Citrus Sinensis ID: 030721

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
ccccccccEEEEcccccccccccEEEEEccccccccEEEEccccccccccccEEccccEEEEEEccccccccccccccccccccEEEEEcccccccccccEEEEEEcccEEEEEccEEEEEEcccccEEEEccccccccccccEEEEEEccccccccEEEEEcccccccccc
cccccccEEcccccccccccccEEEEEEcccccccccEEEEEcccccccccEEEEcccEEEEEEcccccEEccccccccccccEEEEEEccccccccccEEEEEEEccccEEEEccEEEEEEEEccEEEEEccccccccccccEEEEEccccccccEEEEEccccccccccc
mhektkfrlhshevpygsgsgqqsvtgfpdvddansywivkpilgasakqgdtiksgtIIRLQHMRTRKWLhshlhaspisgnleiscfggeeesdtgdYWRVMIEGSGKTWRQDQRIRLqhvdtggylhshpkkyqriaggqqevcgvrekradnvwlaaegvylpvtesk
mhektkfrlhshevpygsgsgqqsVTGFPDVDDANSYWIVKPIlgasakqgdtikSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGsgktwrqdQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRAdnvwlaaegvylpvtesk
MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
***************************FPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPV****
MHEKTKFRLHSHE************TGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAE**********
********LHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
*****KFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLP*****
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MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query172 2.2.26 [Sep-21-2011]
Q93ZE8218 Stromal cell-derived fact yes no 0.947 0.747 0.807 2e-83
Q54P23212 Stromal cell-derived fact yes no 0.953 0.773 0.473 5e-32
Q9DCT5211 Stromal cell-derived fact yes no 0.976 0.796 0.429 7e-32
Q99470211 Stromal cell-derived fact yes no 0.976 0.796 0.429 1e-31
Q3SZ45211 Stromal cell-derived fact yes no 0.976 0.796 0.423 2e-31
Q9ESP1221 Stromal cell-derived fact no no 0.924 0.719 0.428 9e-30
Q3T083221 Stromal cell-derived fact no no 0.924 0.719 0.416 6e-29
Q9HCN8221 Stromal cell-derived fact no no 0.924 0.719 0.416 8e-29
P52867 743 Dolichyl-phosphate-mannos yes no 0.837 0.193 0.365 2e-16
O74189 877 Dolichyl-phosphate-mannos N/A no 0.947 0.185 0.35 2e-13
>sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=1 SV=1 Back     alignment and function desciption
 Score =  307 bits (787), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 138/171 (80%), Positives = 157/171 (91%)

Query: 1   MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTII 60
           MHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G + KQGD +KSG  I
Sbjct: 46  MHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATI 105

Query: 61  RLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRL 120
           RLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD+W+++IEGSGKTW+QDQR+RL
Sbjct: 106 RLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRL 165

Query: 121 QHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTES 171
           QH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES
Sbjct: 166 QHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216

Arabidopsis thaliana (taxid: 3702)
>sp|Q54P23|SDF2_DICDI Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1 Back     alignment and function description
>sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1 Back     alignment and function description
>sp|Q99470|SDF2_HUMAN Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2 Back     alignment and function description
>sp|Q3SZ45|SDF2_BOVIN Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2 Back     alignment and function description
>sp|Q3T083|SDF2L_BOVIN Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HCN8|SDF2L_HUMAN Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2 Back     alignment and function description
>sp|P52867|PMT5_YEAST Dolichyl-phosphate-mannose--protein mannosyltransferase 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PMT5 PE=1 SV=1 Back     alignment and function description
>sp|O74189|PMT1_CANAL Dolichyl-phosphate-mannose--protein mannosyltransferase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PMT1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
357466039223 Stromal cell-derived factor 2-like prote 1.0 0.771 0.906 2e-89
255648004222 unknown [Glycine max] 1.0 0.774 0.901 6e-89
255548764219 Stromal cell-derived factor 2 precursor, 1.0 0.785 0.901 9e-89
388523123226 unknown [Lotus japonicus] 1.0 0.761 0.901 2e-88
363807190172 uncharacterized protein LOC100811638 [Gl 1.0 1.0 0.901 2e-88
359806084216 uncharacterized protein LOC100792538 pre 1.0 0.796 0.895 2e-88
118482861216 unknown [Populus trichocarpa] 1.0 0.796 0.877 1e-87
388495320223 unknown [Medicago truncatula] 1.0 0.771 0.889 1e-87
224143291220 predicted protein [Populus trichocarpa] 1.0 0.781 0.877 1e-87
224092582216 predicted protein [Populus trichocarpa] 1.0 0.796 0.872 3e-87
>gi|357466039|ref|XP_003603304.1| Stromal cell-derived factor 2-like protein [Medicago truncatula] gi|355492352|gb|AES73555.1| Stromal cell-derived factor 2-like protein [Medicago truncatula] gi|388522119|gb|AFK49121.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  332 bits (852), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/172 (90%), Positives = 163/172 (94%)

Query: 1   MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTII 60
           MHEKTKFRLHSH+VPYGSGSGQQSVTGFP VDDANSYWIV+P  G SAKQGDTIKSGTII
Sbjct: 49  MHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDANSYWIVRPEPGTSAKQGDTIKSGTII 108

Query: 61  RLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRL 120
           RLQHMRTRKWLHSHLHASPISGNLE+SCFGGE ESDTGDYWR++IEGSGKTW+QDQR RL
Sbjct: 109 RLQHMRTRKWLHSHLHASPISGNLEVSCFGGENESDTGDYWRLLIEGSGKTWKQDQRFRL 168

Query: 121 QHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK 172
           QH+DT GYLHSH KKY RIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
Sbjct: 169 QHIDTSGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255648004|gb|ACU24458.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255548764|ref|XP_002515438.1| Stromal cell-derived factor 2 precursor, putative [Ricinus communis] gi|223545382|gb|EEF46887.1| Stromal cell-derived factor 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388523123|gb|AFK49623.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|363807190|ref|NP_001242350.1| uncharacterized protein LOC100811638 [Glycine max] gi|255641021|gb|ACU20790.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359806084|ref|NP_001241440.1| uncharacterized protein LOC100792538 precursor [Glycine max] gi|255644896|gb|ACU22948.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|118482861|gb|ABK93345.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388495320|gb|AFK35726.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224143291|ref|XP_002324906.1| predicted protein [Populus trichocarpa] gi|118488737|gb|ABK96179.1| unknown [Populus trichocarpa] gi|222866340|gb|EEF03471.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224092582|ref|XP_002309671.1| predicted protein [Populus trichocarpa] gi|222855647|gb|EEE93194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
UNIPROTKB|B9RNW9219 RCOM_0921720 "Stromal cell-der 1.0 0.785 0.901 8.9e-86
TAIR|locus:2040199218 SDF2 "AT2G25110" [Arabidopsis 0.994 0.784 0.807 2.6e-79
DICTYBASE|DDB_G0284847212 DDB_G0284847 "MIR domain-conta 0.947 0.768 0.505 9.9e-39
FB|FBgn0037312216 CG11999 [Drosophila melanogast 0.918 0.731 0.443 1.7e-36
WB|WBGene00020038206 R12E2.13 [Caenorhabditis elega 0.912 0.762 0.456 7.4e-34
MGI|MGI:108019211 Sdf2 "stromal cell derived fac 0.976 0.796 0.429 1.8e-32
RGD|1307274211 Sdf2 "stromal cell derived fac 0.936 0.763 0.447 2.3e-32
UNIPROTKB|Q99470211 SDF2 "Stromal cell-derived fac 0.976 0.796 0.429 2.9e-32
UNIPROTKB|Q5ZIB0211 SDF2L1 "Uncharacterized protei 0.976 0.796 0.426 3.7e-32
UNIPROTKB|Q3SZ45211 SDF2 "Stromal cell-derived fac 0.976 0.796 0.423 4.7e-32
UNIPROTKB|B9RNW9 RCOM_0921720 "Stromal cell-derived factor 2, putative" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 155/172 (90%), Positives = 164/172 (95%)

Query:     1 MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTII 60
             MHE+TKFRLHSH+VPYGSGSGQQSVTGFP+VDD+NSYWIV+P     AKQGD IKSGTII
Sbjct:    48 MHERTKFRLHSHDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPQPDTGAKQGDAIKSGTII 107

Query:    61 RLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRL 120
             RLQHMRTRKWLHSHLHASPISGNLE+SCFGGE +SDTGDYWR+MIEGSGKTW+QDQRIRL
Sbjct:   108 RLQHMRTRKWLHSHLHASPISGNLEVSCFGGESDSDTGDYWRLMIEGSGKTWKQDQRIRL 167

Query:   121 QHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK 172
             QHVDTGGYLHSH KKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
Sbjct:   168 QHVDTGGYLHSHDKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK 219
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2040199 SDF2 "AT2G25110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284847 DDB_G0284847 "MIR domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0037312 CG11999 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00020038 R12E2.13 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:108019 Sdf2 "stromal cell derived factor 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307274 Sdf2 "stromal cell derived factor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99470 SDF2 "Stromal cell-derived factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIB0 SDF2L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZ45 SDF2 "Stromal cell-derived factor 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93ZE8SDF2_ARATHNo assigned EC number0.80700.94760.7477yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XVIII0163
SubName- Full=Putative uncharacterized protein; (221 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
COG1928 699 COG1928, PMT1, Dolichyl-phosphate-mannose--protein 3e-29
pfam02815189 pfam02815, MIR, MIR domain 3e-16
smart0047257 smart00472, MIR, Domain in ryanodine and inositol 3e-11
smart0047257 smart00472, MIR, Domain in ryanodine and inositol 1e-06
COG1928 699 COG1928, PMT1, Dolichyl-phosphate-mannose--protein 9e-05
pfam02815189 pfam02815, MIR, MIR domain 1e-04
smart0047257 smart00472, MIR, Domain in ryanodine and inositol 3e-04
COG1928 699 COG1928, PMT1, Dolichyl-phosphate-mannose--protein 8e-04
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  112 bits (281), Expect = 3e-29
 Identities = 61/175 (34%), Positives = 82/175 (46%), Gaps = 15/175 (8%)

Query: 9   LHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTR 68
           LHSH   Y  GS QQ VTG+    DAN+ W+++     +A Q + +K G  +RL+H  T 
Sbjct: 320 LHSHNQLYPEGSEQQQVTGYGH-KDANNEWLIEL-SDENATQIEPLKDGQSVRLRHKYTG 377

Query: 69  KWLHSHLHASPISGN-LEISCFGGEEESDTGDYWRVMI--------EGSGKTWRQDQRIR 119
           K LH H    P+SGN  E+S +G   E D  D W + I        +        + + R
Sbjct: 378 KNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPL--ETKFR 435

Query: 120 LQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGV--YLPVTESK 172
           L HV TG YL SH  K       Q+EV   +++     W   E V   LP  E K
Sbjct: 436 LYHVLTGCYLASHDLKLPEWGFSQREVLCAKDRDPSTTWNIEENVNDRLPNPEKK 490

Length = 699
>gnl|CDD|217239 pfam02815, MIR, MIR domain Back     alignment and domain information
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|217239 pfam02815, MIR, MIR domain Back     alignment and domain information
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 172
KOG3358211 consensus Uncharacterized secreted protein SDF2 (S 100.0
KOG3359 723 consensus Dolichyl-phosphate-mannose:protein O-man 100.0
COG1928 699 PMT1 Dolichyl-phosphate-mannose--protein O-mannosy 100.0
PF02815190 MIR: MIR domain; InterPro: IPR003608 The MIR domai 100.0
KOG3359 723 consensus Dolichyl-phosphate-mannose:protein O-man 99.94
COG1928 699 PMT1 Dolichyl-phosphate-mannose--protein O-mannosy 99.89
KOG3358211 consensus Uncharacterized secreted protein SDF2 (S 99.83
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 99.62
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 99.6
PF02815190 MIR: MIR domain; InterPro: IPR003608 The MIR domai 99.56
PF08709214 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanod 98.72
PF08709214 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanod 98.2
KOG3533 2706 consensus Inositol 1,4,5-trisphosphate receptor [S 97.91
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 97.58
KOG3533 2706 consensus Inositol 1,4,5-trisphosphate receptor [S 97.33
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 97.3
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 97.0
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 95.82
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 93.08
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 90.29
cd00257119 Fascin Fascin-like domain; members include actin-b 86.07
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 84.15
cd00058123 FGF Acidic and basic fibroblast growth factor fami 80.26
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-48  Score=292.58  Aligned_cols=166  Identities=55%  Similarity=0.971  Sum_probs=159.8

Q ss_pred             ccCCCeeEEEeecccCCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCC
Q 030721            2 HEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPIS   81 (172)
Q Consensus         2 h~~t~~~LHSh~~~y~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S   81 (172)
                      |..+++.||||+.+|++||+||+||++....|.|++|+|++..+..++.+++|+||++|||.|+.||++||||-+.+|+|
T Consensus        36 n~~~~~RLHSHDVkYGSgSGQQSVTgv~~~dD~NSyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~TgknLHSHhf~sPlS  115 (211)
T KOG3358|consen   36 NTKHKFRLHSHDVKYGSGSGQQSVTGVEGVDDSNSYWRIKPVSGTTCERGDPIKCGQTIRLTHLKTGKNLHSHHFTSPLS  115 (211)
T ss_pred             ccccceeeeccccCccCCCCcceeecccccccCcceEEEecCCCCcccCCCccccCCeEEEEEeecccchhhcccCCCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcCCCCCCcEEEE
Q 030721           82 GNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAA  161 (172)
Q Consensus        82 ~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~~~~~~~W~ve  161 (172)
                      ++||||||+.++++|..|.|.|.|.  |+.|.....|||+|+.|+.||..++.+|..|+.+|+||.++..+..++.|++.
T Consensus       116 gnqEVSafG~dgegDtgD~Wtvic~--g~~W~r~~~vrl~Hi~T~~yLs~sg~qygrpi~GQ~EV~G~~~~~~~n~Wkaa  193 (211)
T KOG3358|consen  116 GNQEVSAFGEDGEGDTGDHWTVICN--GKTWKRDARVRLQHIDTSVYLSVSGEQYGRPISGQQEVVGMRSPKAGNIWKAA  193 (211)
T ss_pred             CCeeEEeecccCCCCcccceEEEeC--CccccccceEEEEEeccceeEEecccccCCccCCceEEecccCCCCCCceeec
Confidence            9999999999899999999998886  58899999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCCC
Q 030721          162 EGVYLPVT  169 (172)
Q Consensus       162 ~~~~~~~~  169 (172)
                      +|+|+++.
T Consensus       194 EGifikp~  201 (211)
T KOG3358|consen  194 EGIFIKPS  201 (211)
T ss_pred             cceEecCc
Confidence            99999987

>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2 Back     alignment and domain information
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only] Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2 Back     alignment and domain information
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor Back     alignment and domain information
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor Back     alignment and domain information
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms] Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
3mal_A199 Crystal Structure Of The Sdf2-Like Protein From Ara 2e-84
1t9f_A187 Structural Genomics Of Caenorhabditis Elegans: Stru 5e-34
>pdb|3MAL|A Chain A, Crystal Structure Of The Sdf2-Like Protein From Arabidopsis Length = 199 Back     alignment and structure 
Iteration: 1

 Score =  307 bits (786), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 138/171 (80%), Positives = 157/171 (91%)
Query: 1   MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTII 60
           MHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G + KQGD +KSG  I
Sbjct: 27  MHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATI 86
Query: 61  RLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRL 120
           RLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD+W+++IEGSGKTW+QDQR+RL
Sbjct: 87  RLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRL 146
Query: 121 QHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTES 171
           QH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES
Sbjct: 147 QHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 197
>pdb|1T9F|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Structure Of A Protein With Unknown Function Length = 187 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 3e-68
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 9e-14
3mal_A 199 Stromal cell-derived factor 2-like protein; trefoi 4e-06
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 4e-59
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 5e-13
1t9f_A 187 Protein 1D10; structural genomics, PSI, protein st 9e-06
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 4e-17
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 7e-07
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 9e-06
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 5e-04
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 2e-11
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 2e-05
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 2e-05
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} Length = 199 Back     alignment and structure
 Score =  205 bits (522), Expect = 3e-68
 Identities = 138/172 (80%), Positives = 157/172 (91%)

Query: 1   MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTII 60
           MHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G + KQGD +KSG  I
Sbjct: 27  MHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATI 86

Query: 61  RLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRL 120
           RLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD+W+++IEGSGKTW+QDQR+RL
Sbjct: 87  RLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRL 146

Query: 121 QHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK 172
           QH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES 
Sbjct: 147 QHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNESS 198
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} Length = 199 Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} Length = 199 Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Length = 187 Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Length = 187 Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Length = 187 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Length = 559 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Length = 559 Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Length = 381 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 100.0
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 100.0
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 99.97
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 99.96
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 99.95
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 99.93
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 99.83
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 99.83
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 99.64
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 99.33
3im6_A217 Cardiac Ca2+ release channel; ryanodine receptor 2 98.79
1xzz_A246 Inositol 1,4,5-trisphosphate receptor type 1; IP3 98.74
1xzz_A246 Inositol 1,4,5-trisphosphate receptor type 1; IP3 97.98
3im6_A217 Cardiac Ca2+ release channel; ryanodine receptor 2 97.67
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 89.97
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 87.62
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 86.64
1bfg_A146 Basic fibroblast growth factor; 1.60A {Homo sapien 86.47
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 86.15
1qql_A140 Fibroblast growth factor 7/1 chimera; beta-trefoil 84.04
1q1u_A144 FGF-12, fibrobast growth factor homologous factor 83.91
1rg8_A146 Heparin-binding growth factor 1; beta-trefoil, hor 83.78
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
Probab=100.00  E-value=6e-57  Score=353.99  Aligned_cols=171  Identities=81%  Similarity=1.382  Sum_probs=159.9

Q ss_pred             CccCCCeeEEEeecccCCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCC
Q 030721            1 MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPI   80 (172)
Q Consensus         1 ~h~~t~~~LHSh~~~y~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~   80 (172)
                      ||..|+.|||||...||.||+|||||||.+..|.||+|+|++........+++|++||+|||+|+.|++|||||++++|+
T Consensus        27 ~h~~t~~~LHSH~~~yp~gS~qQqVT~y~~~~D~Nn~W~I~~~~~~~~~~~~~v~~gd~IRL~H~~T~~~LhSH~~~~P~  106 (199)
T 3mal_A           27 MHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPI  106 (199)
T ss_dssp             EETTTCCEEEEEEEECSSTTCCEEEEEECCSCCGGGCEEEECCTTSSCCTTSBCBTTCEEEEEETTTCCEEEEEEEECTT
T ss_pred             EECCCCCcceeCCccCCCCCCCEEEEeeCCCCCCCCEEEEEecCcCCcCCCcEeecCCEEEEEECCCCCCEeECCcCCCC
Confidence            58999999999999999999999999999866889999999887666667899999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcCCCCCCcEEE
Q 030721           81 SGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLA  160 (172)
Q Consensus        81 S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~~~~~~~W~v  160 (172)
                      |++||||||++.+.+|.+|.|+||+.+.++.++.++.|||+|+.|||||++|+.+||+|+++|+||+|.+.++.+++|+|
T Consensus       107 s~~~EVs~~~~~~~~D~~d~W~Vei~~~~~~~~~~~~fRL~H~~T~~yL~sh~~~lp~wg~~Q~EV~~~~~~~~~~~W~v  186 (199)
T 3mal_A          107 SGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLA  186 (199)
T ss_dssp             TCSEEEEEECBTTBCCGGGCEEEEESSSCCBCBTTCEEEEEETTTCCEEEEEEEECCSSSTTCEEEEEESSCCGGGCEEE
T ss_pred             CCCeEEEEeccCCCCCCCCeEEEEEcCCCCEEEcCCeEEEEECCCCeEEeeCCCCCCCCCCcceEEEeeCCCCCCCeEEe
Confidence            99999999997667899999999998878889999999999999999999999999999999999999987788999999


Q ss_pred             EEeeeCCCCCC
Q 030721          161 AEGVYLPVTES  171 (172)
Q Consensus       161 e~~~~~~~~~~  171 (172)
                      |+++|++++++
T Consensus       187 ee~~~~~~~~~  197 (199)
T 3mal_A          187 AEGVYLPLNES  197 (199)
T ss_dssp             EEEECCCCCC-
T ss_pred             CccccCCcccc
Confidence            99999998875
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Back     alignment and structure
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A Back     alignment and structure
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3 receptor suppressor domain, calcium channe trefoil fold, membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A Back     alignment and structure
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3 receptor suppressor domain, calcium channe trefoil fold, membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A Back     alignment and structure
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A Back     alignment and structure
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 172
d1t9fa_178 b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) 2e-57
d1t9fa_178 b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) 3e-10
d1t9fa_ 178 b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) 6e-07
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Length = 178 Back     information, alignment and structure

class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: Hypothetical protein R12E2.13 (1D10)
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  175 bits (445), Expect = 2e-57
 Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 1   MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTII 60
           ++     RLHSH+V YGSGSGQQSVT   + DD NS+W + P L A   +GD IK G  I
Sbjct: 16  INANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCGDKI 75

Query: 61  RLQHMRTRKWLHSHLHASPIS-GNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIR 119
           RL+H+ T  +LHSH   +P+S  + E+S FG E ESDTGD W V+   +G  W + ++ +
Sbjct: 76  RLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVIC--NGDEWLESEQFK 133

Query: 120 LQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGV 164
           L+H  TG YL    +++ R   GQ+EV G       + W  AEG+
Sbjct: 134 LRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGSAWKVAEGI 178
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Length = 178 Back     information, alignment and structure
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Length = 178 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 100.0
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 99.95
d1n4ka2200 IP3 receptor type 1 binding core, domain 1 {Mouse 98.7
d1n4ka2200 IP3 receptor type 1 binding core, domain 1 {Mouse 98.47
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 94.97
d1nuna_139 Fibroblast growth factor-10, FGF10 {Human (Homo sa 93.46
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 93.41
d1q1ua_138 Fibrobast growth factor homologous factor 1 (FHF1b 91.95
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 90.96
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 90.59
d2ihoa1154 Agglutinin MOA, N-terminal domain {Fairy-ring mush 90.46
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 90.23
d1qqka_132 Keratinocyte growth factor, FGF7 {Rat (Rattus norv 90.08
d1ijta_128 Fibroblast growth factor 4 (FGF4) {Human (Homo sap 87.91
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 87.32
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 85.18
d1ihka_157 Fibroblast growth factor 9, FGF9 {Human (Homo sapi 85.01
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 82.41
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: Hypothetical protein R12E2.13 (1D10)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.2e-54  Score=330.08  Aligned_cols=162  Identities=44%  Similarity=0.778  Sum_probs=151.3

Q ss_pred             CccCCCeeEEEeecccCCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCC
Q 030721            1 MHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPI   80 (172)
Q Consensus         1 ~h~~t~~~LHSh~~~y~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~   80 (172)
                      ||++||+|||||...||.||+|||||||.+..|.|++|+|++.....+..+.+|++||+|||+|+.|++|||||++++|+
T Consensus        16 ~~~~t~~~LHSH~~~Y~~gS~qQqVT~~~~~~d~Nn~W~I~~~~~~~~~~~~~vk~Gd~IrL~H~~T~~~L~sh~~~sp~   95 (178)
T d1t9fa_          16 INANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPL   95 (178)
T ss_dssp             EETTTCCEEEEEEEECSSSSCCEEEEEESCSSCGGGCEEEEECTTCCCCTTCBCCTTCEEEEEETTTCCEEEEEEEECSS
T ss_pred             EECCCCCceecCcccCCCCCCCceEEEeCCcccCCCcEEEecCCCCCCCCCcEecCCCEEEEEEcCCCceEecCCcCCCC
Confidence            68999999999999999999999999999966889999999988777778899999999999999999999999999999


Q ss_pred             CC-CeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcCCCCCCcEE
Q 030721           81 SG-NLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWL  159 (172)
Q Consensus        81 S~-~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~~~~~~~W~  159 (172)
                      |+ ++||+|++..+.+|.+|.|+||+.  +..+..++.|||+|+.|||||++++.+||+|+++|+||+|.++++.+++|+
T Consensus        96 s~~~~eVs~~g~~~~~d~~d~W~Vei~--~~~~~~~~~fRL~H~~t~~yL~ss~~~lp~~~~~Q~EV~~~~~~~~~~~W~  173 (178)
T d1t9fa_          96 SKQHQEVSAFGSEAESDTGDDWTVICN--GDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGSAWK  173 (178)
T ss_dssp             CTTSEEEEEECCTTTCCGGGCEEEECS--SSSCBTTSEEEEEETTTCCEEEEEEEECCTTSTTCEEEEEESSCCTTCCEE
T ss_pred             CccceEEEEeccCCcccccCCEEEEEc--CCeecccceEEEEEccCCeEEecCccccCCCCCcceEEEecCCCCCCCEEE
Confidence            95 789999998778899999999986  456788999999999999999999999999999999999999888899999


Q ss_pred             EEEee
Q 030721          160 AAEGV  164 (172)
Q Consensus       160 ve~~~  164 (172)
                      ||+++
T Consensus       174 ve~gi  178 (178)
T d1t9fa_         174 VAEGI  178 (178)
T ss_dssp             EECCC
T ss_pred             eccCC
Confidence            99985
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]} Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure