Citrus Sinensis ID: 030676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHcccccccEEEEEEEEcccccccccEEcccccccccccccccEEEEEEEcccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEccccccccHHHHccccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEccccccHHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHHHcccccHHHcEEEEEEEEEEEEEccEEEEHHHEEEEccEEEEEEEEEEEccccccccccHHHHHHHcccc
Coil and Loop (DISEMBL)
mvkyskepdnptksckargsdlrvhfKNTRETAHAIRKLPLTKAKRYLEDVMAHKqaipftrfcggvgrtaqaknrhpngqgrwpvKSAKFILDLLKNaesnaevkgldvdALYISHIQVNQAQKQRRRTYrahgrinpymsspchieltlsekeepvkkepetqlatskskk
Flexible Loop (DISEMBL)
mvkyskepdnptksckargsdlrvhfkntretahairklplTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAknrhpngqgrwpvKSAKFILDLLKNAESNAEVKGLDVDALYISHIQvnqaqkqrRRTYRAhgrinpymsspCHIELtlsekeepvkkepetqlatskskk
Low Complexity Region (SEG)
MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSekeepvkkepeTQLATSKSKK
Disordered region (IsUnstruct)
*************************F***RETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTA**********GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA*******YRAHGRINPY****CH***************************
Disordered Region (DISOPRED)
**KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE********************
Disordered Region (DISEMBL)
***************KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV***********RAHGRINPYMSSPCHIELTLSE********************
Disordered Region (DISPRO)
****************ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPV***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
P51413	175	60S ribosomal protein L17	yes	no	0.994	0.982	0.913	2e-90
Q93VI3	176	60S ribosomal protein L17	yes	no	0.994	0.977	0.907	7e-90
O48557	171	60S ribosomal protein L17	N/A	no	0.982	0.994	0.858	5e-84
P35266	170	60S ribosomal protein L17	N/A	no	0.965	0.982	0.856	9e-83
P35267	172	60S ribosomal protein L17	N/A	no	0.988	0.994	0.818	1e-80
P37380	183	60S ribosomal protein L17	N/A	no	0.907	0.857	0.740	2e-63
P18621	184	60S ribosomal protein L17	no	no	0.953	0.896	0.682	2e-61
Q5XTY7	184	60S ribosomal protein L17	N/A	no	0.953	0.896	0.682	2e-61
P24049	184	60S ribosomal protein L17	yes	no	0.953	0.896	0.682	4e-61
Q3T025	184	60S ribosomal protein L17	yes	no	0.953	0.896	0.682	4e-61

>sp|P51413|RL172_ARATH 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2

 Score =  331 bits (848), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 158/173 (91%), Positives = 165/173 (95%), Gaps = 1/173 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKEPETQLA +KSKK
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1

 Score =  328 bits (842), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 157/173 (90%), Positives = 165/173 (95%), Gaps = 1/173 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKEPETQLA +KSKK
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172

Arabidopsis thaliana (taxid: 3702)

>sp|O48557|RL17_MAIZE 60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1

 Score =  309 bits (792), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 146/170 (85%), Positives = 156/170 (91%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPLTKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSK 170
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

Zea mays (taxid: 4577)

>sp|P35266|RL171_HORVU 60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1

 Score =  305 bits (781), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 143/167 (85%), Positives = 152/167 (91%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLA 167
           NQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

Hordeum vulgare (taxid: 4513)

>sp|P35267|RL172_HORVU 60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1

 Score =  298 bits (763), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/171 (81%), Positives = 153/171 (89%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS++P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKS 171
           NQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE +  +A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRKA 171

Hordeum vulgare (taxid: 4513)

>sp|P37380|RL17_PODCA 60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/158 (74%), Positives = 133/158 (84%), Gaps = 1/158 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           M KYS +P+NP KSCKARGS LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPF
Sbjct: 1   MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCGGVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQV
Sbjct: 61  RRFCGGVGRKAQAKA-FKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPV 158
           N+A   RRRTYRAHGRINPYMSSPCHIE+ +SEKE+ V
Sbjct: 120 NRAPYMRRRTYRAHGRINPYMSSPCHIEMIVSEKEQVV 157

Podocoryne carnea (taxid: 6096)

>sp|P18621|RL17_HUMAN 60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 137/167 (82%), Gaps = 2/167 (1%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLA 167
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K PE ++A
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK-PEEEVA 165

Homo sapiens (taxid: 9606)

>sp|Q5XTY7|RL17_FELCA 60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 137/167 (82%), Gaps = 2/167 (1%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLA 167
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K PE ++A
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK-PEEEVA 165

Felis catus (taxid: 9685)

>sp|P24049|RL17_RAT 60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3

 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 137/167 (82%), Gaps = 2/167 (1%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLA 167
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K PE ++A
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK-PEEEVA 165

Rattus norvegicus (taxid: 10116)

>sp|Q3T025|RL17_BOVIN 60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3

 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 137/167 (82%), Gaps = 2/167 (1%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLA 167
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K PE ++A
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK-PEEEVA 165

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
449435065	183	PREDICTED: 60S ribosomal protein L17-2-l	1.0	0.945	0.942	1e-93
255547740	1086	protein with unknown function [Ricinus c	1.0	0.159	0.919	1e-93
147838177	183	hypothetical protein VITISV_011749 [Viti	1.0	0.945	0.942	3e-93
224107601	174	predicted protein [Populus trichocarpa]	0.994	0.988	0.953	3e-93
330318574	186	ribosomal petrp-like protein [Camellia s	1.0	0.930	0.947	7e-93
225425462	185	PREDICTED: 60S ribosomal protein L17-2-l	1.0	0.935	0.936	1e-92
313586529	177	60S ribosomal protein L17B [Hevea brasil	1.0	0.977	0.936	3e-92
313586527	183	60S ribosomal protein L17A [Hevea brasil	1.0	0.945	0.936	4e-92
351723867	181	uncharacterized protein LOC100305777 [Gl	0.994	0.950	0.941	4e-92
297738428	204	unnamed protein product [Vitis vinifera]	1.0	0.848	0.930	6e-92

>gi|449435065|ref|XP_004135316.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] gi|449494927|ref|XP_004159685.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus]

 Score =  347 bits (889), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 163/173 (94%), Positives = 168/173 (97%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCGGVGRTAQAKNRH NGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKEPETQLATSKSKK
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547740|ref|XP_002514927.1| protein with unknown function [Ricinus communis] gi|223545978|gb|EEF47481.1| protein with unknown function [Ricinus communis]

 Score =  347 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 159/173 (91%), Positives = 165/173 (95%)

Query: 1    MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
            +VKYS+EP+NPTKSCKARGSDLRVHFKNTRETA A+RKLPLTKAKRYLEDVMAHKQAIPF
Sbjct: 903  LVKYSREPENPTKSCKARGSDLRVHFKNTRETAFALRKLPLTKAKRYLEDVMAHKQAIPF 962

Query: 61   TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
             RFCGGVGRTAQAKNRH NGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV
Sbjct: 963  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 1022

Query: 121  NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
            NQAQKQRRRTYRAHGRINPYMSSPCHIEL L+EKEE V+KEPETQLATS   K
Sbjct: 1023 NQAQKQRRRTYRAHGRINPYMSSPCHIELILAEKEEAVRKEPETQLATSNKPK 1075

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838177|emb|CAN74145.1| hypothetical protein VITISV_011749 [Vitis vinifera]

 Score =  345 bits (886), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 163/173 (94%), Positives = 168/173 (97%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+ HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFC GVGRTAQAKNRH NGQGRWPVKSAKFILDLLKNAESNA++KGLDVD+LYISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKEPETQLATSKSKK
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107601|ref|XP_002314532.1| predicted protein [Populus trichocarpa] gi|222863572|gb|EEF00703.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (885), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 164/172 (95%), Positives = 167/172 (97%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           VKYS+EPDNPTKSCKARGSDLRVHFKNTRETA A+RKLPL KAKRYLEDVMAHKQAIPF 
Sbjct: 2   VKYSREPDNPTKSCKARGSDLRVHFKNTRETAFALRKLPLVKAKRYLEDVMAHKQAIPFR 61

Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           RFCGGVGRTAQAKNRH NGQGRWP KSAKFILDLLKNAESNAEVKGLDVDALYI+HIQVN
Sbjct: 62  RFCGGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYITHIQVN 121

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK
Sbjct: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318574|gb|AEC10957.1| ribosomal petrp-like protein [Camellia sinensis]

 Score =  344 bits (883), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 164/173 (94%), Positives = 166/173 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFC GVGRTAQAKNRH NGQGRWPVKSA FILDLLKNAESNAEVKGLDVD LYISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAGFILDLLKNAESNAEVKGLDVDTLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKEPE+QLATSKS K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKSSK 173

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425462|ref|XP_002279258.1| PREDICTED: 60S ribosomal protein L17-2-like [Vitis vinifera]

 Score =  343 bits (881), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 162/173 (93%), Positives = 167/173 (96%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+ HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFC GVGRTAQAKNRH NGQGRWPVKSAKFILDLLKNAESNA++KGLDVD+LYISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKEPETQLAT KSKK
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKK 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586529|gb|ADR71275.1| 60S ribosomal protein L17B [Hevea brasiliensis]

 Score =  342 bits (877), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/173 (93%), Positives = 166/173 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EP+N TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDVMAHKQAIPF
Sbjct: 1   MVKYSREPENQTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCGGVGRTAQAKNRH NGQGRWP KSAKFILDLLKNAESNAEVKGLDVD L+ISHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDNLFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKEPETQLATSKSKK
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK 173

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586527|gb|ADR71274.1| 60S ribosomal protein L17A [Hevea brasiliensis]

 Score =  342 bits (877), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 162/173 (93%), Positives = 165/173 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EP+N TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDVMAHKQAIPF
Sbjct: 1   MVKYSREPENATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCGGVGRTAQAKNRH NGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L ISHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKEPETQLA SKSKK
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKK 173

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723867|ref|NP_001236526.1| uncharacterized protein LOC100305777 [Glycine max] gi|255626585|gb|ACU13637.1| unknown [Glycine max]

 Score =  342 bits (876), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 162/172 (94%), Positives = 165/172 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARG+DLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCGGVGRTAQAKNRH NGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSK 172
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE ETQLATSK K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEAETQLATSKKK 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738428|emb|CBI27629.3| unnamed protein product [Vitis vinifera]

 Score =  341 bits (875), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 161/173 (93%), Positives = 167/173 (96%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARG DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+ HKQAIPF
Sbjct: 22  MVKYSREPDNPTKSCKARGLDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 81

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFC GVGRTAQAKNRH NGQGRWPVKSAK+ILDLLKNAESNA++KGLDVD+LYISHIQV
Sbjct: 82  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKYILDLLKNAESNADLKGLDVDSLYISHIQV 141

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKEPETQLATSKSKK
Sbjct: 142 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2197624	175	AT1G67430 [Arabidopsis thalian	0.994	0.982	0.849	1.5e-74
TAIR|locus:2015929	176	AT1G27400 [Arabidopsis thalian	0.994	0.977	0.843	4e-74
ZFIN|ZDB-GENE-030131-8585	184	rpl17 "ribosomal protein L17"	0.872	0.820	0.697	1.6e-54
UNIPROTKB|E2R3D3	184	LOC474501 "Uncharacterized pro	0.872	0.820	0.697	1.1e-53
UNIPROTKB|J3KRX5	174	RPL17 "60S ribosomal protein L	0.872	0.867	0.697	1.1e-53
UNIPROTKB|J3QL51	228	RPL17 "60S ribosomal protein L	0.872	0.662	0.697	1.1e-53
UNIPROTKB|J3QQT2	171	RPL17 "60S ribosomal protein L	0.872	0.883	0.697	1.1e-53
UNIPROTKB|P18621	184	RPL17 "60S ribosomal protein L	0.872	0.820	0.697	1.1e-53
UNIPROTKB|F1NG53	187	RPL17 "Uncharacterized protein	0.872	0.807	0.697	1.5e-53
UNIPROTKB|H9L213	184	RPL17 "Uncharacterized protein	0.872	0.820	0.697	1.5e-53

TAIR|locus:2197624 AT1G67430 [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 147/173 (84%), Positives = 154/173 (89%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct:     1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
             TRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct:    61 TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 173
             NQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA +KSKK
Sbjct:   121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2015929 AT1G27400 [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 146/173 (84%), Positives = 154/173 (89%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct:     1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
             TRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct:    61 TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 173
             NQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA +KSKK
Sbjct:   121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

ZFIN|ZDB-GENE-030131-8585 rpl17 "ribosomal protein L17" [Danio rerio (taxid:7955)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 106/152 (69%), Positives = 128/152 (84%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV+   Q +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKANKYLKDVIVKHQCVPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+ GGVGR AQAK +H   QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAK-QHDWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E2R3D3 LOC474501 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 106/152 (69%), Positives = 126/152 (82%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J3KRX5 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 106/152 (69%), Positives = 126/152 (82%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|J3QL51 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 106/152 (69%), Positives = 126/152 (82%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|J3QQT2 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 106/152 (69%), Positives = 126/152 (82%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|P18621 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 106/152 (69%), Positives = 126/152 (82%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1NG53 RPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 106/152 (69%), Positives = 126/152 (82%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct:     4 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 63

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    64 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 122

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   123 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 154

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|H9L213 RPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 106/152 (69%), Positives = 126/152 (82%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5I5J1	RL17_PECGU	No assigned EC number	0.6125	0.9190	0.8688	N/A	no
Q9HE25	RL17_NEUCR	No assigned EC number	0.5937	0.9190	0.8548	N/A	no
Q46GA0	RL22_METBF	No assigned EC number	0.3947	0.8439	0.9668	yes	no
O59794	RL17B_SCHPO	No assigned EC number	0.6164	0.8381	0.7754	yes	no
Q54NG2	RL17_DICDI	No assigned EC number	0.6130	0.9653	0.9277	yes	no
Q6BM53	RL17_DEBHA	No assigned EC number	0.5757	0.9479	0.8864	yes	no
Q8PV45	RL22_METMA	No assigned EC number	0.3947	0.8439	0.9668	yes	no
P0DJ16	RL17_TETTS	No assigned EC number	0.5812	0.8959	0.8469	N/A	no
Q93VI3	RL171_ARATH	No assigned EC number	0.9075	0.9942	0.9772	yes	no
O48557	RL17_MAIZE	No assigned EC number	0.8588	0.9826	0.9941	N/A	no
P51413	RL172_ARATH	No assigned EC number	0.9132	0.9942	0.9828	yes	no
Q5MGD1	RL17_LONON	No assigned EC number	0.6706	0.9595	0.8877	N/A	no
A0NGY0	RL17_ANOGA	No assigned EC number	0.675	0.9190	0.8502	yes	no
P24049	RL17_RAT	No assigned EC number	0.6826	0.9537	0.8967	yes	no
Q29IM3	RL17_DROPS	No assigned EC number	0.65	0.9190	0.8548	yes	no
Q4UF75	RL17_THEAN	No assigned EC number	0.5722	0.9942	0.9197	yes	no
Q3T025	RL17_BOVIN	No assigned EC number	0.6826	0.9537	0.8967	yes	no
Q0PXV9	RL17_DIACI	No assigned EC number	0.6545	0.9479	0.8864	N/A	no
A8CAG3	RL17_PHLPP	No assigned EC number	0.6687	0.9190	0.8548	N/A	no
Q4GXH5	RL17_CARGR	No assigned EC number	0.6455	0.9075	0.8626	N/A	no
Q4GXH6	RL17_BIPLU	No assigned EC number	0.6477	0.9942	0.9502	N/A	no
Q4GXH7	RL17_AGRLI	No assigned EC number	0.6709	0.8901	0.8191	N/A	no
Q4KTG9	RL17_SUBDO	No assigned EC number	0.6956	0.9248	0.8376	N/A	no
A8AA19	RL22_IGNH4	No assigned EC number	0.3972	0.8439	0.9182	yes	no
A5UL84	RL22_METS3	No assigned EC number	0.3866	0.8439	0.9480	yes	no
Q09JW2	RL17_ARGMO	No assigned EC number	0.6962	0.9075	0.8486	N/A	no
A2I3Y6	RL17_MACHI	No assigned EC number	0.6437	0.9190	0.8594	N/A	no
P46990	RL17B_YEAST	No assigned EC number	0.6024	0.9537	0.8967	yes	no
Q6MY48	RL17_ASPFU	No assigned EC number	0.5828	0.9364	0.8350	yes	no
O14339	RL17A_SCHPO	No assigned EC number	0.6232	0.8381	0.7754	yes	no
A3DNB2	RL22_STAMF	No assigned EC number	0.3815	0.8554	0.9426	yes	no
O28359	RL22_ARCFU	No assigned EC number	0.3825	0.8439	0.9419	yes	no
Q8TRU2	RL22_METAC	No assigned EC number	0.375	0.8439	0.9668	yes	no
Q4N4B9	RL17_THEPA	No assigned EC number	0.5878	0.9479	0.8770	yes	no
P05740	RL17A_YEAST	No assigned EC number	0.6084	0.9537	0.8967	yes	no
Q9BL19	RL17_CAEEL	No assigned EC number	0.6792	0.9132	0.8449	yes	no
Q5XTY7	RL17_FELCA	No assigned EC number	0.6826	0.9537	0.8967	N/A	no
P35266	RL171_HORVU	No assigned EC number	0.8562	0.9653	0.9823	N/A	no
P35267	RL172_HORVU	No assigned EC number	0.8187	0.9884	0.9941	N/A	no
P37380	RL17_PODCA	No assigned EC number	0.7405	0.9075	0.8579	N/A	no
Q6XJ13	RL17_DROYA	No assigned EC number	0.6562	0.9190	0.8548	N/A	no
Q12ZU6	RL22_METBU	No assigned EC number	0.4013	0.8439	0.9668	yes	no
Q9CPR4	RL17_MOUSE	No assigned EC number	0.6826	0.9537	0.8967	yes	no
Q1HR65	RL17_AEDAE	No assigned EC number	0.6607	0.9537	0.8870	N/A	no
Q4PM54	RL17_IXOSC	No assigned EC number	0.7025	0.9075	0.8486	N/A	no
Q6CBS7	RL17_YARLI	No assigned EC number	0.5780	0.9942	0.9347	yes	no
Q9W3W8	RL17_DROME	No assigned EC number	0.6347	0.9595	0.8924	yes	no
Q5UAS2	RL17_BOMMO	No assigned EC number	0.6766	0.9595	0.8877	N/A	no
Q5MIR6	RL17_AEDAL	No assigned EC number	0.6607	0.9537	0.8870	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.4789.1	SubName- Full=Putative uncharacterized protein; (174 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.1845.1.1	60S ribosomal protein L4/L1 (RPL4D) (408 aa)	•			•	•				0.649
	estExt_Genewise1_v1.C_280409	SubName- Full=Putative uncharacterized protein; (408 aa)	•			•	•				0.648
	estExt_Genewise1_v1.C_LG_XVI2622	60S ribosomal protein L4/L1 (RPL4D) (407 aa)	•			•	•				0.628
	estExt_fgenesh4_pg.C_LG_VII0552	SubName- Full=Putative uncharacterized protein; (146 aa)	•			•	•		•		0.621
	estExt_fgenesh4_pm.C_LG_III0216	SubName- Full=Putative uncharacterized protein; (146 aa)	•			•	•		•		0.620
	estExt_fgenesh4_pg.C_LG_V0222	SubName- Full=Putative uncharacterized protein; (147 aa)	•			•	•		•		0.611
	estExt_fgenesh4_kg.C_LG_II0054	SubName- Full=Putative uncharacterized protein; (159 aa)	•			•	•		•		0.598
	estExt_fgenesh4_pg.C_LG_X1707	RecName- Full=60S acidic ribosomal protein P0; (321 aa)				•	•	•			0.596
	grail3.0040004901	SubName- Full=Putative uncharacterized protein; (159 aa)	•			•	•		•		0.597
	estExt_fgenesh4_pm.C_LG_VIII0253	RecName- Full=60S acidic ribosomal protein P0; (323 aa)				•	•	•	•		0.594

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
PTZ00178	181	PTZ00178, PTZ00178, 60S ribosomal protein L17; Pro	5e-93
TIGR01038	150	TIGR01038, L22_arch, ribosomal protein L22(archaea	5e-67
PRK04223	153	PRK04223, rpl22p, 50S ribosomal protein L22P; Revi	2e-46
cd00336	105	cd00336, Ribosomal_L22, Ribosomal protein L22/L17e	3e-38
pfam00237	105	pfam00237, Ribosomal_L22, Ribosomal protein L22p/L	3e-33
COG0091	120	COG0091, RplV, Ribosomal protein L22 [Translation,	3e-31
PRK00565	112	PRK00565, rplV, 50S ribosomal protein L22; Reviewe	2e-10
CHL00034	117	CHL00034, rpl22, ribosomal protein L22	6e-06
PRK12279	311	PRK12279, PRK12279, 50S ribosomal protein L22/unkn	8e-05

>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional

 Score =  267 bits (685), Expect = 5e-93
 Identities = 111/172 (64%), Positives = 136/172 (79%), Gaps = 1/172 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKY+++P NP+KS KA+GSDLRVHFKNT ETA AI+ + L +A++YLEDV+A K+ +PF
Sbjct: 1   MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF GGVGRTAQAK    + QGRWP KS KF+L LLKNAE+NAE KGLDV+ L ISH+QV
Sbjct: 61  RRFNGGVGRTAQAKE-FGHTQGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSK 172
           N+A + RRRTYRAHGRINP+MSSPCHIEL  +EK+E V K  E     +K +
Sbjct: 120 NRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPKPKEAPKKQTKKQ 171

Length = 181

>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

 Score =  200 bits (511), Expect = 5e-67
 Identities = 87/151 (57%), Positives = 106/151 (70%), Gaps = 1/151 (0%)

Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRF 63
           YS +P++PTKS KARG +LRV FKN RETA AIR + L KA++YLEDV+  K+A+PF R+
Sbjct: 1   YSYKPEDPTKSAKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRY 60

Query: 64  CGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
            G VG     K       GR+PVK+AKFIL +L+NAE+NAE KGLDV+ L I HIQ N+ 
Sbjct: 61  NGKVGHRRGLKEWGW-TAGRYPVKAAKFILKVLQNAEANAEYKGLDVEKLVIIHIQANKG 119

Query: 124 QKQRRRTYRAHGRINPYMSSPCHIELTLSEK 154
            K RR   RA GR  PY SSP HIEL + EK
Sbjct: 120 PKIRRWMPRAFGRATPYNSSPTHIELVVEEK 150

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 150

>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed

 Score =  148 bits (377), Expect = 2e-46
 Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 14/158 (8%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
            + YS + D P K+ KA G +L +  K++ E A  IR + L +AK YLEDV+A K+A+PF
Sbjct: 3   RINYSVKAD-PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPF 61

Query: 61  TRFCGGVGRTAQAKNRHPNGQ-----GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYI 115
            R    VG        H  G      GR+PVK+AK  L LL+NAE+NAE KGLD + L I
Sbjct: 62  KRHNKKVG--------HRKGIDGWPAGRYPVKAAKAFLKLLENAEANAEYKGLDTEKLVI 113

Query: 116 SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
            HI  ++ +  +    RA GR  P  +   +IE+ L E
Sbjct: 114 VHIAAHKGRVIKGYMPRAFGRATPKNTETVNIEVILEE 151

Length = 153

>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e

 Score =  126 bits (318), Expect = 3e-38
 Identities = 52/138 (37%), Positives = 63/138 (45%), Gaps = 34/138 (24%)

Query: 15  CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAK 74
            KA+G  LR+  K  R  A  IR + + +A   LE V                       
Sbjct: 1   AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFV----------------------- 37

Query: 75  NRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGL-DVDALYISHIQVNQAQKQRRRTYRA 133
                     P K+AK IL LLK+AE+NAE  GL D D LYI HIQVN+    +RR  RA
Sbjct: 38  ----------PKKAAKIILKLLKSAEANAENNGLDDPDKLYIKHIQVNKGPTLKRRRPRA 87

Query: 134 HGRINPYMSSPCHIELTL 151
            GR NP     CHI + L
Sbjct: 88  RGRANPIRKRTCHITVVL 105

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome. Length = 105

>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e

 Score =  113 bits (286), Expect = 3e-33
 Identities = 45/138 (32%), Positives = 56/138 (40%), Gaps = 34/138 (24%)

Query: 17  ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNR 76
           A    +R+  K  R  A  IR   + +A   LE V                         
Sbjct: 1   AVARYIRISPKKARLVADLIRGKSVEEALAILEFV------------------------- 35

Query: 77  HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHG 135
                   P K+AK IL LLK+A +NAE  KGLD D LYI  I V++    +R   RA G
Sbjct: 36  --------PKKAAKIILKLLKSAVANAENNKGLDPDNLYIKEIFVDKGPTLKRFRPRARG 87

Query: 136 RINPYMSSPCHIELTLSE 153
           R  P      HI + LSE
Sbjct: 88  RATPIRKRTSHITIVLSE 105

This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Length = 105

>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

 Score =  108 bits (273), Expect = 3e-31
 Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 35/154 (22%)

Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRF 63
           YS + + P    KA+   LR+  K  R  A  IR   + +A   LE V            
Sbjct: 1   YSAKVE-PEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFV------------ 47

Query: 64  CGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAE-VKGLDVDALYISHIQVNQ 122
                                P K+AK +  +L++A +NAE  KGLD D L +SHI V++
Sbjct: 48  ---------------------PKKAAKLVKKVLESAIANAENNKGLDPDKLVVSHIAVDK 86

Query: 123 AQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
               +R   RA GR         HI + + EKE+
Sbjct: 87  GPVLKRFMPRARGRATRINKRTSHITVVVREKEK 120

Length = 120

>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed

 Score = 54.7 bits (133), Expect = 2e-10
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
           P K+A+ +  +LK+A +NAE   GLD+D L +    V++    +R   RA GR +     
Sbjct: 40  PKKAARLVKKVLKSAIANAENNHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKR 99

Query: 144 PCHIELTLSEKEE 156
             HI + ++EKEE
Sbjct: 100 TSHITVVVAEKEE 112

Length = 112

>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
           P ++   IL L+ +A +NA    GL+   L+IS  +V++    +R   RA GR  P    
Sbjct: 47  PYRACYPILKLVYSAAANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKP 106

Query: 144 PCHIELTLSEK 154
            CHI + L + 
Sbjct: 107 TCHITIVLKDI 117

Length = 117

>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 85  PVKSAKFILDLLKNAESNAEV--KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS 142
           P K A  +L LL +A SN +   K +D   LYI  I  NQ    +R   RA G  +    
Sbjct: 40  PKKFAPIVLKLLNSAISNVQHNSKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFK 99

Query: 143 SPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
              H+E+ LS+       E E +LA  K+KK
Sbjct: 100 RTTHLEIVLSDD----VNEREKELAAIKAKK 126

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PTZ00178	181	60S ribosomal protein L17; Provisional	100.0
TIGR01038	150	L22_arch ribosomal protein L22(archaeal)/L17(eukar	100.0
PRK04223	153	rpl22p 50S ribosomal protein L22P; Reviewed	100.0
COG0091	120	RplV Ribosomal protein L22 [Translation, ribosomal	100.0
CHL00034	117	rpl22 ribosomal protein L22	100.0
PRK00565	112	rplV 50S ribosomal protein L22; Reviewed	100.0
TIGR01044	103	rplV_bact ribosomal protein L22, bacterial type. T	100.0
PF00237	105	Ribosomal_L22: Ribosomal protein L22p/L17e; InterP	100.0
cd00336	105	Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17	100.0
PRK12279	311	50S ribosomal protein L22/unknown domain fusion pr	100.0
KOG3353	175	consensus 60S ribosomal protein L22 [Translation,	100.0
KOG1711	218	consensus Mitochondrial/chloroplast ribosomal prot	99.92

>PTZ00178 60S ribosomal protein L17; Provisional

Probab=100.00  E-value=2e-57  Score=367.97  Aligned_cols=164  Identities=67%  Similarity=1.065  Sum_probs=158.2

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030676            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG   80 (173)
Q Consensus         1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~   80 (173)
                      ||+||++.+|++++++|..+++++||+|+++||++||||++++|+++|++||++|++|||+||++++||++++.+ ||.+
T Consensus         1 ~~~Ys~~~~n~~~~akA~~~~~riSpkk~r~Va~~IRGk~v~~A~~~L~~Vi~~k~~VPf~r~~~~vgh~~~~~~-~~~~   79 (181)
T PTZ00178          1 MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKE-FGHT   79 (181)
T ss_pred             CCccccCCCCCCceEEEEeCCcccchHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeecCCccccccccc-cccc
Confidence            899999997799999999999999999999999999999999999999999999999999999999999999987 8999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030676           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (173)
Q Consensus        81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~  160 (173)
                      +||||+|+|..|+|+|+||++||+++|+|+|+|||.||.||+|++++|++|||+||++++++++|||+|+|+|.++.+++
T Consensus        80 ~GR~P~KaA~~i~KlL~SA~aNAe~~gld~d~L~I~~i~v~kG~~lKR~~pRA~GRA~~i~k~t~HI~Ivl~e~~~~~~~  159 (181)
T PTZ00178         80 QGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQVNRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPK  159 (181)
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCcccCCCCCccCCCcCcccCCceeEEEEEEEccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888876


Q ss_pred             Ccchh
Q 030676          161 EPETQ  165 (173)
Q Consensus       161 ~~~~~  165 (173)
                      +.+.|
T Consensus       160 ~~~~~  164 (181)
T PTZ00178        160 PKEAP  164 (181)
T ss_pred             chhhh
Confidence            55543

>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

Probab=100.00  E-value=7.1e-56  Score=350.43  Aligned_cols=150  Identities=58%  Similarity=0.871  Sum_probs=147.5

Q ss_pred             ccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCC
Q 030676            4 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGR   83 (173)
Q Consensus         4 y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr   83 (173)
                      ||++++|++++++|..+++++||+|+++||++||||++++|+.+|++|+++|+||||++|++|+||++++.+ |||++||
T Consensus         1 ys~~~~~~~~~akA~~~~~riS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~-~~~~~gR   79 (150)
T TIGR01038         1 YSYKPEDPTKSAKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLKE-WGWTAGR   79 (150)
T ss_pred             CCcCCCCCCeeEEEEeCCCcccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccc-cccccCC
Confidence            999998899999999999999999999999999999999999999999999999999999999999999988 7999999


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeC
Q 030676           84 WPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK  154 (173)
Q Consensus        84 ~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~  154 (173)
                      ||+|+|..|+|+|+||++||+++|+|+|+|||.||+||+|+.+||++|||+||++++++++|||+|+|+|+
T Consensus        80 ~P~Kaa~~i~klL~sA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~prA~GRa~~~~k~~~HI~Iil~e~  150 (150)
T TIGR01038        80 YPVKAAKFILKVLQNAEANAEYKGLDVEKLVIIHIQANKGPKIRRWMPRAFGRATPYNSSPTHIELVVEEK  150 (150)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCCccCCCCCccCCCCCcccCCCceEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999874

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22.

>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed

Probab=100.00  E-value=5.2e-55  Score=346.48  Aligned_cols=151  Identities=42%  Similarity=0.598  Sum_probs=147.3

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030676            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG   80 (173)
Q Consensus         1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~   80 (173)
                      |++||+++ +++++++|.++++++||+|+++||++||||++++|+++|++|+++|+||||++|++|+||++++   +||+
T Consensus         3 ~~~ys~~~-~~~~~akA~~~~~rvS~kk~r~va~~IRG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~---~~~~   78 (153)
T PRK04223          3 RINYSVKA-DPEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHRKGI---DGWP   78 (153)
T ss_pred             ccccccCC-CCCceEEEEeCCCccChHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccc---cccc
Confidence            67899999 6999999999999999999999999999999999999999999999999999999999999987   7899


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCC
Q 030676           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE  155 (173)
Q Consensus        81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~  155 (173)
                      +||||+|+|+.|+|+|+||++||+++|+|+|+|||+||+||+|+.++|++|||+||++++.+++|||+|+|+|.+
T Consensus        79 ~gr~PkKaa~~i~KlL~sA~aNA~~~gld~d~L~I~~i~v~kg~~~kR~~prA~GRa~~~~k~~sHI~Iil~e~~  153 (153)
T PRK04223         79 AGRYPVKAAKAFLKLLENAEANAEYKGLDTEKLVIVHIAAHKGRVIKGYMPRAFGRATPKNTETVNIEVILEEVE  153 (153)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCCCCCCcCcccCCCCCcccCCCceEEEEEEeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999853

>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.3e-41  Score=257.26  Aligned_cols=118  Identities=37%  Similarity=0.483  Sum_probs=114.0

Q ss_pred             ccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCC
Q 030676            4 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGR   83 (173)
Q Consensus         4 y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr   83 (173)
                      ||++.. ++++++|..+++++||+|+++||++||||++++|+.+|+                           |      
T Consensus         1 y~~~~~-~~~~akA~~r~~riSpkk~r~Va~~IrG~~v~~A~~~L~---------------------------~------   46 (120)
T COG0091           1 YSAKVE-PEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILE---------------------------F------   46 (120)
T ss_pred             CCcccc-hhhhhHhhhccCcCChHHHHHHHHHHcCCcHHHHHHHHH---------------------------h------
Confidence            788875 889999999999999999999999999999999999999                           5      


Q ss_pred             CchhhhHHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCC
Q 030676           84 WPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE  155 (173)
Q Consensus        84 ~p~Kaa~~i~k~L~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~  155 (173)
                      .|+|+|+.|+|+|+||++||++ +|||+|+|||.||+||+|+++||++|||+||++++++++|||||+|+|.+
T Consensus        47 ~pkKaa~~v~KvL~sA~aNAe~n~gLd~d~L~V~~i~v~~gp~lKR~~pRA~GRa~~i~k~tshItvvv~e~~  119 (120)
T COG0091          47 VPKKAAKLVKKVLESAIANAENNKGLDPDKLVVSHIAVDKGPVLKRFMPRARGRATRINKRTSHITVVVREKE  119 (120)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHhccCCChHHEEEEEEEeCCCceeeeecccccCccccccCCCceEEEEEeecC
Confidence            7999999999999999999999 79999999999999999999999999999999999999999999999964

>CHL00034 rpl22 ribosomal protein L22

Probab=100.00  E-value=1.3e-38  Score=242.77  Aligned_cols=112  Identities=29%  Similarity=0.401  Sum_probs=107.4

Q ss_pred             CCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhh
Q 030676           10 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSA   89 (173)
Q Consensus        10 ~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa   89 (173)
                      .++++++|..+++++||+|+++||++||||++++|+.||+                           |      .|+|+|
T Consensus         5 ~~~~~~~A~~~~ir~SpkK~r~va~~IRG~~v~~A~~~L~---------------------------~------~pkk~a   51 (117)
T CHL00034          5 KSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILE---------------------------F------MPYRAC   51 (117)
T ss_pred             CCCceEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CcHHHH
Confidence            3568999999999999999999999999999999999999                           5      799999


Q ss_pred             HHHHHHHHHHHHHHH-HcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeC
Q 030676           90 KFILDLLKNAESNAE-VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK  154 (173)
Q Consensus        90 ~~i~k~L~sa~~NA~-~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~  154 (173)
                      +.|+++|+||++||+ ++|+|+|+|||.|++||+|+++||++|||+||++++++++|||+|+|+|.
T Consensus        52 ~~i~klL~sA~aNA~~~~gld~d~L~I~~i~v~~G~~~KR~~prArGRa~~i~k~~sHI~Vvl~e~  117 (117)
T CHL00034         52 YPILKLVYSAAANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKPTCHITIVLKDI  117 (117)
T ss_pred             HHHHHHHHHHHHHHHHccCCCccceEEEEEEECCCCccCCCCcccCCCCCcccCCCccEEEEEecC
Confidence            999999999999995 58999999999999999999999999999999999999999999999873

>PRK00565 rplV 50S ribosomal protein L22; Reviewed

Probab=100.00  E-value=1.9e-38  Score=239.93  Aligned_cols=110  Identities=32%  Similarity=0.424  Sum_probs=106.6

Q ss_pred             ceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHH
Q 030676           13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI   92 (173)
Q Consensus        13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i   92 (173)
                      ++++|..+++++||+|+++||++||||++++|+.||+                           |      ||+|+|..|
T Consensus         1 ~~~~A~~~~~~~SpkK~~~v~~~IrG~~v~~A~~~L~---------------------------~------~pkk~a~~i   47 (112)
T PRK00565          1 MEAKAKARYVRVSPRKARLVADLIRGKKVEEALAILK---------------------------F------SPKKAARLV   47 (112)
T ss_pred             CceEEEeCccccCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CcHhHHHHH
Confidence            3689999999999999999999999999999999999                           5      899999999


Q ss_pred             HHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCC
Q 030676           93 LDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE  155 (173)
Q Consensus        93 ~k~L~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~  155 (173)
                      +++|+||.+||++ +|+|+|+|||.|+|||+|+++||++|||+||++++++++|||+|+|+|.+
T Consensus        48 ~k~L~sA~aNA~~~~g~d~~~L~I~~~~v~~G~~~Kr~~~rArGR~~~i~k~~~hi~vvL~e~~  111 (112)
T PRK00565         48 KKVLKSAIANAENNHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAEKE  111 (112)
T ss_pred             HHHHHHHHHHHHhccCCChhHeEEEEEEECCCCccCCCCCCcCCCCCccccCCccEEEEEEecC
Confidence            9999999999998 89999999999999999999999999999999999999999999999964

>TIGR01044 rplV_bact ribosomal protein L22, bacterial type

Probab=100.00  E-value=1.6e-37  Score=231.97  Aligned_cols=102  Identities=30%  Similarity=0.384  Sum_probs=98.8

Q ss_pred             EeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHHHHH
Q 030676           17 ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLL   96 (173)
Q Consensus        17 A~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~k~L   96 (173)
                      |..+++++||+|+++||++||||+++||+.||+                           |      ||+|+|..|+|+|
T Consensus         1 a~~r~~r~SpkK~~~va~~IrG~~v~~A~~~L~---------------------------f------~pkk~a~~i~klL   47 (103)
T TIGR01044         1 AKARFVRISPRKARLVADLIRGKSVSQALDILR---------------------------F------TPKKAAPLIKKVL   47 (103)
T ss_pred             CcccccccCHHHHHHHHHHHcCCcHHHHHHHHh---------------------------h------CCHhHHHHHHHHH
Confidence            568999999999999999999999999999999                           6      9999999999999


Q ss_pred             HHHHHHHH-HcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEe
Q 030676           97 KNAESNAE-VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL  151 (173)
Q Consensus        97 ~sa~~NA~-~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL  151 (173)
                      +||.+||+ ++|+|+|+|||.|++||+|+++||++|||+||++++++++|||+|+|
T Consensus        48 ~sA~aNA~~~~~ld~~~L~I~~~~v~~G~~~kr~~~rarGRa~~i~k~~~hi~vvl  103 (103)
T TIGR01044        48 ASAIANAEHNYGLDADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITVVV  103 (103)
T ss_pred             HHHHHHHHHccCCChHheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEeC
Confidence            99999996 58999999999999999999999999999999999999999999986

This model decribes bacterial and chloroplast ribosomal protein L22.

>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.3e-36  Score=225.25  Aligned_cols=104  Identities=44%  Similarity=0.561  Sum_probs=100.4

Q ss_pred             EeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHHHHH
Q 030676           17 ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLL   96 (173)
Q Consensus        17 A~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~k~L   96 (173)
                      |..+++++||||++++|++||||++++|+.||++                                 .|+|+|..|+++|
T Consensus         1 A~~~~i~~S~kk~~~v~~~Irg~~v~~A~~~L~~---------------------------------~~~k~a~~i~k~L   47 (105)
T PF00237_consen    1 AKLRNIRISPKKLREVARLIRGMSVDEAIAQLKF---------------------------------VPKKAAKFILKLL   47 (105)
T ss_dssp             EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHH---------------------------------HSSHHHHHHHHHH
T ss_pred             CccccccCCHHHHHHHHHHHcCCCHHHHHHHHHh---------------------------------CcHHHHHHHHhhH
Confidence            6789999999999999999999999999999994                                 6999999999999


Q ss_pred             HHHHHHHH-HcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeee
Q 030676           97 KNAESNAE-VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE  153 (173)
Q Consensus        97 ~sa~~NA~-~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E  153 (173)
                      +||.+||+ ++|+|+|+|||.++|||+|++++|++|||+||++++++++|||+|+|+|
T Consensus        48 ~~a~~nA~~~~g~d~~~L~I~~~~v~~g~~~kr~~~rArGR~~~~~k~~~hi~vvl~E  105 (105)
T PF00237_consen   48 KSAIANAENNKGLDPDNLYISEIWVNKGPYLKRIRPRARGRAGPIRKRTSHITVVLKE  105 (105)
T ss_dssp             HHHHHHHHHHCTSTCGGEEEEEEEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEEEE
T ss_pred             HHHHhhcccccccccCceEEEEEEEEecccccCCCcCcCCCccCeecCceEEEEEEeC
Confidence            99999999 7999999999999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CD6_R 1Q7Y_S 1VQ6_R 1YI2_R 1QVF_Q 3CCR_R 3CCU_R 3CCL_R 1YJ9_R 3CCQ_R ....

>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e

Probab=100.00  E-value=1.1e-34  Score=216.06  Aligned_cols=104  Identities=48%  Similarity=0.664  Sum_probs=99.7

Q ss_pred             EEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHHH
Q 030676           15 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILD   94 (173)
Q Consensus        15 ~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~k   94 (173)
                      ++|..+++++||+|+++||++||||+++||+.||+                           |      .|+|+|..|++
T Consensus         1 ~~a~~~~i~~S~kK~~~v~~~Irg~~v~~A~~~L~---------------------------~------~~kk~a~~i~k   47 (105)
T cd00336           1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLE---------------------------F------VPKKAAKIILK   47 (105)
T ss_pred             CEEEEccCccCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------h------CCHHHHHHHHH
Confidence            47899999999999999999999999999999999                           5      79999999999


Q ss_pred             HHHHHHHHHHHcC-CCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEe
Q 030676           95 LLKNAESNAEVKG-LDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL  151 (173)
Q Consensus        95 ~L~sa~~NA~~kg-ld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL  151 (173)
                      +|+||.+||++++ +|+|+|||.|+|||+|++++|++|||+||++++++++|||+|+|
T Consensus        48 ~l~sa~~nA~~~~~~~~~~L~I~~~~v~~g~~~kr~~~rarGR~~~~~k~~~hi~ivl  105 (105)
T cd00336          48 LLKSAEANAENNGLDDPDKLYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL  105 (105)
T ss_pred             HHHHHHHhHHHcCCCCccceEEEEEEECCCCcccCCCcCCCCCCcccccCceeEEEeC
Confidence            9999999999865 56999999999999999999999999999999999999999986

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.

>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=251.46  Aligned_cols=113  Identities=27%  Similarity=0.397  Sum_probs=107.7

Q ss_pred             ceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHH
Q 030676           13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI   92 (173)
Q Consensus        13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i   92 (173)
                      |+++|..+++++||+|+++||++||||++++|+.+|+                           |      +|+|+|..|
T Consensus         1 M~akA~~r~iriSpkK~R~Va~~IRGk~v~~Al~~L~---------------------------~------~PkKaA~~I   47 (311)
T PRK12279          1 MTNKVIQRNIHISHRKASLVIDLVRNKPVHEAIRILS---------------------------N------TPKKFAPIV   47 (311)
T ss_pred             CceEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------h------CCHHHHHHH
Confidence            4689999999999999999999999999999999999                           5      899999999


Q ss_pred             HHHHHHHHHHHH--HcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccC
Q 030676           93 LDLLKNAESNAE--VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPV  158 (173)
Q Consensus        93 ~k~L~sa~~NA~--~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~  158 (173)
                      +++|+||++||+  ++|+|+|+|||.||+||+|+.+||++|||+||++++++++|||+|+|.|...+.
T Consensus        48 ~KlLkSA~ANAe~~n~gld~d~L~I~~~~VdkGp~lKR~~PRArGRA~~i~KrtsHItIvl~e~~~~~  115 (311)
T PRK12279         48 LKLLNSAISNVQHNSKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSDDVNER  115 (311)
T ss_pred             HHHHHHHHHHHHHhhcCCChhHeEEEEEEECCCCcccCCCCccCCCCCcccCCCccEEEEEecCCchh
Confidence            999999999999  489999999999999999999999999999999999999999999999855543

>KOG3353 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.6e-37  Score=246.15  Aligned_cols=158  Identities=69%  Similarity=1.058  Sum_probs=154.1

Q ss_pred             CCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCch
Q 030676            7 EPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPV   86 (173)
Q Consensus         7 ~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~   86 (173)
                      +|+++++.++|.+.++++|+|++++.+..|+++++..|+.+|.+|+.+++|+||++|+.|+|+..++++ |||.+||||+
T Consensus         1 ~~~~~~k~~karg~~lrv~fKn~r~~~~~i~~~~~~~a~~~l~~v~~~~~c~p~~~~~~g~g~~~q~k~-~~~~~~rwpk   79 (175)
T KOG3353|consen    1 DPENPTKSCKARGSNLRVHFKNTRETAQTIKCMELLKATVYLKDVILQKICVPFRRYNGGVGRTAQAKQ-WGWTQGRWPK   79 (175)
T ss_pred             CccccchhhhcccccEEEEeccCcccchhhcCcccccceeeeccchhhcccccceecCCCcCccchhhh-hccccCcccc
Confidence            367888999999999999999999999999999999999999999999999999999999999999987 8999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCCCcchh
Q 030676           87 KSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQ  165 (173)
Q Consensus        87 Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~~~~~~  165 (173)
                      |++++++.+|+||.+||+.+|+|+|.|+|.|+.||+++.+.+.+|||+||.+++.+.+|||++||+|.++++|+++|+-
T Consensus        80 ksaefll~~LkN~esnaElkgldVDsLvIehiqvnkApKm~~rtyraHg~in~y~ssP~hie~il~~ke~~v~k~e~~~  158 (175)
T KOG3353|consen   80 KSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEV  158 (175)
T ss_pred             hHHHHHHHHHHhhhhcccccCcCcceeEeeehhhcccchhhhHHHHhhcccccccCChHHHHHHHHhhcccCCChhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999974

>KOG1711 consensus Mitochondrial/chloroplast ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.7e-25  Score=184.74  Aligned_cols=122  Identities=28%  Similarity=0.318  Sum_probs=113.3

Q ss_pred             ccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCC
Q 030676            4 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGR   83 (173)
Q Consensus         4 y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr   83 (173)
                      |++.|. . .++.|....++.|+||++.+|++|+||++++|+.||+                           |      
T Consensus        63 l~~~p~-~-~eVya~~~~Ik~S~kK~~~l~~lirgm~v~~AL~Ql~---------------------------~------  107 (218)
T KOG1711|consen   63 LPFEPK-R-PEVYACSKSIKSSPKKVWLLARLIRGMSVEEALMQLE---------------------------F------  107 (218)
T ss_pred             CCCCCc-c-hhHHHHHHHHHhCHHHHHHHHHHHcCCCHHHHHHHhh---------------------------c------
Confidence            455553 2 6888999999999999999999999999999999999                           6      


Q ss_pred             CchhhhHHHHHHHHHHHHHHHH-cCCCCCCeEE-EEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030676           84 WPVKSAKFILDLLKNAESNAEV-KGLDVDALYI-SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (173)
Q Consensus        84 ~p~Kaa~~i~k~L~sa~~NA~~-kgld~d~L~I-~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~  160 (173)
                      +++|+|..|.++|.+|.+||.+ +|+|+++||| .++++++|.++||..++||||.+++++++|||+++|.|.+.+..+
T Consensus       108 s~kK~a~~i~~~l~~A~~nA~~~~gl~~~~l~v~~~~t~~~g~~~Krl~~hargr~~ii~~~yvhi~v~L~e~s~~~~~  186 (218)
T KOG1711|consen  108 SDKKAAKTIAEVLLSARANAVHNHGLDPDSLLVVAEATVGQGNELKRLKVHARGRFGIIRRPYVHIFVKLEEGSPPQQR  186 (218)
T ss_pred             chHHHHHHHHHHHHHHHhhhHHhcCCCccceEEEEeeecccchhhhheeeeccCcccceecceeeEEEEEeecCCCchh
Confidence            8999999999999999999976 7999999999 999999999999999999999999999999999999998887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
3izr_V	171	Localization Of The Large Subunit Ribosomal Protein		5e-79
2zkr_r	184	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-59
2ww9_I	184	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		3e-50
3izs_V	170	Localization Of The Large Subunit Ribosomal Protein		5e-50
1s1i_N	183	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-49
3jyw_N	150	Structure Of The 60s Proteins For Eukaryotic Riboso		9e-49
4a17_Q	183	T.Thermophila 60s Ribosomal Subunit In Complex With		6e-45
3zf7_R	166	High-resolution Cryo-electron Microscopy Structure		3e-39
3j21_S	155	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-17
1ffk_O	154	Crystal Structure Of The Large Ribosomal Subunit Fr		7e-17
1s72_R	155	Refined Crystal Structure Of The Haloarcula Marismo		8e-17
3g4s_R	150	Co-Crystal Structure Of Tiamulin Bound To The Large		8e-17
1yj9_R	152	Crystal Structure Of The Mutant 50s Ribosomal Subun		3e-15

>pdb|3IZR|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 171

Iteration: 1
 Score =  289 bits (740), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 147/171 (85%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+E +NPTKS KA G DLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+CGGVGRTAQAK+RH NGQGRWP KSA+FILDLLKNAESNAEVKGLDVD LY+SHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKS 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LS           +Q+A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQIAARKA 171

>pdb|2ZKR|RR Chain r, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 184

Iteration: 1
 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 126/152 (82%), Gaps = 1/152 (0%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

>pdb|2WW9|I Chain I, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 184

Iteration: 1
 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF
Sbjct: 1   MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPF 60
Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQV
Sbjct: 61  RRFNSSIGRTAQGKE-FGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
           NQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct: 120 NQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151

>pdb|3IZS|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 170

Iteration: 1
 Score =  193 bits (490), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF
Sbjct: 1   MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPF 60
Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQV
Sbjct: 61  RRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
           NQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct: 120 NQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151

>pdb|1S1I|N Chain N, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 183

Iteration: 1
 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 107/150 (71%), Gaps = 1/150 (0%)
Query: 3   KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTR 62
           +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF R
Sbjct: 2   RYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRR 61
Query: 63  FCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQ 122
           F   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQ
Sbjct: 62  FNSSIGRTAQGKE-FGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQ 120
Query: 123 AQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
           A KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct: 121 APKQRRRTYRAHGRINKYESSPSHIELVVT 150

>pdb|3JYW|N Chain N, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 150

Iteration: 1
 Score =  189 bits (479), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRF 63
           Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF RF
Sbjct: 1   YGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRF 60
Query: 64  CGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
              +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA
Sbjct: 61  NSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQA 119
Query: 124 QKQRRRTYRAHGRINPYMSSPCHIELTLS 152
            KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct: 120 PKQRRRTYRAHGRINKYESSPSHIELVVT 148

>pdb|4A17|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 183

Iteration: 1
 Score =  176 bits (446), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/148 (60%), Positives = 104/148 (70%), Gaps = 5/148 (3%)
Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRF 63
           YS+EP N  K+ K   SDLRVHFKNT E   AI+ L L  AKRYL+ V+  K+ IPFTRF
Sbjct: 6   YSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRF 65
Query: 64  CGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
            G +GRTAQA   H  G  QGRWPVKS K IL LL N  +NA+ K L+   L I H QVN
Sbjct: 66  TGCIGRTAQA---HEFGRTQGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVN 122
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIEL 149
           +AQK RRRTYRAHGRINPY++S CH+E+
Sbjct: 123 RAQKGRRRTYRAHGRINPYLNSGCHVEI 150

>pdb|3ZF7|R Chain R, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 166

Iteration: 1
 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MV YS++P   +K+ KA+ +DLR H+KNT ETA+ I  + L KA++    V+A  + IPF
Sbjct: 1   MVHYSRKPQVSSKTAKAKIADLRCHYKNTFETANVINGMKLRKAQQLYRQVLAKTRCIPF 60
Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+ G +G TAQAK      +GRWP KS   +L LLKNAE+NA  KGLD   + I H+QV
Sbjct: 61  KRYNGKIGNTAQAKE-WGQTKGRWPRKSVVAMLSLLKNAEANAIEKGLDPGKMVIKHVQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 152
           +QA + RRRT+RAHGRI PYM SPCH++L ++
Sbjct: 120 DQAPRVRRRTFRAHGRITPYMRSPCHVQLFMT 151

>pdb|3J21|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRF 63
           YS +  +P +  +A   DLR+  K   E    +R + L  A RYL+DV+A K+ +P  R+
Sbjct: 7   YSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRY 66
Query: 64  CGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
               G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++ 
Sbjct: 67  NDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKG 122
Query: 124 QKQRRRTYRAHGRINPYMSSPCHIELTLS 152
              R    RA GR  P+     HIE+ + 
Sbjct: 123 PVLRGWYPRAFGRATPFNEQTTHIEVVVE 151

>pdb|1FFK|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 154

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60
Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGWDA---GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTL 151
           +  +Q+ R  RA GR + + S    +EL L
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELIL 147

>pdb|1S72|R Chain R, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 155

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 3   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 61
Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 62  QHNSGVGHKSKVDGWDA---GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 118
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTL 151
           +  +Q+ R  RA GR + + S    +EL L
Sbjct: 119 KVGEQQGRKPRAMGRASAWNSPQVDVELIL 148

>pdb|3G4S|R Chain R, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 150

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60
Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGWDA---GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTL 151
           +  +Q+ R  RA GR + + S    +EL L
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELIL 147

>pdb|1YJ9|R Chain R, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 Length = 152

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 3   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 61
Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+   
Sbjct: 62  QHNSGVGHKSKVDGWD---AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHV--- 115
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTL 151
            A K   R  RA GR + + S    +EL L
Sbjct: 116 AAHKVGERKPRAMGRASAWNSPQVDVELIL 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	8e-85
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	5e-75
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	2e-73
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	2e-72
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	4e-71
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	1e-11
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	1e-11
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	2e-11
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	1e-10
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V 3jyw_N Length = 184

 Score =  221 bits (565), Expect = 5e-75
 Identities = 102/173 (58%), Positives = 120/173 (69%), Gaps = 1/173 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF
Sbjct: 1   MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQV
Sbjct: 61  RRFNSSIGRTAQGKE-FGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           NQA KQRRRTYRAHGRIN Y SSP HIEL ++EKEE V K  E ++    S++
Sbjct: 120 NQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSRQ 172

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Length = 183

 Score =  217 bits (555), Expect = 2e-73
 Identities = 93/172 (54%), Positives = 109/172 (63%), Gaps = 1/172 (0%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
             YS+EP N  K+ K   SDLRVHFKNT E   AI+ L L  AKRYL+ V+  K+ IPFT
Sbjct: 4   TNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFT 63

Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           RF G +GRTAQA       QGRWPVKS K IL LL N  +NA+ K L+   L I H QVN
Sbjct: 64  RFTGCIGRTAQAH-EFGRTQGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVN 122

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           +AQK RRRTYRAHGRINPY++S CH+E+   E    V+KE     A    K 
Sbjct: 123 RAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRKEAPKDAAKKVPKT 174

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 184

 Score =  215 bits (548), Expect = 2e-72
 Identities = 113/173 (65%), Positives = 135/173 (78%), Gaps = 1/173 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQ-WGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K  E      K  +
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQ 172

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Length = 155

 Score =  210 bits (537), Expect = 4e-71
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 4/155 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 3   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 61

Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 62  QHNSGVGHKSKVDGWD---AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 118

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
           +  +Q+ R  RA GR + + S    +EL L E E 
Sbjct: 119 KVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEV 153

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110

 Score = 57.5 bits (140), Expect = 1e-11
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 85  PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
             + A F+  +L++A +NA        D LY+    V++         RA GR +     
Sbjct: 40  NKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLP---RARGRADIIKKR 96

Query: 144 PCHIELTLSEKEE 156
             HI + L EK  
Sbjct: 97  TSHITVILGEKHG 109

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
           P  +++ +  +L +A++NA     +  D L++    V+     +R   RA G  N     
Sbjct: 61  PRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKR 120

Query: 144 PCHIELTLSEKEE 156
             HI + ++EK  
Sbjct: 121 TSHITIIVAEKGN 133

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110

 Score = 57.1 bits (139), Expect = 2e-11
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
             K+A  +  +L++A +NAE   G D+D L ++ I V++    +R   RA GR +  +  
Sbjct: 40  NKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKR 99

Query: 144 PCHIELTLSEK 154
             HI + +S++
Sbjct: 100 TSHITVVVSDR 110

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
           P ++   I  L+ +A +NA   K  +   L IS  +VN+    ++   RA GR    +  
Sbjct: 69  PYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRP 128

Query: 144 PCHIELTLSEKEEPVKKEPETQLATSKSKK 173
            CHI + L +       +   +  T K   
Sbjct: 129 TCHITIVLRDITHFDSYDKFLESLTPKKLI 158

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110

 Score = 53.3 bits (129), Expect = 5e-10
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 85  PVKSAKFILDLLKNAESNAEV-KGLDV-DALYISHIQVNQAQKQRRRTYRAHGRINPYMS 142
             K AK I ++L  A+  A     ++    LYI+     + Q  +R  Y   GR      
Sbjct: 36  DKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEK 95

Query: 143 SPCHIELTLSEKEEP 157
             CH  + L E   P
Sbjct: 96  VYCHYFVKLVEGPPP 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 41/193 (21%)

Query: 1   MVKYS---KEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRY--LEDVMAHK 55
           + KYS   K+P   T S  +   +L+V  +N     H  R +       Y   +   +  
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-LH--RSI----VDHYNIPKTFDSDD 463

Query: 56  QAIPFTR--FCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDL------LKNAESNAEVKG 107
              P+    F   +G   +          R  +    F LD       +++  +     G
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHP----ERMTLFRMVF-LDFRFLEQKIRHDSTAWNASG 518

Query: 108 LDVDAL-----YISHIQVNQAQKQRR--------RTYRAHGRINPYMSSPCHIELTLSEK 154
             ++ L     Y  +I  N  + +R              +   + Y      + + L  +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT---DLLRIALMAE 575

Query: 155 EEPVKKEPETQLA 167
           +E + +E   Q+ 
Sbjct: 576 DEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	100.0
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	100.0
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	100.0
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	100.0
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	100.0
3j21_S	155	50S ribosomal protein L22P; archaea, archaeal, KIN	100.0
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	100.0
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	100.0
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	100.0
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	100.0
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	100.0

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q

Probab=100.00  E-value=9.5e-63  Score=398.69  Aligned_cols=166  Identities=55%  Similarity=0.842  Sum_probs=154.8

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030676            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG   80 (173)
Q Consensus         1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~   80 (173)
                      |++||++|+|++++++|.++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+|+||++|+++ |||+
T Consensus         3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~-~g~~   81 (183)
T 4a17_Q            3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHE-FGRT   81 (183)
T ss_dssp             CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGG-TTCS
T ss_pred             ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhh-cCCc
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999998 8999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030676           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (173)
Q Consensus        81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~  160 (173)
                      +||||+|+|+.|+++|+||++||+++|||+|+|||+||+||+|+.++|++|||+||+++|.+++|||||+|+|.++++|+
T Consensus        82 ~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~~v~k  161 (183)
T 4a17_Q           82 QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRK  161 (183)
T ss_dssp             BEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCCC---
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccccCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccchhhh
Q 030676          161 EPETQLA  167 (173)
Q Consensus       161 ~~~~~~~  167 (173)
                      |+|..+.
T Consensus       162 ~~~~~~~  168 (183)
T 4a17_Q          162 EAPKDAA  168 (183)
T ss_dssp             -------
T ss_pred             chhhhhh
Confidence            9887654

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=8e-62  Score=394.10  Aligned_cols=164  Identities=68%  Similarity=1.066  Sum_probs=149.0

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030676            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG   80 (173)
Q Consensus         1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~   80 (173)
                      |++||++|+|++++++|.++++++||+|+++||++||||++++|+.||++|+++|+||||+|||+|+||++++++ |||+
T Consensus         1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~-~~~~   79 (184)
T 2zkr_r            1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQ-WGWT   79 (184)
T ss_dssp             -CCCSSCCSCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTS-CSCS
T ss_pred             CCccCCCCCCCCeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccc-cccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998 8999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030676           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (173)
Q Consensus        81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~  160 (173)
                      +||||+|+|+.|+++|+||++||+++|||+|+|||.||+||+|++++|++|||+||++++++++|||+|+|+|.++.+|+
T Consensus        80 ~GR~PkKaa~~ilklLksA~aNAe~kglD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k  159 (184)
T 2zkr_r           80 QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK  159 (184)
T ss_dssp             BEECCHHHHHHHHHHHHHHHHHHHHHTSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC------
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccchh
Q 030676          161 EPETQ  165 (173)
Q Consensus       161 ~~~~~  165 (173)
                      |+|+.
T Consensus       160 ~~~~~  164 (184)
T 2zkr_r          160 PEEEV  164 (184)
T ss_dssp             -----
T ss_pred             chhhh
Confidence            88764

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N

Probab=100.00  E-value=4.8e-62  Score=395.30  Aligned_cols=164  Identities=62%  Similarity=0.921  Sum_probs=160.6

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030676            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG   80 (173)
Q Consensus         1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~   80 (173)
                      |++||++|+|++++++|.++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+|+||++++++ |||+
T Consensus         1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~-~g~~   79 (184)
T 3u5e_P            1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKE-FGVT   79 (184)
T ss_dssp             -CCCSCCCSCGGGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGG-GTCS
T ss_pred             CCccCCCCCCCCceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhc-cCCc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998 8999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030676           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (173)
Q Consensus        81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~  160 (173)
                      +||||+|+|+.|+++|+||++||+++|||+|+|||.||+||+|++++|++|||+||++++++++|||+|+|+|.++++||
T Consensus        80 ~GR~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e~~v~k  159 (184)
T 3u5e_P           80 KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAK  159 (184)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECCCCCCC
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccchh
Q 030676          161 EPETQ  165 (173)
Q Consensus       161 ~~~~~  165 (173)
                      |+|..
T Consensus       160 ~~~~~  164 (184)
T 3u5e_P          160 AAEKK  164 (184)
T ss_dssp             CCCCC
T ss_pred             cHHHH
Confidence            98754

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...

Probab=100.00  E-value=7.6e-59  Score=368.06  Aligned_cols=152  Identities=33%  Similarity=0.526  Sum_probs=146.9

Q ss_pred             ccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCC
Q 030676            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ   81 (173)
Q Consensus         2 ~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~   81 (173)
                      ++||+ |+|++++++|.++++++||+|+++||++||||++++|+.||++|+++|+||||+|||+|+||++++   |||++
T Consensus         3 ~~Ys~-~~~~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~---~~~~~   78 (155)
T 1vq8_R            3 ISYSV-EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA   78 (155)
T ss_dssp             CCCSS-CCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSSSB
T ss_pred             cccCC-CCCCCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccc---ccccc
Confidence            68999 889999999999999999999999999999999999999999999999999999999999999998   89999


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCcc
Q 030676           82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP  157 (173)
Q Consensus        82 gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~  157 (173)
                      ||||+|+|+.|+++|+||++||+++|||+|+|||+||+||+|+++||++|||+||++++++++|||||+|+|.+++
T Consensus        79 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~~  154 (155)
T 1vq8_R           79 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVE  154 (155)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC---
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997653

>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=9.8e-59  Score=367.42  Aligned_cols=150  Identities=36%  Similarity=0.528  Sum_probs=147.2

Q ss_pred             ccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCC
Q 030676            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ   81 (173)
Q Consensus         2 ~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~   81 (173)
                      |+||++|+|++++++|.++++++||||+++||++||||++++|+.+|++|+++|+||||++||+|+||+++    |||++
T Consensus         5 ~~Ys~~~~~~~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~----~~~~~   80 (155)
T 3j21_S            5 FGYSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPG----KGFGP   80 (155)
T ss_dssp             -CCCSCCCHHHHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCS----SSCSB
T ss_pred             eecccCCCCCCeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccc----cCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998    89999


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCC
Q 030676           82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE  155 (173)
Q Consensus        82 gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~  155 (173)
                      ||||+|+|+.|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||+|+|+|.+
T Consensus        81 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~  154 (155)
T 3j21_S           81 GRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR  154 (155)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...

Probab=100.00  E-value=2e-41  Score=254.64  Aligned_cols=109  Identities=27%  Similarity=0.348  Sum_probs=106.1

Q ss_pred             ceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHH
Q 030676           13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI   92 (173)
Q Consensus        13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i   92 (173)
                      ++++|.++++++||+|+++||++||||++++|+.||+                           |      ||+|+|+.|
T Consensus         1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~---------------------------f------~pkkaa~~v   47 (110)
T 3r8s_S            1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILT---------------------------Y------TNKKAAVLV   47 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCHHHHHH
T ss_pred             CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHh---------------------------h------CCHHHHHHH
Confidence            5789999999999999999999999999999999999                           5      899999999


Q ss_pred             HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeC
Q 030676           93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK  154 (173)
Q Consensus        93 ~k~L~sa~~NA~~k-gld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~  154 (173)
                      +++|+||++||+++ |+|+|+|||+|++||+|+++||++|||+||++++++++|||+|+|+|+
T Consensus        48 ~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek  110 (110)
T 3r8s_S           48 KKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR  110 (110)
T ss_dssp             HHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence            99999999999986 999999999999999999999999999999999999999999999984

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M

Probab=100.00  E-value=8.3e-40  Score=245.79  Aligned_cols=107  Identities=24%  Similarity=0.295  Sum_probs=102.7

Q ss_pred             eeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHHHHHH
Q 030676           18 RGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLK   97 (173)
Q Consensus        18 ~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~k~L~   97 (173)
                      +.+++++||+|+++||++||||++++|+.||+                           |      ||+|+|+.|+++|+
T Consensus         2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~---------------------------f------~pkkaa~~v~klL~   48 (110)
T 2ftc_M            2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLE---------------------------F------NDKKGAKIIKEVLL   48 (110)
T ss_pred             CcccceeCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHHHHHHH
Confidence            36899999999999999999999999999999                           6      89999999999999


Q ss_pred             HHHHHHHH-cCCC-CCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCcc
Q 030676           98 NAESNAEV-KGLD-VDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP  157 (173)
Q Consensus        98 sa~~NA~~-kgld-~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~  157 (173)
                      ||++||++ +|+| +|+|||+|++||+|+++||++|||+||++++++++|||+|+|+|.+++
T Consensus        49 sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR~~prA~GRa~~i~k~~~HI~vvl~e~~~p  110 (110)
T 2ftc_M           49 EAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPP  110 (110)
T ss_pred             HHHHhHHHhcCCCCccCeEEEEEEECCCCcccCCCCCCCCCCCccccCCccEEEEEEeCCCC
Confidence            99999998 7999 899999999999999999999999999999999999999999997653

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...

Probab=100.00  E-value=2e-40  Score=256.96  Aligned_cols=112  Identities=22%  Similarity=0.278  Sum_probs=108.0

Q ss_pred             CceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHH
Q 030676           12 TKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKF   91 (173)
Q Consensus        12 ~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~   91 (173)
                      +++++|.++++++||+|+++||++||||++++|+.||+                           |      ||+|+|..
T Consensus        21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~---------------------------f------~pkKaA~~   67 (134)
T 2zjr_P           21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR---------------------------F------IPRSASEP   67 (134)
T ss_dssp             CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHH---------------------------H------CCCTTHHH
T ss_pred             ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CcHhHHHH
Confidence            46899999999999999999999999999999999999                           5      89999999


Q ss_pred             HHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCc
Q 030676           92 ILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE  156 (173)
Q Consensus        92 i~k~L~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~  156 (173)
                      |+++|+||++||++ +|+|+|+|||+||+||+|+++||++|||+||++++++++|||+|+|+|.++
T Consensus        68 v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~Gp~lKR~~pRA~GRa~~i~k~tsHItvvl~E~~~  133 (134)
T 2zjr_P           68 VAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN  133 (134)
T ss_dssp             HHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred             HHHHHHHHHHhHHHhcCCChhheEEEEEEECCCccccCCCCCCCCCCcccccCCceEEEEEEecCC
Confidence            99999999999995 899999999999999999999999999999999999999999999999753

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...

Probab=100.00  E-value=8.2e-40  Score=245.82  Aligned_cols=108  Identities=26%  Similarity=0.299  Sum_probs=104.1

Q ss_pred             ceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHH
Q 030676           13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI   92 (173)
Q Consensus        13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i   92 (173)
                      ++++|.++++++||+|+++||++||||++++|+.||+                           |      ||+|+|+.|
T Consensus         1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~---------------------------~------~pkkaa~~v   47 (110)
T 1i4j_A            1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILR---------------------------Y------TNKRGAYFV   47 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCTTHHHH
T ss_pred             CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHH
Confidence            3689999999999999999999999999999999999                           5      899999999


Q ss_pred             HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCc
Q 030676           93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE  156 (173)
Q Consensus        93 ~k~L~sa~~NA~~k-gld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~  156 (173)
                      +++|+||++||+++ |+|+|+|||+|++||+|++   ++|||+||++++++++|||+|+|+|.++
T Consensus        48 ~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~---~~pRA~GRa~~i~k~~~HItvvl~e~~~  109 (110)
T 1i4j_A           48 AKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA---VLPRARGRADIIKKRTSHITVILGEKHG  109 (110)
T ss_dssp             HHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE---ECSCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred             HHHHHHHHHhHHHhcCCChhheEEEEEEECCCCe---EeecCCCCCcccccCCeeEEEEEEecCC
Confidence            99999999999987 9999999999999999998   9999999999999999999999999754

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=1.5e-40  Score=271.45  Aligned_cols=123  Identities=22%  Similarity=0.300  Sum_probs=109.8

Q ss_pred             cccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCC
Q 030676            3 KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQG   82 (173)
Q Consensus         3 ~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~g   82 (173)
                      +||.+|.|++++++|.++++++||+|+++||++||||++++|+.||+                           |     
T Consensus        20 ~~~~~~~n~~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~---------------------------f-----   67 (199)
T 3bbo_U           20 GLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILE---------------------------L-----   67 (199)
T ss_dssp             ----------CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGG---------------------------G-----
T ss_pred             cCCCCCCCCCeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHH---------------------------H-----
Confidence            57778899999999999999999999999999999999999999999                           5     


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccC
Q 030676           83 RWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPV  158 (173)
Q Consensus        83 r~p~Kaa~~i~k~L~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~  158 (173)
                       +|+|+|..|+++|+||++||++ +|+|+|+|||+||+||+|+++||++|||+||++++++++|||+|+|+|.+++.
T Consensus        68 -~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~~  143 (199)
T 3bbo_U           68 -MPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHFD  143 (199)
T ss_dssp             -CCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCCCCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCC
T ss_pred             -CCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeCCchH
Confidence             8999999999999999999998 69999999999999999999999999999999999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1vqor1	150	d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon	7e-52
d2gycq1	106	d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric	2e-15
d2zjrp1	127	d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ	1e-14
d1i4ja_	110	d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat	3e-11

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  160 bits (407), Expect = 7e-52
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60

Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGW---DAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
           +  +Q+ R  RA GR + + S    +EL L E
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELILEE 149

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

 Score = 66.0 bits (161), Expect = 2e-15
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 34/139 (24%)

Query: 17  ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNR 76
           A+    R   +  R  A  IR   +++A   L                            
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILT--------------------------- 33

Query: 77  HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHG 135
                     K+A  +  +L++A +NAE   G D+D L ++ I V++    +R   RA G
Sbjct: 34  ------YTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKG 87

Query: 136 RINPYMSSPCHIELTLSEK 154
           R +  +    HI + +S++
Sbjct: 88  RADRILKRTSHITVVVSDR 106

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 64.4 bits (157), Expect = 1e-14
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 34/155 (21%)

Query: 3   KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTR 62
           K  K+     K   A    +R+  +  R     IR   +  A+  L              
Sbjct: 5   KQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR------------- 51

Query: 63  FCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVN 121
                                 P  +++ +  +L +A++NA     +  D L++    V+
Sbjct: 52  --------------------FIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVD 91

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
                +R   RA G  N       HI + ++EK  
Sbjct: 92  AGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN 126

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

 Score = 55.2 bits (133), Expect = 3e-11
 Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 37/142 (26%)

Query: 16  KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKN 75
           KA    +R+  +  R     IR   L +A+  L                           
Sbjct: 4   KAIARYVRISPRKVRLVVDLIRGKSLEEARNILR-------------------------- 37

Query: 76  RHPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAH 134
                      + A F+  +L++A +NA        D LY+    V++      R   A 
Sbjct: 38  -------YTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLPR---AR 87

Query: 135 GRINPYMSSPCHIELTLSEKEE 156
           GR +       HI + L EK  
Sbjct: 88  GRADIIKKRTSHITVILGEKHG 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1vqor1	150	Ribosomal protein L22 {Archaeon Haloarcula marismo	100.0
d2zjrp1	127	Ribosomal protein L22 {Deinococcus radiodurans [Ta	100.0
d1i4ja_	110	Ribosomal protein L22 {Thermus aquaticus, subsp. T	100.0
d2gycq1	106	Ribosomal protein L22 {Escherichia coli [TaxId: 56	100.0
d1r9pa_	134	NifU-like protein HI0377 {Haemophilus influenzae [	85.84

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=6.3e-51  Score=319.13  Aligned_cols=148  Identities=34%  Similarity=0.549  Sum_probs=144.3

Q ss_pred             ccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCC
Q 030676            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ   81 (173)
Q Consensus         2 ~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~   81 (173)
                      |+||++. |++++++|.++++++||||+++||++||||++++|+.||++|+.+|++|||++|+++++|+++.   +||+.
T Consensus         2 ~~y~~~~-~~~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~---~~~~~   77 (150)
T d1vqor1           2 ISYSVEA-DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA   77 (150)
T ss_dssp             CCCSSCC-CTTTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSCSB
T ss_pred             CcccccC-CCCceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhh---cCCCc
Confidence            6899985 8999999999999999999999999999999999999999999999999999999999999875   68999


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeee
Q 030676           82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE  153 (173)
Q Consensus        82 gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E  153 (173)
                      |+||+|+|+.|+++|+||.+||+++|+|+|+|||.+||||+|+++||++|||+||++++++++|||+|+|+|
T Consensus        78 g~~p~kaa~~i~kll~sa~aNA~~~~~d~~~L~I~~~~v~kG~~~KR~~prArGRa~~i~k~~~hi~vvL~E  149 (150)
T d1vqor1          78 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEE  149 (150)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEEC
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCccccCcCcccCCCCCCccCCCceEEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.1e-37  Score=236.24  Aligned_cols=114  Identities=22%  Similarity=0.268  Sum_probs=108.3

Q ss_pred             CCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhh
Q 030676           10 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSA   89 (173)
Q Consensus        10 ~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa   89 (173)
                      +..+++.|..+++++||+|+++||++||||+++||+.||+                           |      +|+|+|
T Consensus        12 ~~~~~~~A~~k~ir~Sp~K~r~v~~~IrG~~v~eAl~~L~---------------------------f------~~kkaa   58 (127)
T d2zjrp1          12 KLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR---------------------------F------IPRSAS   58 (127)
T ss_dssp             CCCCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHH---------------------------H------CCCTTH
T ss_pred             hccchhhhhhcccccCHHHHHHHHHHHcCCcHHHHHHHHh---------------------------c------CCchhh
Confidence            3456778999999999999999999999999999999999                           5      899999


Q ss_pred             HHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCc
Q 030676           90 KFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE  156 (173)
Q Consensus        90 ~~i~k~L~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~  156 (173)
                      ..|.++|+||.+||++ +|+|+|+|||.+|+||+|+++||++|||+||++++++++|||+|+|+|.+.
T Consensus        59 ~~v~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G~~~KR~~prArGRa~~i~k~~sHi~VvL~e~~~  126 (127)
T d2zjrp1          59 EPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN  126 (127)
T ss_dssp             HHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred             hhHHHHHHHHHHHHHhcccCcccceEEEEEEECCCCcccCCCCCcCCCCCcccCCcccEEEEEEecCC
Confidence            9999999999999997 699999999999999999999999999999999999999999999999764

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

Probab=100.00  E-value=6.1e-37  Score=228.53  Aligned_cols=108  Identities=26%  Similarity=0.298  Sum_probs=103.2

Q ss_pred             ceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHH
Q 030676           13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI   92 (173)
Q Consensus        13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i   92 (173)
                      |+++|..+++++||+|+++||++||||++++|+.||+                           |      +|+|+|+.|
T Consensus         1 Me~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al~~L~---------------------------f------~~~kaa~~i   47 (110)
T d1i4ja_           1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILR---------------------------Y------TNKRGAYFV   47 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCTTHHHH
T ss_pred             CcEEEEcCccccCHHHHHHHHHHHcCCcHHHHHHHHh---------------------------c------CcchhHHHH
Confidence            5799999999999999999999999999999999999                           5      899999999


Q ss_pred             HHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCc
Q 030676           93 LDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE  156 (173)
Q Consensus        93 ~k~L~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~  156 (173)
                      +|+|+||.+||++ +|+|+|+|||++++||+|++++   |||+||++++++++|||+|+|+|.+.
T Consensus        48 ~k~l~SA~aNA~~~~~~d~~~L~I~~~~v~~G~~~k---~rarGRa~~i~k~~sHi~vvL~e~~~  109 (110)
T d1i4ja_          48 AKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVL---PRARGRADIIKKRTSHITVILGEKHG  109 (110)
T ss_dssp             HHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEEEC---SCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred             HHHHHHHHHHHHhccCCCccceEEEEEEECCCceEC---hhhccCCCcccCCcccEEEEEeecCC
Confidence            9999999999986 7999999999999999999875   89999999999999999999999764

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.6e-38  Score=231.78  Aligned_cols=105  Identities=28%  Similarity=0.372  Sum_probs=101.5

Q ss_pred             EeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHHHHH
Q 030676           17 ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLL   96 (173)
Q Consensus        17 A~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~k~L   96 (173)
                      |..+++++||+|+++||++||||+++||+.||+                           |      +|+|+|..|.|+|
T Consensus         1 A~~k~ir~Sp~K~r~va~~IrG~~v~~A~~~L~---------------------------f------~~kkaa~~i~k~l   47 (106)
T d2gycq1           1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILT---------------------------Y------TNKKAAVLVKKVL   47 (106)
T ss_dssp             CCCCCCCCCSSSSCSSSSSSSSSCSHHHHSSSS---------------------------S------CCSSTTSSTTTSS
T ss_pred             CCcCccccCHHHHHHHHHHHcCCcHHHHHHHHc---------------------------c------CCcccchHHHHHH
Confidence            567899999999999999999999999999999                           7      8999999999999


Q ss_pred             HHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeC
Q 030676           97 KNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK  154 (173)
Q Consensus        97 ~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~  154 (173)
                      +||.+||++ +|+|+|+|||.+++||+|+++||++||||||++++++++|||+|+|+|+
T Consensus        48 ~sA~aNA~~~~~~d~~~L~I~~~~v~~G~~~KR~~~rarGRa~~i~k~~sHi~vvL~Ek  106 (106)
T d2gycq1          48 ESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR  106 (106)
T ss_dssp             SSSSTTTSTTTTCCTTTEEECCCCCCCCCBCCCBCCCTTTCCCBCCCBCCCCCCCEEEC
T ss_pred             HHHHHHHHHhcCCCHHHhEEEEEEECCCCcccCcCCcccCCCCcccCCCccEEEEEecC
Confidence            999999985 7899999999999999999999999999999999999999999999984

>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU-like protein HI0377
species: Haemophilus influenzae [TaxId: 727]

Probab=85.84  E-value=1.1  Score=31.72  Aligned_cols=76  Identities=13%  Similarity=0.096  Sum_probs=57.6

Q ss_pred             eEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHH
Q 030676           14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFIL   93 (173)
Q Consensus        14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~   93 (173)
                      .++..+..-.+|.-=+..++.+|+|++++||..+-...+...                     .+.+.  .-.++|..-.
T Consensus        55 di~f~~~GCais~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~---------------------l~~~p--~r~~Ca~L~~  111 (134)
T d1r9pa_          55 DAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEE---------------------LELPP--VKVHCSILAE  111 (134)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHH---------------------HTCCS--TTHHHHHHHH
T ss_pred             EEEEEeccCcccHhHHHHHHHHHHhCCHHHHHHhcchHHHHh---------------------hcCCC--chhHHHHHHH
Confidence            577788888899999999999999999999988755433321                     11111  2468899999


Q ss_pred             HHHHHHHHHHHH-cCCCCCC
Q 030676           94 DLLKNAESNAEV-KGLDVDA  112 (173)
Q Consensus        94 k~L~sa~~NA~~-kgld~d~  112 (173)
                      +.|+.|+++.+. +|++..+
T Consensus       112 ~al~~al~~y~~k~g~~~~~  131 (134)
T d1r9pa_         112 DAIKAAIADYKAKQGLEHHH  131 (134)
T ss_dssp             HHHHHHHHHHHHTTTCCCSC
T ss_pred             HHHHHHHHHHHHhcCCchhh
Confidence            999999999986 5776543