251

Query: 90  NVVRMLVK 97
           +   +L +
Sbjct: 252 HCEELLTQ 259

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 56.3 bits (137), Expect = 9e-11
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           ++   G +P+H AAR G    +  ++++  A  N           + D  G  P+H AV+
Sbjct: 64  QDT-SGTSPVHDAARTGFLDTLKVLVEHG-ADVN-----------VPDGTGALPIHLAVQ 110

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             H  VV  L  +  +     +    TPL +A+     D+   +   
Sbjct: 111 EGHTAVVSFLAAESDLHRR--DARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.3 bits (119), Expect = 3e-08
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 21/92 (22%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
           +    L  AA  GD   V  +L       +             +  G T L   +     
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPD-----------ALNRFGKTALQVMMFG-ST 48

Query: 90  NVVRMLVKKDRIPLG----YLNNAEQTPLSIA 117
            +   L+K+     G      + +  +P+  A
Sbjct: 49  AIALELLKQ-----GASPNVQDTSGTSPVHDA 75

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 23/96 (23%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            N + G+T L +    G  AI   +LK       G          + D  G +P+H+A R
Sbjct: 32  LNRF-GKTALQVMMF-GSTAIALELLK------QGASPN------VQDTSGTSPVHDAAR 77

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIA 117
               + +++LV+      G   N        P+ +A
Sbjct: 78  TGFLDTLKVLVEH-----GADVNVPDGTGALPIHLA 108

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 17/104 (16%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
                  L  AAR G    V  IL     + NG +          D  G+TPLH A RN 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVR-IL-----MANGADVA------AKDKNGSTPLHLAARNG 68

Query: 88  HENVVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 129
           H  VV++L++   D   +   +   +T   I+ID+   D+A  +
Sbjct: 69  HLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 14/127 (11%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           KN  + E PLH AA + D  IV  +L      +              DD+GNT L+ AV 
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLFSGLDDS------------QFDDKGNTALYYAVD 104

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL 145
           + +   V++ VKK+   + Y     +T    A+  +   I  + + + P      L   L
Sbjct: 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILL 162

Query: 146 TLLHSAV 152
           + +H  +
Sbjct: 163 SCIHITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                 +T  + A  + D +IVS  L   P+                     + +H  ++
Sbjct: 124 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-------------FDLAILLSCIHITIK 170

Query: 86  NKHENVVRMLVKK 98
           N H +++ +L+  
Sbjct: 171 NGHVDMMILLLDY 183

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.1 bits (113), Expect = 4e-07
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 29/114 (25%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K +  G +  + A    +  +V   L     +  G              E   PLH A  
Sbjct: 26  KADVHGHSASYYAIADNNVRLV-CTL-----LNAGAL--------KNLLENEFPLHQAAT 71

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
            +   +V++L+       + D        +   T L  A+DS         + +
Sbjct: 72  LEDTKIVKILLFSGLDDSQFD--------DKGNTALYYAVDSGNMQTVKLFVKK 117

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 13/70 (18%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTP-LHNAVRNKHE 89
             + +HI  + G   ++  +L Y    TN             +     P +  A+ NK  
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYM-TSTN-----------TNNSLLFIPDIKLAIDNKDI 208

Query: 90  NVVRMLVKKD 99
            +++ L K D
Sbjct: 209 EMLQALFKYD 218

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 12/84 (14%)

Query: 56  AITNGTESEPESLLR-----ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 110
            I      + +S L        D  G++  + A+ + +  +V  L+       G L N  
Sbjct: 6   RINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA-----GALKNLL 60

Query: 111 --QTPLSIAIDSSLTDIACFIIDQ 132
             + PL  A     T I   ++  
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFS 84

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 27/97 (27%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
             + ETP   AAR  D   +S +L+           + ++     D+ G T L       
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDR---------DVDA----VDENGRTALLFVAGLG 87

Query: 88  HENVVRMLVK-------KDRIPLGYLNNAEQTPLSIA 117
            +  VR+L +       +D            T L +A
Sbjct: 88  SDKCVRLLAEAGADLDHRD-------MRGGLTALHMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 23/137 (16%), Positives = 35/137 (25%), Gaps = 32/137 (23%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
           R    +G     I  + G            P+     +            E  TP   A 
Sbjct: 9   RTAG-EGAMEYLIEWKDGHSPSWV------PSSYIAAD---------VVSEYETPWWTAA 52

Query: 85  RNKHENVVRMLVK------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
           R   E  +  L++       D           +T L              + +   + L+
Sbjct: 53  RKADEQALSQLLEDRDVDAVD--------ENGRTALLFVAGLGSDKCVRLLAEAGAD-LD 103

Query: 139 HRLPEE-LTLLHSAVMR 154
           HR     LT LH A   
Sbjct: 104 HRDMRGGLTALHMAAGY 120

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           ++   G T LH+AA    P +V  +++       G + E      + D+ G T L  A  
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVE------LGADIE------VEDERGLTALELARE 152

Query: 86  NKHENVVRMLVKK 98
                     ++ 
Sbjct: 153 ILKTTPKGNPMQF 165

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 54.7 bits (133), Expect = 2e-10
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 28/115 (24%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
              +   +     A + GD   V    K    +  G +         T + G  PLH A 
Sbjct: 2   PLGS-MCDKEFMWALKNGDLDEV----KDY--VAKGEDVN------RTLEGGRKPLHYAA 48

Query: 85  RNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
                 ++  L+         D            TPL  A+          ++ +
Sbjct: 49  DCGQLEILEFLLLKGADINAPD--------KHHITPLLSAVYEGHVSCVKLLLSK 95

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 13/68 (19%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +     TPL  A   G  + V    K    ++ G +        +   +G T       
Sbjct: 69  PDKH-HITPLLSAVYEGHVSCV----KLL--LSKGADKT------VKGPDGLTAFEATDN 115

Query: 86  NKHENVVR 93
              + +++
Sbjct: 116 QAIKALLQ 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +N+   ++P   A   G   I++ +LK+A    N             +  G   L  A  
Sbjct: 68  QNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLN-----------KHNRYGGNALIPAAE 115

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI 118
             H + V++L++  R  + + N+   T L  A+
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV 148

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.8 bits (133), Expect = 6e-10
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 28/136 (20%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K   +    L  A +     +   IL          + +        D EGNTPL+ AV 
Sbjct: 2   KTY-EVGALLEAANQRDTKKVKE-IL-----QDTTYQVD------EVDTEGNTPLNIAVH 48

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
           N    + + L+        ++        +   +P   A     T+I  +++      LN
Sbjct: 49  NNDIEIAKALIDRGADINLQN--------SISDSPYLYAGAQGRTEILAYMLKHATPDLN 100

Query: 139 HRLPEELTLLHSAVMR 154
                    L  A  +
Sbjct: 101 KHNRYGGNALIPAAEK 116

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 6e-07
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 26  KNNWKGETPLHIAARVGDPAIVST-ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
           +N+  G T L  A  + +   +   I+K    + NG +        I D+ G T +  A 
Sbjct: 136 QND-FGYTALIEAVGLREGNQLYQDIVKLL--MENGADQS------IKDNSGRTAMDYAN 186

Query: 85  RNKHENVVRMLVKKD 99
           +  +  + ++L + +
Sbjct: 187 QKGYTEISKILAQYN 201

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 27/97 (27%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
             + ETP   AAR  D   +S +L+           + ++     D+ G T L       
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLEDR---------DVDA----VDENGRTALLFVAGLG 88

Query: 88  HENVVRMLVK-------KDRIPLGYLNNAEQTPLSIA 117
            +  VR+L +       +D            T L +A
Sbjct: 89  SDKCVRLLAEAGADLDHRD-------MRGGLTALHMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 25/134 (18%), Positives = 37/134 (27%), Gaps = 23/134 (17%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI---TDDEGNTPLHNAVRNK 87
           GE    I +R          ++Y     +G          I      E  TP   A R  
Sbjct: 1   GEVNKIIGSRTAG----EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKA 56

Query: 88  HENVVRMLVK------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL 141
            E  +  L++       D           +T L              + +   + L+HR 
Sbjct: 57  DEQALSQLLEDRDVDAVD--------ENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRD 107

Query: 142 PE-ELTLLHSAVMR 154
               LT LH A   
Sbjct: 108 MRGGLTALHMAAGY 121

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 24/134 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           ++   G T LH+AA    P +V  +++       G + E      + D+ G T L  A  
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVE------LGADIE------VEDERGLTALELARE 153

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAE-QTPLSIAIDSSLTDIACFIIDQRPESL 137
                     ++       +  I +      E      I           +++  +    
Sbjct: 154 ILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWK---- 209

Query: 138 NHRLPEELTLLHSA 151
           +    E +  +H A
Sbjct: 210 DGGDCEWVKGVHVA 223

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                G TPLH+A      +++  +LK       G +             G TPL +A+ 
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLK------AGADPT------ARMYGGRTPLGSALL 234

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
             +  + R+L      P       + +P S +   S +D  
Sbjct: 235 RPNPILARLLRAHG-APEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 25/150 (16%), Positives = 38/150 (25%), Gaps = 25/150 (16%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G+T LH+A        +   L     +      E    L + +D G T LH A      +
Sbjct: 9   GDTALHLAVIHQHEPFLD-FL-----LGFSAGHEY---LDLQNDLGQTALHLAAILGEAS 59

Query: 91  VVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPE 143
            V  L          +            T L +A        AC ++  RP        +
Sbjct: 60  TVEKLYAAGAGVLVAE--------RGGHTALHLACRVRAHTCACVLLQPRPS-HPRDASD 110

Query: 144 ELTLLHSAVMRQNYGEPMIFISLNKCLSIV 173
                           P    S     +  
Sbjct: 111 TYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 6e-09
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 28/134 (20%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +N   G TPLH+A    D  +V  +L        G +       +     G TPLH AV 
Sbjct: 154 ENY-DGHTPLHVAVIHKDAEMVR-LL-----RDAGADLN-----KPEPTCGRTPLHLAVE 201

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
            +  +V+ +L+K       +            +TPL  A+      +A  +         
Sbjct: 202 AQAASVLELLLKAGADPTARM--------YGGRTPLGSALLRPNPILARLLRAHGAP-EP 252

Query: 139 HRLPEELTLLHSAV 152
               ++L+   S+ 
Sbjct: 253 EDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                   P  + ++           +                    + +G+TPLH AV 
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-----------AENYDGHTPLHVAVI 167

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
           +K   +VR+L        K +           +TPL +A+++    +   ++    +   
Sbjct: 168 HKDAEMVRLLRDAGADLNKPE-------PTCGRTPLHLAVEAQAASVLELLLKAGAD-PT 219

Query: 139 HRLPEELTLLHSAVMR 154
            R+    T L SA++R
Sbjct: 220 ARMYGGRTPLGSALLR 235

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 13/73 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +N+  G+T LH+AA +G+ + V   L        G          + +  G+T LH A R
Sbjct: 41  QND-LGQTALHLAAILGEASTVE-KL-----YAAGAGVL------VAERGGHTALHLACR 87

Query: 86  NKHENVVRMLVKK 98
            +      +L++ 
Sbjct: 88  VRAHTCACVLLQP 100

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 13/74 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +    G TPL  A    +P +   +  +  A                  +  +P  ++  
Sbjct: 221 RMYG-GRTPLGSALLRPNPILARLLRAHG-APEP-----------EDGGDKLSPCSSSGS 267

Query: 86  NKHENVVRMLVKKD 99
           +   +      + D
Sbjct: 268 DSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 68  LLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDI 125
           +     ++G+T LH AV ++HE  +  L+        L   N+  QT L +A        
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 126 ACFIIDQ 132
              +   
Sbjct: 61  VEKLYAA 67

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.1 bits (134), Expect = 2e-10
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+   G   +H AAR G    +   L     +    +        I D+EGN PLH A +
Sbjct: 66  KDRT-GFAVIHDAARAGFLDTLQ-TL-----LEFQADVN------IEDNEGNLPLHLAAK 112

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             H  VV  LVK     +G+ N+   T   +A      ++   +   
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 29/135 (21%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +N + G T L +    G+P I    L     +  G   +      + D  G   +H+A R
Sbjct: 34  QNGF-GRTALQVMKL-GNPEIA-RRL-----LLRGANPD------LKDRTGFAVIHDAAR 79

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
               + ++ L+        +D        N    PL +A       +  F++     ++ 
Sbjct: 80  AGFLDTLQTLLEFQADVNIED--------NEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131

Query: 139 HRLPEELTLLHSAVM 153
           HR  +  T    A +
Sbjct: 132 HRNHKGDTACDLARL 146

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 28/110 (25%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
                L  AA  GD   + T L     + N             +  G T L       + 
Sbjct: 4   PWGNELASAAARGDLEQL-TSL-----LQNNVNVN------AQNGFGRTALQVMKLG-NP 50

Query: 90  NVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
            + R L+        KD              +  A  +   D    +++ 
Sbjct: 51  EIARRLLLRGANPDLKD--------RTGFAVIHDAARAGFLDTLQTLLEF 92

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.3 bits (132), Expect = 3e-10
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 12/71 (16%)

Query: 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
          N +GET LHIA+  GD   V   L     + NG++        + D  G TPLH A  + 
Sbjct: 7  NHRGETLLHIASIKGDIPSV-EYL-----LQNGSDPN------VKDHAGWTPLHEACNHG 54

Query: 88 HENVVRMLVKK 98
          H  VV +L++ 
Sbjct: 55 HLKVVELLLQH 65

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.0 bits (131), Expect = 4e-10
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 22/105 (20%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K++  G TPLH A   G   +V  +L     + +            T  + ++PLH+A +
Sbjct: 39  KDH-AGWTPLHEACNHGHLKVVE-LL-----LQHKALVN------TTGYQNDSPLHDAAK 85

Query: 86  NKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIA 126
           N H ++V++L+       G     +N     P+    D S+  + 
Sbjct: 86  NGHVDIVKLLLSY-----GASRNAVNIFGLRPVDYTDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 13/72 (18%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                 ++PLH AA+ G   IV  +L     ++ G            +  G  P+     
Sbjct: 72  TGYQ-NDSPLHDAAKNGHVDIV-KLL-----LSYGASRN------AVNIFGLRPVDYTDD 118

Query: 86  NKHENVVRMLVK 97
              ++++ +  K
Sbjct: 119 ESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 15/53 (28%)

Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIA 117
           T+  G T LH A        V  L++       KD        +A  TPL  A
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD--------HAGWTPLHEA 50

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 53.9 bits (131), Expect = 4e-10
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 27/109 (24%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH+AAR G   +V  +L     +  G +          D  G TPLH A RN H  
Sbjct: 2   GRTPLHLAARNGHLEVVK-LL-----LEAGADVN------AKDKNGRTPLHLAARNGHLE 49

Query: 91  VVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           VV++L+        KD           +TPL +A  +   ++   +++ 
Sbjct: 50  VVKLLLEAGADVNAKD--------KNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.7 bits (128), Expect = 1e-09
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 28/114 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+   G TPLH+AAR G   +V  +L     +  G +          D  G TPLH A R
Sbjct: 31  KDK-NGRTPLHLAARNGHLEVVK-LL-----LEAGADVN------AKDKNGRTPLHLAAR 77

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           N H  VV++L+        KD           +TPL +A  +   ++   +++ 
Sbjct: 78  NGHLEVVKLLLEAGADVNAKD--------KNGRTPLHLAARNGHLEVVKLLLEA 123

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.3 bits (132), Expect = 5e-10
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 27/97 (27%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
             + E+ L +A+  G   IV  +L     +    +        I D  G TPL  AVR  
Sbjct: 66  AKERESALSLASTGGYTDIVG-LL-----LERDVDIN------IYDWNGGTPLLYAVRGN 113

Query: 88  HENVVRMLV-------KKDRIPLGYLNNAEQTPLSIA 117
           H   V  L+        +         ++  TP+ +A
Sbjct: 114 HVKCVEALLARGADLTTEA--------DSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 12/71 (16%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           +W G TPL  A R      V  +L        G +           D G TP+  AV   
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLA------RGADLT------TEADSGYTPMDLAVALG 146

Query: 88  HENVVRMLVKK 98
           +  V +++   
Sbjct: 147 YRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 20/91 (21%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
               +H  A  G+   +   L+    + N             D+ G TPL  A       
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVN-----------KPDERGFTPLIWASAFGEIE 50

Query: 91  VVRMLVKKDRIPLG----YLNNAEQTPLSIA 117
            VR L++      G     L    ++ LS+A
Sbjct: 51  TVRFLLEW-----GADPHILAKERESALSLA 76

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 21/96 (21%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K + +G TPL  A+  G+   V  +L+       G +        I   E  + L  A  
Sbjct: 31  KPDERGFTPLIWASAFGEIETVRFLLE------WGADPH------ILAKERESALSLAST 78

Query: 86  NKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIA 117
             + ++V +L+++            +    TPL  A
Sbjct: 79  GGYTDIVGLLLER-----DVDINIYDWNGGTPLLYA 109

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 5e-10
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
                  E  LH+A +V + A +  +      I NG        L     +GNT LH A 
Sbjct: 184 PDAQAPEELVLHLAVKVANQASLPLV---DFIIQNGGH------LDAKAADGNTALHYAA 234

Query: 85  RNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL 141
                + +++L+K  R  +G +N A +T L IA      +    +   +  +    L
Sbjct: 235 LYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPL 290

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.3 bits (132), Expect = 6e-10
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 21/109 (19%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
               E+ L +A   G   IV  +L     +  G +          D  G TPL  AV   
Sbjct: 66  GKGRESALSLACSKGYTDIV-KML-----LDCGVDVN------EYDWNGGTPLLYAVHGN 113

Query: 88  HENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           H   V+ML++      G       ++    + +A+      +   I   
Sbjct: 114 HVKCVKMLLES-----GADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.9 bits (131), Expect = 8e-10
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 21/91 (23%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
               +H  A  G+   ++T ++                   TD+EG TPL  A  +    
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE------QENVIN------HTDEEGFTPLMWAAAHGQIA 50

Query: 91  VVRMLVKKDRIPLG----YLNNAEQTPLSIA 117
           VV  L++      G     L    ++ LS+A
Sbjct: 51  VVEFLLQN-----GADPQLLGKGRESALSLA 76

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.9 bits (131), Expect = 8e-10
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 22/111 (19%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +  +G TPL  AA  G  A+V  +L+      NG + +      +      + L  A  
Sbjct: 32  TDE-EGFTPLMWAAAHGQIAVVEFLLQ------NGADPQ------LLGKGRESALSLACS 78

Query: 86  NKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             + ++V+ML+       G      +    TPL  A+  +       +++ 
Sbjct: 79  KGYTDIVKMLLDC-----GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.1 bits (135), Expect = 6e-10
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 12/104 (11%)

Query: 30  KGETPLHIAARVGDPAIVSTI--LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           +G   L    R  D  ++  I  L   P I     +           + N  L  A+R  
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA------TIPGDANELLRLALRLG 330

Query: 88  HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
           ++    +L+    +    L   +     I       D+    ++
Sbjct: 331 NQGACALLLSIPSV----LALTKANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 11/108 (10%)

Query: 11  HELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR 70
            + L +L   D +++    +      +AA  G   +++ + + AP               
Sbjct: 108 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA---------- 157

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE-QTPLSIA 117
           +   E       A  N H +V+  L +        +  AE       A
Sbjct: 158 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)

Query: 22  SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
           S   K   K E    +AA  G  + + T+      +T+    +      +   E      
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLL---LTSDEIVK------VIQAENYQAFR 133

Query: 82  NAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIA 117
            A  N H +V+  L +      +  +         +A
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 27  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
                   L +A R+G+    + +L   P++   T++       I +  G   L      
Sbjct: 315 IPGDANELLRLALRLGNQGACALLLSI-PSVLALTKANN---YYINETGGRLDLRAVALE 370

Query: 87  KHENV 91
            H + 
Sbjct: 371 HHHHH 375

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 11/111 (9%), Positives = 26/111 (23%), Gaps = 12/111 (10%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
             +G T      + G   I  T       +  G +      +          +   + N 
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD------ITALYKPYKIVVFKNIFNY 125

Query: 88  H------ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
                    + +++  +  + L   +    T L              + D 
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 21/166 (12%), Positives = 43/166 (25%), Gaps = 37/166 (22%)

Query: 27  NNWKGETPLHIAARVGDPAIVSTILK---------------YAPAITNGTESEPE---SL 68
           N       +  AA +G       + +               Y     N  E+  +    L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 69  LR------ITDDEGNTPLHNAVRNKHENV------VRMLVKKDRIPLGYLNNAEQTPLSI 116
           +           EG T      +    ++       ++ ++K    +  L    +  +  
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFK 120

Query: 117 AI------DSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 156
            I      ++ +  +   I  Q    L  +    LT L      Q 
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.8 bits (133), Expect = 8e-10
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 28/141 (19%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR-------ITDDEGNT 78
           +    G TPL IA+  G                    +     +         TD  G T
Sbjct: 6   RGP-DGFTPLMIASCSGGGLETGNS-----EEEEDAPAVISDFIYQGASLHNQTDRTGET 59

Query: 79  PLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
            LH A R    +  + L+        +D        N  +TPL  A+ +    +   +I 
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQD--------NMGRTPLHAAVSADAQGVFQILIR 111

Query: 132 QRPESLNHRLPEELTLLHSAV 152
            R   L+ R+ +  T L  A 
Sbjct: 112 NRATDLDARMHDGTTPLILAA 132

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            ++  G++ LH AA V +      +L     + NG   +      + ++   TPL  A R
Sbjct: 153 VDDL-GKSALHWAAAVNNVDAAV-VL-----LKNGANKD------MQNNREETPLFLAAR 199

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
                  ++L+          ++ ++ P  IA +    DI   +  +
Sbjct: 200 EGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 28/114 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           + +  G TPL +AAR+    ++   L     I +  +          DD G + LH A  
Sbjct: 120 RMH-DGTTPLILAARLAVEGML-EDL-----INSHADVN------AVDDLGKSALHWAAA 166

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             + +   +L+K       ++        N E+TPL +A      + A  ++D 
Sbjct: 167 VNNVDAAVVLLKNGANKDMQN--------NREETPLFLAAREGSYETAKVLLDH 212

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.0 bits (126), Expect = 8e-10
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 27/94 (28%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G TPLH+AAR G   +V    K    +  G +          D  G TPLH A RN H  
Sbjct: 2   GRTPLHLAARNGHLEVV----KL--LLEAGADVN------AKDKNGRTPLHLAARNGHLE 49

Query: 91  VVRMLV-------KKDRIPLGYLNNAEQTPLSIA 117
           VV++L+        KD           +TPL +A
Sbjct: 50  VVKLLLEAGADVNAKD--------KNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.8 bits (123), Expect = 3e-09
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 13/73 (17%)

Query: 26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
          K+   G TPLH+AAR G   +V  +L     +  G +          D  G TPLH A R
Sbjct: 31 KDK-NGRTPLHLAARNGHLEVVK-LL-----LEAGADVN------AKDKNGRTPLHLAAR 77

Query: 86 NKHENVVRMLVKK 98
          N H  VV++L++ 
Sbjct: 78 NGHLEVVKLLLEA 90

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 27/115 (23%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
           R+        L  AA  G+  +V    + A  +    +          ++EG T LHNA+
Sbjct: 15  RRARLNPLVLLLDAALTGELEVV----QQA--VKEMNDPS------QPNEEGITALHNAI 62

Query: 85  RNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
              + ++V  L+         D        +   TPL  A   + T I   ++  
Sbjct: 63  CGANYSIVDFLITAGANVNSPD--------SHGWTPLHCAASCNDTVICMALVQH 109

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 11/89 (12%), Positives = 14/89 (15%), Gaps = 22/89 (24%)

Query: 26  KNNWKGETPLHIAARV--GDPAIVSTILK------------YAPAITNGTESEPESLLRI 71
                G T          G     + +                       E   E   R 
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFRE 175

Query: 72  --------TDDEGNTPLHNAVRNKHENVV 92
                    D    T    A  +  E  V
Sbjct: 176 GESVTVLRRDGPEETDWWWAALHGQEGYV 204

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 27/112 (24%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           +W G +PLH+AA+ G  +    +L     +  G   +             TPLH A    
Sbjct: 31  DWLGTSPLHLAAQYGHFSTT-EVL-----LRAGVSRD------ARTKVDRTPLHMAASEG 78

Query: 88  HENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           H N+V +L+K       KD          + T L  A + +  ++   +I  
Sbjct: 79  HANIVEVLLKHGADVNAKD--------MLKMTALHWATEHNHQEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 28/108 (25%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +      TPLH+AA  G   IV  +L     + +G +          D    T LH A  
Sbjct: 63  RTKV-DRTPLHMAASEGHANIVE-VL-----LKHGADVN------AKDMLKMTALHWATE 109

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
           + H+ VV +L+K       +            +T   I+ID+   D+A
Sbjct: 110 HNHQEVVELLIKYGADVHTQS--------KFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 48.9 bits (118), Expect = 5e-08
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 28/109 (25%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
               L  AAR G    V  IL     + NG           TD  G +PLH A +  H +
Sbjct: 2   LGKKLLEAARAGQDDEVR-IL-----MANGAPFT-------TDWLGTSPLHLAAQYGHFS 48

Query: 91  VVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
              +L++       +           ++TPL +A      +I   ++  
Sbjct: 49  TTEVLLRAGVSRDART--------KVDRTPLHMAASEGHANIVEVLLKH 89

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.5 bits (109), Expect = 8e-07
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 13/70 (18%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+     T LH A       +V  ++KY   +                    T    ++ 
Sbjct: 96  KDML-KMTALHWATEHNHQEVVELLIKYGADVH------------TQSKFCKTAFDISID 142

Query: 86  NKHENVVRML 95
           N +E++  +L
Sbjct: 143 NGNEDLAEIL 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 22/111 (19%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            N    +TPLH+AA  G   IV   L     +    +          ++ GN PLH A  
Sbjct: 68  MNR-GDDTPLHLAASHGHRDIVQ-KL-----LQYKADIN------AVNEHGNVPLHYACF 114

Query: 86  NKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
              + V   LV       G      N   + P+  A       +       
Sbjct: 115 WGQDQVAEDLVAN-----GALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.4 bits (127), Expect = 3e-09
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
               +    R G+   V   L       N             DD G +PLH A R     
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLN-----------QGDDHGFSPLHWACREGRSA 53

Query: 91  VVRMLVKKDRIPLG----YLNNAEQTPLSIA 117
           VV ML+ +     G     +N  + TPL +A
Sbjct: 54  VVEMLIMR-----GARINVMNRGDDTPLHLA 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.4 bits (127), Expect = 3e-09
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 21/109 (19%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           +  G +PLH A R G  A+V  +L     I  G          + +   +TPLH A  + 
Sbjct: 36  DDHGFSPLHWACREGRSAVVE-ML-----IMRGARIN------VMNRGDDTPLHLAASHG 83

Query: 88  HENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           H ++V+ L++            +N     PL  A       +A  ++  
Sbjct: 84  HRDIVQKLLQY-----KADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 8/45 (17%), Positives = 15/45 (33%)

Query: 73  DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
             E    +    R  +   VR+ +      L   ++   +PL  A
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA 46

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 21/111 (18%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +     +P+H AA  G    +   L     I+ G          I   +  +PLH A  
Sbjct: 54  GDAVSDWSPMHEAAIHGHQLSL-RNL-----ISQGWAVN------IITADHVSPLHEACL 101

Query: 86  NKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             H + V++L+K      G     +     TPL  A  S   D    ++  
Sbjct: 102 GGHLSCVKILLKH-----GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 21/130 (16%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
              +PLH A   G  + V  IL     + +G +            + +TPL NA  +   
Sbjct: 91  DHVSPLHEACLGGHLSCVK-IL-----LKHGAQVN------GVTADWHTPLFNACVSGSW 138

Query: 90  NVVRMLVKKDRIPLG---YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 146
           + V +L++      G      +   +P+  A      +    +I      ++H++    T
Sbjct: 139 DCVNLLLQH-----GASVQPESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGT 192

Query: 147 LLHSAVMRQN 156
            L+ A   Q 
Sbjct: 193 PLYLACENQQ 202

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 22/106 (20%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
             +P+H AAR G    V   L     I  G   +             TPL+ A  N+   
Sbjct: 157 LASPIHEAARRGHVECV-NSL-----IAYGGNID------HKISHLGTPLYLACENQQRA 204

Query: 91  VVRMLVKK----DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
            V+ L++     ++         + +PL   + ++  ++AC ++D 
Sbjct: 205 CVKKLLESGADVNQ------GKGQDSPLHAVVRTASEELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 23/96 (23%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K +    TPL++A      A V   L     + +G +              ++PLH  VR
Sbjct: 186 KIS-HLGTPLYLACENQQRACVK-KL-----LESGADVN-------QGKGQDSPLHAVVR 231

Query: 86  NKHENVVRMLVKK----DRIPLGYLNNAEQTPLSIA 117
              E +  +L+              N   + P+ + 
Sbjct: 232 TASEELACLLMDFGADTQAK-----NAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 12/62 (19%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
            ++PLH   R     +   ++ +  A T              + EG  P+          
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFG-ADTQ-----------AKNAEGKRPVELVPPESPLA 269

Query: 91  VV 92
            +
Sbjct: 270 QL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 21/121 (17%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G  P       G   + + ++                          +P+H A  + H+ 
Sbjct: 33  GSKPAGPRDFPGIRLLSNPLM-------------------GDAVSDWSPMHEAAIHGHQL 73

Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 150
            +R L+ +    +  +     +PL  A           ++    + +N    +  T L +
Sbjct: 74  SLRNLISQG-WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFN 131

Query: 151 A 151
           A
Sbjct: 132 A 132

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 26/128 (20%)

Query: 15  NVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD 74
            V     +      +KG T LH AA+V +  IV  ++    +  +             D+
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-----------KQDE 311

Query: 75  EGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIAC 127
           +G TP+  A +     VV  L+         D          + T   +A  ++  +I  
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD--------ATDHTARQLAQANNHHNIVD 363

Query: 128 FIIDQRPE 135
                RPE
Sbjct: 364 IFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 27/149 (18%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPA--ITNGTESEPESLLRITDDEGNTPLHN 82
              +    T LH  A          ++ +     I  G +          D + NTPL  
Sbjct: 121 DPRH--NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN------AMDCDENTPLML 172

Query: 83  AVRNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE 135
           AV  +   +V  L+         +         +E++ L  A  +    +  ++++    
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYN--------KSERSALHQAAANRDFGMMVYMLNSTKL 224

Query: 136 --SLNHRLPEELTLLHSAVMRQNYGEPMI 162
              +       +T L      +   +   
Sbjct: 225 KGDIEELDRNGMTALMIVAHNEGRDQVAS 253

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG--TESEPESLLRITDDEGNTPLHNA 83
            +   G T L I A       V+   K    +  G   + +  +       +G T LH A
Sbjct: 231 LDR-NGMTALMIVAHNEGRDQVA-SAKLL--VEKGAKVDYDGAARKDSEKYKGRTALHYA 286

Query: 84  VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
            +  +  +V+ LV +        +   +TP+ +A      ++  ++I Q
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 23/134 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
               +    LH  A  G  AI   I + +  I             I      T LH    
Sbjct: 90  PEP-ESPIKLHTEAA-GSYAITEPITRESVNI-------------IDPRHNRTVLHWIAS 134

Query: 86  NKHENVVRMLVKKDRIPLGYL-------NNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
           N        L+  +              +  E TPL +A+ +    +  +++    +   
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PT 193

Query: 139 HRLPEELTLLHSAV 152
                E + LH A 
Sbjct: 194 IYNKSERSALHQAA 207

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 12/114 (10%), Positives = 23/114 (20%), Gaps = 23/114 (20%)

Query: 19  RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT 78
            ++    ++    +  L  A+  G        L                           
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNEL---------------------QHYSLY 63

Query: 79  PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           P      N ++ +        +IP           L      S   I   I  +
Sbjct: 64  PNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEAAGSY-AITEPITRE 115

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 28/133 (21%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           ++     +PLH AA  G   I   +L     +  G   +         ++  TPL  A  
Sbjct: 7   EHQ-NKRSPLHAAAEAGHVDIC-HML-----VQAGANID------TCSEDQRTPLMEAAE 53

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
           N H   V+ L+        KD            T L +A      ++  +++      +N
Sbjct: 54  NNHLEAVKYLIKAGALVDPKD--------AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105

Query: 139 HRLPEELTLLHSA 151
            +     T +  A
Sbjct: 106 CQDDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.0 bits (126), Expect = 8e-09
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 28/114 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +++  G TP+  A       +V  +L     ++ G++        I D+E N  LH A  
Sbjct: 107 QDD-GGWTPMIWATEYKHVDLV-KLL-----LSKGSDIN------IRDNEENICLHWAAF 153

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           +   ++  +L+         +            +PL IA   +  D     + +
Sbjct: 154 SGCVDIAEILLAAKCDLHAVN--------IHGDSPLHIAARENRYDCVVLFLSR 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.1 bits (121), Expect = 4e-08
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 28/112 (25%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           ++N +    LH AA  G   I   IL     +    +          +  G++PLH A R
Sbjct: 140 RDN-EENICLHWAAFSGCVDIAE-IL-----LAAKCDLH------AVNIHGDSPLHIAAR 186

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 130
               + V + +        K+           +TPL  A  +S    A  + 
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKN--------KEGETPLQCASLNSQVWSALQMS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.9 bits (118), Expect = 9e-08
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            N   G++PLHIAAR      V  +      ++  ++        + + EG TPL  A  
Sbjct: 173 VNI-HGDSPLHIAARENRYDCV-VLF-----LSRDSDVT------LKNKEGETPLQCASL 219

Query: 86  NKHENVVRMLVKK 98
           N        + K 
Sbjct: 220 NSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 130
           +      +PLH A    H ++  MLV+     +   +  ++TPL  A +++  +   ++I
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 131 DQRPESLNHRLPEELTLLHSAV 152
                 ++ +  E  T LH A 
Sbjct: 65  KAGAL-VDPKDAEGSTCLHLAA 85

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 28/115 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+   G+TPL  +   G   +    L     + +G            + EG TPL  A +
Sbjct: 97  KDFS-GKTPLMWSIIFGYSEMS-YFL-----LEHGANVN------DRNLEGETPLIVASK 143

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133
                +V+ L++       +D            T  + A      ++     + R
Sbjct: 144 YGRSEIVKKLLELGADISARD--------LTGLTAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.8 bits (128), Expect = 3e-09
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 28/114 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           ++++   TPL +A  +G    +   L     + N  + E        D EG+T L  AV+
Sbjct: 31  RDSY-NRTPLMVACMLGMENAID-KL-----VENFDKLE------DKDIEGSTALIWAVK 77

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           N    +   L+        KD         + +TPL  +I    ++++ F+++ 
Sbjct: 78  NNRLGIAEKLLSKGSNVNTKD--------FSGKTPLMWSIIFGYSEMSYFLLEH 123

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 18/94 (19%), Positives = 21/94 (22%), Gaps = 33/94 (35%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           GE    I         +                  + L    D    TPL  A     EN
Sbjct: 8   GEIVEKIKDEKSINQNL------------------DFLRNYRDSYNRTPLMVACMLGMEN 49

Query: 91  VVRMLV-------KKDRIPLGYLNNAEQTPLSIA 117
            +  LV        KD            T L  A
Sbjct: 50  AIDKLVENFDKLEDKD--------IEGSTALIWA 75

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 23/143 (16%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAI---TNGTESEPESLLR------ITDDEG 76
            N   G++ + +A        ++   K    +        ++ +  L             
Sbjct: 153 VNC-HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211

Query: 77  NTPLHNAVRNKHEN---VVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFI 129
            T LH AV + H     V  +L++K     G      N    TPL +A + +  D+   +
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRK-----GANVNEKNKDFMTPLHVAAERAHNDVMEVL 266

Query: 130 IDQRPESLNHRLPEELTLLHSAV 152
                + +N       T LH A 
Sbjct: 267 HKHGAK-MNALDSLGQTALHRAA 288

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 20/140 (14%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+   G  PLH A   G   +   +L     + +G            D    TPLH A  
Sbjct: 87  KDK-GGLVPLHNACSYGHYEVTE-LL-----LKHGACVN------AMDLWQFTPLHEAAS 133

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP-----ESLNHR 140
                V  +L+         +N   ++ + +A    L +   +              +  
Sbjct: 134 KNRVEVCSLLLSHG-ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLA 192

Query: 141 LPEELTLLHSAVMRQ-NYGE 159
             ++   L     +Q    E
Sbjct: 193 KVKKTLALEIINFKQPQSHE 212

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 23/133 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +  +  TPLH+AA      IV  +L     + +G +          D  G  PLHNA  
Sbjct: 54  SDG-RKSTPLHLAAGYNRVRIVQ-LL-----LQHGADVH------AKDKGGLVPLHNACS 100

Query: 86  NKHENVVRMLVKK----DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL 141
             H  V  +L+K     + +     +  + TPL  A   +  ++   ++    +      
Sbjct: 101 YGHYEVTELLLKHGACVNAM-----DLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVN 154

Query: 142 PEELTLLHSAVMR 154
               + +  A   
Sbjct: 155 CHGKSAVDMAPTP 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 14/94 (14%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           KN     TPLH+AA      ++  + K      +G +          D  G T LH A  
Sbjct: 243 KNK-DFMTPLHVAAERAHNDVMEVLHK------HGAKMN------ALDSLGQTALHRAAL 289

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID 119
             H    R+L+         ++    T   +  +
Sbjct: 290 AGHLQTCRLLLSYG-SDPSIISLQGFTAAQMGNE 322

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 22/109 (20%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR------ITDDEGNTPLHNA 83
             ET LH A     P                     E LLR        + +  TPLH A
Sbjct: 210 SHETALHCAVASLHPKRKQVA---------------ELLLRKGANVNEKNKDFMTPLHVA 254

Query: 84  VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
               H +V+ +L K     +  L++  QT L  A  +        ++  
Sbjct: 255 AERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 13/123 (10%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
             +  L  AAR G+   +  +L                    +D   +TPLH A      
Sbjct: 23  YKKDELLEAARSGNEEKLMALL-----TPLNVNCH------ASDGRKSTPLHLAAGYNRV 71

Query: 90  NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLH 149
            +V++L++     +   +     PL  A      ++   ++      +N     + T LH
Sbjct: 72  RIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLH 129

Query: 150 SAV 152
            A 
Sbjct: 130 EAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 17/72 (23%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            ++  G+T LH AA  G       +L Y  +  +           I   +G T       
Sbjct: 276 LDS-LGQTALHRAALAGHLQTCRLLLSYG-SDPS-----------IISLQGFTAAQMG-- 320

Query: 86  NKHENVVRMLVK 97
             +E V ++L +
Sbjct: 321 --NEAVQQILSE 330

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                  TPLH A R G  ++V   L     +  G +        + D EG + +H A +
Sbjct: 71  LGGDLNSTPLHWATRQGHLSMVV-QL-----MKYGADPS------LIDGEGCSCIHLAAQ 118

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
             H ++V  L+ K    +  ++    TPL  A
Sbjct: 119 FGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            + +   T LH A   G+  ++S +      +  G   +        + +G + L  A +
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLL------LEAGANVD------AQNIKGESALDLAKQ 219

Query: 86  NKHENVVRMLVKK 98
            K+  ++  L + 
Sbjct: 220 RKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 27/114 (23%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            ++      +  A + G        L     +  G +      +R  D E  T LH A  
Sbjct: 5   IDD-YSTWDIVKATQYGIYERCR-EL-----VEAGYD------VRQPDKENVTLLHWAAI 51

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           N   ++V+  +       +          +   TPL  A       +   ++  
Sbjct: 52  NNRIDLVKYYISKGAIVDQLG-------GDLNSTPLHWATRQGHLSMVVQLMKY 98

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 28/115 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +  +G + +H+AA+ G  +IV+  L     I  G + +      + D  G TPL  A  
Sbjct: 105 IDG-EGCSCIHLAAQFGHTSIVA-YL-----IAKGQDVD------MMDQNGMTPLMWAAY 151

Query: 86  NKHE-NVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             H  +  R+L+         D          + T L  A+ +  T +   +++ 
Sbjct: 152 RTHSVDPTRLLLTFNVSVNLGD-------KYHKNTALHWAVLAGNTTVISLLLEA 199

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.7 bits (125), Expect = 4e-09
 Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 18/101 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +      P+H AAR G    +  + +       G   +      + D  G  P+  A  
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHR------AGARLD------VRDAWGRLPVDLAEE 120

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
             H +V R L                    I      +DI 
Sbjct: 121 LGHRDVARYLRAA-----AGGTRG-SNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 13/69 (18%)

Query: 30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
               L  AA  G    V  +L+       G            +  G  P+   +     
Sbjct: 11 PSADWLATAAARGRVEEVRALLE------AGANPN------APNSYGRRPIQVMMMG-SA 57

Query: 90 NVVRMLVKK 98
           V  +L+  
Sbjct: 58 RVAELLLLH 66

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 23/110 (20%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT-PLHNAVRN 86
           N  G  P+ +    G   +   +L       +G E          D    T P+H+A R 
Sbjct: 42  NSYGRRPIQVMMM-GSARVAELLLL------HGAEPN------CADPATLTRPVHDAARE 88

Query: 87  KHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
              + + +L +      G      +   + P+ +A +    D+A ++   
Sbjct: 89  GFLDTLVVLHRA-----GARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 9/51 (17%)

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIA 117
            + +     L  A        VR L++      G      N+  + P+ + 
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEA-----GANPNAPNSYGRRPIQVM 52

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.4 bits (127), Expect = 6e-09
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +   GET LH+AAR          L     +    ++       I D+ G TPLH AV 
Sbjct: 21  TDR-TGETALHLAARYSRSDAA-KRL-----LEASADAN------IQDNMGRTPLHAAVS 67

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
              + V ++L++     L    +   TPL +A   ++  +   +I+ 
Sbjct: 68  ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.0 bits (126), Expect = 6e-09
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 28/114 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           + +  G TPL +AAR+    ++  ++    A  N             DD G + LH A  
Sbjct: 88  RMH-DGTTPLILAARLAVEGMLEDLINSH-ADVN-----------AVDDLGKSALHWAAA 134

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             + +   +L+K       ++        N E+TPL +A      + A  ++D 
Sbjct: 135 VNNVDAAVVLLKNGANKDMQN--------NREETPLFLAAREGSYETAKVLLDH 180

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.0 bits (126), Expect = 7e-09
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 28/114 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            ++  G++ LH AA V +      +L     + NG   +      + ++   TPL  A R
Sbjct: 121 VDD-LGKSALHWAAAVNNVDAAV-VL-----LKNGANKD------MQNNREETPLFLAAR 167

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
                  ++L+         D        + ++ P  IA +    DI   + + 
Sbjct: 168 EGSYETAKVLLDHFANRDITD--------HMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 27/114 (23%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           ++N  G TPLH A       +   +++      +               +G TPL  A R
Sbjct: 54  QDN-MGRTPLHAAVSADAQGVFQILIRNRATDLD-----------ARMHDGTTPLILAAR 101

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
              E ++  L+         D        +  ++ L  A   +  D A  ++  
Sbjct: 102 LAVEGMLEDLINSHADVNAVD--------DLGKSALHWAAAVNNVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLT 123
            TD  G T LH A R    +  + L+        +D        N  +TPL  A+ +   
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASADANIQD--------NMGRTPLHAAVSADAQ 71

Query: 124 DIACFIIDQRPESLNHRLPEELTLLHSAV 152
            +   +I  R   L+ R+ +  T L  A 
Sbjct: 72  GVFQILIRNRATDLDARMHDGTTPLILAA 100

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.9 bits (128), Expect = 6e-09
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 22/112 (19%)

Query: 25  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
           R     G T LH+AA  G   ++  +L     I    +        I D +G TPLH A 
Sbjct: 194 RHAK-SGGTALHVAAAKGYTEVL-KLL-----IQARYDVN------IKDYDGWTPLHAAA 240

Query: 85  RNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
               E   R+LV+            +N   QT   +A +  L  +      Q
Sbjct: 241 HWGKEEACRILVEN-----LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.5 bits (127), Expect = 8e-09
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 21/126 (16%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +N  G  PLH AA  G   I    L     I+ G        +   + EG+TPL  A  
Sbjct: 102 PDNE-GWIPLHAAASCGYLDIAE-YL-----ISQGAH------VGAVNSEGDTPLDIAEE 148

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL 145
              E +++  V +  + +       +          L D   ++                
Sbjct: 149 EAMEELLQNEVNRQGVDI-------EAARKEEERIMLRDARQWLNSGHIN-DVRHAKSGG 200

Query: 146 TLLHSA 151
           T LH A
Sbjct: 201 TALHVA 206

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            N   G T LH A    +  +V   L     + NG            D+EG  PLH A  
Sbjct: 69  ANV-DGLTALHQACIDDNVDMVK-FL-----VENGANIN------QPDNEGWIPLHAAAS 115

Query: 86  NKHENVVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPE 143
             + ++   L+ +      +G +N+   TPL IA + ++ ++    ++++   +     E
Sbjct: 116 CGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

Query: 144 ELTLLHSAV 152
           E  ++    
Sbjct: 173 EERIMLRDA 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 27/110 (24%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
                   A   GD   V  +L+       G +          + +G T LH A  + + 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLE------RGADIN------YANVDGLTALHQACIDDNV 86

Query: 90  NVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           ++V+ LV       + D        N    PL  A      DIA ++I Q
Sbjct: 87  DMVKFLVENGANINQPD--------NEGWIPLHAAASCGYLDIAEYLISQ 128

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 18/90 (20%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+   G TPLH AA  G       IL     + N  +      +   +  G T    A  
Sbjct: 228 KDYD-GWTPLHAAAHWGKEEAC-RIL-----VENLCD------MEAVNKVGQTAFDVADE 274

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLS 115
           +    +  +  K+       L++ ++   S
Sbjct: 275 DILGYLEELQKKQ-----NLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 15/128 (11%)

Query: 24  LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 83
           ++  + K +    +   +G    +       P +    +++          +       A
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDL------EPPVVKRKKTK-------VKFDDGAVFLAA 47

Query: 84  VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPE 143
             +     V  L+++    + Y N    T L  A      D+  F+++     +N    E
Sbjct: 48  CSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNE 105

Query: 144 ELTLLHSA 151
               LH+A
Sbjct: 106 GWIPLHAA 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.8 bits (125), Expect = 9e-09
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 29/132 (21%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
                L  ++  G+  +V  I      I    +        + +DEG T LHNAV   H 
Sbjct: 36  LPLALLLDSSLEGEFDLVQRI------IYEVDDPS------LPNDEGITALHNAVCAGHT 83

Query: 90  NVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ--RPESLNHR 140
            +V+ LV         D        +   TPL  A   +   +  F+++      ++ + 
Sbjct: 84  EIVKFLVQFGVNVNAAD--------SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135

Query: 141 LPEELTLLHSAV 152
             +        +
Sbjct: 136 DMQTAADKCEEM 147

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 22/106 (20%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G+  L    R       S        I +G   +        +      L ++      +
Sbjct: 5   GQVSLPPGKRTNLRKTGSER------IAHGMRVK-------FNPLPLALLLDSSLEGEFD 51

Query: 91  VVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           +V+ ++ +            N+   T L  A+ +  T+I  F++  
Sbjct: 52  LVQRIIYE-----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 15/109 (13%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            N+ +G T LH A   G   IV   L     +  G            D +G TPLH A  
Sbjct: 66  PND-EGITALHNAVCAGHTEIV-KFL-----VQFGVNVN------AADSDGWTPLHCAAS 112

Query: 86  NKHENVVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             +  V + LV+       + Y +          ++   T  + F+   
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 11/92 (11%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            ++  G TPLH AA   +  +   +++   A+   T S         D +        + 
Sbjct: 99  ADSD-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS---------DMQTAADKCEEME 148

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
             +    + L       +G +N      L   
Sbjct: 149 EGYTQCSQFLYGVQ-EKMGIMNKGVIYALWDY 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 73  DDEGNTPLHNAVRNKHENVVRMLVKKD-RIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
           +  G   L    R          +    R+     N      L  +      D+   II 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV---KFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 132 QRPESLNHRLPEELTLLHSAV 152
           +  +  +    E +T LH+AV
Sbjct: 59  EVDD-PSLPNDEGITALHNAV 78

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 26/112 (23%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           N + +  L  AA+ GD   V  +                      +   +TPLH A    
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-----------IEGRQSTPLHFAAGYN 53

Query: 88  HENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             +VV  L++       KD             PL  A      ++A  ++  
Sbjct: 54  RVSVVEYLLQHGADVHAKD--------KGGLVPLHNACSYGHYEVAELLVKH 97

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 49.3 bits (119), Expect = 4e-08
 Identities = 27/114 (23%), Positives = 37/114 (32%), Gaps = 28/114 (24%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                  TPLH AA     ++V   L     + +G +          D  G  PLHNA  
Sbjct: 38  IEGR-QSTPLHFAAGYNRVSVV-EYL-----LQHGADVH------AKDKGGLVPLHNACS 84

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
             H  V  +LVK        D          + TPL  A      +I   ++  
Sbjct: 85  YGHYEVAELLVKHGAVVNVAD--------LWKFTPLHEAAAKGKYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            + W   TPLH AA  G   I   +L     + +G +          + +GNTPL     
Sbjct: 104 ADLW-KFTPLHEAAAKGKYEICK-LL-----LQHGADPT------KKNRDGNTPLDLVKD 150

Query: 86  NKHENVVRMLVKK 98
               ++  +L   
Sbjct: 151 G-DTDIQDLLRGD 162

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 12/73 (16%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +      P+H AAR G    +  + +       G   +      + D  G  P+  A  
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHR------AGARLD------VCDAWGRLPVDLAEE 120

Query: 86  NKHENVVRMLVKK 98
             H ++ R L   
Sbjct: 121 QGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 13/73 (17%)

Query: 26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
                +  L  AA  G    V   L     +  G +          +  G  P+   + 
Sbjct: 7  MLGGSSDAGLATAAARGQVETV-RQL-----LEAGADPN------ALNRFGRRPIQVMMM 54

Query: 86 NKHENVVRMLVKK 98
               V  +L+  
Sbjct: 55 G-SAQVAELLLLH 66

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 9/51 (17%)

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIA 117
           +     +  L  A        VR L++      G     LN   + P+ + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEA-----GADPNALNRFGRRPIQVM 52

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 49.7 bits (120), Expect = 1e-08
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 13/73 (17%)

Query: 26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
          ++   G TPLH+AA+ G   IV  +L     +  G +            +GNTP H A +
Sbjct: 38 RSKD-GNTPLHLAAKNGHAEIVK-LL-----LAKGADVN------ARSKDGNTPEHLAKK 84

Query: 86 NKHENVVRMLVKK 98
          N H  +V++L  K
Sbjct: 85 NGHHEIVKLLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 49.7 bits (120), Expect = 1e-08
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 27/98 (27%)

Query: 27  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
            +  G TPLH AA+ G    V   L     ++ G +            +GNTPLH A +N
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVK-KL-----LSKGADVN------ARSKDGNTPLHLAAKN 52

Query: 87  KHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIA 117
            H  +V++L+        +             TP  +A
Sbjct: 53  GHAEIVKLLLAKGADVNARS--------KDGNTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 39.7 bits (94), Expect = 5e-05
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIA 117
               +GNTPLHNA +N H   V+ L+ K     G      +    TPL +A
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSK-----GADVNARSKDGNTPLHLA 49

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 13/74 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +  +G TPLH+AA  G   IV  +L     + NG +          D  G T    ++ 
Sbjct: 109 NDM-EGHTPLHLAAMFGHLEIVE-VL-----LKNGADVN------AQDKFGKTAFDISID 155

Query: 86  NKHENVVRMLVKKD 99
           N +E++  +L K +
Sbjct: 156 NGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 3e-08
 Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 27/112 (24%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           +  G TPLH+AA  G   IV  +L     + NG +          D  G TPL  A    
Sbjct: 44  DASGWTPLHLAAFNGHLEIVE-VL-----LKNGADVN------AVDHAGMTPLRLAALFG 91

Query: 88  HENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           H  +V +L+K        D            TPL +A      +I   ++  
Sbjct: 92  HLEIVEVLLKNGADVNAND--------MEGHTPLHLAAMFGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.9 bits (118), Expect = 5e-08
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 27/109 (24%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
               L  AAR G    V  IL     + NG +          D  G TPLH A  N H  
Sbjct: 14  LGKKLLEAARAGRDDEVR-IL-----MANGADVN------AEDASGWTPLHLAAFNGHLE 61

Query: 91  VVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           +V +L+         D        +A  TPL +A      +I   ++  
Sbjct: 62  IVEVLLKNGADVNAVD--------HAGMTPLRLAALFGHLEIVEVLLKN 102

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 28/147 (19%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           +         ++A       +   I      + + + +        TD +  T LH A  
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERI------LADKSLAT------RTDQDSRTALHWACS 49

Query: 86  NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
             H  +V  L+        KD        +A  +PL IA  +   +I   ++ +    +N
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKD--------DAGWSPLHIAASAGXDEIVKALLVKGAH-VN 100

Query: 139 HRLPEELTLLHSAVMRQNYGEPMIFIS 165
                  T LH A  +  +   ++ + 
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLE 127

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           E++  L  + + +   N  G TPLH AA      I   +L+                   
Sbjct: 87  EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD------------A 134

Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
            D    T +H A    +  +V +L+          +    TPL +A D    + A F++ 
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193

Query: 132 QRPESLNHRLPEELTLLHSA 151
           Q    +     EE T L  A
Sbjct: 194 QGAS-IYIENKEEKTPLQVA 212

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 28/112 (25%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
           K+ + G TPL++A   G   IV  +L     + NG +          D  G TPLH A  
Sbjct: 43  KDEY-GLTPLYLATAHGHLEIV-EVL-----LKNGADVN------AVDAIGFTPLHLAAF 89

Query: 86  NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 130
             H  +  +L+K       +D           +T   I+I +   D+A  + 
Sbjct: 90  IGHLEIAEVLLKHGADVNAQD--------KFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 3e-07
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
            +   G TPLH+AA +G   I   +L     + +G +          D  G T    ++ 
Sbjct: 76  VDAI-GFTPLHLAAFIGHLEIAE-VL-----LKHGADVN------AQDKFGKTAFDISIG 122

Query: 86  NKHENVVRMLVKKD 99
           N +E++  +L K +
Sbjct: 123 NGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.2 bits (111), Expect = 3e-07
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 27/109 (24%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
               L  AAR G    V  IL     + NG +          D+ G TPL+ A  + H  
Sbjct: 14  LGKKLLEAARAGQDDEV-RIL-----MANGADVN------AKDEYGLTPLYLATAHGHLE 61

Query: 91  VVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
           +V +L+         D            TPL +A      +IA  ++  
Sbjct: 62  IVEVLLKNGADVNAVD--------AIGFTPLHLAAFIGHLEIAEVLLKH 102

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 16/118 (13%)

Query: 30  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
            G  PLH A  +G   +    LK                L   D EG  PL  A+   + 
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGAD------------LGARDSEGRDPLTIAMETANA 314

Query: 90  NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 147
           ++V +L       +     A+             D +    D  PE L+ R  +  TL
Sbjct: 315 DIVTLLRLA---KMREAEAAQGQAGDETYLDIFRDFSLMASDD-PEKLSRRSHDLHTL 368

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 19/120 (15%)

Query: 3   QELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTE 62
           Q L      E+   L    S                +       V+          N   
Sbjct: 68  QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN--- 124

Query: 63  SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAI 118
                     D+ GNTPLH      +  +V+ LVK      G    Y +N  ++ L  A+
Sbjct: 125 -------IPVDEHGNTPLHWLTSIANLELVKHLVKH-----GSNRLYGDNMGESCLVKAV 172

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 9e-05
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 15/111 (13%)

Query: 11  HELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR 70
             L+  + ++ +   ++    +              +   L     I         ++L 
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII--------ANMLN 277

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKKD---RIPLGYLNNAEQTPLSIAI 118
             D  G+T L+ A R  + ++V  L+       I     N +   P+    
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVDFGA 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 36/220 (16%), Positives = 67/220 (30%), Gaps = 72/220 (32%)

Query: 1   MDQELPTTMDHELLNVLRRRDSL-LRKNNWKGETPLHIAAR-----------VGDPAIV- 47
           M Q+L   +D    +      ++ LR ++ + E    + ++           V +     
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 48  -----STILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH---ENVVRMLVKKD 99
                  IL     +T             T  +  T   +A    H   ++    L   +
Sbjct: 261 AFNLSCKIL-----LT-------------TRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 100 RIPL--GYLNNAEQT---------PLSIAIDSSLTDIACFIIDQ--RPESLNHRLPEELT 146
              L   YL+   Q          P  ++I      IA  I D     ++  H   ++LT
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSI------IAESIRDGLATWDNWKHVNCDKLT 356

Query: 147 --------LLHSAVMRQNYGEPMIF-----ISLNKCLSIV 173
                   +L  A  R+ +    +F     I     LS++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.98
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.98
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.8e-38  Score=208.74  Aligned_cols=150  Identities=23%  Similarity=0.319  Sum_probs=139.2

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      .-+.+++++|++.|++++.+|..|+||||+|+..++.+++++|++.|+++            +..+..|.||||+|+..|
T Consensus        14 ~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~------------~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A           14 NGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV------------NAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch------------hhhccCCCCHHHHHHHcC
Confidence            35789999999999999999999999999999999999999999999885            467889999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      +.+++++|++.|+++ +.++..|+||||+|++.++.+++++|+++| ++++..|..|+|||++|+..|+.+++++|+++|
T Consensus        82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999998 889999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cccC
Q 030660          168 KCLS  171 (173)
Q Consensus       168 ~~~~  171 (173)
                      |++.
T Consensus       160 A~ie  163 (169)
T 4gpm_A          160 GWLE  163 (169)
T ss_dssp             ----
T ss_pred             CCcC
Confidence            9875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=200.37  Aligned_cols=148  Identities=20%  Similarity=0.301  Sum_probs=130.9

Q ss_pred             HHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHH
Q 030660           12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV   91 (173)
Q Consensus        12 ~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~   91 (173)
                      +++++|++.|+++|.+|..|+||||+|+..|+.+++++|++.++++            ...+..|.||+|.|+..++.++
T Consensus        67 ~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~------------~~~~~~g~t~l~~a~~~~~~~~  134 (269)
T 4b93_B           67 KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA------------GARNADQAVPLHLACQQGHFQV  134 (269)
T ss_dssp             --------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc------------CccCCCCCCccccccccChHHH
Confidence            4788999999999999999999999999999999999999999885            4567789999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660           92 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  171 (173)
Q Consensus        92 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  171 (173)
                      +++|++.|+++ +.++..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus       135 ~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          135 VKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             HHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999988 888999999999999999999999999999 9999999999999999999999999999999999987


Q ss_pred             CC
Q 030660          172 IV  173 (173)
Q Consensus       172 ~~  173 (173)
                      ++
T Consensus       213 ~~  214 (269)
T 4b93_B          213 VL  214 (269)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.8e-33  Score=183.79  Aligned_cols=145  Identities=23%  Similarity=0.245  Sum_probs=137.2

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..++
T Consensus        25 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~   92 (169)
T 2y1l_E           25 GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV------------NAVDHAGMTPLRLAALFGH   92 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CccCCCCCCHHHHHHHcCC
Confidence            4688999999999999999999999999999999999999999999874            4577889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      .+++++|++.|+++ +..+..|.||||.|+..++.+++++|++++ ++++..|..|.||+++|+..|+.+++++|+++|
T Consensus        93 ~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           93 LEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999988 888999999999999999999999999999 999999999999999999999999999999986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.7e-33  Score=184.92  Aligned_cols=147  Identities=18%  Similarity=0.215  Sum_probs=136.4

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|.+++..+..|+||||+|+. |+.+++++|++.|+++            +..+..|.||||+|+..++
T Consensus        16 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A           16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP------------DLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             TCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCC
Confidence            46889999999999999999999999999999 9999999999999875            4577899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                      .+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++++..++..+..|.||||+|+..|+.+++++|+++||
T Consensus        83 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           83 LDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999988 88899999999999999999999999999944479999999999999999999999999999998


Q ss_pred             c
Q 030660          169 C  169 (173)
Q Consensus       169 ~  169 (173)
                      +
T Consensus       162 d  162 (162)
T 1ihb_A          162 G  162 (162)
T ss_dssp             -
T ss_pred             C
Confidence            6

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.4e-32  Score=193.69  Aligned_cols=161  Identities=22%  Similarity=0.251  Sum_probs=129.2

Q ss_pred             hHHHHHHHHhcccc---hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------
Q 030660           10 DHELLNVLRRRDSL---LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------   65 (173)
Q Consensus        10 ~~~~~~~l~~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------   65 (173)
                      +.+++++|++.|.+   ++.++..|+||||+|+..|+.+++++|+++|++++.....+.                     
T Consensus        21 ~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  100 (282)
T 1oy3_D           21 HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP  100 (282)
T ss_dssp             CHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSS
T ss_pred             CHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhcc
Confidence            45566666666655   556666666666666666666666666666666654443332                     


Q ss_pred             -----------------------------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 030660           66 -----------------------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK   98 (173)
Q Consensus        66 -----------------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   98 (173)
                                                                     +..++..+..|.||||+|+..|+.+++++|++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  180 (282)
T 1oy3_D          101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA  180 (282)
T ss_dssp             CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence                                                           012455678899999999999999999999999


Q ss_pred             CCCCCCCCC-CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660           99 DRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus        99 ~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+++ +..+ ..|.||||+|+..++.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus       181 g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  253 (282)
T 1oy3_D          181 GADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE  253 (282)
T ss_dssp             TCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCC
T ss_pred             CCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCc
Confidence            9998 5555 45999999999999999999999999 99999999999999999999999999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.1e-32  Score=181.40  Aligned_cols=150  Identities=18%  Similarity=0.155  Sum_probs=140.1

Q ss_pred             cchHHHHHHHHhcccc-hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660            8 TMDHELLNVLRRRDSL-LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN   86 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~   86 (173)
                      .-+.++++++++.+.. ++..+..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..
T Consensus        12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A           12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP------------HILAKERESALSLASTG   79 (172)
T ss_dssp             TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------TCCCTTCCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------hhhcccCCCHHHHHHHC
Confidence            3467899999998876 8889999999999999999999999999999885            45778899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660           87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  166 (173)
Q Consensus        87 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  166 (173)
                      ++.+++++|++.++++ +..+..|.||||+|+..++.+++++|+++| ++++..+..|.|||++|+..|+.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           80 GYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            9999999999999988 888999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             ccccC
Q 030660          167 NKCLS  171 (173)
Q Consensus       167 ~~~~~  171 (173)
                      |+++.
T Consensus       158 ~~~~~  162 (172)
T 3v30_A          158 ILKLF  162 (172)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            98754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.9e-32  Score=180.84  Aligned_cols=149  Identities=16%  Similarity=0.132  Sum_probs=140.0

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      .-+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..+
T Consensus        13 ~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A           13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP------------QLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHcC
Confidence            34688999999999999999999999999999999999999999999875            456788999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      +.+++++|++.++++ +..+..|.||||+|+..++.+++++|+++| ++++..+..|.||+++|+..|+.+++++|++++
T Consensus        81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           81 YTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            999999999999998 888999999999999999999999999999 999999999999999999999999999999988


Q ss_pred             ccc
Q 030660          168 KCL  170 (173)
Q Consensus       168 ~~~  170 (173)
                      +..
T Consensus       159 ~~~  161 (167)
T 3v31_A          159 LKL  161 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.6e-32  Score=186.61  Aligned_cols=149  Identities=22%  Similarity=0.298  Sum_probs=128.2

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE   89 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~   89 (173)
                      +.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..++.
T Consensus        52 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~  119 (231)
T 3aji_A           52 HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV------------NAVNQNGCTPLHYAASKNRH  119 (231)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCCH
Confidence            567777777777777777777777777777777777777777777664            45678899999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660           90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      +++++|++.|.++ +..+..|.||+|.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       120 ~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  197 (231)
T 3aji_A          120 EIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS  197 (231)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            9999999999888 778889999999999999999999999988 88999999999999999999999999999999998


Q ss_pred             cCC
Q 030660          170 LSI  172 (173)
Q Consensus       170 ~~~  172 (173)
                      +++
T Consensus       198 ~~~  200 (231)
T 3aji_A          198 IYI  200 (231)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.7e-32  Score=189.69  Aligned_cols=161  Identities=18%  Similarity=0.198  Sum_probs=113.9

Q ss_pred             hHHHHHHHHhcccchhcc-CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------C
Q 030660           10 DHELLNVLRRRDSLLRKN-NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------E   66 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------~   66 (173)
                      +.+++++|++.|.+++.. +..|+||||+|+..|+.+++++|++.|++++.....+.                      .
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            556666666666665443 56666666666666666666666666666554444332                      1


Q ss_pred             ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCc
Q 030660           67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT  146 (173)
Q Consensus        67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  146 (173)
                      ..++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..+..|.|
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t  192 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREET  192 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred             CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCC
Confidence            134566778889999999989889999999988887 778888999999999999999999999888 888888889999


Q ss_pred             HHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          147 LLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       147 ~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |||+|+..|+.+++++|+++|+++++
T Consensus       193 pL~~A~~~~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          193 PLFLAAREGSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCccc
Confidence            99999999999999999999988765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.2e-31  Score=184.64  Aligned_cols=162  Identities=21%  Similarity=0.209  Sum_probs=138.6

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------C-
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------E-   66 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~-   66 (173)
                      -+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|++++.....+.                     + 
T Consensus        22 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  101 (237)
T 3b7b_A           22 GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ  101 (237)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             CcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            357788899999988888888899999999999999999999998888766554443                     1 


Q ss_pred             ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCc
Q 030660           67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT  146 (173)
Q Consensus        67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  146 (173)
                      ..++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||+|.|+..++.+++++|++++ ++++..+..|.|
T Consensus       102 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t  179 (237)
T 3b7b_A          102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDS  179 (237)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCCC
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCC
Confidence            345567778899999999999999999999998888 778888999999999999999999999888 889888999999


Q ss_pred             HHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          147 LLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       147 ~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |||+|+..|+.+++++|+++|+++++
T Consensus       180 ~L~~A~~~~~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          180 PLHIAARENRYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHHhCCHhHHHHHHHcCCCCCc
Confidence            99999999999999999999998865

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.6e-32  Score=184.03  Aligned_cols=145  Identities=19%  Similarity=0.170  Sum_probs=127.2

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE   89 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~   89 (173)
                      +.+++++|++.|.+++..+..|+||||+|+..++.+++++|++.|+++            +..+..|.||||+|+..++.
T Consensus        47 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~  114 (192)
T 2rfm_A           47 MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV------------NTKDFSGKTPLMWSIIFGYS  114 (192)
T ss_dssp             CGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------TCCCTTSCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCcHHHHHHHcCCH
Confidence            456788888888888888888999999999999999999999988774            45677889999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660           90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                      +++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..|..|.||+++|+..|+.+++++|+++|.
T Consensus       115 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          115 EMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFTEVRR  191 (192)
T ss_dssp             HHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhccC
Confidence            9999999998888 788888999999999999999999999888 8888888999999999999999999999988764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=100.00  E-value=1.5e-32  Score=175.78  Aligned_cols=134  Identities=13%  Similarity=0.061  Sum_probs=126.6

Q ss_pred             ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 030660           21 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  100 (173)
Q Consensus        21 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  100 (173)
                      +.+++..+..|.||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+. ++.+++++|++.++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~   68 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP------------NALNRFGRRPIQVMMM-GSAQVAELLLLHGA   68 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc------------CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC
Confidence            4678899999999999999999999999999999875            4577899999999999 99999999999999


Q ss_pred             CCCCCCCCC-CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660          101 IPLGYLNNA-EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       101 ~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      ++ +..+.. |.||||+|+..++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|++
T Consensus        69 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           69 EP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            98 888888 999999999999999999999999 99999999999999999999999999999999986

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.2e-31  Score=183.08  Aligned_cols=159  Identities=17%  Similarity=0.159  Sum_probs=92.2

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCc-ccCCCCCCCC---------------------C
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP-AITNGTESEP---------------------E   66 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~---------------------~   66 (173)
                      -+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.++ +++.....+.                     +
T Consensus        36 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  115 (223)
T 2f8y_A           36 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH  115 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC
Confidence            35778888888888888888888888888888888888888888876 3322222111                     2


Q ss_pred             ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCc
Q 030660           67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT  146 (173)
Q Consensus        67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  146 (173)
                      ..++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||+|.|+..++.+++++|++++ ++++..+..|.|
T Consensus       116 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t  193 (223)
T 2f8y_A          116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRL  193 (223)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCC
T ss_pred             CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCC
Confidence            222334444555555555555555555555554444 444444555555555555555555555554 445545555555


Q ss_pred             HHHHHHHhCCCcHHHHHHhcccc
Q 030660          147 LLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       147 ~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      |+++|+..++.+++++|+++|+.
T Consensus       194 ~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          194 PRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHHHHHhcchHHHHHHHHcCCC
Confidence            55555555555555555555443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=1.9e-31  Score=190.76  Aligned_cols=150  Identities=23%  Similarity=0.231  Sum_probs=137.5

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..|+
T Consensus        51 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------~~~~~~g~tpL~~A~~~g~  118 (299)
T 1s70_B           51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI------------NQPDNEGWIPLHAAASCGY  118 (299)
T ss_dssp             TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCcHHHHHHHcCC
Confidence            4788999999999999999999999999999999999999999999885            4577889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCC------------------------------------------------------------C
Q 030660           89 ENVVRMLVKKDRIPLGYLN------------------------------------------------------------N  108 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~------------------------------------------------------------~  108 (173)
                      .+++++|++.|+++ +..+                                                            .
T Consensus       119 ~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          119 LDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             HHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence            99999999998776 3333                                                            3


Q ss_pred             CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          109 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       109 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      .|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|+++++
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~  260 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA  260 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence            5788999999999999999999999 99999999999999999999999999999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=5.9e-32  Score=180.42  Aligned_cols=150  Identities=17%  Similarity=0.149  Sum_probs=140.8

Q ss_pred             chHHHHHHHHhc-ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      -+.+++++|++. +.+++..+..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..+
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A           16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI------------NVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             TCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcC
Confidence            467889999987 6789999999999999999999999999999999885            457788999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      +.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..+..|.||+++|+..++.+++++|+++|
T Consensus        84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999998 888999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cccCC
Q 030660          168 KCLSI  172 (173)
Q Consensus       168 ~~~~~  172 (173)
                      ++++.
T Consensus       162 ~~~~~  166 (179)
T 3f6q_A          162 QNLNR  166 (179)
T ss_dssp             CCCSC
T ss_pred             cCccc
Confidence            99864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=2.4e-31  Score=173.24  Aligned_cols=140  Identities=19%  Similarity=0.270  Sum_probs=131.4

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|.+++ .+..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..++
T Consensus        13 g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B           13 GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR------------DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             TCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT------------TCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCh
Confidence            46889999999999876 5888999999999999999999999999875            4577889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHH
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIF  163 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  163 (173)
                      .+++++|++.|+++ +..+..|.||+|+|+..++.+++++|+++| ++++..+..|.||+++|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999998 888999999999999999999999999999 99999999999999999999999999987

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=5.3e-31  Score=178.50  Aligned_cols=156  Identities=17%  Similarity=0.191  Sum_probs=89.1

Q ss_pred             hHHHHHHHHhccc-chhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------C
Q 030660           10 DHELLNVLRRRDS-LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------E   66 (173)
Q Consensus        10 ~~~~~~~l~~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------~   66 (173)
                      +.+.++.+++.+. +++..+..|+||||+|+..|+.+++++|++.|++++.....+.                      +
T Consensus        17 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~   96 (201)
T 3hra_A           17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT   96 (201)
T ss_dssp             CHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            4566666666655 7777777777888888877888888888877777543222211                      1


Q ss_pred             ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHhcCc-----HHHHHHHHhcCCCccccc
Q 030660           67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD-RIPLGYLNNAEQTPLSIAIDSSL-----TDIACFIIDQRPESLNHR  140 (173)
Q Consensus        67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~  140 (173)
                      ..++..+..|.||||+|+..++.+++++|++.+ .++ +..+..|.||||.|+..++     .+++++|+++| ++++..
T Consensus        97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~~~~~  174 (201)
T 3hra_A           97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIK  174 (201)
T ss_dssp             CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-CCTTCC
T ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC-CCCCcc
Confidence            122334445555555555555555555555555 333 4455555555555555444     55555555555 555555


Q ss_pred             CCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660          141 LPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus       141 ~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      |..|.||||+|+..|+.+++++|+++|
T Consensus       175 ~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          175 DNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            555555555555555555555555544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=3.7e-31  Score=183.05  Aligned_cols=153  Identities=24%  Similarity=0.254  Sum_probs=138.5

Q ss_pred             chHHHHHHHHhc-ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      -+.+++++|++. |.+++.++..|+||||+|+..|+.+++++|++.|++.....       ....+..|.||||+|+..|
T Consensus        14 g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------~~~~~~~g~t~L~~A~~~~   86 (232)
T 2rfa_A           14 NDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP-------MTSELYEGQTALHIAVINQ   86 (232)
T ss_dssp             TCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC-------CCSTTTTTCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc-------ccccCCCCcCHHHHHHHcC
Confidence            467899999997 99999999999999999999999999999999998753211       1356778999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCC-------------CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHh
Q 030660           88 HENVVRMLVKKDRIPLGYLNN-------------AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  154 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  154 (173)
                      +.+++++|++.|+++ +..+.             .|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..
T Consensus        87 ~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~  164 (232)
T 2rfa_A           87 NVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQ  164 (232)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTC
T ss_pred             CHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHc
Confidence            999999999999888 55544             7999999999999999999999999 99999999999999999999


Q ss_pred             CCCcHH----HHHHhccccc
Q 030660          155 QNYGEP----MIFISLNKCL  170 (173)
Q Consensus       155 ~~~~~~----~~ll~~~~~~  170 (173)
                      |+.+++    ++|+++|++.
T Consensus       165 ~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          165 PNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             SCHHHHHHHHHHHHHTTCSC
T ss_pred             CChHHHHHHHHHHHhcCCch
Confidence            999988    9999999976

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=3.6e-32  Score=188.75  Aligned_cols=155  Identities=19%  Similarity=0.165  Sum_probs=138.6

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.++++...      ..++..+..|.||||+|+..|+
T Consensus        56 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~~~~~~~g~t~L~~A~~~~~  129 (236)
T 1ikn_D           56 NQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH------SILKATNYNGHTCLHLASIHGY  129 (236)
T ss_dssp             TCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS------CGGGCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH------HHhhccCCCCCCHHHHHHHcCC
Confidence            3578899999999999999999999999999999999999999998764321      2245678889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCC-CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           89 ENVVRMLVKKDRIPLGYLNN-AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      .+++++|++.|+++ +..+. .|.||||+|+..++.+++++|+++| ++++..+..|.|||++|+..|+.+++++|+++|
T Consensus       130 ~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  207 (236)
T 1ikn_D          130 LGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  207 (236)
T ss_dssp             HHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHcc
Confidence            99999999999988 77776 8999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cccC
Q 030660          168 KCLS  171 (173)
Q Consensus       168 ~~~~  171 (173)
                      ++..
T Consensus       208 a~~~  211 (236)
T 1ikn_D          208 LENL  211 (236)
T ss_dssp             CGGG
T ss_pred             hhhh
Confidence            9753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.98  E-value=3.4e-31  Score=192.65  Aligned_cols=165  Identities=18%  Similarity=0.168  Sum_probs=133.9

Q ss_pred             cchHHHHHHHHhcccchhccCCC-CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWK-GETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------   65 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------   65 (173)
                      .-++++|++|+++|+++|.++.. |+||||+|+..|+.++|++|+++|++++.....+.                     
T Consensus        35 ~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (337)
T 4g8k_A           35 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSK  114 (337)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhc
Confidence            34789999999999999998764 99999999999999999999999998765443332                     


Q ss_pred             ---------------------------------Ccc----------ccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCC
Q 030660           66 ---------------------------------ESL----------LRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRI  101 (173)
Q Consensus        66 ---------------------------------~~~----------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~  101 (173)
                                                       +..          ....+..|.||||+|+..|+.+++++|++. |++
T Consensus       115 ~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad  194 (337)
T 4g8k_A          115 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD  194 (337)
T ss_dssp             TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC
T ss_pred             cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC
Confidence                                             111          112345678899999988888888877753 433


Q ss_pred             CC------------------------------------CCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCC
Q 030660          102 PL------------------------------------GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL  145 (173)
Q Consensus       102 ~~------------------------------------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  145 (173)
                      +.                                    +.++..|.||||.|+..++.+++++|++..+++++..|..|+
T Consensus       195 ~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~  274 (337)
T 4g8k_A          195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK  274 (337)
T ss_dssp             TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSC
T ss_pred             cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCC
Confidence            31                                    445567889999999999999999999865489999999999


Q ss_pred             cHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          146 TLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       146 t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ||||+|+..|+.+++++|+++|++++.
T Consensus       275 TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          275 TALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             BHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            999999999999999999999999875

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.98  E-value=5.8e-31  Score=181.46  Aligned_cols=162  Identities=17%  Similarity=0.172  Sum_probs=118.6

Q ss_pred             hHHHHHHHHhcccchhc-cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccC--C-CCCCCC--------------------
Q 030660           10 DHELLNVLRRRDSLLRK-NNWKGETPLHIAARVGDPAIVSTILKYAPAIT--N-GTESEP--------------------   65 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~-~~~~~~--------------------   65 (173)
                      +.+++++|++.+.++.. .+..|+||||+|+..|+.+++++|++.|++.+  . ....+.                    
T Consensus        14 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   93 (228)
T 2dzn_A           14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD   93 (228)
T ss_dssp             CHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHS
T ss_pred             CHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            34455555554444332 44555555555555555555555555552221  1 111111                    


Q ss_pred             -C--ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCC
Q 030660           66 -E--SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP  142 (173)
Q Consensus        66 -~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  142 (173)
                       +  ..++..+..|.||||.|+..++.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.++++++..|.
T Consensus        94 ~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A           94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred             CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence             1  234566788999999999999999999999999888 888889999999999999999999999988788999999


Q ss_pred             CCCcHHHHHHHhCCCcHHHHHH-hcccccCC
Q 030660          143 EELTLLHSAVMRQNYGEPMIFI-SLNKCLSI  172 (173)
Q Consensus       143 ~g~t~l~~a~~~~~~~~~~~ll-~~~~~~~~  172 (173)
                      .|.||||+|+..|+.+++++|+ ++|+++++
T Consensus       173 ~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~  203 (228)
T 2dzn_A          173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDL  203 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999 88998875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.98  E-value=7.8e-31  Score=182.11  Aligned_cols=161  Identities=18%  Similarity=0.201  Sum_probs=127.0

Q ss_pred             hHHHHHHHHh----cccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--------------------
Q 030660           10 DHELLNVLRR----RDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------   65 (173)
Q Consensus        10 ~~~~~~~l~~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------   65 (173)
                      +.+++++|++    .|.+++..+..|+||||+|+..|+.+++++|++.|++++.....+.                    
T Consensus        21 ~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  100 (241)
T 1k1a_A           21 NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD  100 (241)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3455555544    5556666666666666666666666666666666655554433332                    


Q ss_pred             -C----ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC-CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccc
Q 030660           66 -E----SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIIDQRPESLNH  139 (173)
Q Consensus        66 -~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  139 (173)
                       +    ..++..+..|.||||+|+..++.+++++|++.|+++ +..+ ..|.||+|.|+..++.+++++|+++| ++++.
T Consensus       101 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~  178 (241)
T 1k1a_A          101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNA  178 (241)
T ss_dssp             HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred             cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCC
Confidence             1    134567788999999999999999999999999988 5556 78999999999999999999999999 99999


Q ss_pred             cCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          140 RLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       140 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      .+..|.||||+|+..|+.+++++|+++|+++++
T Consensus       179 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=185.92  Aligned_cols=159  Identities=16%  Similarity=0.144  Sum_probs=126.6

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Ccc
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESL   68 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~   68 (173)
                      +.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++.|++++.....+.                     +..
T Consensus        71 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  150 (285)
T 3d9h_A           71 HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS  150 (285)
T ss_dssp             CHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence            56788888888888888888888888888888888888888888887765554443                     111


Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660           69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  148 (173)
Q Consensus        69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  148 (173)
                      ++ .+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||.|+..++.+++++|++.+ ++++. +..|.|||
T Consensus       151 ~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L  226 (285)
T 3d9h_A          151 VQ-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPL  226 (285)
T ss_dssp             SS-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTC-CBTTBCHH
T ss_pred             CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCC-CCCCC-CCCCCCHH
Confidence            22 2345788888888888888888888888877 777888888888888888888888888888 77774 77888888


Q ss_pred             HHHHHhCCCcHHHHHHhcccccCC
Q 030660          149 HSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       149 ~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+|+..|+.+++++|+++|+++++
T Consensus       227 ~~A~~~~~~~~v~~Ll~~gad~~~  250 (285)
T 3d9h_A          227 HAVVRTASEELACLLMDFGADTQA  250 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCC
Confidence            888888888888888888888765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2e-31  Score=175.55  Aligned_cols=145  Identities=21%  Similarity=0.214  Sum_probs=132.6

Q ss_pred             chHHHHHHHHh-cccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRR-RDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      -+.+++++|++ .+.+++..+..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..+
T Consensus        19 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A           19 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             TCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC------------CccCCCCCCHHHHHHHcC
Confidence            46788999987 56678888889999999999999999999999999875            467788999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      +.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..|..|.||+++|.. |+.+++++|+++|
T Consensus        87 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           87 HYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             cHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            999999999999998 888999999999999999999999999999 9999999999999999877 8999999999998


Q ss_pred             c
Q 030660          168 K  168 (173)
Q Consensus       168 ~  168 (173)
                      |
T Consensus       164 A  164 (165)
T 3twr_A          164 A  164 (165)
T ss_dssp             -
T ss_pred             c
Confidence            6

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.2e-30  Score=178.09  Aligned_cols=113  Identities=19%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE   89 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~   89 (173)
                      +.+++++|++.|.+++..+..|+||||+|+..++.+++++|++.|+++            +..+..|.||||+|+..++.
T Consensus       104 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~  171 (223)
T 2f8y_A          104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK------------DMQNNREETPLFLAAREGSY  171 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCcCHHHHHHHcCCH
Confidence            456777777777777777777777777777777777777777777664            56788999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCc
Q 030660           90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES  136 (173)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  136 (173)
                      +++++|+++|+++ +..+..|.||+++|++.++.+++++|+++| +.
T Consensus       172 ~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g-~~  216 (223)
T 2f8y_A          172 ETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYN-LV  216 (223)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CS
T ss_pred             HHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHHcC-CC
Confidence            9999999999998 888999999999999999999999999998 43

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=5.4e-30  Score=181.49  Aligned_cols=161  Identities=14%  Similarity=0.161  Sum_probs=128.9

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCC----------CCCC--------------
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGT----------ESEP--------------   65 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------~~~~--------------   65 (173)
                      +.+++++|+++|.+++..+..|+||||+|+..|+.+++++|++.|++++...          ..+.              
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence            4667777777777777777777777777777777777777777777665442          1111              


Q ss_pred             --------CccccccCCCCCcHHHHHHhcCC----HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHh-c
Q 030660           66 --------ESLLRITDDEGNTPLHNAVRNKH----ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID-Q  132 (173)
Q Consensus        66 --------~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~  132 (173)
                              +..++..+..|.||||.|+..+.    .+++++|++.|+++ +.++..|.||||.|+..++.+++++|++ .
T Consensus       164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  242 (285)
T 1wdy_A          164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence                    33445567788888888888888    78888888888887 7788889999999999999999999998 5


Q ss_pred             CCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          133 RPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       133 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      + ++++..|..|.||||+|+..|+.+++++|+++|+++++
T Consensus       243 g-~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          243 H-IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             S-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             C-CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence            6 88999999999999999999999999999999998875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=6.9e-31  Score=184.17  Aligned_cols=124  Identities=22%  Similarity=0.278  Sum_probs=63.6

Q ss_pred             HHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 030660           36 HIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS  115 (173)
Q Consensus        36 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  115 (173)
                      ..+...++.+++++|++.|+++..           ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus        28 ~~~~~~~~~~~v~~Ll~~g~~~~~-----------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   95 (253)
T 1yyh_A           28 NSEEEEDAPAVISDFIYQGASLHN-----------QTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLH   95 (253)
T ss_dssp             -----------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             chhhcCCChHHHHHHHHccCCccc-----------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            347788999999999999988643           23556666666666666666666666666666 555666666666


Q ss_pred             HHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660          116 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  171 (173)
Q Consensus       116 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  171 (173)
                      +|+..++.+++++|+++++.+++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        96 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  151 (253)
T 1yyh_A           96 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN  151 (253)
T ss_dssp             HHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC
Confidence            66666666666666666533566666666666666666666666666666666554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=6.4e-31  Score=192.99  Aligned_cols=162  Identities=19%  Similarity=0.195  Sum_probs=133.1

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC-----------------------
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-----------------------   65 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-----------------------   65 (173)
                      -+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|++++.......                       
T Consensus        31 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  110 (364)
T 3ljn_A           31 GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKER  110 (364)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhcccc
Confidence            468899999999999999999999999999999999999999999986544211110                       


Q ss_pred             Ccccc-----------------ccCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHH
Q 030660           66 ESLLR-----------------ITDDEGNTPLHNAVRNK--HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA  126 (173)
Q Consensus        66 ~~~~~-----------------~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  126 (173)
                      +...+                 ..+..|.||||+|+..|  +.+++++|++.|+++ +..+..|.||||+|+..++.+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v  189 (364)
T 3ljn_A          111 GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREAL  189 (364)
T ss_dssp             TCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHH
Confidence            11111                 16667888888888888  888888888888887 77788888888888888888888


Q ss_pred             HHHHhcCCCc-----ccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          127 CFIIDQRPES-----LNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       127 ~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ++|++++ ++     ++..+..|.||||+|+..|+.+++++|+++|+++++
T Consensus       190 ~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~  239 (364)
T 3ljn_A          190 DLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM  239 (364)
T ss_dssp             HHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            8888887 66     888888888888888888888888888888888765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=183.71  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=134.0

Q ss_pred             hHHHHHHHHhcccc--hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCc-ccCCCCCCCC---------------------
Q 030660           10 DHELLNVLRRRDSL--LRKNNWKGETPLHIAARVGDPAIVSTILKYAP-AITNGTESEP---------------------   65 (173)
Q Consensus        10 ~~~~~~~l~~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~---------------------   65 (173)
                      +.+.++.+++.+.+  ++.+|..|+||||+|+..|+.+++++|++.|+ +++.....+.                     
T Consensus        88 ~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~  167 (276)
T 4hbd_A           88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL  167 (276)
T ss_dssp             HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHH
Confidence            44566666666555  88899999999999999999999999999998 6665555443                     


Q ss_pred             -----CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHh-cCCCcccc
Q 030660           66 -----ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID-QRPESLNH  139 (173)
Q Consensus        66 -----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~  139 (173)
                           +......+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|++ .| ++++.
T Consensus       168 ~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~  245 (276)
T 4hbd_A          168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPS-CDISL  245 (276)
T ss_dssp             HHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT-CCTTC
T ss_pred             HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC-CCCcC
Confidence                 2233456778999999999999999999999999998 8889999999999999999999999998 67 99999


Q ss_pred             cCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660          140 RLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus       140 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      .|..|.|||++|+..|+.+++++|++++
T Consensus       246 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          246 TDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999999999999875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.5e-30  Score=171.11  Aligned_cols=126  Identities=24%  Similarity=0.344  Sum_probs=120.2

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 030660           33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT  112 (173)
Q Consensus        33 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  112 (173)
                      ++|+.|++.|+.++|++|++.|+++            +.++..|.||||+|+..+..+++++|++.|+++ +.++..|.|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv------------n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~T   72 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV------------NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRT   72 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCC
Confidence            4799999999999999999999985            467889999999999999999999999999998 889999999


Q ss_pred             HHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          113 PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       113 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |||+|+..++.+++++|+++| ++++..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        73 pLh~A~~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~  131 (169)
T 4gpm_A           73 PLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT  131 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            999999999999999999999 99999999999999999999999999999999999875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=6.5e-30  Score=186.02  Aligned_cols=98  Identities=23%  Similarity=0.251  Sum_probs=87.0

Q ss_pred             CCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHH
Q 030660           73 DDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLH  149 (173)
Q Consensus        73 ~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  149 (173)
                      +..|.||||.|+..   +..+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..|..|.||||
T Consensus       208 ~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~  285 (351)
T 3utm_A          208 PQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALH  285 (351)
T ss_dssp             TTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHH
Confidence            45677888888877   4467888888888877 778889999999999999999999999999 999999999999999


Q ss_pred             HHHHhCCCcHHHHHHhcccccCC
Q 030660          150 SAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       150 ~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +|+..|+.+++++|+++|+++++
T Consensus       286 ~A~~~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          286 RAALAGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCcHHHHHHHHHcCCCCCC
Confidence            99999999999999999999876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=9.3e-31  Score=180.85  Aligned_cols=148  Identities=22%  Similarity=0.199  Sum_probs=140.0

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|.+++.++..|.||||+|+..++.+++++|++.|+++            +..+..|.||||.|+..|+
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~  151 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP------------DAKDHYDATAMHRAAAKGN  151 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHcCC
Confidence            3678999999999999999999999999999999999999999999875            4567889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                      .+++++|++.++++ +..+..|.||+|+|+..++.+++++|+++| ++++..|..|.||+++|+..++.+++++|.++|+
T Consensus       152 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          152 LKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             HHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            99999999999988 888999999999999999999999999999 9999999999999999999999999999999998


Q ss_pred             cc
Q 030660          169 CL  170 (173)
Q Consensus       169 ~~  170 (173)
                      ++
T Consensus       230 ~i  231 (231)
T 3aji_A          230 SM  231 (231)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.9e-31  Score=185.04  Aligned_cols=160  Identities=14%  Similarity=0.031  Sum_probs=136.4

Q ss_pred             chHHHHHHHHhcccchhcc-----------CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC-CccccccCCCC
Q 030660            9 MDHELLNVLRRRDSLLRKN-----------NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-ESLLRITDDEG   76 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~-----------~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~~~~~~~~g   76 (173)
                      -+.+++++|++.|++++..           |..|+||||+|+..|+.+++++|++.|++++.....+. .......+.+|
T Consensus        57 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             TBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSC
T ss_pred             chHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCC
Confidence            4667899999999987743           36799999999999999999999999998755332110 11111223359


Q ss_pred             CcHHHHHHhcCCHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHh--cCcHH-------HHHHHHhcCCCcc-------
Q 030660           77 NTPLHNAVRNKHENVVRMLVK---KDRIPLGYLNNAEQTPLSIAID--SSLTD-------IACFIIDQRPESL-------  137 (173)
Q Consensus        77 ~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~-------  137 (173)
                      .||||+|+..|+.+++++|++   .|+++ +.++..|+||||+|+.  .++.+       ++++|+++| +++       
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~  214 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLE  214 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGG
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccc
Confidence            999999999999999999999   89988 8899999999999999  78888       999999999 888       


Q ss_pred             cccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          138 NHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       138 ~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      +..|..|.||||+|+..|+.+++++|+++|+..
T Consensus       215 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          215 EISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            889999999999999999999999999998753

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=8.3e-31  Score=185.52  Aligned_cols=161  Identities=16%  Similarity=0.136  Sum_probs=134.5

Q ss_pred             chHHHHHHHHhcccc-------hhc----cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--CccccccCCC
Q 030660            9 MDHELLNVLRRRDSL-------LRK----NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--ESLLRITDDE   75 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~-------~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~~~~~~~~~~   75 (173)
                      -+.+++++|++.|++       ++.    .+..|+||||+|+..|+.+++++|++.|++++.....+.  .......+..
T Consensus        68 g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  147 (273)
T 2pnn_A           68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF  147 (273)
T ss_dssp             TBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCS
T ss_pred             CChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccC
Confidence            567899999999876       333    567899999999999999999999999998754332110  0011122347


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHhcCc---------HHHHHHHHhcCCCccc-----
Q 030660           76 GNTPLHNAVRNKHENVVRMLVK---KDRIPLGYLNNAEQTPLSIAIDSSL---------TDIACFIIDQRPESLN-----  138 (173)
Q Consensus        76 g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~~-----  138 (173)
                      |.||||+|+..|+.+++++|++   .|+++ +.++..|.||||+|+..++         .+++++|+++| ++++     
T Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~  225 (273)
T 2pnn_A          148 GELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKL  225 (273)
T ss_dssp             CBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhccccccc
Confidence            9999999999999999999999   88988 8899999999999999887         78999999999 8886     


Q ss_pred             --ccCCCCCcHHHHHHHhCCCcHHHHHHhccc-ccC
Q 030660          139 --HRLPEELTLLHSAVMRQNYGEPMIFISLNK-CLS  171 (173)
Q Consensus       139 --~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~-~~~  171 (173)
                        ..|..|.||||+|+..|+.+++++|+++|+ +..
T Consensus       226 ~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~  261 (273)
T 2pnn_A          226 EEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE  261 (273)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred             ccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence              489999999999999999999999999999 543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.6e-30  Score=167.99  Aligned_cols=142  Identities=23%  Similarity=0.288  Sum_probs=132.0

Q ss_pred             chHHHHHHHHhc-ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      -+.+++++|++. +.+++..+..|+||||+ +..|+.+++++|++.|+++            +..+..|.||||+|+..|
T Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A           13 GDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP------------NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC------------CCcCCCCCCHHHHHHHcC
Confidence            467899999988 44899999999999999 9999999999999999885            467789999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  166 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  166 (173)
                      +.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.  ++++..|..|.|||++|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999988 88899999999999999999999999987  88999999999999999999999999999975

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=6.8e-31  Score=187.28  Aligned_cols=148  Identities=15%  Similarity=0.117  Sum_probs=123.9

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCC-CcHHHHHHhcCC
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG-NTPLHNAVRNKH   88 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~a~~~~~   88 (173)
                      +.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|+++            +..+..| .||||+|+..|+
T Consensus        74 ~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------~~~~~~g~~t~L~~A~~~~~  141 (285)
T 3kea_A           74 DTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL------------MFYGKTGWKTSFYHAVMLND  141 (285)
T ss_dssp             SCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG------------GGCSSSGGGSHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC------------CccCCCCCCCHHHHHHHcCC
Confidence            456777777777777777777777777777777777777777777764            4667778 799999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcH-HHHHHHhCCCcHHHHHHhcc
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL-LHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~ll~~~  167 (173)
                      .+++++|++.++....  ...|.||||.|+..++.+++++|+++| ++++..+..|.|| ||+|+..|+.+++++|+++|
T Consensus       142 ~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g  218 (285)
T 3kea_A          142 VSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD  218 (285)
T ss_dssp             HHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred             HHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999876521  127899999999999999999999998 9999999999997 99999999999999999999


Q ss_pred             cccCC
Q 030660          168 KCLSI  172 (173)
Q Consensus       168 ~~~~~  172 (173)
                      ++++.
T Consensus       219 ad~~~  223 (285)
T 3kea_A          219 INIYS  223 (285)
T ss_dssp             BCSTT
T ss_pred             CCCCC
Confidence            99875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.8e-30  Score=174.05  Aligned_cols=137  Identities=21%  Similarity=0.209  Sum_probs=128.5

Q ss_pred             cchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 030660           22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  101 (173)
Q Consensus        22 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  101 (173)
                      ..++.+|..|+||||+|+..|+.+++++|++.++++            +..+..|.||||+|+..++.+++++|++.|++
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   93 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------------EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN   93 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------------ccccccCccHHHHHHHcCCHHHHHHHHHCCCC
Confidence            346788999999999999999999999999999874            45678899999999999999999999999998


Q ss_pred             CCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          102 PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       102 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      + +..+..|.||||+|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        94 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A           94 V-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA  162 (192)
T ss_dssp             T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             C-CCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            8 888999999999999999999999999999 99999999999999999999999999999999999864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=5.8e-31  Score=184.98  Aligned_cols=161  Identities=16%  Similarity=0.079  Sum_probs=135.0

Q ss_pred             cchHHHHHHHHhcccc-----------hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--CccccccCC
Q 030660            8 TMDHELLNVLRRRDSL-----------LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--ESLLRITDD   74 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~~~~~~~~~   74 (173)
                      .-+.+++++|++.|++           ++..+..|+||||+|+..|+.+++++|++.|++++.......  .......+.
T Consensus        59 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  138 (260)
T 3jxi_A           59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY  138 (260)
T ss_dssp             TTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCC
T ss_pred             cCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccccc
Confidence            4567899999998865           334455899999999999999999999999998754332100  001112226


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHhcCc---------HHHHHHHHhcCCCcc-----
Q 030660           75 EGNTPLHNAVRNKHENVVRMLVK---KDRIPLGYLNNAEQTPLSIAIDSSL---------TDIACFIIDQRPESL-----  137 (173)
Q Consensus        75 ~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-----  137 (173)
                      .|.||||+|+..|+.+++++|++   .|+++ +.++..|+||||+|+..++         .+++++|+++| +++     
T Consensus       139 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~  216 (260)
T 3jxi_A          139 FGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTN  216 (260)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccc
Confidence            79999999999999999999999   88988 8899999999999998776         68999999999 888     


Q ss_pred             --cccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          138 --NHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       138 --~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                        +..|..|.||||+|+..|+.+++++|+++|++.
T Consensus       217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence              679999999999999999999999999998764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=6.7e-30  Score=191.58  Aligned_cols=161  Identities=19%  Similarity=0.311  Sum_probs=117.5

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Ccc
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESL   68 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~   68 (173)
                      +.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.|++++.....+.                     +..
T Consensus       191 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  270 (437)
T 1n11_A          191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN  270 (437)
T ss_dssp             CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence            34455555555555555555555555555555555555555555544433322221                     122


Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660           69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  148 (173)
Q Consensus        69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  148 (173)
                      .+..+..|.||||+|+..|+.+++++|+++|... +..+..|.||||.|+.+++.+++++|+++| ++++..+..|.|||
T Consensus       271 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L  348 (437)
T 1n11_A          271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPL  348 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHH
Confidence            3456778889999999999999999999988887 778888999999999999999999999888 88888888899999


Q ss_pred             HHHHHhCCCcHHHHHHhcccccCC
Q 030660          149 HSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       149 ~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+|+..|+.+++++|+++|+++++
T Consensus       349 ~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          349 HQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHCChHHHHHHHHHCcCCCCC
Confidence            999999999999999999988865

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=9.2e-30  Score=160.12  Aligned_cols=126  Identities=26%  Similarity=0.405  Sum_probs=119.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      +|+||||+|+..|+.+++++|++.|.++            +..+..|.||||.|+..++.+++++|++.++++ +..+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~   67 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN   67 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCC
Confidence            4899999999999999999999999874            456788999999999999999999999999988 888999


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      |.||+|.|+..++.+++++|++++ ++++..+..|.||+++|+..|+.+++++|+++|++
T Consensus        68 g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           68 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCcHHHHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999 99999999999999999999999999999999986

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=2e-29  Score=173.71  Aligned_cols=140  Identities=21%  Similarity=0.208  Sum_probs=107.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCcccCC-CCCCCC---------------------C--ccccc-cCCCCCcHHHHHHh
Q 030660           31 GETPLHIAARVGDPAIVSTILKYAPAITN-GTESEP---------------------E--SLLRI-TDDEGNTPLHNAVR   85 (173)
Q Consensus        31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~---------------------~--~~~~~-~~~~g~t~l~~a~~   85 (173)
                      |+||||+|+..|+.+++++|++.+++... ....+.                     +  ..+.. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            68999999999999999999999987644 222222                     2  22233 56677888888888


Q ss_pred             cCCHHHHHHHHhcC--CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHH
Q 030660           86 NKHENVVRMLVKKD--RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIF  163 (173)
Q Consensus        86 ~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  163 (173)
                      .|+.+++++|++.+  ++. +..+..|.||+|.|+..++.+++++|+++| ++++..+..|.||||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            88888888888876  555 666777888888888888888888888877 77888888888888888888888888888


Q ss_pred             Hhcc-cccCC
Q 030660          164 ISLN-KCLSI  172 (173)
Q Consensus       164 l~~~-~~~~~  172 (173)
                      +++| ++++.
T Consensus       160 l~~g~~~~~~  169 (228)
T 2dzn_A          160 CGLGKSAVNW  169 (228)
T ss_dssp             HTTTCCCSCC
T ss_pred             HhcCcccccC
Confidence            8888 66553

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=1.3e-29  Score=186.94  Aligned_cols=158  Identities=17%  Similarity=0.150  Sum_probs=116.9

Q ss_pred             HHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------C---ccc
Q 030660           14 LNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------E---SLL   69 (173)
Q Consensus        14 ~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~---~~~   69 (173)
                      ++.+++.|++++.+|..|+||||+|+..|+.+++++|++.|++++.....+.                     +   ..+
T Consensus       149 ~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  228 (373)
T 2fo1_E          149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI  228 (373)
T ss_dssp             HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred             HHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh
Confidence            4455577777777777778888888877888888888877777765554443                     1   234


Q ss_pred             cccCCCCCcHHHHHHhcC---CHHHHHHHHhcCCCCCCC--------CCCCCCCHHHHHHhcCcHHHHHHHHhcCCCccc
Q 030660           70 RITDDEGNTPLHNAVRNK---HENVVRMLVKKDRIPLGY--------LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN  138 (173)
Q Consensus        70 ~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  138 (173)
                      +..+..|.||||+|+..+   ..+++++|++.|+++ +.        .+..|.||||.|+..++.+++++|+++++++++
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n  307 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD  307 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc
Confidence            556777888888888776   677888888877766 32        455778888888888888888888876557788


Q ss_pred             ccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          139 HRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       139 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ..|..|.||||+|+..|+.+++++|+++|+++++
T Consensus       308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC
Confidence            8888888888888888888888888888887764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=1.4e-30  Score=170.23  Aligned_cols=134  Identities=14%  Similarity=0.048  Sum_probs=117.7

Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q 030660           24 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL  103 (173)
Q Consensus        24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  103 (173)
                      .+..+..|.||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+ .++.+++++|++.|+++ 
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-   70 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP------------NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-   70 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT------------TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-
Confidence            3456778999999999999999999999999875            457789999999985 89999999999999988 


Q ss_pred             CCCCCCCCC-HHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          104 GYLNNAEQT-PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       104 ~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +.++..|.| |||+|+..++.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred             CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence            888999999 999999999999999999999 99999999999999999999999999999999999864

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=2e-29  Score=175.01  Aligned_cols=133  Identities=26%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHHHHh----hCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 030660           24 LRKNNWKGETPLHIAARVGDPAIVSTILK----YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD   99 (173)
Q Consensus        24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~   99 (173)
                      ++.+|..|+||||+|+..|+.+++++|++    .+.+++.            .+..|.||||+|+..|+.+++++|++.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   69 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI------------YNNLRQTPLHLAVITTLPSVVRLLVTAG   69 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC------------CCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------ccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            45678999999999999999999999997    5666543            3444455555555555555555555544


Q ss_pred             CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCC----cccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          100 RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE----SLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       100 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      +++ +..+..|.||+|.|+..++.+++++|++.+ .    +++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        70 ~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  142 (241)
T 1k1a_A           70 ASP-MALDRHGQTAAHLACEHRSPTCLRALLDSA-APGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI  142 (241)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            444 344444444444444444444444444444 2    33444444444444444444444444444444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=6e-31  Score=182.55  Aligned_cols=148  Identities=26%  Similarity=0.253  Sum_probs=131.3

Q ss_pred             HHHHHHHhcc----cchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660           12 ELLNVLRRRD----SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus        12 ~~~~~l~~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      +++++|++.+    .+++..+..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..|
T Consensus        22 ~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~   89 (236)
T 1ikn_D           22 ALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP------------ELRDFRGNTPLHLACEQG   89 (236)
T ss_dssp             SSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS------------CCCCTTCCCHHHHHHHHT
T ss_pred             hHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcC
Confidence            3445555544    478999999999999999999999999999999875            457789999999999999


Q ss_pred             CHHHHHHHHhcCCCC-----CCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCC-CCCcHHHHHHHhCCCcHHH
Q 030660           88 HENVVRMLVKKDRIP-----LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP-EELTLLHSAVMRQNYGEPM  161 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~  161 (173)
                      +.+++++|++.+..+     .+..+..|.||||+|+..++.+++++|+++| ++++..+. .|.||||+|+..|+.++++
T Consensus        90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~  168 (236)
T 1ikn_D           90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVS  168 (236)
T ss_dssp             CHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999998653     3566778999999999999999999999999 99999987 9999999999999999999


Q ss_pred             HHHhcccccCC
Q 030660          162 IFISLNKCLSI  172 (173)
Q Consensus       162 ~ll~~~~~~~~  172 (173)
                      +|+++|+++++
T Consensus       169 ~Ll~~ga~~~~  179 (236)
T 1ikn_D          169 LLLKCGADVNR  179 (236)
T ss_dssp             HHHTTTCCSCC
T ss_pred             HHHHcCCCCCc
Confidence            99999999875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.9e-30  Score=181.13  Aligned_cols=156  Identities=22%  Similarity=0.208  Sum_probs=134.5

Q ss_pred             HHHHHHHhcccchhc----cCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660           12 ELLNVLRRRDSLLRK----NNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV   84 (173)
Q Consensus        12 ~~~~~l~~~g~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~   84 (173)
                      .+++++++.|.+++.    .+..|+||||+|+..   |+.+++++|++.|++++..... ........+..|.||||+|+
T Consensus        20 ~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~   98 (256)
T 2etb_A           20 GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL-VNAQCTDEFYQGHSALHIAI   98 (256)
T ss_dssp             THHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG-GGCCCCSTTTTTCCHHHHHH
T ss_pred             HHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh-cccccccccccCCCHHHHHH
Confidence            377888899999998    899999999999999   9999999999999886422100 00001123567999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCCCCCCC-------------CCCHHHHHHhcCcHHHHHHHHh---cCCCcccccCCCCCcHH
Q 030660           85 RNKHENVVRMLVKKDRIPLGYLNNA-------------EQTPLSIAIDSSLTDIACFIID---QRPESLNHRLPEELTLL  148 (173)
Q Consensus        85 ~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l  148 (173)
                      ..|+.+++++|++.|+++ +..+..             |.||||+|+..++.+++++|++   .| ++++..|..|+|||
T Consensus        99 ~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpL  176 (256)
T 2etb_A           99 EKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVL  176 (256)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHH
Confidence            999999999999999988 666665             9999999999999999999999   78 99999999999999


Q ss_pred             HHHHH--hCCCc-------HHHHHHhccccc
Q 030660          149 HSAVM--RQNYG-------EPMIFISLNKCL  170 (173)
Q Consensus       149 ~~a~~--~~~~~-------~~~~ll~~~~~~  170 (173)
                      |+|+.  .++.+       ++++|+++|+++
T Consensus       177 h~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          177 HALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            99999  67777       999999999987

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=4.4e-30  Score=188.54  Aligned_cols=148  Identities=16%  Similarity=0.197  Sum_probs=136.7

Q ss_pred             chHHHHHHHHhc----ccchhc-----------------cCCCCCcHHHHHHHhC--CHHHHHHHHhhCcccCCCCCCCC
Q 030660            9 MDHELLNVLRRR----DSLLRK-----------------NNWKGETPLHIAARVG--DPAIVSTILKYAPAITNGTESEP   65 (173)
Q Consensus         9 ~~~~~~~~l~~~----g~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~   65 (173)
                      -+.+++++|++.    |.+++.                 .+..|+||||+|+..|  +.+++++|++.|+++        
T Consensus        95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~--------  166 (364)
T 3ljn_A           95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP--------  166 (364)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT--------
T ss_pred             CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC--------
Confidence            357788888887    777776                 8889999999999999  999999999999885        


Q ss_pred             CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC-----CCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCccccc
Q 030660           66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI-----PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHR  140 (173)
Q Consensus        66 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  140 (173)
                          +..+..|.||||+|+..|+.+++++|++.+++     . +..+..|.||||+|+..++.+++++|+++| ++++..
T Consensus       167 ----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~  240 (364)
T 3ljn_A          167 ----TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNME  240 (364)
T ss_dssp             ----TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCC
T ss_pred             ----cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Confidence                46778999999999999999999999999888     6 788899999999999999999999999999 999999


Q ss_pred             CCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          141 LPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       141 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      |..|.||||+|+..|+.+++++|+++|+++
T Consensus       241 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             CCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            999999999999999999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.8e-31  Score=185.90  Aligned_cols=145  Identities=20%  Similarity=0.194  Sum_probs=128.4

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE   89 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~   89 (173)
                      +.+++++|++.|++++..+..|.||+++|+..++.+++++|++.|+++            +..+..|.||||+|+..|+.
T Consensus        98 ~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~------------n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           98 RADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP------------NKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             CTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------------CCCCTTCCCHHHHHHHTTCG
T ss_pred             cHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHCCCH
Confidence            567899999999999999999999999999999999999999999885            46788999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC-CcHHHHHHhccc
Q 030660           90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN-YGEPMIFISLNK  168 (173)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~ll~~~~  168 (173)
                      +++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++| ++++..|..|+||||+|++.+. .++++++.+.++
T Consensus       166 ~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          166 ELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA  243 (269)
T ss_dssp             GGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred             HHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence            9999999999998 889999999999999999999999999999 9999999999999999987664 344444444444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=6.2e-29  Score=186.34  Aligned_cols=162  Identities=20%  Similarity=0.201  Sum_probs=144.1

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Cc
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ES   67 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~   67 (173)
                      -+.+++++|+++|.+++..+..|.||||+|+..++.+++++|++.|++++.....+.                     +.
T Consensus       157 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  236 (437)
T 1n11_A          157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG  236 (437)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            357889999999999999999999999999999999999999999988766544443                     33


Q ss_pred             cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcH
Q 030660           68 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL  147 (173)
Q Consensus        68 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  147 (173)
                      .++..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||.|+..++.+++++|++++ ++++..+..|.||
T Consensus       237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~  314 (437)
T 1n11_A          237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTP  314 (437)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCH
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-ccCCCCCCCCCCH
Confidence            44667788999999999999999999999999888 888899999999999999999999999999 9999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHhcccccCC
Q 030660          148 LHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       148 l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ||+|+..|+.+++++|+++|++++.
T Consensus       315 L~~A~~~g~~~~v~~Ll~~gad~n~  339 (437)
T 1n11_A          315 LHVASHYGNIKLVKFLLQHQADVNA  339 (437)
T ss_dssp             HHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.8e-30  Score=188.36  Aligned_cols=151  Identities=19%  Similarity=0.121  Sum_probs=132.6

Q ss_pred             hHHHHHHHHhcccchhc-cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660           10 DHELLNVLRRRDSLLRK-NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      ..+++++|++.|.+++. ++..|+||||+|+..|+.++|++|+++|+++            +..+..|.||||+|+..|+
T Consensus       109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~------------n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR------------LYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TBCCTTCCCHHHHHHHSSH
T ss_pred             HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHhcc
Confidence            35688888999999999 8999999999999999999999999999885            4678899999999999988


Q ss_pred             ---HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHh----cCcHHHHHHHHhcCCC--------------------------
Q 030660           89 ---ENVVRMLVKKDRIPLGYLNNAEQTPLSIAID----SSLTDIACFIIDQRPE--------------------------  135 (173)
Q Consensus        89 ---~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~~~~--------------------------  135 (173)
                         .+++..|++.+....+..+..|+||||+|+.    .++.+++++|++.+ .                          
T Consensus       177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~-~~~~~~~~~~~i~~~~~~~g~~~~~~~  255 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL-MGWIVKKQNRPIQSGTNEKESKPNDKN  255 (327)
T ss_dssp             HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH-HHHHHHGGGCCEEEC------------
T ss_pred             cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH-HHHHhcccchHHHhhhhcccCCccccc
Confidence               5677777776533337889999999999999    88999999998763 2                          


Q ss_pred             -------------------cccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCCC
Q 030660          136 -------------------SLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  173 (173)
Q Consensus       136 -------------------~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~  173 (173)
                                         +++..|..|+||||+|+..|+.+++++|+++|+++++.
T Consensus       256 ~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          256 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             ----CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             ccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence                               47888999999999999999999999999999998763

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=3.8e-30  Score=179.09  Aligned_cols=149  Identities=17%  Similarity=0.133  Sum_probs=120.4

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -..+.++.++++|.+++.. ..|.||||.|+..|+.+++++|++.|+++            +..+..|.||||+|+..|+
T Consensus        16 ~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B           16 NLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP------------SLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC------------CCCCTTSCCHHHHHHHHTC
T ss_pred             hhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCC
Confidence            3567899999999999854 67899999999999999999999999875            4678899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCC-cHHHHH--HHhCCCcHHHHHHh
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL-TLLHSA--VMRQNYGEPMIFIS  165 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~~ll~  165 (173)
                      .+++++|++.|+++ +.++..|.||||+|+..++.+++++|+++| ++++..+..|. ||+|+|  +..|+.+++++|++
T Consensus        83 ~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           83 TEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             HHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            99999999999998 889999999999999999999999999999 99999987777 999999  78899999999999


Q ss_pred             cccccCC
Q 030660          166 LNKCLSI  172 (173)
Q Consensus       166 ~~~~~~~  172 (173)
                      +|+++++
T Consensus       161 ~~a~~~~  167 (239)
T 1ycs_B          161 VQEKMGI  167 (239)
T ss_dssp             HHHHTTT
T ss_pred             hhhcccc
Confidence            9998765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=3.8e-29  Score=178.27  Aligned_cols=144  Identities=19%  Similarity=0.152  Sum_probs=100.4

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      ...++.++|.+.  +++.+|..|+||||+|+..|+.+++++|++.|++++.            .  .|.||||+|+..|+
T Consensus        11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~--~g~t~L~~A~~~g~   74 (285)
T 3kea_A           11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL------------L--ENEFPLHQAATLED   74 (285)
T ss_dssp             CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC------------C--TTCCHHHHHTTSSS
T ss_pred             CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------------C--CCCCHHHHHHHcCC
Confidence            344555555554  4788888899999999999999999999998887543            2  36667777776666


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCC-CcHHHHHHHhCCCcHHHHHHhcc
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE-LTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      .+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..+..| .||||+|+..|+.+++++|+++|
T Consensus        75 ~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           75 TKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             CHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            66777777666666 556666667777777666667777776666 6666666666 56666666666666666666666


Q ss_pred             ccc
Q 030660          168 KCL  170 (173)
Q Consensus       168 ~~~  170 (173)
                      ++.
T Consensus       153 ~~~  155 (285)
T 3kea_A          153 PST  155 (285)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=1.6e-29  Score=161.58  Aligned_cols=126  Identities=22%  Similarity=0.201  Sum_probs=117.4

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660           28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      ...+.||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..++.+++++|++.|+++ +..+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d   77 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV------------NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVD   77 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCC
Confidence            445789999999999999999999999875            467788999999999999999999999999988 8889


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660          108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus       108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      ..|.||||+|+..++.+++++|++++ ++++..|..|.|||++|+..|+.+++++|+++|
T Consensus        78 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           78 AIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999 999999999999999999999999999999986

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-28  Score=174.21  Aligned_cols=161  Identities=19%  Similarity=0.199  Sum_probs=110.7

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Ccc
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESL   68 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~   68 (173)
                      +.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++.....+.                     +..
T Consensus        51 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  130 (285)
T 1wdy_A           51 REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN  130 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            56777777777777777777777888888877777888888777777654443332                     111


Q ss_pred             cccc----------CCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHhcCc----HHHHHHHHhcC
Q 030660           69 LRIT----------DDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSL----TDIACFIIDQR  133 (173)
Q Consensus        69 ~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~  133 (173)
                      ++..          +..|.||||.|+..|+.+++++|++. +.++ +..+..|.||+|.|+..++    .+++++|+++|
T Consensus       131 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g  209 (285)
T 1wdy_A          131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHG  209 (285)
T ss_dssp             TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT
T ss_pred             cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcC
Confidence            1111          45566777777777777777777765 5555 6666677777777777666    66777777777


Q ss_pred             CCcccccCCCCCcHHHHHHHhCCCcHHHHHHh-cccccCC
Q 030660          134 PESLNHRLPEELTLLHSAVMRQNYGEPMIFIS-LNKCLSI  172 (173)
Q Consensus       134 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~-~~~~~~~  172 (173)
                       ++++..+..|.||||+|+..|+.+++++|++ .|++++.
T Consensus       210 -~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~  248 (285)
T 1wdy_A          210 -ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND  248 (285)
T ss_dssp             -CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred             -CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc
Confidence             7777777777777777777777777777777 6766653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=4.4e-29  Score=184.05  Aligned_cols=159  Identities=18%  Similarity=0.148  Sum_probs=130.7

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhC---cccCCCCCCCC---------------------
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA---PAITNGTESEP---------------------   65 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~~---------------------   65 (173)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+   .+++.....+.                     
T Consensus       178 ~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~L  257 (373)
T 2fo1_E          178 RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL  257 (373)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred             hHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHH
Confidence            567788888888888888888888888888888888888887776   45444333332                     


Q ss_pred             ---Cccc--------cccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           66 ---ESLL--------RITDDEGNTPLHNAVRNKHENVVRMLVKKD-RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        66 ---~~~~--------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                         +..+        +..+..|.||||+|+..|+.+++++|++.+ .++ +..+..|.||||+|+..++.+++++|+++|
T Consensus       258 l~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  336 (373)
T 2fo1_E          258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG  336 (373)
T ss_dssp             HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence               1111        235678999999999999999999999886 666 889999999999999999999999999999


Q ss_pred             CCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          134 PESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       134 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                       ++++..|..|.|||++|+..|+.+++++|++++++.
T Consensus       337 -ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          337 -ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             -CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             -CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence             999999999999999999999999999999999864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=5.4e-29  Score=164.19  Aligned_cols=129  Identities=24%  Similarity=0.239  Sum_probs=122.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      .|.||||.|+..|+.+++++|++.+.++            +..+..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~   68 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI------------NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKG   68 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCC
Confidence            5789999999999999999999999774            467889999999999999999999999999988 888999


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |.||+|.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        69 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  130 (167)
T 3v31_A           69 RESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI  130 (167)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999 99999999999999999999999999999999999865

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=9.6e-29  Score=179.72  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=134.1

Q ss_pred             hHHHHHHHHhcccchhcc----------CCCCCcHHHHHHHhCCHHHHHHHHh-hCcccCCCCCCCC-------------
Q 030660           10 DHELLNVLRRRDSLLRKN----------NWKGETPLHIAARVGDPAIVSTILK-YAPAITNGTESEP-------------   65 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~-------------   65 (173)
                      +.+++++++++|++++..          +..|.||||+|+..|+.++|++|++ .|++++.....+.             
T Consensus       137 ~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~  216 (337)
T 4g8k_A          137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  216 (337)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT
T ss_pred             cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc
Confidence            578899999999887754          4468999999999999999999996 4888876655543             


Q ss_pred             ------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhc
Q 030660           66 ------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ  132 (173)
Q Consensus        66 ------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  132 (173)
                                  +..++.++..|.||||+|+..+..+++++|+.. +.++ +.++..|.||||+|++.|+.+++++|+++
T Consensus       217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence                        334567788999999999999999999999986 5565 88999999999999999999999999999


Q ss_pred             CCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          133 RPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       133 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      | ++++.     .+||++|+..|+.+++++|+++||++++
T Consensus       296 G-Ad~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          296 G-ASTDC-----GDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             S-CSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             C-CCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            9 77764     5699999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.4e-30  Score=178.38  Aligned_cols=145  Identities=17%  Similarity=0.178  Sum_probs=124.5

Q ss_pred             HHHHHhcccchhccC---CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHH
Q 030660           14 LNVLRRRDSLLRKNN---WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN   90 (173)
Q Consensus        14 ~~~l~~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~   90 (173)
                      ++.|++.|.+++..+   ..+.||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..|+.+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~d~~g~tpLh~A~~~g~~~   68 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP------------SQPNEEGITALHNAICGANYS   68 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT------------TCCCTTSCCHHHHHHHTTCHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC------------CCCCCCCCCHHHHHHHcCCHH
Confidence            356778888776554   45678899999999999999999999875            467889999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccC-CCCCcHHHHH--HHhCCCcHHHHHHhcc
Q 030660           91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL-PEELTLLHSA--VMRQNYGEPMIFISLN  167 (173)
Q Consensus        91 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~ll~~~  167 (173)
                      ++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..+ ..|.||||+|  +..|+.+++++|+++|
T Consensus        69 ~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           69 IVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYREGYADCATYLADVE  146 (229)
T ss_dssp             HHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence            999999999988 888999999999999999999999999999 9999886 5999999999  9999999999999999


Q ss_pred             cccCC
Q 030660          168 KCLSI  172 (173)
Q Consensus       168 ~~~~~  172 (173)
                      +++++
T Consensus       147 a~~~~  151 (229)
T 2vge_A          147 QSMGL  151 (229)
T ss_dssp             HHTTT
T ss_pred             CCccc
Confidence            98865

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=9.7e-29  Score=176.13  Aligned_cols=158  Identities=15%  Similarity=0.188  Sum_probs=136.9

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--------------------Ccc
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------ESL   68 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------~~~   68 (173)
                      -+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.|++++.......                    +..
T Consensus       103 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  182 (285)
T 3d9h_A          103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN  182 (285)
T ss_dssp             TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            367899999999999999999999999999999999999999999988765443221                    445


Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660           69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  148 (173)
Q Consensus        69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  148 (173)
                      ++..+..|.||||+|+..++.+++++|++.|+++ + .+..|.||||+|+..++.+++++|+++| ++++..|..|+|||
T Consensus       183 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l  259 (285)
T 3d9h_A          183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPV  259 (285)
T ss_dssp             TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGG
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHH
Confidence            6678899999999999999999999999999988 5 3788999999999999999999999999 99999999999999


Q ss_pred             HHHHHhCCCcHHHHHHhc-ccccC
Q 030660          149 HSAVMRQNYGEPMIFISL-NKCLS  171 (173)
Q Consensus       149 ~~a~~~~~~~~~~~ll~~-~~~~~  171 (173)
                      ++|+  ++.+++++|+++ |+++.
T Consensus       260 ~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          260 ELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             GGSC--TTSHHHHHHHHHC-----
T ss_pred             HHhc--CccHHHHHHHHhhccCCC
Confidence            9998  568999999998 77653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=5.5e-30  Score=163.90  Aligned_cols=134  Identities=23%  Similarity=0.217  Sum_probs=117.9

Q ss_pred             ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 030660           21 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  100 (173)
Q Consensus        21 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  100 (173)
                      |+++ .++..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..++.+++++|++.++
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~   67 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP------------NVKDHAGWTPLHEACNHGHLKVVELLLQHKA   67 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5566 67889999999999999999999999999875            4677899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660          101 IPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       101 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      ++ +..+..|.||||+|+..++.+++++|+++| ++++..|..|.||+++|+..+..+++++|...+.+
T Consensus        68 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           68 LV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CT-TCCCGGGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             cc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            88 888999999999999999999999999999 99999999999999999999999999888776554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=6.8e-28  Score=166.86  Aligned_cols=161  Identities=19%  Similarity=0.134  Sum_probs=98.6

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCC-CC---------------------C
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES-EP---------------------E   66 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~---------------------~   66 (173)
                      -+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.+++....... +.                     +
T Consensus        20 g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g   99 (240)
T 3eu9_A           20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG   99 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcC
Confidence            4678899999999999999999999999999999999999999998876432221 10                     2


Q ss_pred             ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCc-HHHHHHHHhcCCCcccccCC-CC
Q 030660           67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL-TDIACFIIDQRPESLNHRLP-EE  144 (173)
Q Consensus        67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~-~g  144 (173)
                      ..++..+..|.||||.|+..++.+++++|++.++++ +..+..|.||+|.|+..+. .+++++|++.+ ++++..+. .|
T Consensus       100 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~-~~~~~~~~~~g  177 (240)
T 3eu9_A          100 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHK  177 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT-CCTTCCCTTTC
T ss_pred             CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcC-CCcchhhccCC
Confidence            222333444455555555555555555555554444 4444445555555553332 44444454444 44444443 55


Q ss_pred             CcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660          145 LTLLHSAVMRQNYGEPMIFISLNKCLS  171 (173)
Q Consensus       145 ~t~l~~a~~~~~~~~~~~ll~~~~~~~  171 (173)
                      .||||+|+..|+.+++++|+++|++++
T Consensus       178 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~  204 (240)
T 3eu9_A          178 NTALHWAVLAGNTTVISLLLEAGANVD  204 (240)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            566666666666666666666666554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.3e-29  Score=176.01  Aligned_cols=155  Identities=23%  Similarity=0.217  Sum_probs=131.2

Q ss_pred             HHHHHHhcccchhccC----CCCCcHHHHHH---HhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHh
Q 030660           13 LLNVLRRRDSLLRKNN----WKGETPLHIAA---RVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR   85 (173)
Q Consensus        13 ~~~~l~~~g~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~   85 (173)
                      +++++.+.|.+++..+    ..|+||||+|+   ..|+.+++++|++.|+++..... -........+..|.||||+|+.
T Consensus        24 ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~~~~d~~g~t~L~~A~~  102 (260)
T 3jxi_A           24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE-FINSPFRDVYYRGQTALHIAIE  102 (260)
T ss_dssp             HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH-HHTCCBCCSSEESBCHHHHHHH
T ss_pred             HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh-hhcccccccccCCCCHHHHHHH
Confidence            5667777999998776    67999999999   77999999999999876421000 0001123445689999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCC--------------CCCCCHHHHHHhcCcHHHHHHHHh---cCCCcccccCCCCCcHH
Q 030660           86 NKHENVVRMLVKKDRIPLGYLN--------------NAEQTPLSIAIDSSLTDIACFIID---QRPESLNHRLPEELTLL  148 (173)
Q Consensus        86 ~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l  148 (173)
                      .|+.+++++|++.|+++ +..+              ..|.||||+|+..++.+++++|++   .| ++++..|..|.|||
T Consensus       103 ~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-a~~~~~d~~g~TpL  180 (260)
T 3jxi_A          103 RRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ-ADLRRQDSRGNTVL  180 (260)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHH
T ss_pred             cCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCCcccCCCCCcHH
Confidence            99999999999999988 6666              689999999999999999999999   78 99999999999999


Q ss_pred             HHHHHhCC---------CcHHHHHHhccccc
Q 030660          149 HSAVMRQN---------YGEPMIFISLNKCL  170 (173)
Q Consensus       149 ~~a~~~~~---------~~~~~~ll~~~~~~  170 (173)
                      |+|+..++         .+++++|+++|+++
T Consensus       181 h~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          181 HALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            99999888         69999999999987

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=2.1e-28  Score=169.40  Aligned_cols=148  Identities=17%  Similarity=0.182  Sum_probs=117.4

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC-
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-   88 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-   88 (173)
                      +.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++            ++..+..|.||||.|+..+. 
T Consensus        88 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~------------~~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A           88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD------------VDMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHHCCS
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC------------ccccCCCCCcHHHHHHHhCCh
Confidence            34556666666666666666666666666666666666666665554            35678899999999997665 


Q ss_pred             HHHHHHHHhcCCCCCCCCCC-CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           89 ENVVRMLVKKDRIPLGYLNN-AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      .+++++|+..+.++ +..+. .|.||||.|+..++.+++++|+++| ++++..+..|.||+++|+..|+.+++++|++.+
T Consensus       156 ~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          156 VDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             STTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            78999999999998 66665 8999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cccC
Q 030660          168 KCLS  171 (173)
Q Consensus       168 ~~~~  171 (173)
                      +...
T Consensus       234 ~~~~  237 (240)
T 3eu9_A          234 QAKG  237 (240)
T ss_dssp             ----
T ss_pred             hccC
Confidence            8754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.3e-28  Score=174.30  Aligned_cols=155  Identities=23%  Similarity=0.207  Sum_probs=127.3

Q ss_pred             HHHHHhcccchh----ccCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660           14 LNVLRRRDSLLR----KNNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN   86 (173)
Q Consensus        14 ~~~l~~~g~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~   86 (173)
                      ++.+.+.+.+++    ..+..|+||||+|+..   |+.+++++|++.|++...... .........+..|.||||+|+..
T Consensus        33 l~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~-~i~~~~~~~d~~g~tpL~~A~~~  111 (273)
T 2pnn_A           33 LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ-FVNASYTDSYYKGQTALHIAIER  111 (273)
T ss_dssp             HHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH-HHTCCCCSTTTTTCCHHHHHHHT
T ss_pred             HHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH-HhhcccccccCCCCCHHHHHHHc
Confidence            333344666665    3578999999999987   999999999999976321000 00000113567899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCC--------------CCCCHHHHHHhcCcHHHHHHHHh---cCCCcccccCCCCCcHHH
Q 030660           87 KHENVVRMLVKKDRIPLGYLNN--------------AEQTPLSIAIDSSLTDIACFIID---QRPESLNHRLPEELTLLH  149 (173)
Q Consensus        87 ~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~  149 (173)
                      |+.+++++|++.|+++ +..+.              .|.||||+|+..++.+++++|++   .| ++++..|..|.||||
T Consensus       112 g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh  189 (273)
T 2pnn_A          112 RNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLH  189 (273)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHH
T ss_pred             CCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHH
Confidence            9999999999999988 66665              79999999999999999999999   78 999999999999999


Q ss_pred             HHHHhCC---------CcHHHHHHhcccccC
Q 030660          150 SAVMRQN---------YGEPMIFISLNKCLS  171 (173)
Q Consensus       150 ~a~~~~~---------~~~~~~ll~~~~~~~  171 (173)
                      +|+..|+         .+++++|+++|++++
T Consensus       190 ~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          190 ALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            9999998         799999999999875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=2.5e-28  Score=172.98  Aligned_cols=148  Identities=20%  Similarity=0.224  Sum_probs=102.3

Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcc---cCCCCCCCC---------------------CccccccCCCCCcH
Q 030660           24 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPA---ITNGTESEP---------------------ESLLRITDDEGNTP   79 (173)
Q Consensus        24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~---------------------~~~~~~~~~~g~t~   79 (173)
                      ++.+|..|+||||+|+..|+.+++++|++.|++   ++.....+.                     +..++..+..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            467889999999999999999999999999887   333333332                     33344555566666


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCC----------------------------------------------CCCCCCCCCCH
Q 030660           80 LHNAVRNKHENVVRMLVKKDRIP----------------------------------------------LGYLNNAEQTP  113 (173)
Q Consensus        80 l~~a~~~~~~~~~~~Ll~~~~~~----------------------------------------------~~~~~~~g~t~  113 (173)
                      ||+|+..++.+++++|++.++..                                              .+..+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            66666666666666666554331                                              13445566777


Q ss_pred             HHHHHhcCcHHHHHHHHhcCCCcccccCCC-CCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          114 LSIAIDSSLTDIACFIIDQRPESLNHRLPE-ELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       114 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ||+|+..++.+++++|+++| ++++..+.. |.||||+|+..|+.+++++|+++|+++++
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~  220 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA  220 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            77777777777777777777 667766643 77777777777777777777777777654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.3e-28  Score=161.61  Aligned_cols=131  Identities=24%  Similarity=0.222  Sum_probs=121.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660           28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      ...+.++|+.|++.|+.+++++|++.|+++            +..+..|.||||+|+..|+.+++++|++.|+++ +..+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~   77 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV------------NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVD   77 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccC
Confidence            345678999999999999999999999875            457789999999999999999999999999988 8889


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ..|.||||.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        78 ~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  141 (169)
T 2y1l_E           78 HAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA  141 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999 99999999999999999999999999999999999864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.8e-28  Score=159.59  Aligned_cols=126  Identities=21%  Similarity=0.247  Sum_probs=118.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCC
Q 030660           32 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ  111 (173)
Q Consensus        32 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  111 (173)
                      .++|+.|+..|+.+++++|++.|.+.             ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   68 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-------------TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-------------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCC
Confidence            57999999999999999999999864             24778999999999999999999999999988 88899999


Q ss_pred             CHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          112 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       112 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ||||.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        69 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  128 (153)
T 1awc_B           69 TPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CHHHHHHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            9999999999999999999999 99999999999999999999999999999999999865

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=9.2e-28  Score=166.37  Aligned_cols=149  Identities=23%  Similarity=0.311  Sum_probs=117.5

Q ss_pred             chhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------CccccccCCCCCcHHH
Q 030660           23 LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESLLRITDDEGNTPLH   81 (173)
Q Consensus        23 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~~~~~~~~g~t~l~   81 (173)
                      +++..+..|.||||+|+..|+.+++++|++.|++++.....+.                     +..++..+..|.||||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            5677889999999999999999999999999998876554443                     3344556677788888


Q ss_pred             HHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHH
Q 030660           82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPM  161 (173)
Q Consensus        82 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  161 (173)
                      .|+..|+.+++++|++.+....+..+..|.||+|.|+..++.+++++|+++| ++++..+..|.||||+|+..|+.++++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence            8888888888888887774333667777888888888888888888888777 777777778888888888888888888


Q ss_pred             HHHhcccccCC
Q 030660          162 IFISLNKCLSI  172 (173)
Q Consensus       162 ~ll~~~~~~~~  172 (173)
                      +|+++|++++.
T Consensus       162 ~Ll~~g~~~~~  172 (237)
T 3b7b_A          162 ILLAAKCDLHA  172 (237)
T ss_dssp             HHHTTTCCTTC
T ss_pred             HHHHcCCCCCC
Confidence            88888877654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=2.3e-28  Score=160.86  Aligned_cols=133  Identities=20%  Similarity=0.186  Sum_probs=120.9

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660           27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL  106 (173)
Q Consensus        27 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  106 (173)
                      .+..|.+||+.|+..|+.+++++|++.+...           ....+..|.||||+|+..++.+++++|++.|+++ +..
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~   71 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-----------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAK   71 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-----------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-----------ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-Ccc
Confidence            3567889999999999999999999865421           2356778999999999999999999999999988 888


Q ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          107 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +..|.||||+|+..++.+++++|++++ ++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  136 (165)
T 3twr_A           72 DKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK  136 (165)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            999999999999999999999999999 99999999999999999999999999999999999875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=1.3e-27  Score=173.87  Aligned_cols=150  Identities=19%  Similarity=0.261  Sum_probs=126.5

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..|+
T Consensus        69 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~  136 (351)
T 3utm_A           69 NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV------------NAMDLWQFTPLHEAASKNR  136 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHcCC
Confidence            3567888888888888888888888888888888888888888887764            4567788999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCC------------------------------------------------------CCCCCCHH
Q 030660           89 ENVVRMLVKKDRIPLGYL------------------------------------------------------NNAEQTPL  114 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~------------------------------------------------------~~~g~t~l  114 (173)
                      .+++++|++.|+++ +..                                                      +..|.||+
T Consensus       137 ~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L  215 (351)
T 3utm_A          137 VEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL  215 (351)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHH
T ss_pred             HHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHH
Confidence            99999999988776 332                                                      34577889


Q ss_pred             HHHHhc---CcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          115 SIAIDS---SLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       115 ~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |.|+..   +..+++++|++.+ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus       216 ~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~  275 (351)
T 3utm_A          216 HCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA  275 (351)
T ss_dssp             HHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            988888   5678999999988 89999999999999999999999999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=6.2e-28  Score=159.82  Aligned_cols=129  Identities=21%  Similarity=0.194  Sum_probs=119.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCC
Q 030660           31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE  110 (173)
Q Consensus        31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  110 (173)
                      +.+|||.|+..|+.+++++|++.+...           ++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g   69 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNL-----------VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKER   69 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGG-----------GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCccc-----------ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccC
Confidence            468999999999999999999998652           3567889999999999999999999999999988 8889999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          111 QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       111 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      .||||.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           70 ESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            99999999999999999999999 99999999999999999999999999999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=3.4e-29  Score=168.16  Aligned_cols=147  Identities=12%  Similarity=0.024  Sum_probs=126.4

Q ss_pred             hHHHHHHHHhcccchhccC-CCCCcHHHHHHHhCCH----HHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660           10 DHELLNVLRRRDSLLRKNN-WKGETPLHIAARVGDP----AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV   84 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~-~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~   84 (173)
                      +.+.++.+++.+  ++..+ ..|+||||+|+..++.    +++++|++.|+++            +.++..|+||||+|+
T Consensus        18 ~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv------------n~~d~~g~TpLh~a~   83 (186)
T 3t8k_A           18 TYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI------------KSRTKEGTTLFFPLF   83 (186)
T ss_dssp             CHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS------------SCCCTTCCCTHHHHH
T ss_pred             CHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC------------CCCCCCCCcHHHHHH
Confidence            455666666655  34555 6799999999999975    5999999999986            467889999999999


Q ss_pred             hcCC------HHHHHHHHhcCCCCCCCCCCCCC-CHHHHHHhcC-----cHHHHHHHHh-cCCCcccccCCCCCcHHHHH
Q 030660           85 RNKH------ENVVRMLVKKDRIPLGYLNNAEQ-TPLSIAIDSS-----LTDIACFIID-QRPESLNHRLPEELTLLHSA  151 (173)
Q Consensus        85 ~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a  151 (173)
                      ..++      .+++++|+++|+++ +.+|..|. ||||+|+..+     ..+++++|++ +| ++++..|..|+||||+|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHH
Confidence            9886      47899999999999 89999999 9999999944     4579999999 88 99999999999999999


Q ss_pred             HHhCCCcHHHHHHhcccccCC
Q 030660          152 VMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       152 ~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +..|+.+++++|+++.+..++
T Consensus       162 ~~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHHHHHHhc
Confidence            999999999999988766543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=9.9e-28  Score=159.89  Aligned_cols=131  Identities=23%  Similarity=0.242  Sum_probs=118.9

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCC
Q 030660           29 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN  108 (173)
Q Consensus        29 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (173)
                      ..+.++|+.|+..|+.+++++|++.+...           ++..+..|.||||+|+..++.+++++|++.|+++ +..+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~   70 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEND-----------LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNR   70 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccc-----------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC
Confidence            35789999999999999999999985331           3567889999999999999999999999999988 88899


Q ss_pred             CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          109 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       109 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      .|.||||+|+..++.+++++|++++ ++++..|..|.||||+|+..|+.+++++|+++|+++++
T Consensus        71 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           71 GDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            9999999999999999999999999 99999999999999999999999999999999999865

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=1.7e-27  Score=170.26  Aligned_cols=153  Identities=16%  Similarity=0.135  Sum_probs=132.5

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCcc--------------------
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL--------------------   68 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~--------------------   68 (173)
                      -+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|++++.....+...+                    
T Consensus        84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~  163 (299)
T 1s70_B           84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcC
Confidence            468899999999999999999999999999999999999999999999876665553110                    


Q ss_pred             ----------------------------ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhc
Q 030660           69 ----------------------------LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS  120 (173)
Q Consensus        69 ----------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  120 (173)
                                                  ....+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~  242 (299)
T 1s70_B          164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHW  242 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             CCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhc
Confidence                                        0124567999999999999999999999999998 88899999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660          121 SLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  164 (173)
Q Consensus       121 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  164 (173)
                      ++.+++++|+++| ++++..|..|.||+++|+.. ..+.++.++
T Consensus       243 ~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~-~~~~l~~l~  284 (299)
T 1s70_B          243 GKEEACRILVENL-CDMEAVNKVGQTAFDVADED-ILGYLEELQ  284 (299)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSG-GGHHHHHHH
T ss_pred             CCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHH-HHHHHHHHH
Confidence            9999999999999 99999999999999999653 344444444

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.4e-27  Score=156.59  Aligned_cols=126  Identities=15%  Similarity=0.122  Sum_probs=117.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      ...||||.|+..|+.+++++|++.|.++            +..+..|.||||+|+. ++.+++++|++.|+++ +..+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~   69 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV------------NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRT   69 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT------------TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc------------cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCC
Confidence            4568999999999999999999998774            4677899999999999 9999999999999988 888999


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      |.||+|.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++.
T Consensus        70 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  129 (162)
T 1ihb_A           70 GFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN  129 (162)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC
Confidence            999999999999999999999999 999999999999999999999999999999999973

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=2.9e-28  Score=167.67  Aligned_cols=134  Identities=19%  Similarity=0.152  Sum_probs=114.7

Q ss_pred             hccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCC
Q 030660           25 RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPL  103 (173)
Q Consensus        25 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  103 (173)
                      +..+..|.||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..|+.+++++|++. ++++ 
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-  133 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV------------NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-  133 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCc------------cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-
Confidence            334667899999999999999999999999875            45778899999999999999999999998 7777 


Q ss_pred             CCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          104 GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       104 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +..+..|.||||+|+..++.+++++|+++| ++++..|..|.|||++|+..|+.++++.|+..|+...+
T Consensus       134 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          134 NQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            889999999999999999999999999999 99999999999999999999999999999999987654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.3e-27  Score=166.32  Aligned_cols=130  Identities=15%  Similarity=0.102  Sum_probs=91.8

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660           28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      +..|.||||.|++.++.+.++.|+++|++++             .+..|.||||.|+..|+.+++++|++.|+++ +..+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~-------------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d   67 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-------------FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPN   67 (239)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc-------------cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcC
Confidence            3468999999999999999999999998863             2356899999999999999999999999988 8889


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        68 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  131 (239)
T 1ycs_B           68 DEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA  131 (239)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence            99999999999999999999999999 99999999999999999999999999999999999875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=3.1e-27  Score=148.42  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=103.9

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660           27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL  106 (173)
Q Consensus        27 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  106 (173)
                      .+..|.||||+|+..|+.+++++|++.|.++            +..+..|.||||+|+..++.+++++|++.|+++ +.+
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~   69 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDV------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAP   69 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCT------------TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCC
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCc------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcC
Confidence            3457889999999999999999999999874            467788999999999999999999999999988 888


Q ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660          107 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  156 (173)
Q Consensus       107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  156 (173)
                      +..|.||||+|+..++.+++++|++++ ++++..|..|.||+++|...+.
T Consensus        70 d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           70 DKHHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCHHH
Confidence            999999999999999999999999999 9999999999999999954433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.9e-26  Score=150.30  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=115.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhC-cccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           31 GETPLHIAARVGDPAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        31 g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      +.||||.|+..|+.+++++|++.. .+            ++..+..|.||||+ +..|+.+++++|++.|+++ +..+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~   67 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTS   67 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCC
Confidence            468999999999999999999982 13            34678889999999 9999999999999999988 888999


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |.||||.|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++ ++++.
T Consensus        68 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~  128 (156)
T 1bd8_A           68 GTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR  128 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence            999999999999999999999999 99999999999999999999999999999998 77654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=1.9e-25  Score=151.07  Aligned_cols=143  Identities=15%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCc-ccCCCCCCCC---------------------CccccccCCCCCcHHHHHHhc
Q 030660           29 WKGETPLHIAARVGDPAIVSTILKYAP-AITNGTESEP---------------------ESLLRITDDEGNTPLHNAVRN   86 (173)
Q Consensus        29 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~---------------------~~~~~~~~~~g~t~l~~a~~~   86 (173)
                      ..+.||||.|+..|+.+.++.|++.+. +++.....+.                     +..++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            467899999999999999999999876 5443333322                     233344445555555555555


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC-----CcHHH
Q 030660           87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN-----YGEPM  161 (173)
Q Consensus        87 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~  161 (173)
                      ++.+++++|++.+....+..+..|.||+|.|+..++.+++++|+++++++++..+..|.||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            5555555555332222244555555555555555555555555555545555555555555555555555     55555


Q ss_pred             HHHhcccccC
Q 030660          162 IFISLNKCLS  171 (173)
Q Consensus       162 ~ll~~~~~~~  171 (173)
                      +|+++|++++
T Consensus       163 ~Ll~~ga~~~  172 (201)
T 3hra_A          163 LLMENGADQS  172 (201)
T ss_dssp             HHHHTTCCTT
T ss_pred             HHHHCCCCCC
Confidence            5555555554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=7e-27  Score=152.60  Aligned_cols=128  Identities=14%  Similarity=0.166  Sum_probs=104.5

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCc-HHHHHHhcC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT-PLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t-~l~~a~~~~   87 (173)
                      -+.+++++|++.|.+++..+..|+||||+|+ .|+.+++++|++.|+++            +..+..|.| |||+|+..|
T Consensus        23 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~------------~~~d~~g~ttpL~~A~~~~   89 (156)
T 1bi7_B           23 GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP------------NCADPATLTRPVHDAAREG   89 (156)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC------------CCCCTTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHHCC
Confidence            4678999999999999999999999999996 89999999999999875            467788998 999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA  151 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  151 (173)
                      +.+++++|++.|+++ +.++..|.||||+|+..++.+++++|+++| ++++..+..|.||.+.+
T Consensus        90 ~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           90 FLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             CHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence            999999999999998 888999999999999999999999999999 99999999999998744

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=4.5e-28  Score=167.69  Aligned_cols=141  Identities=20%  Similarity=0.136  Sum_probs=123.7

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..|+
T Consensus        32 g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~------------n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV------------NSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             TCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHcCC
Confidence            4678999999999999999999999999999999999999999999885            4677899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCC-CCCCCHHHHH--HhcCcHHHHHHHHhcCCCcc----------------------------
Q 030660           89 ENVVRMLVKKDRIPLGYLN-NAEQTPLSIA--IDSSLTDIACFIIDQRPESL----------------------------  137 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~~~~~----------------------------  137 (173)
                      .+++++|++.|+++ +..+ ..|.||||+|  +..++.+++++|++.| +++                            
T Consensus       100 ~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga  177 (229)
T 2vge_A          100 TVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGDELSFREGE  177 (229)
T ss_dssp             HHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGGEEEESSCBCCSSTTBCCBCTTC
T ss_pred             HHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCCchHHHHHHhhccccccCccccc
Confidence            99999999999999 5554 6999999999  8999999999999876 443                            


Q ss_pred             ----cccCCCCCcHHHHHHHhCCCcHHHHH
Q 030660          138 ----NHRLPEELTLLHSAVMRQNYGEPMIF  163 (173)
Q Consensus       138 ----~~~~~~g~t~l~~a~~~~~~~~~~~l  163 (173)
                          +..|..|.||||+|+..|+.++++..
T Consensus       178 ~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          178 SVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             EEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             cccccccCCCcccHHHHHHHcCCcceeehh
Confidence                33466678888888888887777653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=5e-27  Score=157.13  Aligned_cols=126  Identities=18%  Similarity=0.147  Sum_probs=111.3

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660           28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      +..|+||||+|+..|+.++++.|++ +.++            +..+..|.||||+|+..|+.+++++|++.|+++ +..+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~  106 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRD  106 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCC
Confidence            5578999999999999999999999 7764            467889999999999999999999999999998 6666


Q ss_pred             -CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660          108 -NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus       108 -~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                       ..|+||||+|+..++.+++++|+++| ++++..|..|.||||+|+..++.+..+.++..++
T Consensus       107 ~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~  167 (183)
T 3deo_A          107 MRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGR  167 (183)
T ss_dssp             SSSSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHH
T ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccCcccccHHHHHH
Confidence             88999999999999999999999999 9999999999999999998866555555554443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.94  E-value=5.5e-27  Score=170.07  Aligned_cols=133  Identities=17%  Similarity=0.125  Sum_probs=118.0

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCC---HHHHHHHHhhC-cccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGD---PAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAV   84 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~   84 (173)
                      -+.+++++|+++|++++.++..|+||||+|+..|+   .++++.|++.+ ++            ++..+..|+||||+|+
T Consensus       142 g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~------------~~~~d~~g~tpLh~A~  209 (327)
T 1sw6_A          142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC------------LILEDSMNRTILHHII  209 (327)
T ss_dssp             TCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG------------GGEECTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc------------ccCCCCCCCCHHHHHH
Confidence            36789999999999999999999999999999998   78888888887 43            3578899999999999


Q ss_pred             h----cCCHHHHHHHHhcCC---------------------------------------------CCCCCCCCCCCCHHH
Q 030660           85 R----NKHENVVRMLVKKDR---------------------------------------------IPLGYLNNAEQTPLS  115 (173)
Q Consensus        85 ~----~~~~~~~~~Ll~~~~---------------------------------------------~~~~~~~~~g~t~l~  115 (173)
                      .    .|+.+++++|++.+.                                             ++ +.++..|+||||
T Consensus       210 ~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~-n~~d~~G~TpLh  288 (327)
T 1sw6_A          210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML-NAQDSNGDTCLN  288 (327)
T ss_dssp             HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT-TCCCTTSCCHHH
T ss_pred             HHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC-CCCCCCCCCHHH
Confidence            9    899999999987632                                             23 778889999999


Q ss_pred             HHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhC
Q 030660          116 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  155 (173)
Q Consensus       116 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  155 (173)
                      +|++.++.+++++|+++| ++++..|..|+||||+|+..|
T Consensus       289 ~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          289 IAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence            999999999999999999 999999999999999998654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=5.3e-26  Score=158.68  Aligned_cols=126  Identities=18%  Similarity=0.117  Sum_probs=113.9

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660           28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      +..|.||||+|+..|+.++++.|++ ++++            +..+..|.||||+|+..|+.+++++|++.|+++ +..+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~  107 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRD  107 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT------------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC------------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCC
Confidence            3578899999999999999999999 8764            467889999999999999999999999999999 6666


Q ss_pred             -CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHH----------------HhCCCcHHHHHHhccc
Q 030660          108 -NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV----------------MRQNYGEPMIFISLNK  168 (173)
Q Consensus       108 -~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~----------------~~~~~~~~~~ll~~~~  168 (173)
                       ..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+                ..|+.+++++|++++.
T Consensus       108 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          108 MRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             SSSCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence             88999999999999999999999999 999999999999999888                5678899999988644

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=7e-25  Score=139.95  Aligned_cols=112  Identities=23%  Similarity=0.277  Sum_probs=104.7

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|.+++..+..|+||||+|+..++.+++++|++.|+++            +..+..|.||||+|+..++
T Consensus        25 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~~~   92 (136)
T 2jab_A           25 GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV------------NAVDAIGFTPLHLAAFIGH   92 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CcCCCCCCCHHHHHHHcCC
Confidence            4678999999999999999999999999999999999999999999875            4677899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      .+++++|++.|+++ +..+..|.||+|+|+..++.+++++|+++|
T Consensus        93 ~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           93 LEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999988 888999999999999999999999999865

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=5.1e-25  Score=156.42  Aligned_cols=132  Identities=15%  Similarity=0.041  Sum_probs=119.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCC
Q 030660           31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      ..++|+.|+..++.+.++.+++.|.++....      .++..+..|.||||+|+..   ++.+++++|++.|+++ +.++
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d  202 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKI------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQT  202 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBC------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhc------cccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccC
Confidence            3578999999999999999999998764321      1345578899999999998   8899999999999998 8889


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      ..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|++.
T Consensus       203 ~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          203 GKGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999 999999999999999999999999999999999864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.9e-25  Score=142.55  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=104.7

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCC-CCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE-GNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~-g~t~l~~a~~~~   87 (173)
                      -+.+++++|++.|.+++.++..|+||||+|+. ++.+++++|++.|+++            +..+.. |.||||+|+..+
T Consensus        23 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~------------~~~~~~~g~t~L~~A~~~~   89 (136)
T 1d9s_A           23 GQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP------------NCADPATLTRPVHDAAREG   89 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS------------SCCBTTTTBCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC------------CCcCCCCCCCHHHHHHHcC
Confidence            46889999999999999999999999999999 9999999999999885            456777 999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      +.+++++|++.|+++ +..+..|.||+|+|+..++.+++++|+++|
T Consensus        90 ~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           90 FLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             CHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999998 888999999999999999999999999988

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=2.1e-25  Score=160.08  Aligned_cols=127  Identities=20%  Similarity=0.203  Sum_probs=86.7

Q ss_pred             hHHHHHHHHhcccchhc------cCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHH
Q 030660           10 DHELLNVLRRRDSLLRK------NNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL   80 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l   80 (173)
                      +.+.++.+++.|.+++.      .+..|+||||+|+..   ++.+++++|++.|+++            +..|..|.|||
T Consensus       163 ~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv------------n~~d~~G~TpL  230 (301)
T 2b0o_E          163 DLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------------DAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT------------TCCCTTCCCHH
T ss_pred             CHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC------------CCCCCCCCCHH
Confidence            45667777777777776      466777777777776   6777777777777664            34566777777


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660           81 HNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  156 (173)
Q Consensus        81 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  156 (173)
                      |+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++++|++++ ++      .|.||||+|+..|+
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC-------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHhcCC
Confidence            7777777777777777777777 677777777777777777777777777766 33      46777777777665

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=7.3e-25  Score=131.06  Aligned_cols=93  Identities=23%  Similarity=0.325  Sum_probs=88.3

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHh
Q 030660           75 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  154 (173)
Q Consensus        75 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  154 (173)
                      .|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence            4789999999999999999999999988 888999999999999999999999999999 99999999999999999999


Q ss_pred             CCCcHHHHHHhcccc
Q 030660          155 QNYGEPMIFISLNKC  169 (173)
Q Consensus       155 ~~~~~~~~ll~~~~~  169 (173)
                      |+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999985

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.5e-24  Score=155.63  Aligned_cols=132  Identities=13%  Similarity=-0.007  Sum_probs=117.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCC
Q 030660           31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLN  107 (173)
Q Consensus        31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~  107 (173)
                      +.++|+.|+..|+.+.++.|++.|++++....      ....+..|.||||+|+..   +..+++++|+..|+++ +.++
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d  223 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKA  223 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCC------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCC
Confidence            45789999999999999999999988643110      001577899999999997   8899999999999988 8889


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      ..|.||||+|+..++.+++++|+++| ++++..|..|.|||++|+..|+.+++++|+++|++.
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            99999999999999999999999999 999999999999999999999999999999998864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=6.9e-24  Score=133.09  Aligned_cols=112  Identities=27%  Similarity=0.437  Sum_probs=105.6

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.|+++            +..+..|.||||+|+..++
T Consensus        13 ~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A           13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTC
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC------------cccCCCCCcHHHHHHHcCh
Confidence            4678999999999999999999999999999999999999999999874            4677889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      .+++++|++.|+++ +..+..|.||++.|+..++.+++++|+++|
T Consensus        81 ~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           81 LEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            99999999999988 888999999999999999999999999998

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.92  E-value=1.6e-24  Score=159.07  Aligned_cols=125  Identities=17%  Similarity=0.148  Sum_probs=116.2

Q ss_pred             CCCcHHHHHHHh-CCHHHHHHHHhhCcccCCCCCCCCCccccccC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660           30 KGETPLHIAARV-GDPAIVSTILKYAPAITNGTESEPESLLRITD--DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL  106 (173)
Q Consensus        30 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  106 (173)
                      .+.|+||.|+.. ++.++++.|++.|++++            ..+  ..|.||||+|+..|+.+++++|+..|+++ +..
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn------------~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~  264 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVN------------WVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQA  264 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTT------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCC------------ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCC
Confidence            455799999999 99999999999998864            344  78999999999999999999999999998 888


Q ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660          107 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus       107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                      +..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+..+.
T Consensus       265 d~~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          265 DSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999999999999999999999999 9999999999999999999999999999998774

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=3.7e-24  Score=143.14  Aligned_cols=126  Identities=19%  Similarity=0.102  Sum_probs=113.2

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~   87 (173)
                      -+.+++++|++ |.+++.++..|+||||+|+..|+.+++++|++.|++++            ..+ ..|+||||+|+..+
T Consensus        55 g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           55 ADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------HRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             TCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCSSSSCCHHHHHHHTT
T ss_pred             CCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------cCCCCCCCCHHHHHHhcC
Confidence            36789999999 99999999999999999999999999999999998853            445 78999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  166 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  166 (173)
                      +.+++++|+++|+++ +.++..|.||+|+|++.++.                  ..+.+|+++|+..|..+++++|.++
T Consensus       122 ~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          122 RPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999998 88999999999999874221                  3568999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=6.2e-24  Score=131.71  Aligned_cols=109  Identities=26%  Similarity=0.337  Sum_probs=97.9

Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 030660           26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  105 (173)
Q Consensus        26 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  105 (173)
                      .+|..|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..++.+++++|++.|+++ +.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~   70 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV------------NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NA   70 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS------------SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cc
Confidence            46889999999999999999999999999874            467788999999999999999999999999988 88


Q ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660          106 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  148 (173)
Q Consensus       106 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  148 (173)
                      .+..|.||||+|+..++.+++++|+++| ++++..+..|.+|-
T Consensus        71 ~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           71 RSKDGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            8999999999999999999999999999 99999999998874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=6.1e-25  Score=147.40  Aligned_cols=127  Identities=10%  Similarity=0.021  Sum_probs=112.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHHhcCCH----HHHHHHHhcCCCCCCC
Q 030660           31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNKHE----NVVRMLVKKDRIPLGY  105 (173)
Q Consensus        31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~  105 (173)
                      ++++|+.|++.|+.+.++.++..+..              ..+ ..|+||||+|+..++.    +++++|++.|+++ +.
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--------------~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~   70 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--------------DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KS   70 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--------------CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--------------cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CC
Confidence            56899999999999999999988743              333 6799999999999975    5899999999999 88


Q ss_pred             CCCCCCCHHHHHHhcCc------HHHHHHHHhcCCCcccccCCCCC-cHHHHHHHhCC-----CcHHHHHHh-cccccCC
Q 030660          106 LNNAEQTPLSIAIDSSL------TDIACFIIDQRPESLNHRLPEEL-TLLHSAVMRQN-----YGEPMIFIS-LNKCLSI  172 (173)
Q Consensus       106 ~~~~g~t~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~~ll~-~~~~~~~  172 (173)
                      ++..|+||||+|+..++      .+++++|+++| ++++..|..|. ||||+|+..+.     .+++++|++ +|+++++
T Consensus        71 ~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~  149 (186)
T 3t8k_A           71 RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI  149 (186)
T ss_dssp             CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred             CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence            99999999999999876      57899999999 99999999999 99999999544     469999999 9999876


Q ss_pred             C
Q 030660          173 V  173 (173)
Q Consensus       173 ~  173 (173)
                      .
T Consensus       150 ~  150 (186)
T 3t8k_A          150 K  150 (186)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=2.9e-23  Score=124.01  Aligned_cols=91  Identities=31%  Similarity=0.520  Sum_probs=84.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      .|+||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..++.+++++|++.|+++ +.++..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~   67 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN   67 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC
Confidence            4789999999999999999999999885            467889999999999999999999999999998 888999


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcC
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      |.||+|+|+..++.+++++|+++|
T Consensus        68 g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           68 GRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999988

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.9e-25  Score=164.42  Aligned_cols=131  Identities=12%  Similarity=0.070  Sum_probs=101.8

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC--CC
Q 030660           28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL--GY  105 (173)
Q Consensus        28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~--~~  105 (173)
                      +..++||||+|++.|+.++|++|++.|+....         ....+..|.||||+|+..|+.+++++|+++|++..  +.
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~---------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i  159 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEI---------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI  159 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS---------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH---------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccc
Confidence            34556999999999999999999999873211         11234467789999999999999999999986420  12


Q ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccc--cCCCCCcHHHHHH-HhCCCcHHHHHHhcccc
Q 030660          106 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH--RLPEELTLLHSAV-MRQNYGEPMIFISLNKC  169 (173)
Q Consensus       106 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~ll~~~~~  169 (173)
                      .+.. .||||.|+..|+.+++++|+++| ++++.  .+..|.||||+|+ ..|+.+++++|++.|++
T Consensus       160 ~~~~-~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          160 QAEN-YHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             SHHH-HHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             CCCC-CCHHHHHHHCCCHHHHHHHHHcC-CccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence            2222 89999999999999999999998 88776  7788899999999 99999999999987753

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=5.1e-26  Score=167.50  Aligned_cols=143  Identities=12%  Similarity=0.022  Sum_probs=116.7

Q ss_pred             chHHHHHHHHhcccch---hccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHh
Q 030660            9 MDHELLNVLRRRDSLL---RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR   85 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~   85 (173)
                      -+.+++++|++.|...   +..+..|.||||+|+..|+.++|++|+++|+++..         .+..+.. .||||+|+.
T Consensus       103 G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~---------~~i~~~~-~TpLh~Aa~  172 (376)
T 2aja_A          103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM---------AMIQAEN-YHAFRLAAE  172 (376)
T ss_dssp             CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH---------HHHSHHH-HHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccc---------cccCCCC-CCHHHHHHH
Confidence            4678999999998722   23345678999999999999999999999964110         0112222 899999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCC--CCCCCCCHHHHHH-hcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHH
Q 030660           86 NKHENVVRMLVKKDRIPLGY--LNNAEQTPLSIAI-DSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMI  162 (173)
Q Consensus        86 ~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  162 (173)
                      .|+.+++++|+++|+++ +.  .+..|.||||+|+ ..|+.+++++|+++| +       .|.||+++|+..|+.+++++
T Consensus       173 ~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~~evv~l  243 (376)
T 2aja_A          173 NGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYGEKYVNPF  243 (376)
T ss_dssp             TTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTTTTHHHH
T ss_pred             CCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCCCHHHHHH
Confidence            99999999999999876 44  6778999999999 999999999999866 3       27999999999999999999


Q ss_pred             HHhccccc
Q 030660          163 FISLNKCL  170 (173)
Q Consensus       163 ll~~~~~~  170 (173)
                      |+++|+++
T Consensus       244 L~~~ga~~  251 (376)
T 2aja_A          244 IARHVNRL  251 (376)
T ss_dssp             HHHHHHHH
T ss_pred             HHhcCccc
Confidence            99998865

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=4.9e-23  Score=131.44  Aligned_cols=100  Identities=19%  Similarity=0.208  Sum_probs=95.5

Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 030660           71 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS  150 (173)
Q Consensus        71 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  150 (173)
                      ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++++ ++++..+..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHH
Confidence            56789999999999999999999999999988 888999999999999999999999999999 9999999999999999


Q ss_pred             HHHhCCCcHHHHHHhcccccCC
Q 030660          151 AVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       151 a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+..|+.+++++|+++|+++++
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~  104 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRNA  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999999875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=3.2e-23  Score=142.43  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhh-CcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      -+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++. |+++            +..+..|.||||+|+..|
T Consensus        84 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~------------~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           84 GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL------------NQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC------------CCCCTTSCCHHHHHHHHT
T ss_pred             CcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc------------cccCCCCCCHHHHHHHcC
Confidence            367899999999999999999999999999999999999999998 8774            567889999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCC
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE  144 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  144 (173)
                      +.+++++|++.|+++ +.++..|.||+++|+..+..++++.|+..+ +.....+..+
T Consensus       152 ~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~  206 (222)
T 3ehr_A          152 YADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED  206 (222)
T ss_dssp             CHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence            999999999999998 889999999999999999999999999888 6665555433

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.1e-22  Score=127.44  Aligned_cols=99  Identities=18%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 030660           72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA  151 (173)
Q Consensus        72 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  151 (173)
                      .+..|.||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++++ ++++..|..|.||||+|
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHH
Confidence            4567889999999999999999999999988 888999999999999999999999999999 99999999999999999


Q ss_pred             HHhCCCcHHHHHHhcccccCC
Q 030660          152 VMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       152 ~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +..|+.+++++|+++|+++++
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~  101 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTV  101 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHcCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=3.6e-23  Score=128.23  Aligned_cols=99  Identities=23%  Similarity=0.276  Sum_probs=94.6

Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 030660           71 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS  150 (173)
Q Consensus        71 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  150 (173)
                      ..|..|.||||.|+..++.+++++|++.++++ +..+..|.||||.|+..++.+++++|++++ ++++..|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence            46889999999999999999999999999988 888999999999999999999999999999 9999999999999999


Q ss_pred             HHHhCCCcHHHHHHhcccccC
Q 030660          151 AVMRQNYGEPMIFISLNKCLS  171 (173)
Q Consensus       151 a~~~~~~~~~~~ll~~~~~~~  171 (173)
                      |+..|+.+++++|+++|++++
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVN  102 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCC
Confidence            999999999999999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=2.7e-22  Score=147.27  Aligned_cols=149  Identities=17%  Similarity=0.162  Sum_probs=105.7

Q ss_pred             chHHHHHHHHhcccchhccC--CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660            9 MDHELLNVLRRRDSLLRKNN--WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN   86 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~   86 (173)
                      -+.+++++|++.|++++..+  ..|+||||+|+..|+.+++++|+++|+++            +..|..|.||||+|+..
T Consensus       211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv------------n~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV------------NQADSAGRGPLHHATIL  278 (368)
T ss_dssp             CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHc
Confidence            57899999999999999998  88999999999999999999999999885            46788999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCC--cccccCCCCCcHHHHHHHhCC--CcHHHH
Q 030660           87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE--SLNHRLPEELTLLHSAVMRQN--YGEPMI  162 (173)
Q Consensus        87 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~l~~a~~~~~--~~~~~~  162 (173)
                      |+.+++++|+..|+++ +..+..|.||||+|+..++.+++++|+..+..  +....+..+.|+++++.....  .+..+.
T Consensus       279 g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~~ek  357 (368)
T 3jue_A          279 GHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEK  357 (368)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------------------
T ss_pred             CcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCCHHH
Confidence            9999999999999999 88999999999999999999999999876522  233455677888887765542  234445


Q ss_pred             HHhccccc
Q 030660          163 FISLNKCL  170 (173)
Q Consensus       163 ll~~~~~~  170 (173)
                      |...+.++
T Consensus       358 l~r~~~~~  365 (368)
T 3jue_A          358 LSRRSHDL  365 (368)
T ss_dssp             --------
T ss_pred             HHhcCCCc
Confidence            55544443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=5.2e-22  Score=140.79  Aligned_cols=114  Identities=24%  Similarity=0.341  Sum_probs=105.5

Q ss_pred             ccchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660            7 TTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN   86 (173)
Q Consensus         7 ~~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~   86 (173)
                      ...+.+++++|++.|...+..+..|+||||+|+..|+.+++++|++.|+++            +..|..|.||||+|+..
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~------------n~~d~~G~TpLh~A~~~  226 (276)
T 4hbd_A          159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV------------NVQDDDGSTALMCACEH  226 (276)
T ss_dssp             SHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------------CCCCCCCCCHHHHHHHC
Confidence            456788999999999988888999999999999999999999999999885            46788999999999999


Q ss_pred             CCHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           87 KHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        87 ~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      |+.+++++|++ .|+++ +..+..|.||+|+|+..++.+++++|+++.
T Consensus       227 g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          227 GHKEIAGLLLAVPSCDI-SLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TCHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcCCCCC-cCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99999999999 78888 889999999999999999999999999876

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.2e-21  Score=139.09  Aligned_cols=113  Identities=20%  Similarity=0.202  Sum_probs=103.1

Q ss_pred             cchHHHHHHHHhcccc------hhccCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCc
Q 030660            8 TMDHELLNVLRRRDSL------LRKNNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT   78 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t   78 (173)
                      .-+.+.+..+++.|.+      ++..+..|+||||+|+..   ++.+++++|+++|+++            +..|..|.|
T Consensus       140 ~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i------------n~~d~~g~T  207 (278)
T 1dcq_A          140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------------DKQTGKGST  207 (278)
T ss_dssp             TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------------TCCCTTCCC
T ss_pred             hcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc------------cccCCCCCC
Confidence            3467788889999988      444588999999999999   8999999999999885            467889999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           79 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        79 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      |||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|++++
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999998 899999999999999999999999999988

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=4.9e-21  Score=133.50  Aligned_cols=110  Identities=23%  Similarity=0.207  Sum_probs=99.9

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHHhcC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~   87 (173)
                      -+.+++++|++ |.+++.++..|+||||+|+..|+.+++++|++.|++++            ..+ ..|.||||+|+..|
T Consensus        56 g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           56 ADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------HRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             TCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCSSSCCCHHHHHHHTT
T ss_pred             CCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------cCCCCCCCCHHHHHHHcC
Confidence            46789999999 99999999999999999999999999999999998863            444 77999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH----------------hcCcHHHHHHHHhc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAI----------------DSSLTDIACFIIDQ  132 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~----------------~~~~~~~~~~Ll~~  132 (173)
                      +.+++++|+++|+++ +.++..|.||+|+|+                ..|+.+++++|+++
T Consensus       123 ~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          123 RPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            999999999999998 888999999999888                55778899999875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=8.1e-21  Score=116.82  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=84.9

Q ss_pred             cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcH
Q 030660           68 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL  147 (173)
Q Consensus        68 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  147 (173)
                      .....+..|.|+||+|+..|+.+++++|++.++++ +.++..|.||||+|+..++.+++++|+++| ++++..|..|.||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tp   93 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTA   93 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcH
Confidence            34467889999999999999999999999999988 888999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHhCCCcHHHHH
Q 030660          148 LHSAVMRQNYGEPMIF  163 (173)
Q Consensus       148 l~~a~~~~~~~~~~~l  163 (173)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=4.5e-20  Score=113.44  Aligned_cols=94  Identities=27%  Similarity=0.311  Sum_probs=82.8

Q ss_pred             chhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 030660           23 LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP  102 (173)
Q Consensus        23 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  102 (173)
                      .....+.+|.||||+|+..|+.+++++|++.|+++            +..+..|.||||+|+..++.+++++|++.|+++
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i------------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~   83 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV------------AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV   83 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            45567889999999999999999999999999874            467889999999999999999999999999988


Q ss_pred             CCCCCCCCCCHHHHHHhcCcHHHHHHH
Q 030660          103 LGYLNNAEQTPLSIAIDSSLTDIACFI  129 (173)
Q Consensus       103 ~~~~~~~g~t~l~~a~~~~~~~~~~~L  129 (173)
                       +.++..|.||+|+|+..++.+++++|
T Consensus        84 -~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           84 -XAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             -TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             -cccccCCCcHHHHHHHcCCHHHHHHh
Confidence             88899999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 5e-12
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 26/133 (19%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGT--------------------ESEP 65
           +    G T L  AA  G   ++  +L    A  N                      E+  
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202

Query: 66  ESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID 119
             LL       +  + G TPL  AV  KH  +V+ L++++ I +   ++  +T L +A++
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 120 SSLTDIACFIIDQ 132
             L  IA  +  +
Sbjct: 263 LKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 17/89 (19%), Positives = 33/89 (37%)

Query: 75  EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP 134
           E N  L  AV+N+  ++V+ L++              TPL  A+  S  DI   ++    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 135 ESLNHRLPEELTLLHSAVMRQNYGEPMIF 163
           + +  +       L +A+        +  
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFL 92

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
          +    L  A +  D  +V  +L+    +               ++ G TPLHNAV+   E
Sbjct: 4  EDNHLLIKAVQNEDVDLVQQLLEGGANVN-----------FQEEEGGWTPLHNAVQMSRE 52

Query: 90 NVVRM 94
          ++V +
Sbjct: 53 DIVEL 57

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 30/145 (20%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPA---------------------ITNGTESE 64
           +    G TPLH A ++    IV  +L++                                
Sbjct: 34  QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 65  PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK---------DRIPLGYLNNAEQTPLS 115
             + +   D  G T    A        ++ L K+          +     L     T L 
Sbjct: 94  KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153

Query: 116 IAIDSSLTDIACFIIDQRPESLNHR 140
            A +    ++   ++D+    +N  
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNAC 178

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 8e-12
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 33  TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
           TPLH+A+ +G   IV  +L+   +              +++ +  TPLH A R  H  V 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN------------VSNVKVETPLHMAARAGHTEVA 49

Query: 93  RMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE 135
           + L++  +  +      +QTPL  A     T++   +++    
Sbjct: 50  KYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
              G +PLH AA+ G   IV+ +LK   +                  +G TPL  A R  
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPN------------EVSSDGTTPLAIAKRLG 374

Query: 88  HENVVRML 95
           + +V  +L
Sbjct: 375 YISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 10  DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLL 69
              ++  L +R +    +N K ETPLH+AAR G   +   +L+    +            
Sbjct: 12  HLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN----------- 60

Query: 70  RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN 108
                +  TPLH A R  H N+V++L++ +  P      
Sbjct: 61  -AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 98

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 9   MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 68
              E+   L +        + +G TPLH+AA+ G   +V+ +L                 
Sbjct: 209 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN---------- 258

Query: 69  LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACF 128
             + +  G TPLH   +  H  V  +L+K   + +        TPL +A       +  F
Sbjct: 259 --LGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKF 315

Query: 129 IIDQRPESLNHRLPEELTLLHSAVMRQN 156
           ++  + +  N +     + LH A  + +
Sbjct: 316 LLQHQADV-NAKTKLGYSPLHQAAQQGH 342

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 22/120 (18%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR----------------- 70
           N  G TPLH+ A+ G   +   ++K+   +   T      L                   
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320

Query: 71  ----ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
                    G +PLH A +  H ++V +L+K        +++   TPL+IA       + 
Sbjct: 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYISVT 379

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 31/156 (19%), Positives = 51/156 (32%), Gaps = 14/156 (8%)

Query: 10  DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLL 69
              +  +L  RD+        G TPLH+A    +  IV  +L    +             
Sbjct: 144 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP------------ 191

Query: 70  RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 129
                 G TPLH A +     V R L++         +    TPL +A      ++   +
Sbjct: 192 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALL 250

Query: 130 IDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS 165
           + ++    N      LT LH      +     + I 
Sbjct: 251 LSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           +  G+TP+ +AA+ G   +V  +++   ++               D   +T    A  N 
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVE------------AVDATDHTARQLAQANN 265

Query: 88  HENVVRMLVK 97
           H N+V +  +
Sbjct: 266 HHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 26  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
              +KG T LH AA+V +  IV  ++    +  +             D++G TP+  A +
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-----------KQDEDGKTPIMLAAQ 230

Query: 86  NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
                VV  L+++    +  ++  + T   +A  ++  +I 
Sbjct: 231 EGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIV 270

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 14/73 (19%)

Query: 32  ETPLHIA-ARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           E+P+ +     G  AI   I +             ES+  I      T LH    N    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR-------------ESVNIIDPRHNRTVLHWIASNSSAE 47

Query: 91  VVRMLVKKDRIPL 103
               L+  +    
Sbjct: 48  KSEDLIVHEAKEC 60

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
              +G T LH A +  +  +V+ LV +        +   +TP+ +A      ++  ++I 
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 132 QRPESLNHRLPEELTLLHSAVMRQN 156
           Q    +      + T    A    +
Sbjct: 243 QGAS-VEAVDATDHTARQLAQANNH 266

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 5/85 (5%)

Query: 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLL 69
           + +   + R    +        T LH  A          ++ +         ++     
Sbjct: 13 SYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--- 68

Query: 70 RITDDEGNTPLHNAVRNKHENVVRM 94
             D + NTPL  AV  +   +V  
Sbjct: 69 -AMDCDENTPLMLAVLARRRRLVAY 92

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 10/117 (8%)

Query: 24  LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 83
             K   K E    +AA  G  + + T+               + ++++   E       A
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLC---------LLLTSDEIVKVIQAENYQAFRLA 133

Query: 84  VRNKHENVVRMLVKKDRIP-LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH 139
             N H +V+  L +      +  +         +A ++    +   + +  P     
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 11/124 (8%), Positives = 26/124 (20%), Gaps = 15/124 (12%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAP-----------AITNGTESEPESLLRI 71
            L                 G+  +   I ++             +  +G          +
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVK----KDRIPLGYLNNAEQTPLSIAIDSSLTDIAC 127
                   L         + +R L+     K   P   +       L +A+         
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

Query: 128 FIID 131
            ++ 
Sbjct: 335 LLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 9/76 (11%), Positives = 19/76 (25%), Gaps = 7/76 (9%)

Query: 21  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 80
                   +     L           +  +L   P I     +           + N  L
Sbjct: 269 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKALAPTA------TIPGDANELL 321

Query: 81  HNAVRNKHENVVRMLV 96
             A+R  ++    +L+
Sbjct: 322 RLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 13/161 (8%)

Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
           + L +L   D +++    +      +AA  G   +++ + +            P  ++ +
Sbjct: 107 DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL----------APTEIMAM 156

Query: 72  TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE--QTPLSIAIDSSLTDIACFI 129
              E       A  N H +V+  L +        +  AE        A+     ++  F+
Sbjct: 157 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 216

Query: 130 IDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL 170
           +D  P  L +    E       V             ++   
Sbjct: 217 LDC-PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAF 256

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 10/129 (7%), Positives = 33/129 (25%), Gaps = 3/129 (2%)

Query: 9   MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 68
            ++   + +   +  L   ++K    + +        +   +  Y  A  N    +  S 
Sbjct: 24  WENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYY-AHYNRNAKQLWSD 82

Query: 69  LRITDDEGNTPLHNAVRNKHENVVRMLVK--KDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
                 +       A      + +  L         +  +         +A ++    + 
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142

Query: 127 CFIIDQRPE 135
             + +  P 
Sbjct: 143 NRLCELAPT 151

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 4e-08
 Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 10/143 (6%)

Query: 31  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
           G+T LH+A        +  +L ++              L + +D G T LH A      +
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGH---------EYLDLQNDLGQTALHLAAILGEAS 59

Query: 91  VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 150
            V   +      +        T L +A        AC ++  RP          LT    
Sbjct: 60  TVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 151 AVMRQNYGEPMIFISLNKCLSIV 173
                ++    +    N      
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEE 141

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 73  DDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYLNNAEQTPLSIAI 118
            ++G+T LH AV ++HE  +  L+        L   N+  QT L +A 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 3e-05
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 27  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
               G TPLH+A      +++  +LK     T                 G TPL +A+  
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPT------------ARMYGGRTPLGSALLR 235

Query: 87  KHENVVRMLVKK 98
            +  + R+L   
Sbjct: 236 PNPILARLLRAH 247

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 5e-08
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
           PLH A    +   V  +L   P++               D +G  PLH +V  +   + 
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLL-----------QKDQDGRIPLHWSVSFQAHEIT 50

Query: 93 RMLVKK 98
            L+ K
Sbjct: 51 SFLLSK 56

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 7e-06
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 9   MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 68
              E+   L    + +R  +   + PLH                 +  +        +S 
Sbjct: 116 KWFEVSQFLIENGASVRIKDKFNQIPLHR-----------AASVGSLKLIELLCGLGKSA 164

Query: 69  LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACF 128
           +   D +G TPL +A+   H +   +LV+K       ++N       +A++     +  F
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKF 221

Query: 129 IIDQ 132
            ++ 
Sbjct: 222 FLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 1e-05
 Identities = 13/93 (13%), Positives = 30/93 (32%)

Query: 77  NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES 136
           N PLH A        V+ L+      L   +   + PL  ++     +I  F++ +    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 137 LNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC 169
                P++       +        ++    ++ 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 93

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 1   MDQELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG 60
             +E    M  +    L        ++   G T LH+AA  G   ++  +L  A    N 
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVN- 226

Query: 61  TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
                     I D +G TPLH A     E   R+LV+     +  +N   QT   +A
Sbjct: 227 ----------IKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 7e-06
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 10  DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLL 69
             E+L +L +    +   ++ G TPLH AA  G       +++    +            
Sbjct: 211 YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME----------- 259

Query: 70  RITDDEGNTPLHNAVRNKHENVVRMLVKKD 99
              +  G T    A  +    +  +  K++
Sbjct: 260 -AVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 14/110 (12%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 9   MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 68
           +D  +  ++++++  ++    + E+  +        +I+  +                ++
Sbjct: 201 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII---------ANM 251

Query: 69  LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI 118
           L   D  G+T L+ A R  + ++V  L+          N +   P+    
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 73  DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI--- 129
           D+ GNTPLH      +  +V+ LVK       Y +N  ++ L  A+ S     +      
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 162

Query: 130 IDQRPESLNHRLPEELTLLHSAVMRQNY 157
           +D     L        T+LH  ++    
Sbjct: 163 LDYLYPCLILEDSMNRTILHHIIITSGM 190

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 39/166 (23%)

Query: 30  KGETPLHIAARVGDPAIVSTILK-------------------------YAPAITNGTESE 64
            G TPLH    + +  +V  ++K                         Y           
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 65  PESLLRITDDEGNTPLHNAV------------RNKHENVVRMLVKKDRIPLGYLNNAEQT 112
               L + D    T LH+ +            +   + ++  +VKK   P+    N +++
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 113 PLSIAIDSSLTDIACFIIDQRPES--LNHRLPEELTLLHSAVMRQN 156
             +         I   +  +   +  LN +     T L+ A    N
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-06
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
          G++ LH+A    + A+   +++      +         L   ++   TPLH AV      
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQ--VKGDLAF------LNFQNNLQQTPLHLAVITNQPE 53

Query: 91 VVRM 94
          +   
Sbjct: 54 IAEA 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 9e-06
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 27  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
               G T LH+A  + +P +VS +LK    +                 +G +P       
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVN------------RVTYQGYSPYQLTWGR 188

Query: 87  KHENVVRMLVKKDRIPLGYLNNAE 110
               + + L +     L  L  +E
Sbjct: 189 PSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 75  EGNTPLHNAVRNKHENVVRMLVKK---DRIPLGYLNNAEQTPLSIA 117
           +G++ LH A+ ++ + +   ++++   D   L + NN +QTPL +A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-06
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
          G+TPLHIA   G+   V  ++        G E      L I ++   TPLH AV     +
Sbjct: 3  GDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRE------LDIYNNLRQTPLHLAVITTLPS 54

Query: 91 VVRM 94
          VVR+
Sbjct: 55 VVRL 58

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 9e-06
 Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 9   MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 68
               ++ +L +  + +    + G + LH A+  G   +V T+++     +          
Sbjct: 155 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS---------- 204

Query: 69  LRITDDEGNTPLHNAVRNKHENVVR 93
             + +   +TPL  A   +  +++R
Sbjct: 205 --LKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 74  DEGNTPLHNAVRNKHENVVRMLVKKDR---IPLGYLNNAEQTPLSIA 117
           ++G+TPLH AV   +   V  LV   +     L   NN  QTPL +A
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-05
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 71  ITDDEGNTPLHNAVRNKHENVVRMLVKK 98
             + +G+T    A       VV ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 12/68 (17%)

Query: 28  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
           + K ETPL +AAR G       +L                   ITD     P   A    
Sbjct: 153 DDKDETPLFLAAREGSYEASKALLDNFANRE------------ITDHMDRLPRDVASERL 200

Query: 88  HENVVRML 95
           H ++VR+L
Sbjct: 201 HHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 72 TDDEGNTPLHNAVRNKHENVVRML 95
           D  G T LH A R    +  + L
Sbjct: 19 MDKTGETSLHLAARFARADAAKRL 42

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 22/124 (17%)

Query: 12  ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL--- 68
           EL   +    SL  + +    T LH A   G   IV  +L+    + +  ++    L   
Sbjct: 18  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 77

Query: 69  ------------------LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 110
                             +   +  G TPLH A       +  ML++         ++ E
Sbjct: 78  ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYE 136

Query: 111 QTPL 114
            T +
Sbjct: 137 ATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 14/143 (9%)

Query: 9   MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 68
              E++  L  + + +   N  G TPLH AA      I   +L+                
Sbjct: 81  GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD---------- 130

Query: 69  LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACF 128
               D    T +H A    +  ++ +L    +      +    TPL +A D    + A  
Sbjct: 131 --AKDHYEATAMHRAAAKGNLKMIHIL-LYYKASTNIQDTEGNTPLHLACDEERVEEAKL 187

Query: 129 IIDQRPESLNHRLPEELTLLHSA 151
           ++ Q    +     EE T L  A
Sbjct: 188 LVSQGAS-IYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 13/81 (16%)

Query: 17  LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG 76
           L    +     + +G TPLH+A           ++    +I             I + E 
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY------------IENKEE 202

Query: 77  NTPLHNAVRNKHENVVRMLVK 97
            TPL  A +     +++ +V+
Sbjct: 203 KTPLQVA-KGGLGLILKRMVE 222

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 24/100 (24%)

Query: 23  LLRKNNWKGETPLHIAARVGDPAIVSTI------------------------LKYAPAIT 58
            L   +   ET LH+A R  D   +  +                             A  
Sbjct: 37  PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 96

Query: 59  NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 98
                  ++ + I ++ G TPL  A R KHE+   +L + 
Sbjct: 97  LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 136

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 69  LRITDDEGNTPLHNAVRNKHENVVRML 95
           +        T    ++ N +E++  +L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (76), Expect = 0.003
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 75 EGNTPLHNAVRNKHENVVRMLVKK 98
          +    L  A R   ++ VR+L+  
Sbjct: 1  DLGKKLLEAARAGQDDEVRILMAN 24

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 69  LRITDDEGNTPLHNAVRNKHENVVRMLV 96
           L   D  G TPL  A++   +++V +L 
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.83
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.82

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-34  Score=197.66  Aligned_cols=160  Identities=22%  Similarity=0.245  Sum_probs=140.1

Q ss_pred             chHHHHHHHHhcccc---hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--------------------
Q 030660            9 MDHELLNVLRRRDSL---LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------   65 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------   65 (173)
                      -+.+++++|++.|++   ++.++..|.||||+|+..|+.+++++|++.|++++.....+.                    
T Consensus        20 ~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~   99 (255)
T d1oy3d_          20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ   99 (255)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSS
T ss_pred             CCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHh
Confidence            467788888888776   666778888999999999999999999988888776554443                    


Q ss_pred             ------------------------------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHh
Q 030660           66 ------------------------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVK   97 (173)
Q Consensus        66 ------------------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   97 (173)
                                                                      ...++..+..|.||||+|+..++.+++++|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~  179 (255)
T d1oy3d_         100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD  179 (255)
T ss_dssp             SCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhc
Confidence                                                            22345577889999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660           98 KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus        98 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      .+.......+..|.||||+|++.++.+++++|+++| ++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus       180 ~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g-adin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccccccccccHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999886667788999999999999999999999999 99999999999999999999999999999999996

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.9e-32  Score=185.10  Aligned_cols=151  Identities=17%  Similarity=0.198  Sum_probs=138.3

Q ss_pred             HHHHHHHHhcccchhc-cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC------------------------
Q 030660           11 HELLNVLRRRDSLLRK-NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP------------------------   65 (173)
Q Consensus        11 ~~~~~~l~~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~------------------------   65 (173)
                      -|++++|+++|++++. .|.+|.||||+||..|+.+++++|++.|+.++.....+.                        
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4799999999999997 589999999999999999999999999998876655553                        


Q ss_pred             -------------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 030660           66 -------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  114 (173)
Q Consensus        66 -------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  114 (173)
                                                     +..++..+..|.||++.++..+..+++..++..+... +..+..|.|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL  160 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPL  160 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc-ccccccccccc
Confidence                                           3345667889999999999999999999999999888 88899999999


Q ss_pred             HHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHH
Q 030660          115 SIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIF  163 (173)
Q Consensus       115 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  163 (173)
                      |.|+..|+.+++++|+++| ++++..|..|+||||+|+..|+.++|++|
T Consensus       161 ~~A~~~g~~~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNF-ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chhccccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999 99999999999999999999999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.5e-31  Score=179.93  Aligned_cols=162  Identities=21%  Similarity=0.258  Sum_probs=145.0

Q ss_pred             chHHHH-HHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------C
Q 030660            9 MDHELL-NVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------E   66 (173)
Q Consensus         9 ~~~~~~-~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~   66 (173)
                      -+.+.+ ++|.+.+..++.+|..|+||||+|+..|+.++++++++.+.........+.                     +
T Consensus        14 G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~   93 (223)
T d1uoha_          14 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG   93 (223)
T ss_dssp             TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccC
Confidence            355556 555677889999999999999999999999999999999887765555443                     3


Q ss_pred             ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCc
Q 030660           67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT  146 (173)
Q Consensus        67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  146 (173)
                      ..++..+..|.||||+|+..++.+++++|++.|.++ +.++..|.||+|.|+..++.+++++|.+.+ .+++..|..|.|
T Consensus        94 ~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~-~~i~~~d~~g~T  171 (223)
T d1uoha_          94 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNT  171 (223)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTCCC
T ss_pred             ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhcccc-ceeeeccCCCCc
Confidence            445678899999999999999999999999999988 888999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          147 LLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       147 ~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |||+|+..|+.+++++|+++|+++++
T Consensus       172 pL~~Aa~~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         172 PLHLACDEERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             eeccccccCcHHHHHHHHHCCCCCCC
Confidence            99999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-30  Score=165.96  Aligned_cols=146  Identities=18%  Similarity=0.230  Sum_probs=136.1

Q ss_pred             cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660            8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK   87 (173)
Q Consensus         8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~   87 (173)
                      .-+.+++++|+++|++++.+|..|+||||+|+ .++.+++++|++.++++            +..+..+.++++.++..+
T Consensus        11 ~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~------------~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_          11 RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP------------DLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccccccc------------ccccccCccccccccccc
Confidence            35789999999999999999999999999886 78999999999999875            466788999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  167 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  167 (173)
                      ..+.+..++..+... +..+..|.+|+|.|+..++.+++++|+++++.+++..|..|.||||+|+..|+.+++++|+++|
T Consensus        78 ~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          78 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999888 8889999999999999999999999999996689999999999999999999999999999987

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-30  Score=175.49  Aligned_cols=141  Identities=21%  Similarity=0.205  Sum_probs=132.8

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE   89 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~   89 (173)
                      +.+++++|+++|.+++..|..|+||||+|+..|+.+++++|++.|.++            +..+..|.||||+|+..+..
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~------------~~~~~~~~t~L~~a~~~~~~  149 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP------------DAKDHYEATAMHRAAAKGNL  149 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCH
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC------------CCcCCCCCccchhhhhcCCc
Confidence            578999999999999999999999999999999999999999999875            45778999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHh
Q 030660           90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  165 (173)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  165 (173)
                      +++++|...+.++ +..+..|+||||.|+..++.+++++|+++| ++++..|..|+||||+|. .|+.+++++|++
T Consensus       150 ~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         150 KMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             chhhhhcccccee-eeccCCCCceeccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            9999999999988 889999999999999999999999999999 999999999999999984 699999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.5e-29  Score=176.04  Aligned_cols=151  Identities=18%  Similarity=0.159  Sum_probs=132.4

Q ss_pred             HHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------------
Q 030660           14 LNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------------   65 (173)
Q Consensus        14 ~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------------   65 (173)
                      .+.+++.|+++|.+|..|+||||+|++.|+.+++++|+++|++++.....+.                            
T Consensus        57 ~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  136 (277)
T d2fo1e1          57 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI  136 (277)
T ss_dssp             HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred             hhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccc
Confidence            4556788999999999999999999999999999999999999987766553                            


Q ss_pred             ----------------------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 030660           66 ----------------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  105 (173)
Q Consensus        66 ----------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  105 (173)
                                                              ....+..+..|.|+||.++..++.+++.+++.......+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~  216 (277)
T d2fo1e1         137 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  216 (277)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             cccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccc
Confidence                                                    1112345568999999999999999998877654444478


Q ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHh
Q 030660          106 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  165 (173)
Q Consensus       106 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  165 (173)
                      .+..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+.
T Consensus       217 ~d~~g~tpL~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         217 QDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            8999999999999999999999999999 9999999999999999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-29  Score=176.25  Aligned_cols=163  Identities=18%  Similarity=0.171  Sum_probs=134.9

Q ss_pred             chHHHHHHHHhcccchhccCC-CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------
Q 030660            9 MDHELLNVLRRRDSLLRKNNW-KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------   65 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------   65 (173)
                      -+.+++++|++.|++++.++. .|+||||+|+..|+.+++++|++.+...........                      
T Consensus        16 ~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (285)
T d1wdya_          16 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhc
Confidence            478999999999999997764 699999999999999999999999877654443332                      


Q ss_pred             ------------------------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-----
Q 030660           66 ------------------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-----   98 (173)
Q Consensus        66 ------------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-----   98 (173)
                                                                ..........|.||||+|+..+..+++++|++.     
T Consensus        96 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i  175 (285)
T d1wdya_          96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  175 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT
T ss_pred             ccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc
Confidence                                                      001122345689999999999988777777653     


Q ss_pred             ---------------------------------CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCC
Q 030660           99 ---------------------------------DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL  145 (173)
Q Consensus        99 ---------------------------------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  145 (173)
                                                       |+++ +.++..|.||||.|++.++.+++++|+++.+++++..|.+|.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~  254 (285)
T d1wdya_         176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK  254 (285)
T ss_dssp             TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC
T ss_pred             ccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCC
Confidence                                             2332 455678999999999999999999999865499999999999


Q ss_pred             cHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          146 TLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       146 t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ||||+|+..|+.+++++|+++||++++
T Consensus       255 TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         255 TALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            999999999999999999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=162.58  Aligned_cols=143  Identities=22%  Similarity=0.278  Sum_probs=130.0

Q ss_pred             cchHHHHHHHHhc-ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660            8 TMDHELLNVLRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN   86 (173)
Q Consensus         8 ~~~~~~~~~l~~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~   86 (173)
                      .-+.++++.|++. +.+++..|..|+||||+|+. ++.+++++|++.+.++            +..+..|.+|++.++..
T Consensus        12 ~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~------------~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_          12 RGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP------------NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccc------------ccccccccccccccccc
Confidence            3478899998864 78999999999999999874 8899999999999875            35667899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660           87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  166 (173)
Q Consensus        87 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  166 (173)
                      ++.++++++++.++++ +.++..|.||+|+|++.++.+++++|+ .+ ++++..|..|+||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-ccccCCCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999988 788999999999999999999999887 56 88999999999999999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-28  Score=168.23  Aligned_cols=163  Identities=18%  Similarity=0.179  Sum_probs=99.8

Q ss_pred             chHHHHHHHHh-cccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCC---CCC-------------------
Q 030660            9 MDHELLNVLRR-RDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTE---SEP-------------------   65 (173)
Q Consensus         9 ~~~~~~~~l~~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~~~-------------------   65 (173)
                      -+.++++.|++ .+..++.+|..|+||||+|+..|+.+++++|++.|++++....   .+.                   
T Consensus        11 g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (229)
T d1ixva_          11 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY   90 (229)
T ss_dssp             TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccc
Confidence            35678887766 5789999999999999999999999999999999988753222   121                   


Q ss_pred             ----CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccC
Q 030660           66 ----ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL  141 (173)
Q Consensus        66 ----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  141 (173)
                          .......+..+.++++.++..+..+++..|+..+... ...+..|+||+|.|+.+++.+++++|++.++.+++..|
T Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d  169 (229)
T d1ixva_          91 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD  169 (229)
T ss_dssp             SSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCC
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccccccccccc
Confidence                1111223334455555555555555555555555444 44455555555555555555555555555434455555


Q ss_pred             CCCCcHHHHHHHhCCCcHHHHHHh-cccccCC
Q 030660          142 PEELTLLHSAVMRQNYGEPMIFIS-LNKCLSI  172 (173)
Q Consensus       142 ~~g~t~l~~a~~~~~~~~~~~ll~-~~~~~~~  172 (173)
                      ..|.||||+|+..|+.+++++|++ .|+++++
T Consensus       170 ~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~  201 (229)
T d1ixva_         170 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL  201 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred             cccCCchhhhcccccHHHHHHHHHhcCCCCCC
Confidence            555555555555555555555553 3555443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.7e-28  Score=173.19  Aligned_cols=151  Identities=21%  Similarity=0.185  Sum_probs=104.7

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|++.|++++..|..|+||||+|+..|+.+++++|++++.+....            +..+.+||+.++..++
T Consensus        51 G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~------------~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP------------DNEGWIPLHAAASCGY  118 (291)
T ss_dssp             TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC------------CTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccc------------cccccccccccccccc
Confidence            4688999999999999999999999999999999999999999999875432            3334444444444444


Q ss_pred             HHHHHHHHhcCCCC-----------------------------------------------------------CCCCCCC
Q 030660           89 ENVVRMLVKKDRIP-----------------------------------------------------------LGYLNNA  109 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~-----------------------------------------------------------~~~~~~~  109 (173)
                      .++++.|++.+...                                                           ....+..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence            44444444333211                                                           0223345


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |.||+|.|+..++.+++++|++.| ++++..+..|.||||+|+..|+.+++++|+++|+++++
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g-~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~  260 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA  260 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCChhhHHHHcCChhhhcccccce-ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            666667777667777777777666 66666666677777777777777777777777766654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=173.15  Aligned_cols=157  Identities=19%  Similarity=0.155  Sum_probs=126.8

Q ss_pred             HHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--------------------------
Q 030660           12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------------   65 (173)
Q Consensus        12 ~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------------   65 (173)
                      ++++++...|.++|.+|..|+||||+|+..|+.+++++|++.|++++.....+.                          
T Consensus        20 ~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~   99 (221)
T d1iknd_          20 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH   99 (221)
T ss_dssp             CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTS
T ss_pred             HHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence            356677788889999999999999999999999999999999998876655553                          


Q ss_pred             -CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCC
Q 030660           66 -ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE  144 (173)
Q Consensus        66 -~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  144 (173)
                       ..........|.||+|.|+..+..+++.+++..+.......+.+|.||+|.|+.+|+.+++++|+++| ++++.+|.+|
T Consensus       100 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G  178 (221)
T d1iknd_         100 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQG  178 (221)
T ss_dssp             SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTC
T ss_pred             ccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcC-CcccccCCCC
Confidence             11123344567899999999999999999998888775555677999999999999999999999988 8899999999


Q ss_pred             CcHHHHHHHhCCCcHHHHHHhcccc
Q 030660          145 LTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       145 ~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      +||||+|+..++.+++++|++++.+
T Consensus       179 ~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         179 YSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9999999999999999999887654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.2e-29  Score=155.61  Aligned_cols=122  Identities=15%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      .+.++||+|+..|+.++|++|+++|+++            +..+..|.||+|.|+ .|+.+++++|++.|+++ +..+..
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~------------n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~   67 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP------------NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPA   67 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT------------TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTT
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc------------ccccccccccccccc-ccccccccccccccccc-cccccc
Confidence            3568999999999999999999999885            457788999999764 68999999999999998 777776


Q ss_pred             CC-CHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660          110 EQ-TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  166 (173)
Q Consensus       110 g~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  166 (173)
                      +. ||+|.|+++|+.+++++|+++| ++++..|..|+||||+|+..|+.+++++|++.
T Consensus        68 ~~~~~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          68 TLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccccccccc-cccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            54 7999999999999999999999 99999999999999999999999999999864

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.1e-28  Score=168.16  Aligned_cols=138  Identities=22%  Similarity=0.191  Sum_probs=103.4

Q ss_pred             hccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 030660           25 RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL-  103 (173)
Q Consensus        25 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~-  103 (173)
                      ...+++|.||||+|++.|+.+++++|+++|+++..         ++.++..|.||||+|+..|+.+++++|++.|+++. 
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~---------i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~   73 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY---------LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV   73 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG---------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCccc---------ccCcCCCCCCccchHHhhcccccccccccccccccc
Confidence            45688999999999999999999999999877422         34566677777777777777777777777765541 


Q ss_pred             ------------------------------------------------------------------------------CC
Q 030660          104 ------------------------------------------------------------------------------GY  105 (173)
Q Consensus       104 ------------------------------------------------------------------------------~~  105 (173)
                                                                                                    +.
T Consensus        74 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  153 (255)
T d1oy3d_          74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA  153 (255)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC
T ss_pred             cccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccc
Confidence                                                                                          23


Q ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHhcCCCccc-ccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          106 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN-HRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       106 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ++..|.||||+|+++++.+++++|++.+ .+.+ ..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus       154 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~  220 (255)
T d1oy3d_         154 ENYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA  220 (255)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ccccCcccccccccccccccccchhccc-ccccccccccccccccccccccHHHHHHHHHHCCCCCCC
Confidence            3445777777777777777777777777 4443 3456788888888888888888888888887764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=8.9e-28  Score=154.65  Aligned_cols=140  Identities=19%  Similarity=0.270  Sum_probs=128.6

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|+++|++++ .+..|+||||+|+..++.++++.++......            ......+.++++.++....
T Consensus        13 g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_          13 GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR------------DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             TCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT------------TCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccc------------ccccccccccccccccccc
Confidence            46899999999999876 6889999999999999999999999887653            2455677889999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHH
Q 030660           89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIF  163 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  163 (173)
                      .++++++...+... ..++..|+||||+|+..++.+++++|++.| ++++..|.+|.||||+|+..|+.|++++|
T Consensus        80 ~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999988 888999999999999999999999999999 99999999999999999999999999976

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1e-28  Score=152.69  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=104.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCC
Q 030660           32 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ  111 (173)
Q Consensus        32 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  111 (173)
                      .|||++|++.|+.++|++|++.|+++            +..+..|+||||+|+..++.+++++|++.|+++ +.++..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~------------n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~   69 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHI   69 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC------------CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc------------cccccccccccccccccccccccccccccccee-eecccccc
Confidence            48999999999999999999999885            467789999999999999999999999999998 88899999


Q ss_pred             CHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660          112 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  164 (173)
Q Consensus       112 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  164 (173)
                      ||||+|+.+++.+++++|+++| ++++..|.+|.||||+|.    .+.++.|+
T Consensus        70 tpLh~A~~~~~~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          70 TPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             CHHHHHHTTTCCHHHHHHHTTC-CCSSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             cchhhhhhcCchhhhhhhhccc-ccceeeCCCCCCHHHHHh----HHHHHHhc
Confidence            9999999999999999999999 999999999999999983    34454444

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-27  Score=162.00  Aligned_cols=149  Identities=17%  Similarity=0.132  Sum_probs=96.4

Q ss_pred             hHHHHHHHH----hcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--------------------
Q 030660           10 DHELLNVLR----RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------   65 (173)
Q Consensus        10 ~~~~~~~l~----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------   65 (173)
                      +.++++.|+    +.|.+++.+|..|+||||+|+..|+.+++++|++.|++.+.....+.                    
T Consensus        15 ~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   94 (228)
T d1k1aa_          15 NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD   94 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence            566666665    58999999999999999999999999999999999998877665553                    


Q ss_pred             ---------------------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660           66 ---------------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL  106 (173)
Q Consensus        66 ---------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  106 (173)
                                                             ..........+.++++.|+..+...+++.++..+... +.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~  173 (228)
T d1k1aa_          95 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQ  173 (228)
T ss_dssp             HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCB
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc-ccc
Confidence                                                   0111122334555555555555555555555555544 444


Q ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHH
Q 030660          107 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEP  160 (173)
Q Consensus       107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  160 (173)
                      +..|.||+|+|+.+++.+++++|+++| ++++..|.+|.||||+|+..|+.+++
T Consensus       174 d~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         174 MYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             CTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            555555555555555555555555555 55555555555555555555554444

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-27  Score=148.65  Aligned_cols=123  Identities=19%  Similarity=0.193  Sum_probs=111.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 030660           33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT  112 (173)
Q Consensus        33 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  112 (173)
                      ++|+.|+..|+.++|++|++.|+++            +.++..|+||||+|+..++.+++++|++.+++. +..|.+|+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~------------n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~t   69 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP------------SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWT   69 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC------------CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc------------ccccccccccccccccccccccccccccccccc-ccccccCcc
Confidence            5799999999999999999999885            467889999999999999999999999999988 889999999


Q ss_pred             HHHHHHhcCcHHHHHHHHhcCCCcccccCC-CCCcHHHHH--HHhCCCcHHHHHHhcccc
Q 030660          113 PLSIAIDSSLTDIACFIIDQRPESLNHRLP-EELTLLHSA--VMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       113 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a--~~~~~~~~~~~ll~~~~~  169 (173)
                      |||+|+.+|+.+++++|+++| ++++..+. .+.||++++  +..|+.+++++|++.+..
T Consensus        70 pLh~A~~~g~~~~v~~Ll~~g-a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1          70 PLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHHh
Confidence            999999999999999999999 99987664 588887766  567899999999987654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5e-26  Score=166.89  Aligned_cols=160  Identities=19%  Similarity=0.235  Sum_probs=100.6

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC------------------------
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP------------------------   65 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~------------------------   65 (173)
                      +.+++++|+++|.+++..+..|.+||++|+..++.+++++|+++|++++.....+.                        
T Consensus       144 ~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~  223 (408)
T d1n11a_         144 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS  223 (408)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccc
Confidence            57789999999999999999999999999999999999999999988765444432                        


Q ss_pred             ------------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 030660           66 ------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS  115 (173)
Q Consensus        66 ------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  115 (173)
                                                    ....+..+..|.||++.|+..++.+++++|++.|+++ +..+..+.||+|
T Consensus       224 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~  302 (408)
T d1n11a_         224 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLH  302 (408)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHH
T ss_pred             ccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccch
Confidence                                          1122334556677777777777777777777666554 333334444444


Q ss_pred             HHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660          116 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  171 (173)
Q Consensus       116 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  171 (173)
                      .++..++.++++++++.| ++++..|.+|.||||+|+..|+.+++++|+++||+++
T Consensus       303 ~~~~~~~~~~~~~ll~~g-~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         303 VASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             HHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             hhcccCcceeeeeecccc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            444444444444444444 4444444444444444444444444444444444443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.8e-26  Score=154.56  Aligned_cols=158  Identities=18%  Similarity=0.204  Sum_probs=134.2

Q ss_pred             chHHHHHHHHhcccchhc---cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--------------------
Q 030660            9 MDHELLNVLRRRDSLLRK---NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------   65 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------   65 (173)
                      -..+++++|+++|++++.   .+..|.+|+++++..+..++++.++..+...........                    
T Consensus        45 g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  124 (229)
T d1ixva_          45 QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL  124 (229)
T ss_dssp             TCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence            357899999999988754   466789999999999999999999888876543332221                    


Q ss_pred             ---CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhc-CCCcccccC
Q 030660           66 ---ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ-RPESLNHRL  141 (173)
Q Consensus        66 ---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~  141 (173)
                         +......+..|+||||.|+..++.+++++|+..+....+.++..|+||||+|+.+++.+++++|+++ | ++++..|
T Consensus       125 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g-ad~~~~d  203 (229)
T d1ixva_         125 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-AEYDLVD  203 (229)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-CCSCCCC
T ss_pred             hhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcC-CCCCCcC
Confidence               3344567889999999999999999999999998766688999999999999999999999999975 7 9999999


Q ss_pred             CCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          142 PEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       142 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      ..|+||||+|+.   .+++++|++.|+|.
T Consensus       204 ~~g~t~l~~A~~---~~~~~~Ll~~g~d~  229 (229)
T d1ixva_         204 NKGAKAEDVALN---EQVKKFFLNNVVDA  229 (229)
T ss_dssp             TTSCCTGGGCSC---HHHHHHHHHHCCCC
T ss_pred             CCCCCHHHHHhh---HHHHHHHHHcCCCC
Confidence            999999999984   47999999999974

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=164.32  Aligned_cols=141  Identities=22%  Similarity=0.251  Sum_probs=131.0

Q ss_pred             hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660           10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE   89 (173)
Q Consensus        10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~   89 (173)
                      +.++++++.+.+...+..+..|.|||+.|+..++.+++++|++.|+++            +..+..+.||||.++..+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~------------~~~~~~~~t~L~~~~~~~~~  310 (408)
T d1n11a_         243 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV------------DATTRMGYTPLHVASHYGNI  310 (408)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT------------TCCCSSCCCHHHHHHHSSCS
T ss_pred             cHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc------------ccccccccccchhhcccCcc
Confidence            567889999999999999999999999999999999999999999875            35667889999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660           90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  164 (173)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  164 (173)
                      ++++++++.|++. +.++..|.||||.|+++|+.+++++|+++| ++++..|.+|+||||+|++.|+.++|++|.
T Consensus       311 ~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         311 KLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             eeeeeeccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999988 888999999999999999999999999999 999999999999999999999999998654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.3e-25  Score=143.39  Aligned_cols=129  Identities=16%  Similarity=0.062  Sum_probs=112.5

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCC
Q 030660           33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLNNA  109 (173)
Q Consensus        33 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~  109 (173)
                      ..|..|++.++...+..++..|.+......      ....+..|.||||+|+..   +..+++++|+++|+++ +.++..
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~   80 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIP------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGK   80 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCC------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCC------cccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhh
Confidence            346678899999999999998877543221      223467799999999974   5679999999999998 889999


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660          110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  169 (173)
Q Consensus       110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  169 (173)
                      |.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|++.++.
T Consensus        81 g~TpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          81 GSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hccccccccccccccccccccccC-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999 99999999999999999999999999999998764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=8.9e-26  Score=159.06  Aligned_cols=158  Identities=15%  Similarity=0.120  Sum_probs=138.9

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC-----------------------
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-----------------------   65 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-----------------------   65 (173)
                      -+.+++++|++.|.+....+..+.+||+.|+..++.++++.|++++.........+.                       
T Consensus        84 g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~  163 (291)
T d1s70b_          84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             CCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccc
Confidence            368999999999999999999999999999999999999999999987765554443                       


Q ss_pred             -------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhc
Q 030660           66 -------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS  120 (173)
Q Consensus        66 -------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  120 (173)
                                               .......+..|.||||.|+..|+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~  242 (291)
T d1s70b_         164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHW  242 (291)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             cccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHc
Confidence                                     1122346678999999999999999999999999988 88899999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          121 SLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       121 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      |+.+++++|+++| ++++..|..|.||||+|++    +++++|.+..+.-++
T Consensus       243 g~~~iv~lLl~~G-adv~~~d~~G~TaL~~A~e----~~~~~L~~~~~~~~~  289 (291)
T d1s70b_         243 GKEEACRILVENL-CDMEAVNKVGQTAFDVADE----DILGYLEELQKKQNL  289 (291)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS----GGGHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH----HHHHHHHHHhhhccC
Confidence            9999999999999 9999999999999999964    788988877665544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-24  Score=145.72  Aligned_cols=131  Identities=25%  Similarity=0.325  Sum_probs=114.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHh----hCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC--
Q 030660           30 KGETPLHIAARVGDPAIVSTILK----YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL--  103 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~--  103 (173)
                      +|+||||+||..|+.++++.|++    .|++            ++..+..|.||||+|+..|+.+++++|++.++...  
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~------------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~   69 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL   69 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC------------CCccCCCCCccceehhccccccccccccccccccccc
Confidence            69999999999999999999986    4554            35678899999999999999999999999876653  


Q ss_pred             --------------------------------------------------------------------CCCCCCCCCHHH
Q 030660          104 --------------------------------------------------------------------GYLNNAEQTPLS  115 (173)
Q Consensus       104 --------------------------------------------------------------------~~~~~~g~t~l~  115 (173)
                                                                                          ......+.++++
T Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  149 (228)
T d1k1aa_          70 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI  149 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             ccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHH
Confidence                                                                                122236788999


Q ss_pred             HHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCCC
Q 030660          116 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  173 (173)
Q Consensus       116 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~  173 (173)
                      .|+..+...+++.+++++ ..++..+..|.||||+|+..|+.+++++|+++|++++++
T Consensus       150 ~a~~~~~~~~~~~~~~~~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~  206 (228)
T d1k1aa_         150 HAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  206 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHhhhhhhhhhhhhhc-cccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            999999999999999888 888889999999999999999999999999999998763

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=6.7e-26  Score=158.41  Aligned_cols=144  Identities=18%  Similarity=0.200  Sum_probs=108.4

Q ss_pred             HHHHhcccchhccC-CCCCcHHHHHHHhCCHHHHHHHH--------hhCcccCCCCCCCCCccccccCCCCCcHHHHHHh
Q 030660           15 NVLRRRDSLLRKNN-WKGETPLHIAARVGDPAIVSTIL--------KYAPAITNGTESEPESLLRITDDEGNTPLHNAVR   85 (173)
Q Consensus        15 ~~l~~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll--------~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~   85 (173)
                      +.|.+.+.+  ..+ ..|+||||+|+..|+.++|++|+        +.|+++            +.+|..|.||||+|+.
T Consensus        18 ~~l~~~~~n--~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv------------n~~d~~G~TpLh~A~~   83 (277)
T d2fo1e1          18 EPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV------------NAMDCDENTPLMLAVL   83 (277)
T ss_dssp             SCCSTTTTT--TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT------------TCCCTTSCCHHHHHHH
T ss_pred             HHHHhcCCC--cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc------------cccCCCCCeeeccccc
Confidence            334455544  344 35999999999999999887775        456664            5678899999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcC--------------------------------------------
Q 030660           86 NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS--------------------------------------------  121 (173)
Q Consensus        86 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~--------------------------------------------  121 (173)
                      .|+.+++++|+++|+++ +.++..|.||++.|+..+                                            
T Consensus        84 ~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (277)
T d2fo1e1          84 ARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA  162 (277)
T ss_dssp             HTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHH
T ss_pred             ccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccc
Confidence            99999999999999887 555555555555555444                                            


Q ss_pred             ------------------------------------cHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHh
Q 030660          122 ------------------------------------LTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  165 (173)
Q Consensus       122 ------------------------------------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  165 (173)
                                                          +.+++++++...+.+.+..|..|.||||+|+..|+.+++++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~  242 (277)
T d2fo1e1         163 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ  242 (277)
T ss_dssp             HHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                44444443332224556678899999999999999999999999


Q ss_pred             cccccCCC
Q 030660          166 LNKCLSIV  173 (173)
Q Consensus       166 ~~~~~~~~  173 (173)
                      +|++++++
T Consensus       243 ~gadin~~  250 (277)
T d2fo1e1         243 QGASVEAV  250 (277)
T ss_dssp             TTCCSSCC
T ss_pred             CcCCCCCc
Confidence            99998753

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4e-24  Score=137.30  Aligned_cols=126  Identities=21%  Similarity=0.247  Sum_probs=116.3

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCC
Q 030660           32 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ  111 (173)
Q Consensus        32 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  111 (173)
                      .|||+.|++.|+.++|++|+++|++.             ..+..|+||||+|+..++.+++..++...... ...+..+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-------------~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~   68 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-------------TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-------------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-------------ccccCCCccccccccccccccccccccccccc-cccccccc
Confidence            38999999999999999999999874             35788999999999999999999999887777 66677889


Q ss_pred             CHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          112 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       112 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      ++++.++...+.+++++++.++ .+++..+..|.||||+|+..|+.+++++|+++|+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~  128 (153)
T d1awcb_          69 TPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cccccccccccceeeecccccC-CccccccccCchHHHhhhhcchhheeeeccccccCCcc
Confidence            9999999999999999999999 89999999999999999999999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.8e-25  Score=156.07  Aligned_cols=138  Identities=20%  Similarity=0.162  Sum_probs=106.8

Q ss_pred             cccchhcc-CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC-------HHH
Q 030660           20 RDSLLRKN-NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-------ENV   91 (173)
Q Consensus        20 ~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-------~~~   91 (173)
                      .+.++|.. |..|+||||+|+..|+.++|++|++.|+++            +.++..|.||||.|+..++       .++
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~------------~~~d~~G~TpL~~A~~~~~~~~~~~~~~l  162 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR------------LYGDNMGESCLVKAVKSVNNYDSGTFEAL  162 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------CcCCcccccHHHHhhhcccchhhhhHHHH
Confidence            45677765 899999999999999999999999999985            4678899999999998664       234


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHhcCc----HH--------HHHHHHhcCCC------------------------
Q 030660           92 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL----TD--------IACFIIDQRPE------------------------  135 (173)
Q Consensus        92 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~----~~--------~~~~Ll~~~~~------------------------  135 (173)
                      +.++...   . ...+..|+||+|.++..+.    ..        ++.++.+.+..                        
T Consensus       163 l~~l~~~---~-~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
T d1sw6a_         163 LDYLYPC---L-ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI  238 (301)
T ss_dssp             HHHHGGG---G-GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHH
T ss_pred             HHHHhhh---h-hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHH
Confidence            4544432   2 5567889999998876432    22        23344433311                        


Q ss_pred             ------------cccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCCC
Q 030660          136 ------------SLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  173 (173)
Q Consensus       136 ------------~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~  173 (173)
                                  .+|.+|..|.||||+|+..|+.+++++|+++||++++.
T Consensus       239 ~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~  288 (301)
T d1sw6a_         239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  288 (301)
T ss_dssp             HHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence                        15778999999999999999999999999999999863

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=4.5e-27  Score=170.02  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=75.4

Q ss_pred             HHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHH
Q 030660           14 LNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVR   93 (173)
Q Consensus        14 ~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~   93 (173)
                      ++.|++.|++++.++..|+||||+|+..|+.++|++|++.|++++.          ...+..|.||||+|+..|+.++++
T Consensus       109 ~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~----------~~~~~~g~t~L~~Aa~~g~~~iv~  178 (346)
T d2ajaa1         109 LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM----------AMIQAENYHAFRLAAENGHLHVLN  178 (346)
T ss_dssp             HTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH----------HHHSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----------cccccCCCChhHHHHHHhhHHHHH
Confidence            3446778888888888888888888888888888888888876421          012345778888888888888888


Q ss_pred             HHHhcCCCCC--CCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660           94 MLVKKDRIPL--GYLNNAEQTPLSIAIDSSLTDIACFIIDQR  133 (173)
Q Consensus        94 ~Ll~~~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  133 (173)
                      +|++.|+...  +..+..+.||++.|+++|+.+++++|++.|
T Consensus       179 ~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         179 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            8888776541  122344667777777788888888777654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-24  Score=134.86  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=98.9

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCC-CcHHHHHHhcC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG-NTPLHNAVRNK   87 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~a~~~~   87 (173)
                      -+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++            ..+..+ .+|||+|+..|
T Consensus        14 G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~------------~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_          14 GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN------------CADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC------------CCCTTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccc------------cccccccccccccccccc
Confidence            4789999999999999999999999999775 699999999999998863            445555 47999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHh
Q 030660           88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID  131 (173)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  131 (173)
                      +.+++++|++.|+++ +.++..|+||+|+|+++|+.+++++|+.
T Consensus        81 ~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999988 8899999999999999999999999974

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-23  Score=135.27  Aligned_cols=121  Identities=16%  Similarity=0.148  Sum_probs=113.9

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 030660           33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT  112 (173)
Q Consensus        33 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  112 (173)
                      +|||+|+..|+.++|++|++.|+++            +..|..|.||||.|+ .++.+++++|++.++++ +..+..|.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~------------n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~   68 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV------------NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFA   68 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT------------TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc------------CccCCcccccccccc-ccccccccccccccccc-ccccccCcc
Confidence            7999999999999999999999885            467889999999875 78999999999999998 888999999


Q ss_pred             HHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660          113 PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  168 (173)
Q Consensus       113 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  168 (173)
                      +++.++..+..++++.+++.+ .+++..+..|.+|+++|+..++.+++++|+++++
T Consensus        69 ~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          69 VIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            999999999999999999998 8899999999999999999999999999999987

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=4.1e-24  Score=131.80  Aligned_cols=94  Identities=19%  Similarity=0.174  Sum_probs=90.2

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660           77 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  156 (173)
Q Consensus        77 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  156 (173)
                      .|||++|+..|+.+++++|++.|+++ +..+..|+||+|+|+..++.+++++|+++| ++++..|..|.||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccc-ceeeecccccccchhhhhhcCc
Confidence            37999999999999999999999988 888999999999999999999999999999 9999999999999999999999


Q ss_pred             CcHHHHHHhcccccCC
Q 030660          157 YGEPMIFISLNKCLSI  172 (173)
Q Consensus       157 ~~~~~~ll~~~~~~~~  172 (173)
                      .+++++|+++|+++++
T Consensus        81 ~~~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          81 VSCVKLLLSKGADKTV   96 (118)
T ss_dssp             CHHHHHHHTTCCCSSS
T ss_pred             hhhhhhhhccccccee
Confidence            9999999999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.7e-23  Score=132.45  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=101.7

Q ss_pred             chHHHHHHHHhcccchhcc------CCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcH
Q 030660            9 MDHELLNVLRRRDSLLRKN------NWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTP   79 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~------~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~   79 (173)
                      .++..+..++..|.+++..      +..|+||||+|++.   ++.+++++|+++|+++            +..+..|.||
T Consensus        17 ~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi------------n~~d~~g~Tp   84 (154)
T d1dcqa1          17 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------------DKQTGKGSTA   84 (154)
T ss_dssp             TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------------TCCCTTCCCH
T ss_pred             CCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh------------hhhhhhhccc
Confidence            3566677777788776655      67899999999975   6789999999999885            4678899999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccc
Q 030660           80 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH  139 (173)
Q Consensus        80 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  139 (173)
                      ||+|+..|+.+++++|+++|+++ +.++..|.||+|+|++.++.+++++|++.+....+.
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~  143 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS  143 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred             cccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCc
Confidence            99999999999999999999999 889999999999999999999999999876444443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.5e-24  Score=132.48  Aligned_cols=112  Identities=21%  Similarity=0.270  Sum_probs=99.1

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH   88 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~   88 (173)
                      -+.+++++|+++|.+++.+|..|+||||+|+..++.+++++|++.|+++            +..|..|+||||+|+..|+
T Consensus        12 G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~------------~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1          12 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV------------NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             TCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT------------TCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccccc------------ccccccCcccccccchhhH
Confidence            4688999999999999999999999999999999999999999999875            4678899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCC-CCCCCHHHHH--HhcCcHHHHHHHHhcC
Q 030660           89 ENVVRMLVKKDRIPLGYLN-NAEQTPLSIA--IDSSLTDIACFIIDQR  133 (173)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~  133 (173)
                      .+++++|+++|+++ +..+ ..+.||++.+  ++.|+.+++++|+...
T Consensus        80 ~~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999988 5444 5688887765  4668899999998643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-24  Score=146.08  Aligned_cols=130  Identities=20%  Similarity=0.202  Sum_probs=96.6

Q ss_pred             CCCcHHHHHHHhCCHHHHHHH----HhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 030660           30 KGETPLHIAARVGDPAIVSTI----LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  105 (173)
Q Consensus        30 ~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  105 (173)
                      +|.||||+|+..|+.+++..+    ...++++            +.++..|.||||+|+..++.+++++|++.|+++ +.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i------------n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~   67 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL------------NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-EL   67 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC------------CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc------------ccCCCCCCccccccccccccccccccccccccc-cc
Confidence            589999999999997655544    4455553            467778888888888888888888888888877 66


Q ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHh---------------------------------------cCCCccccc-CCCCC
Q 030660          106 LNNAEQTPLSIAIDSSLTDIACFIID---------------------------------------QRPESLNHR-LPEEL  145 (173)
Q Consensus       106 ~~~~g~t~l~~a~~~~~~~~~~~Ll~---------------------------------------~~~~~~~~~-~~~g~  145 (173)
                      .+..|.||++.++..+..++++.+++                                       .+ ..++.. +..|.
T Consensus        68 ~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~G~  146 (221)
T d1iknd_          68 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGR  146 (221)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCC
T ss_pred             cccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccC-cccccccccCCC
Confidence            66666666666666665555555544                                       43 333333 45799


Q ss_pred             cHHHHHHHhCCCcHHHHHHhcccccCCC
Q 030660          146 TLLHSAVMRQNYGEPMIFISLNKCLSIV  173 (173)
Q Consensus       146 t~l~~a~~~~~~~~~~~ll~~~~~~~~~  173 (173)
                      ||||+|+..|+.+++++|+++|+++++.
T Consensus       147 T~L~~A~~~g~~~~v~~Ll~~gad~~~~  174 (221)
T d1iknd_         147 TALHLAVDLQNPDLVSLLLKCGADVNRV  174 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCSCCC
T ss_pred             CccccccccccHHHHHHHHhcCCccccc
Confidence            9999999999999999999999998763

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=1.9e-26  Score=166.68  Aligned_cols=133  Identities=14%  Similarity=0.109  Sum_probs=110.1

Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHH---HHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 030660           24 LRKNNWKGETPLHIAARVGDPAIVST---ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  100 (173)
Q Consensus        24 ~~~~~~~g~t~L~~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  100 (173)
                      ++.++..|.|||++|+..|+.+++++   |++.|+++            +..+..|+||||+|+..|+.+++++|++.|+
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i------------n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~  150 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV------------KVIQAENYQAFRLAAENGHLHVLNRLCELAP  150 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC------------C--CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc------------cccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            34567789999999999999888776   67888774            4678889999999999999999999999998


Q ss_pred             CCCCCCC--CCCCCHHHHHHhcCcHHHHHHHHhcCCCcc---cccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660          101 IPLGYLN--NAEQTPLSIAIDSSLTDIACFIIDQRPESL---NHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  170 (173)
Q Consensus       101 ~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  170 (173)
                      ++ +..+  ..|.||||+|+.+|+.+++++|++.+ +..   +..+..+.||++.|+..|+.+++++|++.|+++
T Consensus       151 ~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         151 TE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             TT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             Cc-cccccccCCCChhHHHHHHhhHHHHHHHHHcC-CcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            87 5443  46999999999999999999999988 443   334456788989999999999999999999865

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.6e-23  Score=131.39  Aligned_cols=124  Identities=17%  Similarity=0.130  Sum_probs=111.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHhh-CcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCC
Q 030660           33 TPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ  111 (173)
Q Consensus        33 t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  111 (173)
                      ..|+.|+..|+.++|++|++. +.+            ++..|..|+||||+|+. ++.+++.+|+..+.++ +..+..|.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~------------~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~   69 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH------------PDALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGT   69 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC------------TTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC------------CCccCCCCCcccccccc-cccccccccccccccc-cccccccc
Confidence            469999999999999999986 444            34678899999999875 7889999999999988 88888999


Q ss_pred             CHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660          112 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  172 (173)
Q Consensus       112 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  172 (173)
                      +|++.++..++.++++++++++ ++++..|..|.||||+|+..|+.+++++|+ .|+++++
T Consensus        70 ~~l~~~~~~~~~~~~~~~l~~~-~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~  128 (156)
T d1bd8a_          70 SPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR  128 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC
T ss_pred             cccccccccccccccccccccc-cccccccCCCCeeecccccccccccccccc-ccccccc
Confidence            9999999999999999999999 899999999999999999999999999887 6788764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.6e-23  Score=144.52  Aligned_cols=128  Identities=20%  Similarity=0.150  Sum_probs=100.3

Q ss_pred             chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCH-------HHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHH
Q 030660            9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDP-------AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH   81 (173)
Q Consensus         9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~   81 (173)
                      -+.+++++|+++|++++.+|+.|+||||.||..++.       ++++++....               ...+..|+||||
T Consensus       118 g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~---------------~~~d~~g~t~lh  182 (301)
T d1sw6a_         118 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL---------------ILEDSMNRTILH  182 (301)
T ss_dssp             TCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG---------------GEECTTCCCHHH
T ss_pred             CCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhh---------------hhcccccCCHHH
Confidence            467899999999999999999999999999987642       3344443322               356888999999


Q ss_pred             HHHhcCCH----H--------HHHHHHhcCCCC------------------------------------CCCCCCCCCCH
Q 030660           82 NAVRNKHE----N--------VVRMLVKKDRIP------------------------------------LGYLNNAEQTP  113 (173)
Q Consensus        82 ~a~~~~~~----~--------~~~~Ll~~~~~~------------------------------------~~~~~~~g~t~  113 (173)
                      .++..+..    .        ++.++...+...                                    .+.+|..|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence            88764432    2        233333333221                                    26678899999


Q ss_pred             HHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 030660          114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV  152 (173)
Q Consensus       114 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  152 (173)
                      ||+|++.|+.+++++|+++| ++++..|..|.|||++|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999 999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-19  Score=125.87  Aligned_cols=114  Identities=21%  Similarity=0.235  Sum_probs=94.8

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHhh-CcccCCCCCCCC-------------------------CccccccCCCCCcHH
Q 030660           27 NNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESEP-------------------------ESLLRITDDEGNTPL   80 (173)
Q Consensus        27 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~-------------------------~~~~~~~~~~g~t~l   80 (173)
                      .+..|.||||+|++.|+.+++++|++. |++++.....+.                         +..++.++..|.|||
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L  223 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCcc
Confidence            344688899999999999999998865 666655444332                         333456788999999


Q ss_pred             HHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCC
Q 030660           81 HNAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP  142 (173)
Q Consensus        81 ~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  142 (173)
                      |.|+..++.+++++|++. |.++ +.++.+|.||||+|+++++.+++++|+++| +++|..|.
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~di-n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G-Ad~n~~d~  284 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             chhhhcCcHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcccC
Confidence            999999999999999986 6666 889999999999999999999999999999 99998763

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=1.1e-19  Score=121.82  Aligned_cols=105  Identities=22%  Similarity=0.273  Sum_probs=97.7

Q ss_pred             HHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHH
Q 030660           12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV   91 (173)
Q Consensus        12 ~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~   91 (173)
                      ...+.|.+.+.+++.++..|+|||+.++..+..++++.+++.+.++            +..|..|.||||.|+..|+.++
T Consensus       104 ~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~------------~~~d~~g~TpL~~A~~~g~~~~  171 (209)
T d1ot8a_         104 GMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR------------DAQDDKDETPLFLAAREGSYEA  171 (209)
T ss_dssp             THHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc------------cccccccccccchhccccHHHH
Confidence            4577788999999999999999999999999999999999999874            4678899999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHH
Q 030660           92 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI  129 (173)
Q Consensus        92 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  129 (173)
                      +++|++.|+++ +..+..|+||||+|+++|+.+++++|
T Consensus       172 v~~Ll~~gad~-n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         172 SKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999998 88999999999999999999999976