Citrus Sinensis ID: 030732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQISA
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccccccEEEEEcccccEEEEEEEEEcccccccccEEEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEccccccHHHHHHHccccHHHHHHHHHHHHHHHHHcHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEccccccEEEEHHccccEEEEEEEEEEcccccccccEEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEccccccccEEEEEEEEEcccEcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAiwlqipssgtkcvseeiNSNVVVLADYyvideahpehpptvsakvtspygnnlhhnenvthgqfafttteagNYMACFwlgsnpqkvadatlgldwrigfsakdwesvakkdkieassLNYSFLLKLESGLRFLQISA
Flexible Loop (DISEMBL)
mgetlisldrATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLklesglrflqisa
Low Complexity Region (SEG)
MGETLISLDRATvlplilllclacyicvvPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQISA
Disordered region (IsUnstruct)
****LISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEA***************YGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFL****
Disordered Region (DISOPRED)
************VLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH*N*NVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWE**A***KIEASSLNYSFLLKLESGLRFLQI**
Disordered Region (DISEMBL)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQISA
Disordered Region (DISPRO)
*GETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQIS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQISA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q8RWM6	216	Transmembrane emp24 domai	yes	no	0.866	0.689	0.62	6e-49
Q6IDL4	217	Transmembrane emp24 domai	no	no	0.831	0.658	0.571	2e-43
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.854	0.693	0.503	8e-39
F4J4Y0	217	Transmembrane emp24 domai	no	no	0.877	0.695	0.454	5e-32
Q9LQY3	214	Transmembrane emp24 domai	no	no	0.854	0.686	0.377	1e-23
Q8GYG1	212	Transmembrane emp24 domai	no	no	0.837	0.679	0.354	5e-20
Q8VY92	214	Transmembrane emp24 domai	no	no	0.796	0.640	0.383	5e-20
Q9LJV9	225	Transmembrane emp24 domai	no	no	0.668	0.511	0.352	2e-17
O81045	213	Transmembrane emp24 domai	no	no	0.686	0.553	0.344	6e-17
Q5E971	219	Transmembrane emp24 domai	yes	no	0.668	0.525	0.301	3e-11

>sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1

 Score =  193 bits (490), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 111/150 (74%), Gaps = 1/150 (0%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVS 76
           L L +  +   V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS
Sbjct: 11  LFLTVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVS 70

Query: 77  AKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSA 136
           +KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +A
Sbjct: 71  SKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAA 130

Query: 137 KDWESVAKKDKIEASSLNYSFLLKLESGLR 166
           KDW+SVAKK+KIE   L    L  L   +R
Sbjct: 131 KDWDSVAKKEKIEGVELQLRRLEGLVLSIR 160

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 103/147 (70%), Gaps = 4/147 (2%)

Query: 19  LLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAK 78
            L L     ++PV EA+WL +P +GTKCVSEEI SNVVVLADY +I E H E  PT+S K
Sbjct: 15  FLLLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDH-EVMPTISVK 73

Query: 79  VTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKD 138
           VTSPYGNNLH+ ENVTHGQFAFTT E+GNY+ACFW         + ++ +DWR G +AKD
Sbjct: 74  VTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKD 133

Query: 139 WESVAKKDKIEASSLNYSFLLKLESGL 165
           W S+AKK+KIE   L    + KLE  +
Sbjct: 134 WASIAKKEKIEGVELE---IRKLEGAV 157

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score =  159 bits (402), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 101/149 (67%), Gaps = 2/149 (1%)

Query: 10  RATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHP 69
           +  ++P  +LL  A    + P+ EA+WL +P +G+KCVSEEI SNV+VLADY VI E H 
Sbjct: 2   KKKMIPTTILLS-ALIFSLSPICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHS 60

Query: 70  EHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLD 129
             P TVS KVT+PYG  LHH EN T+GQFAFTT E+G Y+ACF   +      D ++ +D
Sbjct: 61  IFP-TVSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINID 119

Query: 130 WRIGFSAKDWESVAKKDKIEASSLNYSFL 158
           W+ G +AKDW+S+A+K+KIE   L +  L
Sbjct: 120 WKTGIAAKDWDSIARKEKIEGVELEFKKL 148

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J4Y0|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 3/154 (1%)

Query: 16  LILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTV 75
            I L+ LA    + P  EAIWL +P SG +CV EEI +NVVV+ DY  ID+A  +  PT+
Sbjct: 8   FIGLIYLAGGGSLFPGVEAIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGPTL 67

Query: 76  SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWL---GSNPQKVADATLGLDWRI 132
             +VTSPYG  L+   NVTHGQ AFTT+E+G ++AC  +    S+    +   + LDW++
Sbjct: 68  DVRVTSPYGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKM 127

Query: 133 GFSAKDWESVAKKDKIEASSLNYSFLLKLESGLR 166
           G  AKDW+SVAKK+KIE   L      +  S +R
Sbjct: 128 GIRAKDWDSVAKKEKIEGVELEIRRSTEYASAIR 161

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 12/159 (7%)

Query: 5   LISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI 64
           L SL+  T+L   L L ++       V++++  ++ S  TKC+SE+I SN + +  Y V+
Sbjct: 3   LRSLNLCTIL---LFLAISS-----QVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVV 54

Query: 65  D--EAHPE-HPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKV 121
           +  EAHP      +S +VTS YGN  HH E+V  GQFAFT  E+G+YMAC+    +  +V
Sbjct: 55  NPNEAHPSPQSHKISIRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEV 114

Query: 122 ADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLK 160
              ++  DWR G  +K W SVAKK ++E    +   L++
Sbjct: 115 T-LSIDFDWRTGVQSKSWSSVAKKSQVEVMEFDVKRLIE 152

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 11/155 (7%)

Query: 17  ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT- 74
           I+LL L+    + PVT +I  ++ S  TKC+SEEI++N + +  Y +I+  H +HP P+ 
Sbjct: 8   IVLLILSI---LSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIIN-PHEDHPLPSS 63

Query: 75  --VSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACF-WLGSNPQKVADATLGLDWR 131
             V+ +VTSP G   H ++ V  GQF+F   E G+Y++CF  +   P+      +  DWR
Sbjct: 64  HKVTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKPE--TTLIIDFDWR 121

Query: 132 IGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLR 166
            G   KDW +VAKK ++E        L +  +G+ 
Sbjct: 122 TGIHTKDWSNVAKKSQVETMEFEVKKLFETVNGIH 156

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 82/146 (56%), Gaps = 9/146 (6%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH--PPT- 74
           +LL LA +    P++ ++   + S  TKC++E+I SN + +  Y  ID  H     P T 
Sbjct: 11  MLLILAIW---SPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYN-IDNPHEGQALPQTH 66

Query: 75  -VSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIG 133
            +S KVTS  GNN HH E V  GQFAF+  EAG+YMACF    +  +V+  ++  +W+ G
Sbjct: 67  KISVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVS-LSIDFEWKTG 125

Query: 134 FSAKDWESVAKKDKIEASSLNYSFLL 159
             +K W +VAKK ++E        LL
Sbjct: 126 VQSKSWANVAKKSQVEVMEFEVKSLL 151

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJV9|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana GN=At3g29070 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 4/119 (3%)

Query: 33  EAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH-PPT--VSAKVTSPYGNNLHH 89
           E++ L + S  TKC+S++I +N + +  Y +++     H PP+  +   V+SP G + HH
Sbjct: 34  ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query: 90  NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKI 148
            ENV  G+F FT  E G+YM CF +    +  A   +  +W+ G  AKDW ++AK+ +I
Sbjct: 94  AENVESGKFVFTAEETGDYMTCF-VAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQI 151

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O81045|P24D8_ARATH Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana GN=At2g03290 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 7/125 (5%)

Query: 30  PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP----PTVSAKVTSPYGN 85
           P T ++  ++ SS TKC+ EEI+ N + +  Y++++     HP      +  KV  P G 
Sbjct: 18  PRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGK 77

Query: 86  NLHHNENVTHGQFAFTTTEAGNYMACFW-LGSNPQKVADATLGLDWRIGFSAKDWESVAK 144
           NLH  + V  GQF+FT  E G+Y+AC   +   P+     T+  DW+ G  +K+W +VAK
Sbjct: 78  NLHEADKVEAGQFSFTAYENGSYVACITAIDYKPE--TTLTIDFDWKTGVHSKEWTNVAK 135

Query: 145 KDKIE 149
           K +++
Sbjct: 136 KSQVD 140

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 34  AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV 93
           AI   +P +  KC+ EEI+ +++V   Y + D++          K+T   G+ L+  E+ 
Sbjct: 31  AISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTHLKITDSAGHILYSKEDA 90

Query: 94  THGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
           T G+FAFTT +   +  CF       ++ D  + LD + G  AK++E +AK +K++
Sbjct: 91  TKGKFAFTTEDYDMFEVCFE-SKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLK 145

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED2 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport involved in the biogenesis of COPI vesicles and vesicle coat recruitment. On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation. Increases coatomer-dependent GTPase-activating activity of ARFGAP2. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2LR1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Involved in trafficking of amyloid beta A4 protein and soluble APP-beta release (independent of modulation of gamma-secretase activity). As part of the presenilin-dependent gamma-secretase complex regulates gamma-cleavages of the amyloid beta A4 protein to yield amyloid-beta 40 (Abeta40). Involved in organization of the Golgi apparatus.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
255545458	219	Transmembrane emp24 domain-containing pr	0.883	0.694	0.619	7e-53
118484307	222	unknown [Populus trichocarpa]	0.837	0.648	0.662	1e-50
224066849	221	predicted protein [Populus trichocarpa]	0.837	0.651	0.662	1e-50
15219136	216	emp24/gp25L/p24 family/GOLD domain-conta	0.866	0.689	0.62	2e-47
6552742	151	T26F17.12 [Arabidopsis thaliana]	0.790	0.900	0.671	3e-47
147856607	207	hypothetical protein VITISV_039788 [Viti	0.802	0.666	0.624	5e-46
225448026	216	PREDICTED: transmembrane emp24 domain-co	0.802	0.638	0.624	5e-46
297850614	216	emp24/gp25L/p24 family protein [Arabidop	0.860	0.685	0.610	1e-45
356548965	220	PREDICTED: LOW QUALITY PROTEIN: transmem	0.843	0.659	0.585	6e-45
351724845	220	uncharacterized protein LOC100527637 [Gl	0.831	0.65	0.6	7e-45

>gi|255545458|ref|XP_002513789.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis] gi|223546875|gb|EEF48372.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 121/155 (78%), Gaps = 3/155 (1%)

Query: 12  TVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH 71
           +++ ++ L  L     V+PV EAIW  IPSSGTKCVSEEI +NVVVLADYY+I+E  P+H
Sbjct: 9   SLVAVLSLFVLCSSFDVIPVAEAIWFTIPSSGTKCVSEEIQNNVVVLADYYIINEDQPQH 68

Query: 72  PPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWR 131
            PT+S KVTSPYGNNLHHNENVTHGQFAFTT+EAGNY+ACFWL ++ Q+    T+ LDWR
Sbjct: 69  APTISVKVTSPYGNNLHHNENVTHGQFAFTTSEAGNYLACFWLDNHQQQAGTTTMSLDWR 128

Query: 132 IGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLR 166
           IG +AKDW+SVA+K+KIE   L+   L +LE  ++
Sbjct: 129 IGIAAKDWDSVARKEKIEGVELD---LTRLEGAVQ 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484307|gb|ABK94032.1| unknown [Populus trichocarpa]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 10  RATVLPL-ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH 68
           RA V  L ++LLCL     +VPV EAIWL IP+SGTKCVSEEI ++VVVLADYYV++E H
Sbjct: 9   RAGVTALSLILLCLTISNNIVPVAEAIWLSIPNSGTKCVSEEIQNDVVVLADYYVLNEEH 68

Query: 69  PEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGL 128
           PEHP TV+ +VTSPYGNNLHHNEN THGQFAFTT+E GNY+ACF L  + +     TL L
Sbjct: 69  PEHPVTVTVRVTSPYGNNLHHNENATHGQFAFTTSEGGNYLACFTLDGHQEPATGVTLSL 128

Query: 129 DWRIGFSAKDWESVAKKDKIEASSL 153
           DW+IG +AKDW+SVAKK+KIE   L
Sbjct: 129 DWKIGIAAKDWDSVAKKEKIEGVEL 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066849|ref|XP_002302245.1| predicted protein [Populus trichocarpa] gi|222843971|gb|EEE81518.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 10  RATVLPL-ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH 68
           RA V  L ++LLCL     +VPV EAIWL IP+SGTKCVSEEI ++VVVLADYYV++E H
Sbjct: 8   RAGVTALSLILLCLTISNNIVPVAEAIWLSIPNSGTKCVSEEIQNDVVVLADYYVLNEEH 67

Query: 69  PEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGL 128
           PEHP TV+ +VTSPYGNNLHHNEN THGQFAFTT+E GNY+ACF L  + +     TL L
Sbjct: 68  PEHPVTVTVRVTSPYGNNLHHNENATHGQFAFTTSEGGNYLACFTLDGHQEPATGVTLSL 127

Query: 129 DWRIGFSAKDWESVAKKDKIEASSL 153
           DW+IG +AKDW+SVAKK+KIE   L
Sbjct: 128 DWKIGIAAKDWDSVAKKEKIEGVEL 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219136|ref|NP_173608.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gi|75247611|sp|Q8RWM6.1|P24D5_ARATH RecName: Full=Transmembrane emp24 domain-containing protein p24delta5; AltName: Full=Atp24; AltName: Full=p24 family protein delta1c; Short=p24delta1c; AltName: Full=p24 family protein delta5; Short=p24delta5; Flags: Precursor gi|20260194|gb|AAM12995.1| similar to transmembrane protein [Arabidopsis thaliana] gi|21387055|gb|AAM47931.1| transmembrane protein-like protein [Arabidopsis thaliana] gi|332192049|gb|AEE30170.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 111/150 (74%), Gaps = 1/150 (0%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVS 76
           L L +  +   V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS
Sbjct: 11  LFLTVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVS 70

Query: 77  AKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSA 136
           +KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +A
Sbjct: 71  SKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAA 130

Query: 137 KDWESVAKKDKIEASSLNYSFLLKLESGLR 166
           KDW+SVAKK+KIE   L    L  L   +R
Sbjct: 131 KDWDSVAKKEKIEGVELQLRRLEGLVLSIR 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6552742|gb|AAF16541.1|AC013482_15 T26F17.12 [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 109/137 (79%), Gaps = 1/137 (0%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVS 76
           L L +  +   V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS
Sbjct: 11  LFLTVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVS 70

Query: 77  AKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSA 136
           +KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +A
Sbjct: 71  SKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAA 130

Query: 137 KDWESVAKKDKIEASSL 153
           KDW+SVAKK+KIEAS L
Sbjct: 131 KDWDSVAKKEKIEASLL 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856607|emb|CAN82472.1| hypothetical protein VITISV_039788 [Vitis vinifera]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 106/141 (75%), Gaps = 3/141 (2%)

Query: 29  VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH 88
           +P+++AIWL IPSSGTKCVSEEI +NVVVLADY VI + H    PT+S KVTSPYGNNLH
Sbjct: 14  IPMSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLH 73

Query: 89  HNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKI 148
           H ENVTHGQFAFTT+EAGNY+ACFW+  + Q   D ++ LDW+ G  AKDWESVA+K+KI
Sbjct: 74  HKENVTHGQFAFTTSEAGNYLACFWVNGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKI 133

Query: 149 EASSLNYSFLLKLESGLRFLQ 169
           E   L    L KLE  +  + 
Sbjct: 134 EGVELE---LRKLEGAVEAIH 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448026|ref|XP_002272994.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like [Vitis vinifera]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 106/141 (75%), Gaps = 3/141 (2%)

Query: 29  VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH 88
           +P+++AIWL IPSSGTKCVSEEI +NVVVLADY VI + H    PT+S KVTSPYGNNLH
Sbjct: 23  IPMSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLH 82

Query: 89  HNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKI 148
           H ENVTHGQFAFTT+EAGNY+ACFW+  + Q   D ++ LDW+ G  AKDWESVA+K+KI
Sbjct: 83  HKENVTHGQFAFTTSEAGNYLACFWVDGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKI 142

Query: 149 EASSLNYSFLLKLESGLRFLQ 169
           E   L    L KLE  +  + 
Sbjct: 143 EGVELE---LRKLEGAVEAIH 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850614|ref|XP_002893188.1| emp24/gp25L/p24 family protein [Arabidopsis lyrata subsp. lyrata] gi|297339030|gb|EFH69447.1| emp24/gp25L/p24 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/149 (61%), Positives = 110/149 (73%), Gaps = 1/149 (0%)

Query: 19  LLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSA 77
           +L +  ++  V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS+
Sbjct: 12  VLAVVLFLLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVSS 71

Query: 78  KVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAK 137
           KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACF + S        TLG+DW++G +AK
Sbjct: 72  KVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFSIDSTHPLANPITLGVDWKMGIAAK 131

Query: 138 DWESVAKKDKIEASSLNYSFLLKLESGLR 166
           DW+SVAKK+KIE   L    L  L   +R
Sbjct: 132 DWDSVAKKEKIEGVELQLRRLEGLVQSIR 160

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548965|ref|XP_003542869.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane emp24 domain-containing protein 10-like [Glycine max]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 112/152 (73%), Gaps = 7/152 (4%)

Query: 14  LPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPP 73
           + +++LLC A +  V+P+ EA+WL +P+SGTKC+SEEI SNVVVLADYYV+ +       
Sbjct: 11  ISVVMLLCFAAHFYVLPLAEAVWLTLPTSGTKCLSEEIQSNVVVLADYYVVTQEGG--LQ 68

Query: 74  TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIG 133
           T+S KVTSPYGNNLHHNEN T GQFAFTT E+GNY+ACFW+    Q+  +AT+ LDW+ G
Sbjct: 69  TLSVKVTSPYGNNLHHNENATQGQFAFTTAESGNYVACFWMDGKHQE--EATVSLDWKTG 126

Query: 134 FSAKDWESVAKKDKIEASSLNYSFLLKLESGL 165
             AKDWESVAKK+KIE   L    L KLE  +
Sbjct: 127 IYAKDWESVAKKEKIEGVELE---LRKLEGAV 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724845|ref|NP_001235280.1| uncharacterized protein LOC100527637 [Glycine max] gi|255632826|gb|ACU16766.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 111/150 (74%), Gaps = 7/150 (4%)

Query: 16  LILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTV 75
           ++LLLC   +  V+P+ EA+WL +P+SGTKC+SEEI+SNVVVLADYYV+ +       TV
Sbjct: 13  VVLLLCFVAHFYVLPLAEAVWLTLPTSGTKCLSEEIHSNVVVLADYYVVTQEGG--LQTV 70

Query: 76  SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFS 135
           S KVTSPYGNNLHHNEN T GQFAFTT E+GNY+ACFW+    Q+  +AT+ LDW+ G  
Sbjct: 71  SVKVTSPYGNNLHHNENATQGQFAFTTAESGNYVACFWMDGKHQE--EATVSLDWKTGIY 128

Query: 136 AKDWESVAKKDKIEASSLNYSFLLKLESGL 165
           AKDWESVAKK+KIE   L    L KLE  +
Sbjct: 129 AKDWESVAKKEKIEGVELE---LRKLEGAV 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2201098	216	p24delta5 "p24 subfamily delta	0.75	0.597	0.686	2.1e-45
TAIR|locus:2012335	217	AT1G09580 [Arabidopsis thalian	0.767	0.608	0.602	4.6e-41
TAIR|locus:2206520	212	AT1G57620 [Arabidopsis thalian	0.767	0.622	0.536	2.1e-36
TAIR|locus:2200630	214	AT1G26690 [Arabidopsis thalian	0.744	0.598	0.402	1.1e-23
TAIR|locus:2007196	214	AT1G69460 [Arabidopsis thalian	0.744	0.598	0.388	3.9e-21
TAIR|locus:2014864	212	AT1G14010 [Arabidopsis thalian	0.779	0.632	0.357	4.9e-21
TAIR|locus:2056730	166	AT2G03040 [Arabidopsis thalian	0.686	0.710	0.36	8.3e-19
TAIR|locus:2056976	213	AT2G03290 [Arabidopsis thalian	0.686	0.553	0.352	3.6e-18
TAIR|locus:2092788	225	AT3G29070 [Arabidopsis thalian	0.668	0.511	0.352	4.6e-18
UNIPROTKB|F1S2Q3	219	TMED10 "Uncharacterized protei	0.662	0.520	0.304	1.9e-12

TAIR|locus:2201098 p24delta5 "p24 subfamily delta 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 92/134 (68%), Positives = 108/134 (80%)

Query:    33 EAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE 91
             EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS+KVTSPYGNNLHH E
Sbjct:    26 EAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVSSKVTSPYGNNLHHQE 85

Query:    92 NVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEAS 151
             NVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +AKDW+SVAKK+KIE  
Sbjct:    86 NVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGV 145

Query:   152 SLNYSFLLKLESGL 165
              L    L +LE GL
Sbjct:   146 ELQ---LRRLE-GL 155

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2012335 AT1G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 82/136 (60%), Positives = 99/136 (72%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH 89
             PV EA+WL +P +GTKCVSEEI SNVVVLADY +I E H E  PT+S KVTSPYGNNLH+
Sbjct:    26 PVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDH-EVMPTISVKVTSPYGNNLHN 84

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              ENVTHGQFAFTT E+GNY+ACFW         + ++ +DWR G +AKDW S+AKK+KIE
Sbjct:    85 MENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKDWASIAKKEKIE 144

Query:   150 ASSLNYSFLLKLESGL 165
                L    + KLE  +
Sbjct:   145 GVELE---IRKLEGAV 157

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2206520 AT1G57620 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 73/136 (53%), Positives = 95/136 (69%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH 89
             P+ EA+WL +P +G+KCVSEEI SNV+VLADY VI E H   P TVS KVT+PYG  LHH
Sbjct:    21 PICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHSIFP-TVSVKVTAPYGTVLHH 79

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              EN T+GQFAFTT E+G Y+ACF   +      D ++ +DW+ G +AKDW+S+A+K+KIE
Sbjct:    80 RENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSIARKEKIE 139

Query:   150 ASSLNYSFLLKLESGL 165
                L +    KLE  +
Sbjct:   140 GVELEFK---KLEGAV 152

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2200630 AT1G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 54/134 (40%), Positives = 83/134 (61%)

Query:    31 VTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVID--EAHPEHPPT--VSAKVTSPYGNN 86
             V++++  ++ S  TKC+SE+I SN + +  Y V++  EAHP  P +  +S +VTS YGN 
Sbjct:    21 VSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPS-PQSHKISIRVTSSYGNT 79

Query:    87 LHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKD 146
              HH E+V  GQFAFT  E+G+YMAC+    +  +V   ++  DWR G  +K W SVAKK 
Sbjct:    80 YHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEVT-LSIDFDWRTGVQSKSWSSVAKKS 138

Query:   147 KIEASSLNYSFLLK 160
             ++E    +   L++
Sbjct:   139 QVEVMEFDVKRLIE 152

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2007196 AT1G69460 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 52/134 (38%), Positives = 76/134 (56%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH--PPT--VSAKVTSPYGN 85
             P++ ++   + S  TKC++E+I SN + +  Y  ID  H     P T  +S KVTS  GN
Sbjct:    20 PISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYN-IDNPHEGQALPQTHKISVKVTSNSGN 78

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKK 145
             N HH E V  GQFAF+  EAG+YMACF    +  +V+  ++  +W+ G  +K W +VAKK
Sbjct:    79 NYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVS-LSIDFEWKTGVQSKSWANVAKK 137

Query:   146 DKIEASSLNYSFLL 159
              ++E        LL
Sbjct:   138 SQVEVMEFEVKSLL 151

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2014864 AT1G14010 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 50/140 (35%), Positives = 79/140 (56%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT---VSAKVTSPYGN 85
             PVT +I  ++ S  TKC+SEEI++N + +  Y +I+  H +HP P+   V+ +VTSP G 
Sbjct:    18 PVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIINP-HEDHPLPSSHKVTVRVTSPQGT 76

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKK 145
               H ++ V  GQF+F   E G+Y++CF    +  +     +  DWR G   KDW +VAKK
Sbjct:    77 AYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETT-LIIDFDWRTGIHTKDWSNVAKK 135

Query:   146 DKIEASSLNYSFLLKLESGL 165
              ++E        L +  +G+
Sbjct:   136 SQVETMEFEVKKLFETVNGI 155

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2056730 AT2G03040 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 45/125 (36%), Positives = 72/125 (57%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT---VSAKVTSPYGN 85
             P T ++  ++ SS TKC+ EEI+ N + +  Y++++     HP P    +  KV  P G 
Sbjct:    18 PRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDHHPLPDSHKIIVKVMPPQGK 77

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFW-LGSNPQKVADATLGLDWRIGFSAKDWESVAK 144
             NLH  +NV  GQF+FT  E G+Y+AC   +   P+     T+  DW+ G  +K+W +VAK
Sbjct:    78 NLHEADNVEAGQFSFTAYENGSYVACITAIDYKPETTL--TIDFDWKTGVHSKEWTNVAK 135

Query:   145 KDKIE 149
             K +++
Sbjct:   136 KSQVD 140

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2056976 AT2G03290 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 44/125 (35%), Positives = 71/125 (56%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT---VSAKVTSPYGN 85
             P T ++  ++ SS TKC+ EEI+ N + +  Y++++     HP P    +  KV  P G 
Sbjct:    18 PRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGK 77

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFW-LGSNPQKVADATLGLDWRIGFSAKDWESVAK 144
             NLH  + V  GQF+FT  E G+Y+AC   +   P+     T+  DW+ G  +K+W +VAK
Sbjct:    78 NLHEADKVEAGQFSFTAYENGSYVACITAIDYKPETTL--TIDFDWKTGVHSKEWTNVAK 135

Query:   145 KDKIE 149
             K +++
Sbjct:   136 KSQVD 140

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092788 AT3G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 42/119 (35%), Positives = 69/119 (57%)

Query:    33 EAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH-PPT--VSAKVTSPYGNNLHH 89
             E++ L + S  TKC+S++I +N + +  Y +++     H PP+  +   V+SP G + HH
Sbjct:    34 ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKI 148
              ENV  G+F FT  E G+YM CF +    +  A   +  +W+ G  AKDW ++AK+ +I
Sbjct:    94 AENVESGKFVFTAEETGDYMTCF-VAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQI 151

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S2Q3 TMED10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/115 (30%), Positives = 62/115 (53%)

Query:    35 IWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT 94
             I   +P +  KC+ EEI+ +++V   Y + D++     P    K+T   G+ L+  E+ T
Sbjct:    32 ISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGPRTHLKITDSAGHILYSKEDAT 91

Query:    95 HGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              G+FAFTT +   +  CF       ++ D  + LD + G  AK++E +AK +K++
Sbjct:    92 KGKFAFTTEDYDMFEVCFE-SKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLK 145

GO:0070765 "gamma-secretase complex" evidence=IEA

GO:0045055 "regulated secretory pathway" evidence=IEA

GO:0035964 "COPI-coated vesicle budding" evidence=IEA

GO:0034205 "beta-amyloid formation" evidence=IEA

GO:0030667 "secretory granule membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWM6	P24D5_ARATH	No assigned EC number	0.62	0.8662	0.6898	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020787 SubName- Full=Putative uncharacterized protein; (222 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	7e-21

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score = 83.9 bits (208), Expect = 7e-21
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 34  AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSP--YGNNLHHNE 91
           A+  ++P+   +C  EE+    +V   Y VI   +      +   +T P   GN ++  E
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGNL----DIDFTITDPDGNGNVIYSKE 56

Query: 92  NVTH-GQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
           +    G+F+FT TE+G Y  CF   ++    +  T+  D ++G  AKD   +AKK+K++
Sbjct: 57  DRKSGGKFSFTATESGEYKFCFS--NSFSTFSSKTVSFDIKVGEEAKD---IAKKEKLD 110

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	99.97
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	99.95
KOG1692	201	consensus Putative cargo transport protein EMP24 (	99.94
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	99.91
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	99.87
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	99.86
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	91.68
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	90.59
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	90.42
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	89.44
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	87.62
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	87.28
PRK05842	295	flgD flagellar basal body rod modification protein	84.68
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	84.53
PRK06655	225	flgD flagellar basal body rod modification protein	84.36
PRK02710	119	plastocyanin; Provisional	84.28
PRK12812	259	flgD flagellar basal body rod modification protein	84.27
PRK10378	375	inactive ferrous ion transporter periplasmic prote	83.82
PRK12813	223	flgD flagellar basal body rod modification protein	83.71
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	82.67

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-31  Score=207.18  Aligned_cols=151  Identities=44%  Similarity=0.747  Sum_probs=129.9

Q ss_pred             hhhHHHHHHHHHHhhhccccCeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEe
Q 030732           10 RATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH   89 (172)
Q Consensus        10 ~~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~   89 (172)
                      ++..++++++++       ++.+.|+.|++|+++++|+.|++++|.++.|.|.+.++..+..+ .+++.|+||.|+++++
T Consensus         5 ~~~~~l~i~~~~-------~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~-~~~~~Vts~~G~~~~~   76 (210)
T KOG1691|consen    5 CLSLLLLIFLLL-------LPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSH-KLSVKVTSPYGNNLHS   76 (210)
T ss_pred             hHHHHHHHHHHH-------hhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccc-eEEEEEEcCCCceeeh
Confidence            344444444444       36789999999999999999999999999999999987522223 8999999999999999


Q ss_pred             eeccceeeEEEEeccCceeEEeeeeCCCCC-CcccEEEEEEEEecccccchhhhhhhccCCccccchHHHHHHHHhhhcc
Q 030732           90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQ-KVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFL  168 (172)
Q Consensus        90 ~~~~~~g~f~fta~~~G~y~iCF~n~~~~~-~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~~~~l~~l~~~l~~I  168 (172)
                      +++..+|+|+||+.++|.|.+||.+..... ......|.|||++|++++||+++||+++++|+|.+   +|+|++.+++|
T Consensus        77 ~env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~e---lrrLed~~~sI  153 (210)
T KOG1691|consen   77 KENVTKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVE---LRRLEDLVESI  153 (210)
T ss_pred             hhccccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHH---HHHHHHHHHHH
Confidence            999999999999999999999999832221 23468999999999999999999999999999999   99999999999


Q ss_pred             ccc
Q 030732          169 QIS  171 (172)
Q Consensus       169 ~~~  171 (172)
                      +..
T Consensus       154 ~~e  156 (210)
T KOG1691|consen  154 HEE  156 (210)
T ss_pred             HHH
Confidence            753

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.8e-28  Score=184.80  Aligned_cols=137  Identities=20%  Similarity=0.296  Sum_probs=116.2

Q ss_pred             cCeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEe--eCC--CCCCCC--eeEEEEECCCCC--eEEeeeccceeeEEE
Q 030732           29 VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI--DEA--HPEHPP--TVSAKVTSPYGN--NLHHNENVTHGQFAF  100 (172)
Q Consensus        29 ~~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~--~~~--~~~~~~--~v~v~V~dP~g~--~l~~~~~~~~g~f~f  100 (172)
                      +..++|++|++..+++|||+|++|++++|+|+|.+.  ++.  .++..|  ++.+.|.||.++  .|+++.+.++|+|+|
T Consensus        15 ~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftF   94 (215)
T KOG1690|consen   15 ATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGDFTF   94 (215)
T ss_pred             HhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCceEE
Confidence            578899999999999999999999999999999997  221  122223  899999999888  899999999999999


Q ss_pred             EeccCceeEEeeeeCCCCC-CcccEEEEEEEEecccccchhhhhhhccCCccccchHHHHHHHHhhhcccc
Q 030732          101 TTTEAGNYMACFWLGSNPQ-KVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQI  170 (172)
Q Consensus       101 ta~~~G~y~iCF~n~~~~~-~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~~~~l~~l~~~l~~I~~  170 (172)
                      |+.++|+|+||+.++++.| ...+.+|++|+++|.++++|...  ++..+.++.+   +++|++++.+|+-
T Consensus        95 ta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~~--ke~~k~l~~R---v~~L~~~~~~Irk  160 (215)
T KOG1690|consen   95 TALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQI--KETDKLLEGR---VRQLNSRLESIRK  160 (215)
T ss_pred             EccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhhh--hhhhhhhHHH---HHHHHHHHHHHHH
Confidence            9999999999999876655 45789999999999998886544  4555677779   9999999998864

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9.7e-27  Score=177.72  Aligned_cols=144  Identities=19%  Similarity=0.327  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHhhhccccCeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec
Q 030732           13 VLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN   92 (172)
Q Consensus        13 ~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~   92 (172)
                      +.-+++|+|++.     ..++++-+.+++++++||+|++.+|+.+.++|+|.++   +.. ++|+.|++|.|+++++.++
T Consensus         4 ~~~~~vll~~L~-----~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~g---g~~-~vd~~I~gP~~~~i~~~~~   74 (201)
T KOG1692|consen    4 LASVIVLLGLLF-----ISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDG---GFL-GVDVEITGPDGKIIHKGKR   74 (201)
T ss_pred             hhhHHHHHHHHH-----HHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecC---Ccc-ceeEEEECCCCchhhhccc
Confidence            344556666653     2367888999999999999999999999999999973   344 9999999999999999988


Q ss_pred             cceeeEEEEeccCceeEEeeeeCCCCCCcccEEEEEEEEecccccchhhhhhhccCCccccchHHHHHHHHhhhccccc
Q 030732           93 VTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQIS  171 (172)
Q Consensus        93 ~~~g~f~fta~~~G~y~iCF~n~~~~~~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~~~~l~~l~~~l~~I~~~  171 (172)
                      .+.|+|+|+++.+|.|++||+|..  ++..++.|.|+|++|.. .++++.+++++.++++..   +++|.+.|.+|+.+
T Consensus        75 ~ssgk~tF~a~~~G~Y~fCF~N~~--s~mtpk~V~F~ihvg~~-~~~~d~~~d~~~~~L~~~---I~eL~~al~~Vk~E  147 (201)
T KOG1692|consen   75 ESSGKYTFTAPKKGTYTFCFSNKM--STMTPKTVMFTIHVGHA-PQRDDLAKDAHQNKLEEM---IRELSEALTSVKHE  147 (201)
T ss_pred             ccCceEEEEecCCceEEEEecCCC--CCCCceEEEEEEEEeec-cccchhcccccccHHHHH---HHHHHHHHHHhHHH
Confidence            899999999999999999999654  44578999999998864 455678999999999999   99999999998754

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=9.1e-24  Score=162.29  Aligned_cols=129  Identities=14%  Similarity=0.296  Sum_probs=101.6

Q ss_pred             eeEEEEEEEeCCCcceEeEEcCCCcE-EEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeE
Q 030732           31 VTEAIWLQIPSSGTKCVSEEINSNVV-VLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM  109 (172)
Q Consensus        31 ~~~al~f~l~~~~~~CF~e~v~~~~~-v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~  109 (172)
                      .+..++|+||++.++|||+++++++- ....|+|..   ||+. +||+.|++|+|++|++..++..+.|.|++...|+|+
T Consensus        20 ~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~t---GG~f-DVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~   95 (209)
T KOG1693|consen   20 EASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQT---GGHF-DVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYT   95 (209)
T ss_pred             hcccEEEEcCCcchhheeeecccCCceEEEEEEEEe---CCce-eeEEEEECCCCCEEeeccccccccEEEEEecceEEE
Confidence            37899999999999999999999664 999999996   4566 999999999999999999999999999999999999


Q ss_pred             EeeeeCCCCCCcccEEEEEEEEecccccchhhhhh-hccCCccccchHHHHHHHHhhhcc
Q 030732          110 ACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAK-KDKIEASSLNYSFLLKLESGLRFL  168 (172)
Q Consensus       110 iCF~n~~~~~~~~~~~V~fdi~~G~~~~d~~~~ak-~~~l~~le~~~~~l~~l~~~l~~I  168 (172)
                      +||+|  .+++..++.|++++++|.+........+ +..++.+|..   +..|.++|+.|
T Consensus        96 fCFsN--~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena---~~~I~~~L~~I  150 (209)
T KOG1693|consen   96 FCFSN--EFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENA---IVEIHRALNKI  150 (209)
T ss_pred             EEecC--ccccccceEeeehhhhccccccCccccccchHHHHHHHH---HHHHHHHHHHH
Confidence            99996  4455679999999999965443223211 2233344444   44555555444

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=99.87  E-value=8.9e-24  Score=161.22  Aligned_cols=130  Identities=27%  Similarity=0.462  Sum_probs=0.0

Q ss_pred             EEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEE--CCCCCeEEeeecc-ceeeEEEEeccCceeEE
Q 030732           34 AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVT--SPYGNNLHHNENV-THGQFAFTTTEAGNYMA  110 (172)
Q Consensus        34 al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~--dP~g~~l~~~~~~-~~g~f~fta~~~G~y~i  110 (172)
                      |++|.|+||+++||++++++++.+.++|++.++.  +.. ++++.|+  +|+|+.++++... .+|+|+|++.++|+|++
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~--~~~-~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~i   77 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG--GAY-DVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQI   77 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc--ccc-eEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEE
Confidence            6899999999999999999999999999999643  133 8999999  5666888888655 45799999999999999


Q ss_pred             eeeeCCCCCCcccEEEEEEEEecccccchhhhhhhccCCccccchHHHHHHHHhhhcccc
Q 030732          111 CFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQI  170 (172)
Q Consensus       111 CF~n~~~~~~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~~~~l~~l~~~l~~I~~  170 (172)
                      ||+|..+.+. ..+.|+|++++|.++.++++.++++++++++..   |++|.+.++.|+.
T Consensus        78 Cf~n~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l~~~l~~i~~  133 (183)
T PF01105_consen   78 CFDNSSSSFS-PSKRVSFDIDVGNENKDYKNVAKKEHLDPLEES---LEKLESNLKEIKD  133 (183)
T ss_dssp             ------------------------------------------------------------
T ss_pred             EEEcCCCCcc-ccEEEEEEEEEeecccchhhhhhhhhhhhhHHH---HHHHHHHHHHHHH
Confidence            9998654432 138999999999887788899999999999999   9999999998875

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=7.4e-21  Score=147.92  Aligned_cols=130  Identities=19%  Similarity=0.291  Sum_probs=99.9

Q ss_pred             eEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEe
Q 030732           32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMAC  111 (172)
Q Consensus        32 ~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iC  111 (172)
                      ...++|.||||+++|||+.++.+..+..+|+|+++ +| .. +|++++.+|.|.++.+...+..|.+.+...++|.|++|
T Consensus        33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~G-Dl-~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C  109 (236)
T KOG3287|consen   33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AG-DL-DIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC  109 (236)
T ss_pred             ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CC-cc-ceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence            34589999999999999999999999999999986 23 34 89999999999999999989999999999999999999


Q ss_pred             eeeCCCCCCcccEEEEEEEE---ecccccchhhhhh-hccCCccccchHHHHHHHHhhhccc
Q 030732          112 FWLGSNPQKVADATLGLDWR---IGFSAKDWESVAK-KDKIEASSLNYSFLLKLESGLRFLQ  169 (172)
Q Consensus       112 F~n~~~~~~~~~~~V~fdi~---~G~~~~d~~~~ak-~~~l~~le~~~~~l~~l~~~l~~I~  169 (172)
                      |+|+.+  ..+.+.|+|++-   .|+....++.-.| ++..+.+..+   |+.+++.++.|+
T Consensus       110 fDNsFS--~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~k---l~di~~~i~~i~  166 (236)
T KOG3287|consen  110 FDNSFS--TFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVK---LDDIEDSIGTIK  166 (236)
T ss_pred             EcCccc--cccceEEEEEEEeccccchhccchhHhhhhhhhhhhccc---HHHHHHHHHHHH
Confidence            997544  456899999993   3443322222222 2222355666   666666655554

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=91.68  E-value=0.89  Score=31.50  Aligned_cols=53  Identities=11%  Similarity=0.045  Sum_probs=25.2

Q ss_pred             EcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEE
Q 030732           50 EINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMA  110 (172)
Q Consensus        50 ~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~i  110 (172)
                      .+++|..+++.+.-.+.     . .-++.+.+  ...-..-.......+.|++..+|+|.+
T Consensus        38 ~v~~G~~v~l~~~N~~~-----~-~h~~~i~~--~~~~~~l~~g~~~~~~f~~~~~G~y~~   90 (104)
T PF13473_consen   38 TVKAGQPVTLTFTNNDS-----R-PHEFVIPD--LGISKVLPPGETATVTFTPLKPGEYEF   90 (104)
T ss_dssp             EEETTCEEEEEEEE-SS-----S--EEEEEGG--GTEEEEE-TT-EEEEEEEE-S-EEEEE
T ss_pred             EEcCCCeEEEEEEECCC-----C-cEEEEECC--CceEEEECCCCEEEEEEcCCCCEEEEE
Confidence            35566666665543321     1 23444443  211111122346788999999999975

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.59  E-value=2  Score=27.44  Aligned_cols=60  Identities=17%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             eEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec-----cceeeEEEEeccCceeEEee
Q 030732           46 CVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN-----VTHGQFAFTTTEAGNYMACF  112 (172)
Q Consensus        46 CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~-----~~~g~f~fta~~~G~y~iCF  112 (172)
                      .|.-+++++..+.+.  +.+.    .. +.++.+.+++|+.+.+...     .......|++..+|.|.+=.
T Consensus         4 ~y~f~v~ag~~l~i~--l~~~----~~-d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    4 YYSFTVPAGGTLTID--LSGG----SG-DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEESTTEEEEEE--ECET----TS-SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEcCCCEEEEE--EcCC----CC-CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            455666776665543  3432    11 6889999999887766322     23456788899999998744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=90.42  E-value=2.5  Score=28.06  Aligned_cols=54  Identities=17%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEec---------cCceeEEeee
Q 030732           55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTT---------EAGNYMACFW  113 (172)
Q Consensus        55 ~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~---------~~G~y~iCF~  113 (172)
                      ....+.|.+....    . .+.+.|+|.+|++|.+..  ..+.|.+.|+-.         .+|.|.+=+.
T Consensus        12 ~~~~~~~~l~~~a----~-~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~   76 (81)
T PF13860_consen   12 TKGSIEYTLPEDA----D-NVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVT   76 (81)
T ss_dssp             CEEEEEEEECSSC----E-EEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEE
T ss_pred             EEEEEEEeCCCcc----c-EEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEE
Confidence            4677777776532    2 799999999999997753  234566666543         2466665444

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=89.44  E-value=4.9  Score=27.18  Aligned_cols=42  Identities=26%  Similarity=0.526  Sum_probs=30.4

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~  115 (172)
                      .+.+.|.+|+|+.+--+ .....|  ..+|+....|.|.+.+.-+
T Consensus        33 ~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~   77 (93)
T smart00557       33 ELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFG   77 (93)
T ss_pred             cEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEEC
Confidence            79999999999653222 222344  5678889999999998864

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=87.62  E-value=6.7  Score=26.51  Aligned_cols=62  Identities=19%  Similarity=0.241  Sum_probs=38.1

Q ss_pred             CCcEEEEEEEEeeCC----CCCCCCeeEEEEECCCCCeEEeeec-c--ceeeEEEEe--cc---CceeEEeeeeC
Q 030732           53 SNVVVLADYYVIDEA----HPEHPPTVSAKVTSPYGNNLHHNEN-V--THGQFAFTT--TE---AGNYMACFWLG  115 (172)
Q Consensus        53 ~~~~v~~~y~v~~~~----~~~~~~~v~v~V~dP~g~~l~~~~~-~--~~g~f~fta--~~---~G~y~iCF~n~  115 (172)
                      .|+.|.+.-.+.+.+    .+.+. .+.+.|.||+|+.+.+... .  ..|.++++.  ..   .|.|++=+...
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~-~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~   86 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANS-PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD   86 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSE-EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred             CCCEEEEEEEEeccccccccccCC-ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence            366666665554432    11122 8999999999999877765 2  345444443  22   48888888863

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=87.28  E-value=3  Score=29.14  Aligned_cols=57  Identities=11%  Similarity=0.096  Sum_probs=36.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc--eeeEEEEe--ccCceeEEeeeeCCC
Q 030732           54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT--HGQFAFTT--TEAGNYMACFWLGSN  117 (172)
Q Consensus        54 ~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~--~g~f~fta--~~~G~y~iCF~n~~~  117 (172)
                      +..+.+.|...      . +.+.++|+|.+|+++|++....  .....+..  ..+|.|.+=+.+.+.
T Consensus        36 ~~~l~I~F~~~------~-~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   36 GNNLSIEFESP------I-GDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             TTEEEEEESS---------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCEEEEEEcCC------C-CCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            45566666311      1 2899999999999999985433  22456655  458999999997543

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PRK05842 flgD flagellar basal body rod modification protein; Reviewed

Probab=84.68  E-value=5.4  Score=33.36  Aligned_cols=58  Identities=9%  Similarity=0.053  Sum_probs=39.4

Q ss_pred             EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc----ceeeEEEEecc---------CceeEEeeee
Q 030732           56 VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV----THGQFAFTTTE---------AGNYMACFWL  114 (172)
Q Consensus        56 ~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~----~~g~f~fta~~---------~G~y~iCF~n  114 (172)
                      .+.+.|.+..+...+.. .+.+.|+|.+|++|++-.-.    ..|.+.|+-..         +|.|+|=...
T Consensus       150 ~~~~~~~l~~~~~~~a~-~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a  220 (295)
T PRK05842        150 KLSFSLFFDEKIDASKG-VPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY  220 (295)
T ss_pred             ceEEEEeccccccccCc-eEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence            55666665432211223 79999999999999876432    35888887433         6999998864

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=84.53  E-value=2.5  Score=26.71  Aligned_cols=41  Identities=15%  Similarity=0.204  Sum_probs=34.3

Q ss_pred             eeEEEEECCCCCeEEe--eeccceeeEEEEeccCceeEEeeee
Q 030732           74 TVSAKVTSPYGNNLHH--NENVTHGQFAFTTTEAGNYMACFWL  114 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~--~~~~~~g~f~fta~~~G~y~iCF~n  114 (172)
                      ++.|.+++.++.....  ..-...|.+.|.--..|.|.+=...
T Consensus         3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~   45 (70)
T PF05738_consen    3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETK   45 (70)
T ss_dssp             TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEE
T ss_pred             CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEE
Confidence            6888999988887765  4445789999999999999999886

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PRK06655 flgD flagellar basal body rod modification protein; Reviewed

Probab=84.36  E-value=5.8  Score=31.79  Aligned_cols=55  Identities=16%  Similarity=0.137  Sum_probs=39.5

Q ss_pred             EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec--cceeeEEEEec---------cCceeEEeeeeC
Q 030732           56 VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN--VTHGQFAFTTT---------EAGNYMACFWLG  115 (172)
Q Consensus        56 ~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~--~~~g~f~fta~---------~~G~y~iCF~n~  115 (172)
                      .+.+.|...+.    .. .+.++|+|.+|++|++..-  ...|.+.|+-.         .+|.|++=+...
T Consensus       114 ~~~~~~~l~~~----a~-~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~  179 (225)
T PRK06655        114 TTPFGVELPSA----AD-NVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS  179 (225)
T ss_pred             ceEEEEEcCCC----Cc-EEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence            45666665542    22 7999999999999976643  46788888543         379999988743

>PRK02710 plastocyanin; Provisional

Probab=84.28  E-value=13  Score=26.54  Aligned_cols=92  Identities=13%  Similarity=0.093  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHHhhhccccCeeEEEEEEEeCCC-cceEe---EEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCe
Q 030732           11 ATVLPLILLLCLACYICVVPVTEAIWLQIPSSG-TKCVS---EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNN   86 (172)
Q Consensus        11 ~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~-~~CF~---e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~   86 (172)
                      +.++..+++++...+......+...++.+.... .--|.   -+++.|+.|.  +...+.   ..+ ++.+  .+..+ .
T Consensus         7 ~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~--~~N~~~---~~H-~v~~--~~~~~-~   77 (119)
T PRK02710          7 SIAAALVAVVSSFGLGVSSASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVK--WVNNKL---APH-NAVF--DGAKE-L   77 (119)
T ss_pred             HHHHHHHHHHHHHHhcccccccceEEEEEccCCCeeEEeCCEEEEcCCCEEE--EEECCC---CCc-eEEe--cCCcc-c
Confidence            444444445555444444455666777776432 23554   2466677543  332221   122 4432  22211 1


Q ss_pred             EEee-eccceeeEEEEeccCceeE-Ee
Q 030732           87 LHHN-ENVTHGQFAFTTTEAGNYM-AC  111 (172)
Q Consensus        87 l~~~-~~~~~g~f~fta~~~G~y~-iC  111 (172)
                      -.+. .......++++...+|.|. +|
T Consensus        78 ~~~~~~~~pg~t~~~tF~~~G~y~y~C  104 (119)
T PRK02710         78 SHKDLAFAPGESWEETFSEAGTYTYYC  104 (119)
T ss_pred             cccccccCCCCEEEEEecCCEEEEEEc
Confidence            0111 1123335666666799995 46

>PRK12812 flgD flagellar basal body rod modification protein; Reviewed

Probab=84.27  E-value=4.8  Score=33.05  Aligned_cols=55  Identities=9%  Similarity=0.202  Sum_probs=40.7

Q ss_pred             cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEecc---------CceeEEeeee
Q 030732           55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWL  114 (172)
Q Consensus        55 ~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~~---------~G~y~iCF~n  114 (172)
                      ..+.+.|.+...    .. .+.+.|+|.+|++|...+  ....|.+.|+-..         +|.|+|=+..
T Consensus       128 ~~~~~~~~l~~~----a~-~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A  193 (259)
T PRK12812        128 ELIALKLYFPED----SD-EGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY  193 (259)
T ss_pred             ceeEEEEecCCc----Cc-eEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence            356667766542    22 799999999999997764  3457888887755         6999999874

>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional

Probab=83.82  E-value=8.9  Score=33.19  Aligned_cols=94  Identities=10%  Similarity=0.259  Sum_probs=46.5

Q ss_pred             ehhhhhHHHHHHHHHHhhhccccCeeEEEEEEEeCCCcceEeEE--cCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCC
Q 030732            7 SLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEE--INSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYG   84 (172)
Q Consensus         7 ~~~~~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~e~--v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g   84 (172)
                      .|||..+.+.++++...|..........+.+.+..+  .|--..  ++.|.   ..|.|.+.+   .. ...|.+.+. +
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~---~~-~~Efe~~~~-~   73 (375)
T PRK10378          4 NFRRNALQLALAALFSSAFMANAADIPQVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS---QK-ALEWEILKG-V   73 (375)
T ss_pred             hhhhhHHHHHHHHhccCCcccccccCCceEEEEECC--ccccCceeeCCCC---EEEEEEeCC---CC-cceEEeecc-c
Confidence            467755555444444433211112223456666654  565444  45564   455655432   12 456666642 2


Q ss_pred             CeEEeeeccc---eeeEEEEeccCceeEE-e
Q 030732           85 NNLHHNENVT---HGQFAFTTTEAGNYMA-C  111 (172)
Q Consensus        85 ~~l~~~~~~~---~g~f~fta~~~G~y~i-C  111 (172)
                      .++-++++..   .+.+.++. .+|.|.+ |
T Consensus        74 ~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C  103 (375)
T PRK10378         74 MVVEERENIAPGFSQKMTANL-QPGEYDMTC  103 (375)
T ss_pred             cccccccccCCCCceEEEEec-CCceEEeec
Confidence            3333344432   34555444 7999998 9

>PRK12813 flgD flagellar basal body rod modification protein; Reviewed

Probab=83.71  E-value=5.7  Score=31.85  Aligned_cols=56  Identities=13%  Similarity=0.003  Sum_probs=39.2

Q ss_pred             CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEec---------cCceeEEeeeeC
Q 030732           54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTT---------EAGNYMACFWLG  115 (172)
Q Consensus        54 ~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~---------~~G~y~iCF~n~  115 (172)
                      +..+.+.|...+..    . .+.+.|+|.+|++|+..+- ..|.+.|+-.         .+|.|+|=....
T Consensus       110 g~~~~~~~~l~~~a----~-~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~  174 (223)
T PRK12813        110 GTPVTISPNPAADA----D-KAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESY  174 (223)
T ss_pred             CceeEEEEeccCCC----c-eEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEE
Confidence            44667777766432    2 7999999999999977653 4455555543         269999998754

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=82.67  E-value=1.8  Score=28.06  Aligned_cols=42  Identities=17%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             eeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~  115 (172)
                      +..+.+.+.++.....-.-..+|+|.|..-.+|.|.+=+...
T Consensus        16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~   57 (82)
T PF13620_consen   16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAP   57 (82)
T ss_dssp             T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBT
T ss_pred             CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEEC
Confidence            788999988777766655557999999977779999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	95.91
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	91.31
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.1
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.06
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	90.15
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.79
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	89.55
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	88.9
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.5
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	87.3
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	86.59
3osv_A	138	Flagellar basal-BODY ROD modification protein FLG;	86.49
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	84.46
3sd2_A	101	Putative member of DUF3244 protein family; immunog	83.76
3d33_A	108	Domain of unknown function with AN immunoglobulin	83.49
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	83.28
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	83.1
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.99
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	82.77
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	81.94
2k7p_A	188	Filamin-A; IG-like, ABP-280, actin binding protein	81.81
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	81.55
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	80.22

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=95.91  E-value=0.12  Score=43.22  Aligned_cols=89  Identities=15%  Similarity=0.093  Sum_probs=60.3

Q ss_pred             EEEEeCCCcceEeEEcC-CCcEEEEEEEEeeCCCCCCCCeeEEEEEC-----CC---C--CeEEeeecc----ceeeEEE
Q 030732           36 WLQIPSSGTKCVSEEIN-SNVVVLADYYVIDEAHPEHPPTVSAKVTS-----PY---G--NNLHHNENV----THGQFAF  100 (172)
Q Consensus        36 ~f~l~~~~~~CF~e~v~-~~~~v~~~y~v~~~~~~~~~~~v~v~V~d-----P~---g--~~l~~~~~~----~~g~f~f  100 (172)
                      ++.|++|++..+--.+. .|..+...|.+.+.       +|.|.|.-     ++   |  ..++...+.    .--.-+|
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~-------DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~~  353 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSDGA-------DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTL  353 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESSS-------CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEE
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEecCC-------cEEEEEEEecccccccCCCcceEEeeeeeecCccccccCEE
Confidence            48899999999888887 58899999988531       67777761     11   2  123332221    1124457


Q ss_pred             EeccCceeEEeeeeCCCCCCcccEEEEEEEEec
Q 030732          101 TTTEAGNYMACFWLGSNPQKVADATLGLDWRIG  133 (172)
Q Consensus       101 ta~~~G~y~iCF~n~~~~~~~~~~~V~fdi~~G  133 (172)
                      +..++|.|.++|.|+.+++  ..++|.+.+++-
T Consensus       354 ~~~~~G~y~l~fdNs~S~~--~~k~l~y~v~v~  384 (403)
T 1olm_A          354 TCSDPGIYVLRFDNTYSFI--HAKKVNFTVEVL  384 (403)
T ss_dssp             ECCSCEEEEEEEECTTCCC--CSEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEeccccce--eceEEEEEEEEe
Confidence            7999999999999866544  456777777653

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.31  E-value=2.2  Score=28.34  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=35.1

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCCCCCcccEEEE
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~~~~~~~~~V~  127 (172)
                      .+.+.|.+|+|+.+--+ .+...|  ...|++.+.|.|.++..-....-......|.
T Consensus        23 ~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~   79 (93)
T 2d7n_A           23 ELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   79 (93)
T ss_dssp             CEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEEE
Confidence            79999999999753211 111234  6678899999999999865443222443333

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.10  E-value=1.3  Score=30.04  Aligned_cols=57  Identities=18%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             EEEEEeeCCCCCCCCeeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCC
Q 030732           59 ADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        59 ~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~  117 (172)
                      ..|.+.-.+.++ . .+.+.|.+|+|..+.-+ .+...|  ..+|+..+.|.|.+.+.-...
T Consensus        31 ~~F~V~~~~aG~-~-~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   90 (108)
T 2dj4_A           31 QSFTVDSSKAGL-A-PLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADE   90 (108)
T ss_dssp             EEEEEECTTTCS-C-CEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSS
T ss_pred             EEEEEEECCCCC-c-eEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            345554333222 3 79999999999543222 122344  455788889999999886443

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.06  E-value=1.3  Score=29.75  Aligned_cols=44  Identities=16%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~  117 (172)
                      .+.+.|.+|+|+.+--+ .....|  ...|+..+.|.|+++..-...
T Consensus        31 ~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~   77 (95)
T 2ee9_A           31 EITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGS   77 (95)
T ss_dssp             SEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred             CEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence            89999999999753221 111234  567788999999999986543

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.15  E-value=2.7  Score=28.59  Aligned_cols=56  Identities=14%  Similarity=0.319  Sum_probs=35.6

Q ss_pred             EEEEeeCCCCCCCCeeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCC
Q 030732           60 DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        60 ~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~  117 (172)
                      +|.+.-.+.+. . .+.+.|.+|+|+.+.-+ .+...|  ..+|+..+.|.|.+.+.-...
T Consensus        33 ~F~V~~~daG~-~-~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   91 (115)
T 2d7m_A           33 EFTIDARDAGE-G-LLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD   91 (115)
T ss_dssp             EEEEEESSSCS-S-CEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             EEEEEECCCCC-C-EEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCE
Confidence            45555433222 2 79999999998643221 122345  556788999999999886443

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.79  E-value=3.4  Score=28.74  Aligned_cols=44  Identities=20%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~  117 (172)
                      .+.+.|.+|+|..+.-+ .+...|  ...|+..+.|.|++.+.-...
T Consensus        44 ~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~   90 (124)
T 2dmb_A           44 KVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   90 (124)
T ss_dssp             CEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             cEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence            79999999998643211 111334  566889999999999986443

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=89.55  E-value=3.2  Score=27.41  Aligned_cols=62  Identities=19%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             CCcEEEEEEEEeeCC-CCCCCCeeEEEEECCCCCeEEeeecc--ceeeE--EEEec---cCceeEEeeee
Q 030732           53 SNVVVLADYYVIDEA-HPEHPPTVSAKVTSPYGNNLHHNENV--THGQF--AFTTT---EAGNYMACFWL  114 (172)
Q Consensus        53 ~~~~v~~~y~v~~~~-~~~~~~~v~v~V~dP~g~~l~~~~~~--~~g~f--~fta~---~~G~y~iCF~n  114 (172)
                      .|+.|....-+.+.. .+.+.+.+.+.|.||+|+.+.+....  ..|.+  .|...   ..|.|++-...
T Consensus        15 PGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~   84 (102)
T 2p9r_A           15 PGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQK   84 (102)
T ss_dssp             TTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEEC
T ss_pred             CCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEE
Confidence            466666666555432 12222147899999999998775322  23433  44442   35999999985

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=88.90  E-value=0.42  Score=33.19  Aligned_cols=70  Identities=11%  Similarity=0.056  Sum_probs=49.0

Q ss_pred             EEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCe---EEeeeccceeeEEEEeccCceeEEeee
Q 030732           37 LQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNN---LHHNENVTHGQFAFTTTEAGNYMACFW  113 (172)
Q Consensus        37 f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~---l~~~~~~~~g~f~fta~~~G~y~iCF~  113 (172)
                      =.|.+++...+.-.+.+|..+.+..  ...     . .+-|.|.+|+++.   ++..+....+.++-+...+|.|++=..
T Consensus        22 G~I~g~~~~~Y~~~a~aGQ~l~V~l--s~~-----~-~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~   93 (114)
T 4dzg_A           22 GSFTGYDTIHYTLVAXAGQTMTVXI--GGS-----S-NANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVY   93 (114)
T ss_dssp             CCCBTTCCEEEECCC-CCCEEEC-C--EES-----T-TCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEE
T ss_pred             EEecCCCceEEEEEecCCCEEEEEe--CCC-----C-cEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEE
Confidence            3466777788888888888887766  321     1 5788899999873   343333345689999999999999988


Q ss_pred             e
Q 030732          114 L  114 (172)
Q Consensus       114 n  114 (172)
                      .
T Consensus        94 ~   94 (114)
T 4dzg_A           94 Q   94 (114)
T ss_dssp             C
T ss_pred             e
Confidence            5

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.50  E-value=4.1  Score=27.26  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeccCceeEEeeeeCC
Q 030732           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGS  116 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~~~~~~g--~f~fta~~~G~y~iCF~n~~  116 (172)
                      .+.+.|.+|.+..+ +-.+...|  ..+|+...+|.|.+.+.-+.
T Consensus        43 ~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2ee6_A           43 GLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFND   86 (105)
T ss_dssp             CEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETT
T ss_pred             cEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECC
Confidence            78999999998554 22223345  67899999999999998643

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=87.30  E-value=5.3  Score=27.23  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=31.4

Q ss_pred             eeEEEEECCCCCeEEee---eccceeeEEEEeccCceeEEeeeeCCCC
Q 030732           74 TVSAKVTSPYGNNLHHN---ENVTHGQFAFTTTEAGNYMACFWLGSNP  118 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~---~~~~~g~f~fta~~~G~y~iCF~n~~~~  118 (172)
                      .+.+.|.+|+|+.+--.   .+...=..+|+..+.|.|.+...-+...
T Consensus        42 ~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~~   89 (112)
T 2d7p_A           42 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAH   89 (112)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCB
T ss_pred             CEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCeE
Confidence            79999999999753221   1112336678899999999998865443

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=86.59  E-value=5.3  Score=26.49  Aligned_cols=42  Identities=14%  Similarity=0.251  Sum_probs=28.7

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~  115 (172)
                      .+.+.|.+|+|..+.-+ .+...|  ..+|+....|.|.+...-.
T Consensus        40 ~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~   84 (100)
T 3rgh_A           40 ELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYG   84 (100)
T ss_dssp             CEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEET
T ss_pred             eEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEEC
Confidence            79999999998643221 222344  4577888889999887753

>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}

Probab=86.49  E-value=3.8  Score=28.98  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=39.6

Q ss_pred             EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEecc---------CceeEEeeeeC
Q 030732           56 VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWLG  115 (172)
Q Consensus        56 ~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~~---------~G~y~iCF~n~  115 (172)
                      .+.+.|.+....    . .+.++|+|.+|+++.+..  ..+.|.+.|+-..         +|.|++-+...
T Consensus        25 ~~~~~~~l~~~a----~-~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a~   90 (138)
T 3osv_A           25 TFKASLNLPVSS----S-NVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTS   90 (138)
T ss_dssp             CEEEEEEESBCE----E-EEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             eEEEEEECCCCC----c-EEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEEE
Confidence            467777776431    2 799999999999988764  3466777776542         68999988754

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=84.46  E-value=6.1  Score=25.37  Aligned_cols=43  Identities=12%  Similarity=0.130  Sum_probs=28.5

Q ss_pred             eeEEEEECCCCCeEE---eeeccceeeEEEEeccCceeEEeeeeCC
Q 030732           74 TVSAKVTSPYGNNLH---HNENVTHGQFAFTTTEAGNYMACFWLGS  116 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~---~~~~~~~g~f~fta~~~G~y~iCF~n~~  116 (172)
                      .+.+.|.+|+|..+.   ...+...=..+|+..++|.|.+...-..
T Consensus        31 ~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           31 MLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             CEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             cEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            688899999985321   1111123355678899999999988543

>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}

Probab=83.76  E-value=7.9  Score=26.24  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             EEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECC-CCCeEEeeeccceeeEEEEe--ccCceeEEeee
Q 030732           37 LQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSP-YGNNLHHNENVTHGQFAFTT--TEAGNYMACFW  113 (172)
Q Consensus        37 f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP-~g~~l~~~~~~~~g~f~fta--~~~G~y~iCF~  113 (172)
                      +.+.|-.++|-+-+   | .+.+.|.  +     ..+.+.++|+|. .|+++|++....-....+..  ..+|+|.+=+.
T Consensus        20 I~i~P~~~~~A~I~---n-vlsV~F~--~-----~~~~vTItItNe~TG~~VYs~~~s~p~~i~IdLnge~sG~Y~IeI~   88 (101)
T 3sd2_A           20 IPIQPTYEKCAILS---N-ILNVSFG--R-----AKDYAIITVTNKATGEIVHSKTYHNTSIVMIDMSSCEKGEYTIHII   88 (101)
T ss_dssp             CCCCCSSEEEEEET---T-EEEEEES--S-----CCSCEEEEEEETTTCCEEEEEEESSCSEEEEECTTSCSEEEEEEEE
T ss_pred             eeecccccccEEEe---C-EEEEEec--c-----CCCcEEEEEEECCCCcEEEEEeccCCcEEEEEcCCCcCceEEEEEE
Confidence            33445555776533   3 7777772  2     123899999986 79999999655444556655  44899999888


Q ss_pred             eCC
Q 030732          114 LGS  116 (172)
Q Consensus       114 n~~  116 (172)
                      ...
T Consensus        89 ~~~   91 (101)
T 3sd2_A           89 LND   91 (101)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            643

>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}

Probab=83.49  E-value=5  Score=27.51  Aligned_cols=55  Identities=9%  Similarity=0.052  Sum_probs=39.5

Q ss_pred             CcEEEEEEEEeeCCCCCCCCeeEEEEE-CCCCCeEEeeeccce--eeEEEEec--cCceeEEeeeeC
Q 030732           54 NVVVLADYYVIDEAHPEHPPTVSAKVT-SPYGNNLHHNENVTH--GQFAFTTT--EAGNYMACFWLG  115 (172)
Q Consensus        54 ~~~v~~~y~v~~~~~~~~~~~v~v~V~-dP~g~~l~~~~~~~~--g~f~fta~--~~G~y~iCF~n~  115 (172)
                      +..+.+.|  ..+     .+.+.++|+ |.+|+++|++.-...  ..+.+...  .+|+|.+=+.+.
T Consensus        37 ~~~L~I~F--~~~-----~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~   96 (108)
T 3d33_A           37 GYLLTLKN--ASP-----DRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGT   96 (108)
T ss_dssp             TTEEEEEE--SSC-----CSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEE
T ss_pred             CCEEEEEE--CCc-----CCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeC
Confidence            55677777  221     128999999 889999999864332  45666665  689999999975

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=83.28  E-value=5.4  Score=32.73  Aligned_cols=80  Identities=11%  Similarity=0.110  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCcceEeEEcCC-CcE--EEEEEEEeeCCCCCCCCeeEEEEECCCCCeEE---eeecccee--eEEEEeccC
Q 030732           34 AIWLQIPSSGTKCVSEEINS-NVV--VLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH---HNENVTHG--QFAFTTTEA  105 (172)
Q Consensus        34 al~f~l~~~~~~CF~e~v~~-~~~--v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~---~~~~~~~g--~f~fta~~~  105 (172)
                      .+.-...|.+.+|+.--+.. +..  -..+|.|...+.| .. .+.+.|.+|+|..+-   ...+...|  ..+|++.++
T Consensus       247 ~l~~k~~pskv~a~GpGle~~g~~vg~p~~F~Vdt~~AG-~g-~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y~P~~~  324 (347)
T 4b7l_A          247 PLKPKLNPKKARAYGRGIEPTGNMVKQPAKFTVDTISAG-QG-DVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYLPKVT  324 (347)
T ss_dssp             CCCCSCCGGGCEEESGGGSSSCCCTTSCEEEEEECTTTC-SC-CEEEEEECTTSCEEECEEEESSTTCSEEEEEECCCSS
T ss_pred             cccccccccceeEEeccccccCceeCCEEEEEEEeCCCC-CC-ceEEEEECCCCCeecCEEEEEcCCCCEEEEEEEECCC
Confidence            34444556666777766653 111  1345665533322 22 799999999997532   22222345  456889999


Q ss_pred             ceeEEeeeeC
Q 030732          106 GNYMACFWLG  115 (172)
Q Consensus       106 G~y~iCF~n~  115 (172)
                      |.|.+-+.-.
T Consensus       325 G~~~I~V~~~  334 (347)
T 4b7l_A          325 GLHKVTVLFA  334 (347)
T ss_dssp             SEEEEEEEET
T ss_pred             EeEEEEEEEC
Confidence            9999998753

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=83.10  E-value=7.5  Score=25.32  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=27.7

Q ss_pred             eeEEEEECCCCCeEE-eeecccee--eEEEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLH-HNENVTHG--QFAFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~-~~~~~~~g--~f~fta~~~G~y~iCF~n~  115 (172)
                      .+.+.|.+|+|..+. +-.+...|  ..+|+..++|.|.+...-.
T Consensus        38 ~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~   82 (96)
T 1v05_A           38 MMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWG   82 (96)
T ss_dssp             CEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEET
T ss_pred             cEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEEC
Confidence            688999999985321 11112234  5567888889999888853

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=82.99  E-value=7.2  Score=26.31  Aligned_cols=43  Identities=19%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGS  116 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~  116 (172)
                      .+.+.|.+|+|..+.-+ .+...|  ..+|+..+.|.|++.+.-..
T Consensus        43 ~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   88 (113)
T 2dia_A           43 ALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   88 (113)
T ss_dssp             CEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             cEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            78999999987543222 222345  56688899999999988643

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=82.77  E-value=8  Score=27.21  Aligned_cols=53  Identities=15%  Similarity=0.101  Sum_probs=37.9

Q ss_pred             EEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEecc---------CceeEEeeeeC
Q 030732           57 VLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWLG  115 (172)
Q Consensus        57 v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~~---------~G~y~iCF~n~  115 (172)
                      ..+.|. ...    .. .+.+.|+|.+|+++.+.+  ..+.|.+.|+-..         +|.|++-+...
T Consensus        29 ~~~~~~-~~~----a~-~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~   92 (138)
T 3c12_A           29 AKGVVA-ATS----AG-FVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT   92 (138)
T ss_dssp             EEEEEE-ESS----SE-EEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             EEEEEe-cCC----CC-EEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence            456666 431    22 799999999999987754  3467777777542         69999999854

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=81.94  E-value=11  Score=26.62  Aligned_cols=57  Identities=18%  Similarity=0.254  Sum_probs=36.3

Q ss_pred             EEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeCC
Q 030732           58 LADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS  116 (172)
Q Consensus        58 ~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~~  116 (172)
                      ..+|.+...+.+ .. .+.+.|.+|++..+--+++..-=..+|+..++|.|.+-..-.+
T Consensus        63 ~~~F~V~t~daG-~g-~l~v~I~gPs~~~~~~~d~~dGy~V~YtP~~~G~y~I~Vk~~g  119 (138)
T 2nqc_A           63 SSEFIVNTLNAG-SG-ALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGG  119 (138)
T ss_dssp             CEEEEEECTTSC-SC-CEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESS
T ss_pred             CeEEEEEEcCCC-CC-cEEEEEECCCCCeeeEEECCCcEEEEEEcCCCEEEEEEEEECC
Confidence            344555543322 22 7999999999865433332211466788899999999988654

>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}

Probab=81.81  E-value=13  Score=27.43  Aligned_cols=55  Identities=13%  Similarity=0.218  Sum_probs=36.6

Q ss_pred             EEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecccee--eEEEEeccCceeEEeeeeCC
Q 030732           59 ADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGS  116 (172)
Q Consensus        59 ~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g--~f~fta~~~G~y~iCF~n~~  116 (172)
                      ..|.+...+.+ .. .+.+.|.+|.+..+.-.+ ...|  ..+|+...+|.|.++..-..
T Consensus       116 ~~F~V~t~dag-~g-~l~v~I~gp~~~~~~~~d-~~dGty~v~Y~p~~~G~y~i~V~~~g  172 (188)
T 2k7p_A          116 ATFTVNTKDAG-EG-GLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYNE  172 (188)
T ss_dssp             EEEEEECTTCC-SS-CEEEEEECSSCCEEEEEE-CTTSEEEEEEECCSSEEEEEEEEETT
T ss_pred             EEEEEEeCCCC-CC-CeEEEEeCCCCCeEEEEE-CCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            44555543322 22 788999999885543333 2345  77889999999999998643

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=81.55  E-value=4.8  Score=27.05  Aligned_cols=44  Identities=23%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~  117 (172)
                      .+.+.|.+|+|+.+--+ .....|  ..+|+..+.|.|.+...-...
T Consensus        32 ~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~   78 (102)
T 2dlg_A           32 DMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQ   78 (102)
T ss_dssp             GCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred             CEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence            79999999999754322 112334  556888999999999885443

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=80.22  E-value=4.9  Score=27.61  Aligned_cols=44  Identities=18%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             eeEEEEECCCCCeEE---eeeccceeeEEEEeccCceeEEeeeeCCC
Q 030732           74 TVSAKVTSPYGNNLH---HNENVTHGQFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~---~~~~~~~g~f~fta~~~G~y~iCF~n~~~  117 (172)
                      .+.+.|.+|+|+.+-   .......=..+|+..+.|+|.+...-...
T Consensus        46 ~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~   92 (116)
T 2dmc_A           46 SLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGN   92 (116)
T ss_dssp             TBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSS
T ss_pred             CEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCE
Confidence            789999999996422   22212234668999999999999886443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.54
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	94.81
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	92.49
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.01
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	91.91
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.13
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.8
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	90.49
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.63
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.38
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	86.36
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	85.5
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	85.46
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	84.99
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	84.65
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.08

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00096  Score=45.49  Aligned_cols=88  Identities=15%  Similarity=0.113  Sum_probs=56.0

Q ss_pred             EEEEeCCCcceEeEEcC-CCcEEEEEEEEeeCCCCCCCCeeEEEEEC--CC------C--CeEEeeecc--ce--eeEEE
Q 030732           36 WLQIPSSGTKCVSEEIN-SNVVVLADYYVIDEAHPEHPPTVSAKVTS--PY------G--NNLHHNENV--TH--GQFAF  100 (172)
Q Consensus        36 ~f~l~~~~~~CF~e~v~-~~~~v~~~y~v~~~~~~~~~~~v~v~V~d--P~------g--~~l~~~~~~--~~--g~f~f  100 (172)
                      ++.|++|+..-.--++. .|+.+...|++.+      . +|.|.|.=  ..      +  ..+....+.  ..  -.=+|
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~~------~-DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g~~   79 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG------A-DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTL   79 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS------S-CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEE
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeCC------c-cEEEEEEEecccCCccccCceEEEeeeEEecCCceeEccEE
Confidence            45788888866666665 4888888887653      1 67777651  11      1  123332211  11  13357


Q ss_pred             EeccCceeEEeeeeCCCCCCcccEEEEEEEEe
Q 030732          101 TTTEAGNYMACFWLGSNPQKVADATLGLDWRI  132 (172)
Q Consensus       101 ta~~~G~y~iCF~n~~~~~~~~~~~V~fdi~~  132 (172)
                      .+.++|.|.+||+|+.+++  ..+.|.+.+++
T Consensus        80 ~~~~~G~Y~l~FDNs~S~~--~sK~l~Y~i~v  109 (119)
T d1olma2          80 TCSDPGIYVLRFDNTYSFI--HAKKVNFTVEV  109 (119)
T ss_dssp             ECCSCEEEEEEEECTTCCC--CSEEEEEEEEE
T ss_pred             EcCCCEEEEEEEeCCcceE--EeeEEEEEEEE
Confidence            7789999999999876654  56788887765

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.13  Score=33.24  Aligned_cols=44  Identities=16%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~  117 (172)
                      .+.+.|.+|+|+.+--+ .....|  ..+|+..+.|.|++.+.-.+.
T Consensus        38 ~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~   84 (102)
T d2d7ma1          38 LLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD   84 (102)
T ss_dssp             CEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             cEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCE
Confidence            79999999999753222 222345  458999999999999886443

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.62  Score=30.15  Aligned_cols=44  Identities=20%  Similarity=0.425  Sum_probs=32.4

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~  117 (172)
                      .+.+.|.+|+|+.+--. .+...|  ..+|+..+.|.|++.+.-.+.
T Consensus        37 ~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~   83 (111)
T d2dmba1          37 KVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   83 (111)
T ss_dssp             CEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             cEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCE
Confidence            79999999998764322 222345  568899999999999986544

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.54  Score=29.50  Aligned_cols=41  Identities=17%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~~~~~~g~--f~fta~~~G~y~iCF~n~  115 (172)
                      .+.+.|.+|++..+--.++ ..|.  .+|++.+.|.|++.+.-.
T Consensus        34 ~l~v~v~gp~~~~v~v~d~-~dg~y~v~ytP~~~G~y~i~V~~~   76 (92)
T d2w0pa1          34 GLAIAVEGPSKAEISFEDR-KDGSCGVAYVVQEPGDYEVSVKFN   76 (92)
T ss_dssp             CEEEEEEESSCCEEEEEEC-TTSCEEEEEECSSCEEEEEEEEET
T ss_pred             ceEEEEEeCCceEEEEEEC-CCCEEEEEEEECCCceEEEEEEEC
Confidence            7899999999866533333 4564  589999999999998754

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.83  Score=28.45  Aligned_cols=40  Identities=15%  Similarity=0.305  Sum_probs=30.7

Q ss_pred             eeEEEEECCCCCeEEeeeccceeeE--EEEeccCceeEEeeee
Q 030732           74 TVSAKVTSPYGNNLHHNENVTHGQF--AFTTTEAGNYMACFWL  114 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~~~~~~g~f--~fta~~~G~y~iCF~n  114 (172)
                      .+.+.|.+|++..+.-.++ ..|.|  +|++.+.|.|++-+.-
T Consensus        35 ~l~v~v~~p~~~~~~v~~~-~dg~y~v~ytP~~~G~h~i~V~~   76 (92)
T d2bp3a1          35 GLSLAIEGPSKAEISCTDN-QDGTCSVSYLPVLPGDYSILVKY   76 (92)
T ss_dssp             EEEEEEEESSCCEEEEEEC-SSSEEEEEEECSSCEEEEEEEEE
T ss_pred             ceEEEEEeCCCceEEEEEC-CCCEEEEEEEECCCccEEEEEEE
Confidence            7899999999876544443 45655  5999999999998764

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.96  Score=28.58  Aligned_cols=43  Identities=21%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGS  116 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~  116 (172)
                      .+++.|.+|+|+.+--+ .....|  ...|++.+.|.|++-..-..
T Consensus        37 ~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g   82 (101)
T d2dj4a1          37 PLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD   82 (101)
T ss_dssp             CEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred             CEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            79999999999764322 222345  56788899999999987543

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.87  Score=28.62  Aligned_cols=42  Identities=17%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeccCceeEEeeeeCC
Q 030732           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLGS  116 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~~~~~~g~--f~fta~~~G~y~iCF~n~~  116 (172)
                      .+.+.|.+|++..+--.++ ..|.  .+|++.+.|.|++...-..
T Consensus        36 ~l~v~v~~p~~~~~~v~~~-~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2dica1          36 GLGITVEGPSESKINCRDN-KDGSCSAEYIPFAPGDYDVNITYGG   79 (98)
T ss_dssp             CEEEEEESSSCCCCEEEEC-SSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CcEEEEEeCCCcEEEEEEC-CCCEEEEEEEECCCceEEEEEEECC
Confidence            7899999998865432222 3454  5689999999999988543

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=1.3  Score=27.96  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~  117 (172)
                      .+++.|.+|+|+.+--. .....|  ..+|++.+.|.|.+.+.-...
T Consensus        35 ~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~   81 (99)
T d2d7pa1          35 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA   81 (99)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             eEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCE
Confidence            79999999999764222 112345  456899999999999886443

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=2.1  Score=26.77  Aligned_cols=43  Identities=16%  Similarity=0.351  Sum_probs=31.3

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeccCceeEEeeeeCCC
Q 030732           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLGSN  117 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~~~~~~g~--f~fta~~~G~y~iCF~n~~~  117 (172)
                      .+.+.|.+|++..+--.+ ...|.  .+|++.+.|.|.+...-...
T Consensus        36 ~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~   80 (98)
T d2di8a1          36 GISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKFADE   80 (98)
T ss_dssp             CEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEESSC
T ss_pred             ceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEECCE
Confidence            799999999886553333 23454  56899999999999875433

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=0.43  Score=29.72  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             eeEEEEECCCCCeEEee-eccceeeE--EEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHGQF--AFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g~f--~fta~~~G~y~iCF~n~  115 (172)
                      ++.+.|++|+|+.+-.+ .....|.|  .|+..+.|.|.+-+.-.
T Consensus        25 ~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~   69 (88)
T d2j3sa2          25 DMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYK   69 (88)
T ss_dssp             CEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEET
T ss_pred             cEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEEC
Confidence            79999999999876433 22245654  58999999999998854

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.36  E-value=2.4  Score=26.20  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             eeEEEEECCCCCeEE-eeecccee--eEEEEeccCceeEEeeeeCC
Q 030732           74 TVSAKVTSPYGNNLH-HNENVTHG--QFAFTTTEAGNYMACFWLGS  116 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~-~~~~~~~g--~f~fta~~~G~y~iCF~n~~  116 (172)
                      .+++.|.+|+|..+- +-.....|  ..+|+.++.|.|++.+.-.+
T Consensus        38 ~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          38 MMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             CEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             ceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            799999999986532 21222344  56899999999999988643

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.50  E-value=0.9  Score=28.74  Aligned_cols=42  Identities=17%  Similarity=0.342  Sum_probs=30.2

Q ss_pred             eeEEEEECCCCCeEEee-eccceeeE--EEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHGQF--AFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g~f--~fta~~~G~y~iCF~n~  115 (172)
                      .+.+.|.+|+|..+--+ .+...|.|  +|++...|.|++-+.-.
T Consensus        45 ~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~   89 (104)
T d1qfha1          45 PFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLR   89 (104)
T ss_dssp             CEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEET
T ss_pred             eeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEEC
Confidence            69999999998764322 22235554  78889999999988754

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.46  E-value=2.5  Score=25.52  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=35.2

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeCCCCCCcccEEEE
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~~~~~~~~~~~V~  127 (172)
                      ++.+.|++|+|+.+-.+ .....|  ...|+..+.|.|++=.......-..+...|.
T Consensus        16 ~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~~I~gSPf~v~   72 (80)
T d2d7na1          16 ELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   72 (80)
T ss_dssp             CEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             cEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCEECCCCCEEEE
Confidence            79999999999764222 112344  6778899999999987764433223444444

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.99  E-value=2.9  Score=25.92  Aligned_cols=42  Identities=19%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~  115 (172)
                      .+.+.|.+|+|+.+--+ .....|  ..+|+..+.|.|++.+.-.
T Consensus        36 ~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~   80 (100)
T d2diaa1          36 ALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYG   80 (100)
T ss_dssp             CEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEET
T ss_pred             cEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEEC
Confidence            79999999998753222 222334  6789999999999998853

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.65  E-value=3.1  Score=25.83  Aligned_cols=42  Identities=21%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             eeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeC
Q 030732           74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLG  115 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~  115 (172)
                      .+.+.|.+|++..+--+.+...=..+|++.+.|.|++...-.
T Consensus        36 ~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~~   77 (97)
T d2nqca1          36 ALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYG   77 (97)
T ss_dssp             CEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEES
T ss_pred             ceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEEC
Confidence            789999999987654444333346789999999999998643

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.08  E-value=1.7  Score=27.34  Aligned_cols=41  Identities=15%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             eeEEEEECCCCCeEEe-eeccceee--EEEEeccCceeEEeeee
Q 030732           74 TVSAKVTSPYGNNLHH-NENVTHGQ--FAFTTTEAGNYMACFWL  114 (172)
Q Consensus        74 ~v~v~V~dP~g~~l~~-~~~~~~g~--f~fta~~~G~y~iCF~n  114 (172)
                      ++++.|++|+|+.+-- -.....|.  .+|+..+.|.|++=+.-
T Consensus        39 ~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~~   82 (103)
T d2dmca1          39 SLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKK   82 (103)
T ss_dssp             TBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBB
T ss_pred             cEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEEE
Confidence            7899999999976422 12223454  46999999999986654