Citrus Sinensis ID: 030724

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSIF
cccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHccEEEEEEccccEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHccccEEEEEEccccccc
ccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHcccEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHEHHEHHcccEccc
MFSTPKAFVKIYfncphassspesevLTDIFTRLLLDYLNEYAYYAQVAGLdyginhtesGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKeyhnnkflqpFQLAMYYCSLilqdqtwpwmeelevlphleaedlaKFVPMMLSRTFLEcyiagpsvsif
MFSTPKAFVKIYFNcphassspeseVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYiagpsvsif
MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSIF
******AFVKIYFNCPH*******EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAG******
MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSI*
MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSIF
MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSIF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query172 2.2.26 [Sep-21-2011]
O22941 970 Zinc-metallopeptidase, pe yes no 0.965 0.171 0.765 2e-73
Q24K02 1019 Insulin-degrading enzyme yes no 0.959 0.161 0.375 2e-22
P14735 1019 Insulin-degrading enzyme no no 0.959 0.161 0.375 2e-22
P35559 1019 Insulin-degrading enzyme yes no 0.959 0.161 0.375 3e-22
Q9JHR7 1019 Insulin-degrading enzyme yes no 0.959 0.161 0.369 3e-21
O14077 969 Putative zinc protease mu yes no 0.959 0.170 0.303 1e-19
Q06010 1027 A-factor-processing enzym yes no 0.959 0.160 0.296 1e-18
P22817 990 Insulin-degrading enzyme yes no 0.959 0.166 0.303 6e-17
O43847 1150 Nardilysin OS=Homo sapien no no 0.976 0.146 0.341 7e-16
Q5R4H6 1152 Nardilysin OS=Pongo abeli no no 0.976 0.145 0.341 8e-16
>sp|O22941|PXM16_ARATH Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1 Back     alignment and function desciption
 Score =  274 bits (701), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 127/166 (76%), Positives = 148/166 (89%)

Query: 1   MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTES 60
           MFS PKA+VK+ FNCP A SSP++ VLTDIFTRLL+DYLNEYAYYAQVAGL YG++ +++
Sbjct: 526 MFSKPKAYVKMDFNCPLAVSSPDAAVLTDIFTRLLMDYLNEYAYYAQVAGLYYGVSLSDN 585

Query: 61  GFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYY 120
           GFE+T++GYNHKLRILLET+  KIA F+VKPDRF+VIKE VTKEY N KF QP+  AMYY
Sbjct: 586 GFELTLLGYNHKLRILLETVVGKIANFEVKPDRFAVIKETVTKEYQNYKFRQPYHQAMYY 645

Query: 121 CSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAG 166
           CSLILQDQTWPW EEL+VL HLEAED+AKFVPM+LSRTF+ECYIAG
Sbjct: 646 CSLILQDQTWPWTEELDVLSHLEAEDVAKFVPMLLSRTFIECYIAG 691
Peptidase that might be involved in pathogen or wound response. Not required for peroxisome biogenesis, indole-3-butyric acid (IBA) metabolism, fatty acid beta-oxidation or degradation of glyoxylate cycle enzymes during seedling development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1 Back     alignment and function description
>sp|P14735|IDE_HUMAN Insulin-degrading enzyme OS=Homo sapiens GN=IDE PE=1 SV=4 Back     alignment and function description
>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|O14077|MU138_SCHPO Putative zinc protease mug138 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug138 PE=1 SV=1 Back     alignment and function description
>sp|Q06010|STE23_YEAST A-factor-processing enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE23 PE=1 SV=2 Back     alignment and function description
>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1 SV=4 Back     alignment and function description
>sp|O43847|NRDC_HUMAN Nardilysin OS=Homo sapiens GN=NRD1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4H6|NRDC_PONAB Nardilysin OS=Pongo abelii GN=NRD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
225441825 965 PREDICTED: zinc-metallopeptidase, peroxi 0.965 0.172 0.825 1e-77
224087014 949 predicted protein [Populus trichocarpa] 0.965 0.174 0.819 3e-77
255582581 967 Insulin-degrading enzyme, putative [Rici 0.994 0.176 0.777 7e-74
110741612 970 putative zinc protease [Arabidopsis thal 0.965 0.171 0.765 7e-72
15227435 970 insulysin [Arabidopsis thaliana] gi|7509 0.965 0.171 0.765 7e-72
297827829 970 peptidase M16 family protein [Arabidopsi 0.965 0.171 0.759 7e-71
255582579 909 Insulin-degrading enzyme, putative [Rici 0.965 0.182 0.734 1e-70
356572034 964 PREDICTED: zinc-metallopeptidase, peroxi 0.965 0.172 0.771 2e-70
356504785 964 PREDICTED: zinc-metallopeptidase, peroxi 0.965 0.172 0.753 2e-69
225441823 965 PREDICTED: zinc-metallopeptidase, peroxi 0.965 0.172 0.759 5e-69
>gi|225441825|ref|XP_002283993.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739661|emb|CBI29843.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 151/166 (90%)

Query: 1   MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTES 60
           MFSTPKA+VKI FNCP ASSSPE++VLTDIFTRLL+DYLNEYAYYAQVAGL YGINHT+S
Sbjct: 519 MFSTPKAYVKIDFNCPFASSSPEADVLTDIFTRLLMDYLNEYAYYAQVAGLYYGINHTDS 578

Query: 61  GFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYY 120
           GF+V V GYNHKLRILLET+ +KIA FKVKPDRF VIKEMVTKEY N KF QP+Q AMYY
Sbjct: 579 GFQVAVTGYNHKLRILLETVVEKIANFKVKPDRFLVIKEMVTKEYQNFKFQQPYQQAMYY 638

Query: 121 CSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAG 166
           CSLILQD TWPWM+ LEV+PHLEA+DLAKFVPM+LSR FL+CYIAG
Sbjct: 639 CSLILQDNTWPWMDGLEVIPHLEADDLAKFVPMLLSRAFLDCYIAG 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224087014|ref|XP_002308028.1| predicted protein [Populus trichocarpa] gi|222854004|gb|EEE91551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582581|ref|XP_002532073.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528255|gb|EEF30307.1| Insulin-degrading enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|110741612|dbj|BAE98754.1| putative zinc protease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15227435|ref|NP_181710.1| insulysin [Arabidopsis thaliana] gi|75097648|sp|O22941.1|PXM16_ARATH RecName: Full=Zinc-metallopeptidase, peroxisomal; AltName: Full=Peroxisomal M16 protease gi|2335108|gb|AAC02769.1| putative zinc protease [Arabidopsis thaliana] gi|330254939|gb|AEC10033.1| insulysin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827829|ref|XP_002881797.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297327636|gb|EFH58056.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255582579|ref|XP_002532072.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528254|gb|EEF30306.1| Insulin-degrading enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356572034|ref|XP_003554175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|356504785|ref|XP_003521175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|225441823|ref|XP_002283970.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739662|emb|CBI29844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
TAIR|locus:2054346 970 AT2G41790 [Arabidopsis thalian 0.965 0.171 0.765 1.8e-67
TAIR|locus:2103523 891 AT3G57470 [Arabidopsis thalian 0.959 0.185 0.703 1.4e-61
TAIR|locus:2103513356 AT3G57460 [Arabidopsis thalian 0.633 0.306 0.522 2.5e-26
UNIPROTKB|F1SC98 990 IDE "Uncharacterized protein" 0.959 0.166 0.375 1.6e-22
ZFIN|ZDB-GENE-070410-85 998 ide "insulin-degrading enzyme" 0.959 0.165 0.369 1.6e-22
UNIPROTKB|Q24K02 1019 IDE "Insulin-degrading enzyme" 0.959 0.161 0.375 1.7e-22
UNIPROTKB|E2RGZ3 1019 IDE "Uncharacterized protein" 0.959 0.161 0.375 1.7e-22
UNIPROTKB|P14735 1019 IDE "Insulin-degrading enzyme" 0.959 0.161 0.375 1.7e-22
RGD|2861 1019 Ide "insulin degrading enzyme" 0.959 0.161 0.375 2.8e-22
ASPGD|ASPL0000015933 1100 AN8044 [Emericella nidulans (t 0.959 0.15 0.333 4e-22
TAIR|locus:2054346 AT2G41790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 686 (246.5 bits), Expect = 1.8e-67, P = 1.8e-67
 Identities = 127/166 (76%), Positives = 148/166 (89%)

Query:     1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTES 60
             MFS PKA+VK+ FNCP A SSP++ VLTDIFTRLL+DYLNEYAYYAQVAGL YG++ +++
Sbjct:   526 MFSKPKAYVKMDFNCPLAVSSPDAAVLTDIFTRLLMDYLNEYAYYAQVAGLYYGVSLSDN 585

Query:    61 GFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYY 120
             GFE+T++GYNHKLRILLET+  KIA F+VKPDRF+VIKE VTKEY N KF QP+  AMYY
Sbjct:   586 GFELTLLGYNHKLRILLETVVGKIANFEVKPDRFAVIKETVTKEYQNYKFRQPYHQAMYY 645

Query:   121 CSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAG 166
             CSLILQDQTWPW EEL+VL HLEAED+AKFVPM+LSRTF+ECYIAG
Sbjct:   646 CSLILQDQTWPWTEELDVLSHLEAEDVAKFVPMLLSRTFIECYIAG 691
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2103523 AT3G57470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103513 AT3G57460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC98 IDE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-85 ide "insulin-degrading enzyme" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K02 IDE "Insulin-degrading enzyme" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ3 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P14735 IDE "Insulin-degrading enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2861 Ide "insulin degrading enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ASPGD|ASPL0000015933 AN8044 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22941PXM16_ARATH3, ., 4, ., 2, 4, ., -0.76500.96510.1711yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025592001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (965 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 3e-29
PRK15101 961 PRK15101, PRK15101, protease3; Provisional 8e-04
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  112 bits (282), Expect = 3e-29
 Identities = 48/164 (29%), Positives = 81/164 (49%)

Query: 3   STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGF 62
             PKA V +    PHAS SP ++VLT+++  L  D L++ +Y A +AGL + +    +G 
Sbjct: 523 VEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGL 582

Query: 63  EVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCS 122
           ++T+ G+  +L  LL      +    V  DRF   K  +++E  N    +P++ A+   +
Sbjct: 583 DLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLT 642

Query: 123 LILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAG 166
            +LQ   W   E    L  +  E+ A F   +L+   LE  + G
Sbjct: 643 GLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLG 686

Length = 937
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 172
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.97
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.97
PRK15101 961 protease3; Provisional 99.94
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 99.36
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 99.34
PRK15101 961 protease3; Provisional 99.07
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 98.9
KOG0960 467 consensus Mitochondrial processing peptidase, beta 98.51
PTZ00432 1119 falcilysin; Provisional 98.31
KOG2067472 consensus Mitochondrial processing peptidase, alph 97.83
KOG2583 429 consensus Ubiquinol cytochrome c reductase, subuni 97.6
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 97.59
KOG2067 472 consensus Mitochondrial processing peptidase, alph 97.58
KOG0960467 consensus Mitochondrial processing peptidase, beta 97.49
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 97.19
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 96.98
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 96.61
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 96.39
PTZ00432 1119 falcilysin; Provisional 96.38
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 96.32
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 93.48
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 92.54
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 87.85
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 83.25
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 80.9
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.97  E-value=5.3e-31  Score=225.39  Aligned_cols=171  Identities=41%  Similarity=0.694  Sum_probs=167.5

Q ss_pred             CCCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHH
Q 030724            1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI   80 (172)
Q Consensus         1 ~F~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i   80 (172)
                      +|++||+.+.+.+.+|.+..+|.+++++.+|..++++.++|..|+|..||++++++.+..|+.++|.||++|++.+++.+
T Consensus       528 ~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~  607 (974)
T KOG0959|consen  528 KFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKV  607 (974)
T ss_pred             ccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchhe
Q 030724           81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL  160 (172)
Q Consensus        81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~  160 (172)
                      ++.+.++.+++++|+.+|+.+.++|+|...++|+.+|.+++..++.+..|+.++++++++.+|++|+..|...++++.++
T Consensus       608 ~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~  687 (974)
T KOG0959|consen  608 VQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHL  687 (974)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhhe
Confidence            99999999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCCCC
Q 030724          161 ECYIAGPSVSI  171 (172)
Q Consensus       161 ~~lv~GN~~~~  171 (172)
                      +++|+||++++
T Consensus       688 e~~i~GN~te~  698 (974)
T KOG0959|consen  688 ELLIHGNLTEK  698 (974)
T ss_pred             EEEEecCcchH
Confidence            99999999864

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
3qz2_A 990 The Structure Of Cysteine-Free Human Insulin Degrad 4e-24
3e4a_A 1019 Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut 4e-24
2wby_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 5e-24
3hgz_A 969 Crystal Structure Of Human Insulin-Degrading Enzyme 5e-24
3cww_A 990 Crystal Structure Of Ide-Bradykinin Complex Length 5e-24
3e4z_A 990 Crystal Structure Of Human Insulin Degrading Enzyme 5e-24
2jg4_A 990 Substrate-Free Ide Structure In Its Closed Conforma 2e-23
2g47_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 2e-23
3p7l_A 978 Rat Insulin Degrading Enzyme (Insulysin) Length = 9 2e-23
3p7o_A 1019 Rat Insulin Degrading Enzyme (Insulysin) E111f Muta 2e-23
3tuv_A 1019 Crystal Structure Of Insulysin With Bound Atp Lengt 2e-23
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 89/165 (53%)
Query: 2   FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
           F  PKA +   F  P A   P    +  ++  LL D LNEYAY A++AGL Y + +T  G
Sbjct: 538 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597
Query: 62  FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
             ++V GYN K  ILL+ I +K+A F++   RF +IKE   +  +N +  QP Q AMYY 
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657
Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAG 166
            L++ +  W   E  E L  +    L  F+P +LSR  +E  + G
Sbjct: 658 RLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHG 702
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019 Back     alignment and structure
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990 Back     alignment and structure
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969 Back     alignment and structure
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990 Back     alignment and structure
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990 Back     alignment and structure
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990 Back     alignment and structure
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990 Back     alignment and structure
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978 Back     alignment and structure
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019 Back     alignment and structure
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 2e-41
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 4e-38
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
 Score =  146 bits (370), Expect = 2e-41
 Identities = 62/165 (37%), Positives = 89/165 (53%)

Query: 2   FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
           F  PKA +   F  P A   P    +  ++  LL D LNEYAY A++AGL Y + +T  G
Sbjct: 538 FFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597

Query: 62  FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
             ++V GYN K  ILL+ I +K+A F++   RF +IKE   +  +N +  QP Q AMYY 
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657

Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAG 166
            L++ +  W   E  E L  +    L  F+P +LSR  +E  + G
Sbjct: 658 RLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHG 702
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.91
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.9
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 99.69
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 99.65
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 99.64
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 99.6
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 99.59
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 99.58
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 99.49
3eoq_A 406 Putative zinc protease; two similar domains of bet 99.49
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 99.47
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 99.43
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 99.39
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 99.37
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.29
3go9_A 492 Insulinase family protease; IDP00573, structural g 99.19
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.07
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.99
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 98.89
3gwb_A434 Peptidase M16 inactive domain family protein; pept 98.71
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 98.68
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.67
3eoq_A406 Putative zinc protease; two similar domains of bet 98.66
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.65
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 98.63
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 98.56
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 98.52
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 98.5
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 98.48
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 98.44
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 98.43
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 98.32
3go9_A492 Insulinase family protease; IDP00573, structural g 98.23
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 97.53
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
Probab=99.91  E-value=1.8e-23  Score=182.33  Aligned_cols=169  Identities=18%  Similarity=0.288  Sum_probs=161.4

Q ss_pred             CCCc-eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHH
Q 030724            2 FSTP-KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI   80 (172)
Q Consensus         2 F~~P-k~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i   80 (172)
                      |++| ++.|.+.+.+|....++++.+++.|+..++.+.+.+..|.+.++|++++++. .+|+.+.++|++++++.+++.+
T Consensus       519 f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll  597 (939)
T 1q2l_A          519 FASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQAL  597 (939)
T ss_dssp             CTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHH
T ss_pred             cCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHH
Confidence            6776 9999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchhe
Q 030724           81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL  160 (172)
Q Consensus        81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~  160 (172)
                      .+.+.++.+++++|+++|++++++++|...++|+.++.+.+..+++.+.|+..+.++.|+++|++|+.+|+++++++.++
T Consensus       598 ~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~  677 (939)
T 1q2l_A          598 LEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARP  677 (939)
T ss_dssp             HHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEE
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence            99999999999999999999999999997767999999999999998889888999999999999999999999999999


Q ss_pred             eEEeecCCCCC
Q 030724          161 ECYIAGPSVSI  171 (172)
Q Consensus       161 ~~lv~GN~~~~  171 (172)
                      +++|+||++++
T Consensus       678 ~~~vvGn~~~~  688 (939)
T 1q2l_A          678 EFMVIGNMTEA  688 (939)
T ss_dssp             EEEEEESCCHH
T ss_pred             EEEEEcCCCHH
Confidence            99999999863
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 172
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 4e-20
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 1/165 (0%)

Query: 2   FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG 61
            S PKA V +    P A  S  ++V+  +   L    L++ +  A V G+ +   +  +G
Sbjct: 40  ASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFST-NANNG 98

Query: 62  FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYC 121
             V   GY  +L  L + + +    +    D+    K    +   + +  + F+ A+   
Sbjct: 99  LMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPA 158

Query: 122 SLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAG 166
            ++ Q   +   E  ++LP +  +++  +   + S    E  + G
Sbjct: 159 QMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIG 203

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.96
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.57
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.55
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.53
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.51
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.5
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.45
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.43
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.2
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.03
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.02
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 98.89
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.88
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.63
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 98.45
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 98.17
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 97.39
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 93.14
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 88.24
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.8e-28  Score=177.45  Aligned_cols=169  Identities=19%  Similarity=0.301  Sum_probs=161.2

Q ss_pred             CC-CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHH
Q 030724            2 FS-TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI   80 (172)
Q Consensus         2 F~-~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i   80 (172)
                      |. +|++.+.+.+.+|...+++++.+++.|+..++.+.+++..|.|+.+|+++++.. .+|+.+.++||+++++.+++.+
T Consensus        39 f~~~P~~~i~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~e~~~~a~~~g~~~~~~~-~~~~~i~~~~~s~~l~~~l~~~  117 (229)
T d1q2la1          39 FASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQAL  117 (229)
T ss_dssp             CTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHH
T ss_pred             cCCCCEEEEEEEEEecccccChhHHHHHHHHHHHHHhhhhhHHHHHHhccccccccc-cceEEEEEEeehHHHHHHHHHH
Confidence            54 799999999999999999999999999999999999999999999999999875 5789999999999999999999


Q ss_pred             HHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchhe
Q 030724           81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL  160 (172)
Q Consensus        81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~  160 (172)
                      ++.+.++.+++++|+++|+++.+++++.....|+.++...+..+..++.|+..+.+++|+++|++|+++|+++++++.++
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~  197 (229)
T d1q2la1         118 LEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARP  197 (229)
T ss_dssp             HHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEE
T ss_pred             HHHhcCccCcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcccCCCcchhhHHHHhhhhHHHHHHHHHHhcCccCE
Confidence            99999999999999999999999999999888999999988888888899999999999999999999999999999999


Q ss_pred             eEEeecCCCCC
Q 030724          161 ECYIAGPSVSI  171 (172)
Q Consensus       161 ~~lv~GN~~~~  171 (172)
                      +++|+||++++
T Consensus       198 ~~~i~Gn~~~~  208 (229)
T d1q2la1         198 EFMVIGNMTEA  208 (229)
T ss_dssp             EEEEEESCCHH
T ss_pred             EEEEEcCCCHH
Confidence            99999999864
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure